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Walrant A, Sachon E. Photolabeling Strategies to Study Membranotropic Peptides Interacting with Lipids and Proteins in Membranes. Bioconjug Chem 2021; 32:1503-1514. [PMID: 34160213 DOI: 10.1021/acs.bioconjchem.1c00291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Membranotropic peptides is a class of peptides that exert their biological action at the level of cell membranes. Understanding how they interact with their different membrane binding partners (lipids, proteins, and/or glycoconjugates) is important to decipher their mechanism of action. Affinity photolabeling is a powerful method to study noncovalent interactions and provide a submolecular picture of the contacts between two interacting partners. In this review, we give a panorama of photolabeling-based studies of the interactions between membranotropic peptides and membranes using either photoreactive lipids or peptides.
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Affiliation(s)
- Astrid Walrant
- Sorbonne Université, École Normale Supérieure, PSL University, CNRS, Laboratoire des Biomolécules, LBM, 75005, Paris, France
| | - Emmanuelle Sachon
- Sorbonne Université, École Normale Supérieure, PSL University, CNRS, Laboratoire des Biomolécules, LBM, 75005, Paris, France.,Sorbonne Université, Mass Spectrometry Sciences Sorbonne University, MS3U platform, UFR 926, UFR 927, 75005, Paris, France
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2
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Dormán G, Nakamura H, Pulsipher A, Prestwich GD. The Life of Pi Star: Exploring the Exciting and Forbidden Worlds of the Benzophenone Photophore. Chem Rev 2016; 116:15284-15398. [PMID: 27983805 DOI: 10.1021/acs.chemrev.6b00342] [Citation(s) in RCA: 133] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The widespread applications of benzophenone (BP) photochemistry in biological chemistry, bioorganic chemistry, and material science have been prominent in both academic and industrial research. BP photophores have unique photochemical properties: upon n-π* excitation at 365 nm, a biradicaloid triplet state is formed reversibly, which can abstract a hydrogen atom from accessible C-H bonds; the radicals subsequently recombine, creating a stable covalent C-C bond. This light-directed covalent attachment process is exploited in many different ways: (i) binding/contact site mapping of ligand (or protein)-protein interactions; (ii) identification of molecular targets and interactome mapping; (iii) proteome profiling; (iv) bioconjugation and site-directed modification of biopolymers; (v) surface grafting and immobilization. BP photochemistry also has many practical advantages, including low reactivity toward water, stability in ambient light, and the convenient excitation at 365 nm. In addition, several BP-containing building blocks and reagents are commercially available. In this review, we explore the "forbidden" (transitions) and excitation-activated world of photoinduced covalent attachment of BP photophores by touring a colorful palette of recent examples. In this exploration, we will see the pros and cons of using BP photophores, and we hope that both novice and expert photolabelers will enjoy and be inspired by the breadth and depth of possibilities.
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Affiliation(s)
- György Dormán
- Targetex llc , Dunakeszi H-2120, Hungary.,Faculty of Pharmacy, University of Szeged , Szeged H-6720, Hungary
| | - Hiroyuki Nakamura
- Laboratory for Chemistry and Life Science, Institute of Innovative Research, Tokyo Institute of Technology , Yokohama 226-8503, Japan
| | - Abigail Pulsipher
- GlycoMira Therapeutics, Inc. , Salt Lake City, Utah 84108, United States.,Division of Head and Neck Surgery, Rhinology - Sinus and Skull Base Surgery, Department of Surgery, University of Utah School of Medicine , Salt Lake City, Utah 84108, United States
| | - Glenn D Prestwich
- Division of Head and Neck Surgery, Rhinology - Sinus and Skull Base Surgery, Department of Surgery, University of Utah School of Medicine , Salt Lake City, Utah 84108, United States
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Xia Y, Peng L. Photoactivatable Lipid Probes for Studying Biomembranes by Photoaffinity Labeling. Chem Rev 2013; 113:7880-929. [DOI: 10.1021/cr300419p] [Citation(s) in RCA: 64] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Yi Xia
- Aix-Marseille Université, Centre Interdisciplinaire de Nanoscience de Marseille, CNRS UMR 7325, Campus de Luminy, 13288 Marseille, France
| | - Ling Peng
- Aix-Marseille Université, Centre Interdisciplinaire de Nanoscience de Marseille, CNRS UMR 7325, Campus de Luminy, 13288 Marseille, France
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Abstract
Syntheses of new benzophenone-containing fatty acids (FABPs) 1, 5, and 6 and a new route to FABP 3 are described. Combined with the known 2 and 4, these FABPs comprise a set of photoactivatable fatty acid analogues with the crosslinking site at defined distances from the carboxylic acid hydroxyl group oxygen atoms ranging from 7.9 to 25.0 A.
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Affiliation(s)
- Yonghong Gan
- Department of Chemistry, Dartmouth College, Hanover, New Hampshire 03755, USA
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Peng Q, Xia Y, Qu F, Wu X, Campese D, Peng L. Synthesis of a photoactivatable phospholipidic probe containing tetrafluorophenylazide. Tetrahedron Lett 2005. [DOI: 10.1016/j.tetlet.2005.06.125] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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6
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Fredriksen SB, Dollé V, Yamamoto M, Nakatani Y, Goeldner M, Ourisson G. Increased Selectivity of a Simple Photosensitive Probe in the Presence of Large Proportions of Cholesterol. ACTA ACUST UNITED AC 2003. [DOI: 10.1002/anie.199411761] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Quesada E, Acuña AU, Amat-Guerri F. New Transmembrane Polyene Bolaamphiphiles as Fluorescent Probes in Lipid Bilayers. Angew Chem Int Ed Engl 2001; 40:2095-2097. [DOI: 10.1002/1521-3773(20010601)40:11<2095::aid-anie2095>3.0.co;2-i] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2000] [Revised: 02/26/2001] [Indexed: 11/07/2022]
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Nakatani Y, Yamamoto M, Diyizou Y, Warnock W, Dollé V, Hahn W, Milon A, Ourisson G. Studies on the Topography of Biomembranes: Regioselective Photolabelling in Vesicles with the Tandem Use of Cholesterol and a Photoactivable Transmembrane Phospholipidic Probe. Chemistry 1996. [DOI: 10.1002/chem.19960020204] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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10
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Peng L, Alcaraz ML, Klotz P, Kotzyba-Hibert F, Goeldner M. Photochemical labeling of membrane-associated and channel-forming domains of proteins directed by energy transfer. FEBS Lett 1994; 346:127-31. [PMID: 7515826 DOI: 10.1016/0014-5793(94)00392-0] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
Singlet-singlet energy transfer reactions from excited tryptophan residues to photoactivatable probes possessing a suitable chromophore, generate reactive species in the vicinity of the protein, leading to its covalent labeling. This delayed labeling process can be used to map the membrane-surrounded regions of proteins with improved efficiency when it is applied with appropriate photoactivatable phospholipids. The same principle could also be applied to the labeling of channel-forming transmembrane domains of ion channels, provided that suitable photoactivatable permeant ions were available. Both applications will be discussed with regard to their potential and feasibility.
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Affiliation(s)
- L Peng
- Laboratoire de Chimie Bio-organique, URA 1386 CNRS, Faculté de Pharmacie, Université Louis Pasteur Strasbourg, Illkirch, France
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Fredriksen SB, Dollé V, Yamamoto M, Nakatani Y, Goeldner M, Ourisson G. Selektivitätserhöhung einer einfachen photosensitiven Sonde in Gegenwart großer Mengen Cholesterin. Angew Chem Int Ed Engl 1994. [DOI: 10.1002/ange.19941061115] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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12
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Affiliation(s)
- F Paltauf
- Institut für Biochemie und Lebensmittelchemie der Technischen Universität Graz, Austria
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13
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Yamamoto M, Warnock WA, Milon A, Nakatani Y, Ourisson G. Selektive Photomarkierung in der Mitte von Doppelschichten mit einer photosensitiven Transmembransonde. Angew Chem Int Ed Engl 1993. [DOI: 10.1002/ange.19931050236] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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16
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Beck A, Heissler D, Duportail G. 1,1′-Thionyldi-imidazole in the synthesis of a long-chain phospholipidc membrane probe. ACTA ACUST UNITED AC 1990. [DOI: 10.1039/c39900000031] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Peculiar membrane morphologies of archaebacterial lipid models: 1,1′-polymethylenebis(2-alkyl-sn-glycero-3-phosphocholine). ACTA ACUST UNITED AC 1989. [DOI: 10.1016/0005-2760(89)90249-x] [Citation(s) in RCA: 48] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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