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de Figueiredo FL, de Oliveira ACP, Terrasan CRF, Gonçalves TA, Gerhardt JA, Tomazetto G, Persinoti GF, Rubio MV, Peña JAT, Araújo MF, de Carvalho Silvello MA, Franco TT, Rabelo SC, Goldbeck R, Squina FM, Damasio A. Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:96. [PMID: 33865436 PMCID: PMC8052766 DOI: 10.1186/s13068-021-01945-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 04/01/2021] [Indexed: 05/19/2023]
Abstract
BACKGROUND Wood-decay basidiomycetes are effective for the degradation of highly lignified and recalcitrant plant substrates. The degradation of lignocellulosic materials by brown-rot strains is carried out by carbohydrate-active enzymes and non-enzymatic Fenton mechanism. Differences in the lignocellulose catabolism among closely related brown rots are not completely understood. Here, a multi-omics approach provided a global understanding of the strategies employed by L. sulphureus ATCC 52600 for lignocellulose degradation. RESULTS The genome of Laetiporus sulphureus ATCC 52600 was sequenced and phylogenomic analysis supported monophyletic clades for the Order Polyporales and classification of this species within the family Laetiporaceae. Additionally, the plasticity of its metabolism was revealed in growth analysis on mono- and disaccharides, and polysaccharides such as cellulose, hemicelluloses, and polygalacturonic acid. The response of this fungus to the presence of lignocellulosic substrates was analyzed by transcriptomics and proteomics and evidenced the occurrence of an integrated oxidative-hydrolytic metabolism. The transcriptomic profile in response to a short cultivation period on sugarcane bagasse revealed 125 upregulated transcripts, which included CAZymes (redox enzymes and hemicellulases) as well as non-CAZy redox enzymes and genes related to the synthesis of low-molecular-weight compounds. The exoproteome produced in response to extended cultivation time on Avicel, and steam-exploded sugarcane bagasse, sugarcane straw, and Eucalyptus revealed 112 proteins. Contrasting with the mainly oxidative profile observed in the transcriptome, the secretomes showed a diverse hydrolytic repertoire including constitutive cellulases and hemicellulases, in addition to 19 upregulated CAZymes. The secretome induced for 7 days on sugarcane bagasse, representative of the late response, was applied in the saccharification of hydrothermally pretreated grass (sugarcane straw) and softwood (pine) by supplementing a commercial cocktail. CONCLUSION This study shows the singularity of L. sulphureus ATCC 52600 compared to other Polyporales brown rots, regarding the presence of cellobiohydrolase and peroxidase class II. The multi-omics analysis reinforces the oxidative-hydrolytic metabolism involved in lignocellulose deconstruction, providing insights into the overall mechanisms as well as specific proteins of each step.
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Affiliation(s)
- Fernanda Lopes de Figueiredo
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Ana Carolina Piva de Oliveira
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil
- Brazilian Biorenewables National Laboratory (LNBr), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil
| | - Cesar Rafael Fanchini Terrasan
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Thiago Augusto Gonçalves
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil
- Department of Technological and Environmental Processes, University of Sorocaba (UNISO), Sorocaba, SP, Brazil
| | - Jaqueline Aline Gerhardt
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Geizecler Tomazetto
- Department of Biological and Chemical Engineering (BCE), Aarhus University, 8200, Aarhus, Denmark
| | - Gabriela Felix Persinoti
- Brazilian Biorenewables National Laboratory (LNBr), Brazilian Center for Research in Energy and Materials (CNPEM), Campinas, SP, Brazil
| | - Marcelo Ventura Rubio
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | | | | | | | - Telma Teixeira Franco
- Interdisciplinary Center of Energy Planning (NIPE), University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Sarita Cândida Rabelo
- Department of Bioprocess and Biotechnology, College of Agricultural Sciences, São Paulo State University (UNESP), Botucatu, SP, Brazil
| | - Rosana Goldbeck
- Department of Food Engineering, Faculty of Food Engineering, University of Campinas (UNICAMP), Campinas, SP, Brazil
| | - Fabio Marcio Squina
- Department of Technological and Environmental Processes, University of Sorocaba (UNISO), Sorocaba, SP, Brazil.
| | - André Damasio
- Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, SP, Brazil.
- São Paulo Fungal Group, São Paulo, Brazil.
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Kumla J, Suwannarach N, Sujarit K, Penkhrue W, Kakumyan P, Jatuwong K, Vadthanarat S, Lumyong S. Cultivation of Mushrooms and Their Lignocellulolytic Enzyme Production Through the Utilization of Agro-Industrial Waste. Molecules 2020; 25:molecules25122811. [PMID: 32570772 PMCID: PMC7355594 DOI: 10.3390/molecules25122811] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 06/13/2020] [Accepted: 06/15/2020] [Indexed: 12/18/2022] Open
Abstract
A large amount of agro-industrial waste is produced worldwide in various agricultural sectors and by different food industries. The disposal and burning of this waste have created major global environmental problems. Agro-industrial waste mainly consists of cellulose, hemicellulose and lignin, all of which are collectively defined as lignocellulosic materials. This waste can serve as a suitable substrate in the solid-state fermentation process involving mushrooms. Mushrooms degrade lignocellulosic substrates through lignocellulosic enzyme production and utilize the degraded products to produce their fruiting bodies. Therefore, mushroom cultivation can be considered a prominent biotechnological process for the reduction and valorization of agro-industrial waste. Such waste is generated as a result of the eco-friendly conversion of low-value by-products into new resources that can be used to produce value-added products. Here, we have produced a brief review of the current findings through an overview of recently published literature. This overview has focused on the use of agro-industrial waste as a growth substrate for mushroom cultivation and lignocellulolytic enzyme production.
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Affiliation(s)
- Jaturong Kumla
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Nakarin Suwannarach
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Kanaporn Sujarit
- Division of Biology, Faculty of Science and Technology, Rajamangala University of Technology Thanyaburi, Thanyaburi, Pathumthani 12110, Thailand;
| | - Watsana Penkhrue
- School of Preclinic, Institute of Science, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand;
- Center of Excellence in Microbial Technology for Agricultural Industry, Suranaree University of Technology, Nakhon Ratchasima 30000, Thailand
| | - Pattana Kakumyan
- School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand;
| | - Kritsana Jatuwong
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Santhiti Vadthanarat
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
| | - Saisamorn Lumyong
- Research Center of Microbial Diversity and Sustainable Utilization, Chiang Mai University, Chiang Mai 50200, Thailand; (J.K.); (N.S.); (K.J.); (S.V.)
- Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200, Thailand
- Academy of Science, The Royal Society of Thailand, Bangkok 10300, Thailand
- Correspondence: ; Tel.: +668-1881-3658
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3
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Valadares F, Gonçalves TA, Damasio A, Milagres AM, Squina FM, Segato F, Ferraz A. The secretome of two representative lignocellulose-decay basidiomycetes growing on sugarcane bagasse solid-state cultures. Enzyme Microb Technol 2019; 130:109370. [PMID: 31421724 DOI: 10.1016/j.enzmictec.2019.109370] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2019] [Revised: 06/27/2019] [Accepted: 07/02/2019] [Indexed: 12/14/2022]
Abstract
Secretome evaluations of lignocellulose-decay basidiomycetes can reveal new enzymes in selected fungal species that degrade specific substrates. Proteins discovered in such studies can support biorefinery development. Brown-rot (Gloeophyllum trabeum) and white-rot (Pleurotus ostreatus) fungi growing in sugarcane bagasse solid-state cultures produced 119 and 63 different extracellular proteins, respectively. Several of the identified enzymes are suitable for in vitro biomass conversion, including a range of cellulases (endoglucanases, cellobiohydrolases and β-glucosidases), hemicellulases (endoxylanases, α-arabinofuranosidases, α-glucuronidases and acetylxylan esterases) and carbohydrate-active auxiliary proteins, such as AA9 lytic polysaccharide monooxygenase, AA1 laccase and AA2 versatile peroxidase. Extracellular oxalate decarboxylase was also detected in both fungal species, exclusively in media containing sugarcane bagasse. Interestingly, intracellular AA6 quinone oxidoreductases were also exclusively produced under sugarcane bagasse induction in both fungi. These enzymes promote quinone redox cycling, which is used to produce Fenton's reagents by lignocellulose-decay fungi. Hitherto undiscovered hypothetical proteins that are predicted in lignocellulose-decay fungi genomes appeared in high relative abundance in the cultures containing sugarcane bagasse, which suggests undisclosed, new biochemical mechanisms that are used by lignocellulose-decay fungi to degrade sugarcane biomass. In general, lignocellulose-decay fungi produce a number of canonical hydrolases, as well as some newly observed enzymes, that are suitable for in vitro biomass digestion in a biorefinery context.
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Affiliation(s)
- Fernanda Valadares
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, 12602-810, Lorena, SP, Brazil
| | - Thiago A Gonçalves
- Programa de Processos Tecnológicos e Ambientais, Universidade de Sorocaba, 18023-000 Sorocaba, SP, Brazil; Institute of Biology, University of Campinas (UNICAMP), 13080-655, Campinas, SP, Brazil
| | - André Damasio
- Institute of Biology, University of Campinas (UNICAMP), 13080-655, Campinas, SP, Brazil
| | - Adriane Mf Milagres
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, 12602-810, Lorena, SP, Brazil
| | - Fabio M Squina
- Programa de Processos Tecnológicos e Ambientais, Universidade de Sorocaba, 18023-000 Sorocaba, SP, Brazil
| | - Fernando Segato
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, 12602-810, Lorena, SP, Brazil
| | - André Ferraz
- Departamento de Biotecnologia, Escola de Engenharia de Lorena, Universidade de São Paulo, 12602-810, Lorena, SP, Brazil.
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4
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Multicopper oxidases: Biocatalysts in microbial pathogenesis and stress management. Microbiol Res 2019; 222:1-13. [DOI: 10.1016/j.micres.2019.02.007] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 01/03/2019] [Accepted: 02/14/2019] [Indexed: 02/08/2023]
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5
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Voběrková S, Solčány V, Vršanská M, Adam V. Immobilization of ligninolytic enzymes from white-rot fungi in cross-linked aggregates. CHEMOSPHERE 2018; 202:694-707. [PMID: 29602102 DOI: 10.1016/j.chemosphere.2018.03.088] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 12/22/2017] [Accepted: 03/12/2018] [Indexed: 05/20/2023]
Abstract
Ligninolytic enzymes from white-rot fungi are widely used in biotechnological processes. However, the application of these enzymes as free enzymes is limited due to their instability and lack of reusability. Enzyme stabilization is therefore a major challenge in biocatalytic process research, and immobilization methods are desirable. Using cross-linked enzyme aggregates (CLEAs) such as magnetic CLEAs, porous-CLEAs and combi-CLEAs is a promising technique for overcoming these issues. Cross-linking methods can stabilize and immobilize enzymes by interconnecting enzyme molecules via multiple bonds using cross-linking agents such as glutaraldehyde. The high catalyst density and microporous assembly of CLEAs guarantee high catalyst activity, which, together with their long shelf life, operational stability, and reusability, provide a cost-efficient alternative to matrix-assisted immobilization approaches. Here, we review current progress in ligninolytic enzyme immobilization and provide a comprehensive review of CLEAs. Moreover, we summarize the use of these CLEAs for biocatalysis processes, bioremediation such as dye decolourization, wastewater treatment or pharmaceutically active compound elimination.
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Affiliation(s)
- Stanislava Voběrková
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic
| | - Veronika Solčány
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic
| | - Martina Vršanská
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic
| | - Vojtěch Adam
- Department of Chemistry and Biochemistry, Mendel University in Brno, Zemedelska 1, CZ-613 00, Brno, Czech Republic; Central European Institute of Technology, Brno University of Technology, Purkynova 123, CZ-612 00, Brno, Czech Republic.
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6
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Bai Z, Ma Q, Dai Y, Yuan H, Ye J, Yu W. Spatial Heterogeneity of SOM Concentrations Associated with White-rot Versus Brown-rot Wood Decay. Sci Rep 2017; 7:13758. [PMID: 29062128 PMCID: PMC5653805 DOI: 10.1038/s41598-017-14181-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2017] [Accepted: 10/05/2017] [Indexed: 11/08/2022] Open
Abstract
White- and brown-rot fungal decay via distinct pathways imparts characteristic molecular imprints on decomposing wood. However, the effect that a specific wood-rotting type of fungus has on proximal soil organic matter (SOM) accumulation remains unexplored. We investigated the potential influence of white- and brown-rot fungi-decayed Abies nephrolepis logs on forest SOM stocks (i.e., soil total carbon (C) and nitrogen (N)) and the concentrations of amino sugars (microbial necromass) at different depths and horizontal distances from decaying woody debris. The brown-rot fungal wood decay resulted in higher concentrations of soil C and N and a greater increase in microbial necromass (i.e., 1.3- to 1.7-fold greater) than the white-rot fungal wood decay. The white-rot sets were accompanied by significant differences in the proportions of the bacterial residue index (muramic acid%) with soil depth; however, the brown-rot-associated soils showed complementary shifts, primarily in fungal necromass, across horizontal distances. Soil C and N concentrations were significantly correlated with fungal rather than bacterial necromass in the brown-rot systems. Our findings confirmed that the brown-rot fungi-dominated degradation of lignocellulosic residues resulted in a greater SOM buildup than the white-rot fungi-dominated degradation.
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Affiliation(s)
- Zhen Bai
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Qiang Ma
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China.
| | - Yucheng Dai
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Haisheng Yuan
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Ji Ye
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China
| | - Wantai Yu
- Institute of Applied Ecology, Chinese Academy of Sciences, Shenyang, 110016, China.
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7
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Yang R, Liu Y, Zhou Z, Sheng J, Meng D. Microelectric Current Treatment Enhanced Biodegradation of Pumpkin Lignocelluloses by Trichoderma reesei RUT-C30. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:4668-4675. [PMID: 28537388 DOI: 10.1021/acs.jafc.7b00902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
A homemade microcurrent reactor was used to treat the fermentation of Trichoderma reesei. Results indicated that the yield of saccharides for T. reesei RUT-C30 cultivated in pumpkin lignocellulose broth reaches 38.86% (w/w) when a microcurrent treatment (20 mA, at the 48th hour for 60 min) was carried out, which is significantly higher than the control group (p < 0.05). Additionally, activities of endoglucanase, cellobiohydrolase, xylanase, and pectinase were significantly increased in days 3-7. Furthermore, the fungal growth was facilitated by microelectric treatment, showing a 0.57-fold increase of spore numbers at the sixth day of cultivation. Besides, the monosaccharide composition, including glucose (1.03 mg/mL), xylose (0.12 mg/mL), arabinose (0.31 mg/mL), and fructose (0.13 mg/mL), extracted from the reactor was higher than that without the current treatment. In this work, we improved the biodegradation of lignocellulosic wastes by applying a microcurrent to lignocellulose-degrading fungal cultures and provided a new idea for the lignocellulose material pretreatment and bioconversion.
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Affiliation(s)
- Rui Yang
- Key Laboratory of Food Nutrition and Safety, Ministry of Education, Tianjin University of Science and Technology , Tianjin 300457, People's Republic of China
- Tianjin Food Safety & Low Carbon Manufacturing Collaborative Innovation Center , Tianjin 300457, People's Republic of China
| | - Yuqian Liu
- Key Laboratory of Food Nutrition and Safety, Ministry of Education, Tianjin University of Science and Technology , Tianjin 300457, People's Republic of China
| | - Zhongkai Zhou
- Key Laboratory of Food Nutrition and Safety, Ministry of Education, Tianjin University of Science and Technology , Tianjin 300457, People's Republic of China
- Tianjin Food Safety & Low Carbon Manufacturing Collaborative Innovation Center , Tianjin 300457, People's Republic of China
| | - Jiping Sheng
- School of Agricultural Economics and Rural Development, Renmin University of China , Beijing 100872, People's Republic of China
| | - Demei Meng
- Key Laboratory of Food Nutrition and Safety, Ministry of Education, Tianjin University of Science and Technology , Tianjin 300457, People's Republic of China
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8
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Mishra V, Jana AK, Jana MM, Gupta A. Improvement of selective lignin degradation in fungal pretreatment of sweet sorghum bagasse using synergistic CuSO 4-syringic acid supplements. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2017; 193:558-566. [PMID: 28262421 DOI: 10.1016/j.jenvman.2017.02.057] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2016] [Revised: 01/23/2017] [Accepted: 02/21/2017] [Indexed: 05/28/2023]
Abstract
Sweet sorghum bagasse (SSB) generated in large quantities could be hydrolyzed to sugar and then fermented to green fuels. The hydrolysis of SSB polysaccharides interlocked in recalcitrant lignin network is the major problem. Pretreatment of SSB in SSF by using Coriolus versicolor with CuSO4-syringic acid supplements for effects on production of ligninocellulolytic enzymes, lignin degradation and selectivity values (SV) were studied. C. versicolor was selected based on high ligninolytic and low cellulolytic abilily. Individually, CuSO4 increased the activities of laccase (4.9 folds) and PPO (1.9 folds); syringic acid increased LiP (13 folds), AAO (2.8 folds) and laccase (5.6 folds) resulting in increased lignin degradation and SVs. Combined syringic acid (4.4 μmol g-1 SSB) and CuSO4 (4.4 μmol g-1 SSB) increased the activities of laccase, LiP, MnP, PPO and AAO by 11.2, 17.6, 2.8, 2.4 and 2.3 folds respectively due to synergistic effect, resulting in maximum lignin degradation 35.9 ± 1.3% (w w-1) (1.86 fold) and highest SV 3.07 (4.7 fold). Enzymatic hydrolysis of pretreated SSB yielded higher (∼2.2 times) fermentable sugar. Pretreated SSB was characterized by XRD, SEM, FTIR and TGA/DTG analysis to confirm results. It is possible to improve fungal pretreatment of agricultural waste by combination of supplements.
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Affiliation(s)
- Vartika Mishra
- Department of Biotechnology, Dr B R A National Institute of Technology, Jalandhar, 144011, Punjab, India
| | - Asim K Jana
- Department of Biotechnology, Dr B R A National Institute of Technology, Jalandhar, 144011, Punjab, India.
| | - Mithu Maiti Jana
- Department of Chemistry, Dr B R A National Institute of Technology, Jalandhar, 144011, Punjab, India
| | - Antriksh Gupta
- Department of Biotechnology, Dr B R A National Institute of Technology, Jalandhar, 144011, Punjab, India
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9
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Huynh TT, Jamil I, Pianegonda NA, Blanksby SJ, Barker PJ, Manefield M, Rice SA. Investigation of the microbial communities colonizing prepainted steel used for roofing and walling. Microbiologyopen 2016; 6. [PMID: 27998037 PMCID: PMC5387312 DOI: 10.1002/mbo3.425] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Revised: 09/24/2016] [Accepted: 10/12/2016] [Indexed: 11/06/2022] Open
Abstract
Microbial colonization of prepainted steel, commonly used in roofing applications, impacts their aesthetics, durability, and functionality. Understanding the relevant organisms and the mechanisms by which colonization occurs would provide valuable information that can be subsequently used to design fouling prevention strategies. Here, next-generation sequencing and microbial community finger printing (T-RFLP) were used to study the community composition of microbes colonizing prepainted steel roofing materials at Burrawang, Australia and Kapar, Malaysia over a 52-week period. Community diversity was low and was dominated by Bacillus spp., cyanobacteria, actinobacteria, Cladosporium sp., Epicoccum nigrum, and Teratosphaeriaceae sp. Cultivation-based methods isolated approximately 20 different fungi and bacteria, some of which, such as E. nigrum and Cladosporium sp., were represented in the community sequence data. Fluorescence in situ hybridization imaging showed that fungi were the most dominant organisms present. Analysis of the sequence and T-RFLP data indicated that the microbial communities differed significantly between locations and changed significantly over time. The study demonstrates the utility of molecular ecology tools to identify and characterize microbial communities associated with the fouling of painted steel surfaces and ultimately can enable the targeted development of control strategies based on the dominant species responsible for fouling.
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Affiliation(s)
- Tran T Huynh
- The Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW, Australia
| | - Ili Jamil
- The Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW, Australia.,The School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, NSW, Australia
| | - Nicole A Pianegonda
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, Wollongong, NSW, Australia.,BlueScope Innovation, Port Kembla, NSW, Australia
| | - Stephen J Blanksby
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, Wollongong, NSW, Australia.,Central Analytical Research Facility, Queensland University of Technology, Brisbane, QLD, Australia
| | - Philip J Barker
- ARC Centre of Excellence for Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, Wollongong, NSW, Australia.,BlueScope Innovation, Port Kembla, NSW, Australia
| | - Mike Manefield
- The School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, NSW, Australia
| | - Scott A Rice
- The Centre for Marine Bio-Innovation, The University of New South Wales, Sydney, NSW, Australia.,The School of Biological, Earth and Environmental Sciences, The University of New South Wales, Sydney, NSW, Australia.,The Singapore Centre for Environmental Life Sciences Engineering and the School of Biological Sciences, Nanyang Technological University, Singapore
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10
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Zhou S, Raouche S, Grisel S, Navarro D, Sigoillot JC, Herpoël-Gimbert I. Solid-state fermentation in multi-well plates to assess pretreatment efficiency of rot fungi on lignocellulose biomass. Microb Biotechnol 2015; 8:940-9. [PMID: 26249037 PMCID: PMC4621447 DOI: 10.1111/1751-7915.12307] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2014] [Revised: 06/01/2015] [Accepted: 06/10/2015] [Indexed: 12/01/2022] Open
Abstract
The potential of fungal pretreatment to improve fermentable sugar yields from wheat straw or Miscanthus was investigated. We assessed 63 fungal strains including 53 white-rot and 10 brown-rot fungi belonging to the Basidiomycota phylum in an original 12 day small-scale solid-state fermentation (SSF) experiment using 24-well plates. This method offers the convenience of one-pot processing of samples from SSF to enzymatic hydrolysis. The comparison of the lignocellulolytic activity profiles of white-rot fungi and brown-rot fungi showed different behaviours. The hierarchical clustering according to glucose and reducing sugars released from each biomass after 72 h enzymatic hydrolysis splits the set of fungal strains into three groups: efficient, no-effect and detrimental-effect species. The efficient group contained 17 species belonging to seven white-rot genera and one brown-rot genus. The yield of sugar released increased significantly (max. 62%) compared with non-inoculated controls for both substrates.
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Affiliation(s)
- Simeng Zhou
- INRA, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,Aix-Marseille Université, Polytech Marseille, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France
| | - Sana Raouche
- INRA, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,Aix-Marseille Université, Polytech Marseille, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France
| | - Sacha Grisel
- INRA, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,Aix-Marseille Université, Polytech Marseille, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France
| | - David Navarro
- INRA, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,Aix-Marseille Université, Polytech Marseille, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,International Centre for Microbial Resources collection-Filamentous Fungi, CIRM-CF, F-13009, Marseille, France
| | - Jean-Claude Sigoillot
- INRA, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,Aix-Marseille Université, Polytech Marseille, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France
| | - Isabelle Herpoël-Gimbert
- INRA, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France.,Aix-Marseille Université, Polytech Marseille, UMR 1163 Biodiversity and Biotechnology of Fungi, F-13009, Marseille, France
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11
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An H, Wei D, Xiao T. Transcriptional profiles of laccase genes in the brown rot fungus Postia placenta MAD-R-698. J Microbiol 2015; 53:606-15. [DOI: 10.1007/s12275-015-4705-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2014] [Revised: 06/16/2015] [Accepted: 06/23/2015] [Indexed: 10/23/2022]
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12
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Metabolite secretion, Fe3+-reducing activity and wood degradation by the white-rot fungus Trametes versicolor ATCC 20869. Fungal Biol 2014; 118:935-42. [DOI: 10.1016/j.funbio.2014.08.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2014] [Revised: 08/21/2014] [Accepted: 08/22/2014] [Indexed: 11/24/2022]
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13
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14
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Arantes V, Goodell B. Current Understanding of Brown-Rot Fungal Biodegradation Mechanisms: A Review. ACS SYMPOSIUM SERIES 2014. [DOI: 10.1021/bk-2014-1158.ch001] [Citation(s) in RCA: 79] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Affiliation(s)
- Valdeir Arantes
- University of British Columbia, 4035-2424 Main Mall, V6T 1Z4, Vancouver BC, Canada
- Virginia Polytechnic Institute and State University (Virginia Tech), 216 ICTAS II Building (0917), 1075 Life Sciences Circle, Blacksburg VA 24061, United States
| | - Barry Goodell
- University of British Columbia, 4035-2424 Main Mall, V6T 1Z4, Vancouver BC, Canada
- Virginia Polytechnic Institute and State University (Virginia Tech), 216 ICTAS II Building (0917), 1075 Life Sciences Circle, Blacksburg VA 24061, United States
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Jeyakumar D, Chirsteen J, Doble M. Synergistic effects of pretreatment and blending on fungi mediated biodegradation of polypropylenes. BIORESOURCE TECHNOLOGY 2013; 148:78-85. [PMID: 24045194 DOI: 10.1016/j.biortech.2013.08.074] [Citation(s) in RCA: 70] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2013] [Revised: 08/09/2013] [Accepted: 08/12/2013] [Indexed: 05/28/2023]
Abstract
Environmental issues raise concern on restrict the use of nondegradable polymers and encourage the development of degradable once. This study is carried out was to understand the rate of biodegradation of untreated and pretreated (100°C or UV for 10 days) polypropylene (PP), pro-oxidant blended (MI-PP) and starch blended polypropylenes (ST-PP) with two different fungal strains, Phanerochaete chrysosporium NCIM 1170 (F1) and Engyodontium album MTP091 (F2). About 18.8% and 9.42% gravimetric weight loss and 79% and 57% TGA weight loss (at 400°C) were observed with UV pretreated MI-PP in 1 year with F2 and F1 strains respectively. The amount of lacasse produced by the organism and biomass attached on the polymer surface are correlated with TGA weight loss (0.6-0.93). The formation of extractable oxygenated compounds and unoxidized low-molecular weight hydrocarbons are high in pretreated and blended samples. These results indicate blending and pretreatment strategy leads to an optimal waste-disposal strategy.
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Affiliation(s)
- D Jeyakumar
- Bioengineering and Drug Design Lab, Department of Biotechnology, Indian Institute of Technology Madras, Chennai, Tamilnadu 600036, India; Centre of Excellence In Envriromental Studies, King Abdulaziz University, Jeddah-21589, Saudi Arabia
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16
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Chandel AK, Gonçalves BCM, Strap JL, da Silva SS. Biodelignification of lignocellulose substrates: An intrinsic and sustainable pretreatment strategy for clean energy production. Crit Rev Biotechnol 2013; 35:281-93. [DOI: 10.3109/07388551.2013.841638] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
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17
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Yang R, Meng D, Hu X, Ni Y, Li Q. Saccharification of pumpkin residues by coculturing of Trichoderma reesei RUT-C30 and Phanerochaete chrysosporium Burdsall with delayed inoculation timing. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2013; 61:9192-9. [PMID: 24020787 DOI: 10.1021/jf402199j] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Trichoderma reesei and Phanerochaete chrysosporium with different lignocellulose-degrading enzyme systems have received much attention due to their ability to biodegrade lignocellulosic biomass. However, the synergistic effect of the two fungi on lignocellulose degradation is unknown. Herein, a cocultivation of T. reesei RUT-C30 and P. chrysosporium Burdsall for biodegradation of lignocellulosic pumpkin residues (PRS) was developed to produce soluble saccharide. Results indicated that a cocultivation of the two fungi with P. chrysosporium Burdsall inoculation delayed for 1.5 days produced the highest saccharide yield of 53.08% (w/w), and only 20.83% (w/w) of PRS were left after one batch of fermentation. In addition, this strategy increased the activities of secreted cellulases (endoglucanase, cellobiohydrolase, and β-glucosidase) and ligninases (lignin peroxidase and manganese peroxidase), which correlated to the increased saccharide yield. Besides, the resulting monosaccharides including glucose (1.23 mg/mL), xylose (0.13 mg/mL), arabinose (0.46 mg/mL), and fructose (0.21 mg/mL) from cocultures exhibited much higher yields than those from monoculture, which provides basal information for further fermentation research. This bioconversion of PRS into soluble sugars by cocultured fungal species provides a low cost method based on lignocellulose for potential biofuels or other bioproduct production.
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Affiliation(s)
- Rui Yang
- College of Food Science and Nutritional Engineering, China Agricultural University , China Key Laboratory of Fruit and Vegetable Processing, Ministry of Agriculture, China Research Center for Fruit and Vegetable Processing Engineering, Ministry of Education, Beijing 100083, China
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18
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Mathieu Y, Gelhaye E, Dumarçay S, Gérardin P, Harvengt L, Buée M. Selection and validation of enzymatic activities as functional markers in wood biotechnology and fungal ecology. J Microbiol Methods 2013. [DOI: 10.1016/j.mimet.2012.11.017] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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19
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Fungal pretreatment of lignocellulosic biomass. Biotechnol Adv 2012; 30:1447-57. [DOI: 10.1016/j.biotechadv.2012.03.003] [Citation(s) in RCA: 230] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2011] [Revised: 01/25/2012] [Accepted: 03/06/2012] [Indexed: 10/28/2022]
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20
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Arantes V, Jellison J, Goodell B. Peculiarities of brown-rot fungi and biochemical Fenton reaction with regard to their potential as a model for bioprocessing biomass. Appl Microbiol Biotechnol 2012; 94:323-38. [DOI: 10.1007/s00253-012-3954-y] [Citation(s) in RCA: 220] [Impact Index Per Article: 18.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2011] [Revised: 02/06/2012] [Accepted: 02/07/2012] [Indexed: 11/24/2022]
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21
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Du W, Yu H, Song L, Zhang J, Weng C, Ma F, Zhang X. The promoting effect of byproducts from Irpex lacteus on subsequent enzymatic hydrolysis of bio-pretreated cornstalks. BIOTECHNOLOGY FOR BIOFUELS 2011; 4:37. [PMID: 21985037 PMCID: PMC3238224 DOI: 10.1186/1754-6834-4-37] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2011] [Accepted: 10/11/2011] [Indexed: 05/10/2023]
Abstract
BACKGROUND Irpex lacteus, a versatile lignin-degrading fungus with various extracellular enzymes, has been widely used for biological pretreatment. However, most studies have focused on the change of substrate structure after biological pretreatment, and the effect of these changes on the enzymatic hydrolysis, but the effect of byproducts from biological pretreatment process on subsequent enzymatic hydrolysis is not well understood. METHODS We developed a biological pretreatment process with I. lacteus that can produce stimulatory byproducts that enhance the enzymatic hydrolysis of cornstalks. RESULTS The maximum hydrolysis yield of glucan (82%) was obtained after pretreatment for 28 days. The maximum reducing sugar yield decreased from 313.5 to 200.1 mg/g raw cornstalks after water-soluble byproducts of biological pretreatment were removed from pretreated cornstalks. The effect of byproducts on enzymatic hydrolysis was also investigated. We found that the hydrolysis efficiency of commercial cellulase preparation on cornstalks could be improved by water extracts from bio-pretreated cornstalks with hydrolytic enzyme activity and iron-reducing activity. CONCLUSION The key finding suggested that byproducts from biological pretreatment play important roles in enhancing downstream hydrolysis, which might be attributable to hydrolytic enzymes and iron-reducing compounds produced by I. lacteus.
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Affiliation(s)
- Wanqing Du
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Hongbo Yu
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Lili Song
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Ji Zhang
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Changlong Weng
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Fuying Ma
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
| | - Xiaoyu Zhang
- School of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China
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22
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Ma F, Wang J, Zeng Y, Yu H, Yang Y, Zhang X. Influence of the co-fungal treatment with two white rot fungi on the lignocellulosic degradation and thermogravimetry of corn stover. Process Biochem 2011. [DOI: 10.1016/j.procbio.2011.05.020] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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23
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Shrestha P, Khanal SK, Pometto AL, Hans van Leeuwen J. Ethanol production via in situ fungal saccharification and fermentation of mild alkali and steam pretreated corn fiber. BIORESOURCE TECHNOLOGY 2010; 101:8698-8705. [PMID: 20624677 DOI: 10.1016/j.biortech.2010.06.089] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2010] [Revised: 06/10/2010] [Accepted: 06/20/2010] [Indexed: 05/29/2023]
Abstract
The effect of mild alkali and steam pretreatments on fungal saccharification and sequential simultaneous-saccharification and fermentation (SSF) of corn fiber to ethanol was studied. The corn fiber was pretreated with: (i) 2% NaOH (w/w) at 30 degrees C for 2h and (ii) steaming at 100 degrees C for 2h. Ethanol yields were 2.6g, 2.9g and 5.5g ethanol/100g of corn fiber, respectively, for Phanerochaete chrysosporium, Gloeophyllum trabeum and Trichoderma reesei saccharification and sequential SSFs. SSF with commercial cellulase enzyme - Spezyme-CP had 7.7g ethanol/100g corn fiber. Mild alkali pretreatment resulted in higher glucose yields following fungal saccharification of corn fiber. However, the ethanol yields were comparatively similar for untreated and mild alkali pretreated corn fiber. Solid-substrate fermentation of corn fiber with fungi can be improved to either eliminate or reduce the dosage of commercial cellulase enzymes during SSF.
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Affiliation(s)
- Prachand Shrestha
- Department of Civil, Construction, and Environmental Engineering, Iowa State University, Ames, IA 50011, USA.
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24
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Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions. J Ind Microbiol Biotechnol 2010; 38:541-55. [DOI: 10.1007/s10295-010-0798-2] [Citation(s) in RCA: 128] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2010] [Accepted: 07/22/2010] [Indexed: 11/26/2022]
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25
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Wan C, Li Y. Microbial delignification of corn stover by Ceriporiopsis subvermispora for improving cellulose digestibility. Enzyme Microb Technol 2010. [DOI: 10.1016/j.enzmictec.2010.04.001] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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26
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Xu C, Ma F, Zhang X. Lignocellulose degradation and enzyme production by Irpex lacteus CD2 during solid-state fermentation of corn stover. J Biosci Bioeng 2009; 108:372-5. [DOI: 10.1016/j.jbiosc.2009.04.023] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2009] [Revised: 04/28/2009] [Accepted: 04/30/2009] [Indexed: 10/20/2022]
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27
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Lee JW, Park JY, Kwon M, Choi IG. Purification and characterization of a thermostable xylanase from the brown-rot fungus Laetiporus sulphureus. J Biosci Bioeng 2009; 107:33-7. [PMID: 19147106 DOI: 10.1016/j.jbiosc.2008.09.006] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2008] [Accepted: 09/05/2008] [Indexed: 11/17/2022]
Abstract
A thermostable extracellular xylanase was purified and characterized from brown-rot basidiomycete Laetiporus sulphureus, cultivated on biologically pretreated Pinus densiflora biomass. After three consecutive purification steps using DEAE, Mono Q, and Superdex 75 columns, the xylanase specific activity was found to be 72.4 U/mg, nine fold higher than that of the crude culture solution, purity was 96%, and the molecular mass determined to be 69.3 kDa. The optimal pH and temperature for xylanase activity were 3.0 and 80 degrees C, respectively. Although activity of xylanase was highest at 80 degrees C, it showed highest thermostability at 60 degrees C, retaining approximately 97% of its relative activity following incubation for 4 h. In the presence of 5 mM solution of CaCl2, the relative xylanase activity increased by 35.9%; however, it decreased significantly in the presence of 10 mM solution of Cu2+. Among the xylan-based substrates tested, purified L. sulphureus xylanase showed the highest activity on beechwood xylan. Thin-layer chromatography (TLC) experiments revealed that purified L. sulphureus xylanase is an endoxylanase that hydrolyzes xylotriose, xylotetraose, and xylopentaose but not xylobiose.
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Affiliation(s)
- Jae-Won Lee
- Department of Forest Sciences, College of Agriculture and Life Sciences, Seoul National University, San 56-1 Sillim-dong, Gwanak-gu, Seoul 151-921, South Korea
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Elisashvili V, Kachlishvili E, Tsiklauri N, Metreveli E, Khardziani T, Agathos SN. Lignocellulose-degrading enzyme production by white-rot Basidiomycetes isolated from the forests of Georgia. World J Microbiol Biotechnol 2008. [DOI: 10.1007/s11274-008-9897-x] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Elisashvili V, Kachlishvili E, Penninckx M. Effect of growth substrate, method of fermentation, and nitrogen source on lignocellulose-degrading enzymes production by white-rot basidiomycetes. J Ind Microbiol Biotechnol 2008; 35:1531-8. [PMID: 18716810 DOI: 10.1007/s10295-008-0454-2] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2008] [Accepted: 07/30/2008] [Indexed: 10/21/2022]
Abstract
The exploration of seven physiologically different white rot fungi potential to produce cellulase, xylanase, laccase, and manganese peroxidase (MnP) showed that the enzyme yield and their ratio in enzyme preparations significantly depends on the fungus species, lignocellulosic growth substrate, and cultivation method. The fruit residues were appropriate growth substrates for the production of hydrolytic enzymes and laccase. The highest endoglucanase (111 U ml(-1)) and xylanase (135 U ml(-1)) activities were revealed in submerged fermentation (SF) of banana peels by Pycnoporus coccineus. In the same cultivation conditions Cerrena maxima accumulated the highest level of laccase activity (7,620 U l(-1)). The lignified materials (wheat straw and tree leaves) appeared to be appropriate for the MnP secretion by majority basidiomycetes. With few exceptions, SF favored to hydrolases and laccase production by fungi tested whereas SSF was appropriate for the MnP accumulation. Thus, the Coriolopsis polyzona hydrolases activity increased more than threefold, while laccase yield increased 15-fold when tree leaves were undergone to SF instead SSF. The supplementation of nitrogen to the control medium seemed to have a negative effect on all enzyme production in SSF of wheat straw and tree leaves by Pleurotus ostreatus. In SF peptone and ammonium containing salts significantly increased C. polyzona and Trametes versicolor hydrolases and laccase yields. However, in most cases the supplementation of media with additional nitrogen lowered the fungi specific enzyme activities. Especially strong repression of T. versicolor MnP production was revealed.
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Affiliation(s)
- Vladimir Elisashvili
- Durmishidze Institute of Biochemistry and Biotechnology, 10 km Agmashenebeli kheivani, 0159, Tbilisi, Georgia.
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Lee JW, Kim HY, Koo BW, Choi DH, Kwon M, Choi IG. Enzymatic saccharification of biologically pretreated Pinus densiflora using enzymes from brown rot fungi. J Biosci Bioeng 2008; 106:162-7. [DOI: 10.1263/jbb.106.162] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2007] [Accepted: 05/13/2008] [Indexed: 11/17/2022]
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Elisashvili V, Penninckx M, Kachlishvili E, Tsiklauri N, Metreveli E, Kharziani T, Kvesitadze G. Lentinus edodes and Pleurotus species lignocellulolytic enzymes activity in submerged and solid-state fermentation of lignocellulosic wastes of different composition. BIORESOURCE TECHNOLOGY 2008; 99:457-62. [PMID: 17350827 DOI: 10.1016/j.biortech.2007.01.011] [Citation(s) in RCA: 121] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/18/2006] [Revised: 07/10/2006] [Accepted: 01/23/2007] [Indexed: 05/14/2023]
Abstract
Lentinus edodes and Pleurotus species from various origins were compared for the first time for their ability to produce lignocellulolytic enzyme in solid-state (SSF) and submerged (SF) fermentation of various plant raw material. Fungi cultivation in identical culture conditions revealed wide differences among both species and strains of the same species. The yields of CMCase (62.3Uml(-1)), xylanase (84.1 U ml(-1)), FPA (5.9 U ml(-1)), and laccase (4103 Ul(-1)) are the best so far obtained with the strains of oyster mushrooms. The study pointed out that the nature of lignocellulosic material and the method of fungi cultivation are factors determining the expression of lignocellulolytic potential of fungi as well as the ratio of individual enzymes in enzyme complex. SSF of tree leaves is favorable for laccase and MnP secretion by the majority L. edodes and Pleurotus strains, whereas SF provides better production of hydrolytic enzymes.
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Affiliation(s)
- Vladimir Elisashvili
- Durmishidze Institute of Biochemistry and Biotechnology, Academy of Sciences of Georgia, 10km Agmashenebeli Alley, 0159 Tbilisi, Georgia
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Levin L, Villalba L, Da Re V, Forchiassin F, Papinutti L. Comparative studies of loblolly pine biodegradation and enzyme production by Argentinean white rot fungi focused on biopulping processes. Process Biochem 2007. [DOI: 10.1016/j.procbio.2007.03.008] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Vicentim MP, Ferraz A. Enzyme production and chemical alterations of Eucalyptus grandis wood during biodegradation by Ceriporiopsis subvermispora in cultures supplemented with Mn2+, corn steep liquor and glucose. Enzyme Microb Technol 2007. [DOI: 10.1016/j.enzmictec.2006.05.021] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Magalhães PO, Ferraz A, Milagres AFM. Enzymatic properties of two β-glucosidases from Ceriporiopsis subvermispora produced in biopulping conditions. J Appl Microbiol 2006; 101:480-6. [PMID: 16882157 DOI: 10.1111/j.1365-2672.2006.02946.x] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
AIMS Ceriporiopsis subvermispora produces endoglucanase and beta-glucosidase when cultivated on cellulose or wood, but biodegradation of cellulose during biopulping by C. subvermispora is low even after long periods. To resolve this discrepancy, we grew C. subvermispora on Pinus taeda wood chips and purified the major beta-glucosidases it produced. Kinetic parameters were determined to clear if this fungus produces enzymes capable of yielding assimilable glucose from wood. METHODS AND RESULTS Ceriporiopsis subvermispora was grown on P. taeda wood chips under solid-state fermentation. After 30 days, the crude extract obtained from enzyme extraction with sodium acetate buffer 50 mmol l(-1), pH 5.4, was filtrated in membranes with a molecular mass exclusion limit of 100 kDa. Enzyme purification was carried out using successively Sephacryl S-300 gel filtration. The retained fraction attained 76% of beta-glucosidase activity with 3.7-fold purification. Two beta-glucosidases were detected with molecular mass of 110 and 53 kDa. We have performed a characterization of the enzymatic properties of the beta-glucosidase of 110 kDa. The optimum pH and temperature were 3.5 and 60 degrees C, respectively. The K(m) and V(max) values were respectively 3.29 mmol l(-1) and 0.113 micromol min(-1) for the hydrolysis of p-nitrophenyl-beta-glucopyranoside (pNPG) and 2.63 mmol l(-1) and 0.103 micromol min(-1), towards cellobiose. beta-Glucosidase activity was strongly increased by Mn(2+) and Fe(3+), while Cu(2+) severely inhibited it. CONCLUSIONS Ceriporiopsis subvermispora produces small amounts of beta-glucosidase when grown on wood. The gel filtration and polyacrylamide gel electrophoresis data revealed the existence of two beta-glucosidases with 110 and 53 kDa. The 110 kDa beta-glucosidase from C. subvermispora can be efficiently purified in a single step by gel filtration chromatography. The enzyme has an acid pH optimum with similar activity on pNPG and cellobiose and is thus typical beta-glucosidase. SIGNIFICANCE AND IMPACT OF THE STUDY Ceriporiopsis subvermispora produces beta-glucosidase with limited action during wood decay making able its use for the production of biomechanical and biochemical pulps. The results presented in this paper show the importance of studying the behaviour of beta-glucosidases during biopulping.
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Affiliation(s)
- P O Magalhães
- Departamento de Biotecnologia, Faculdade de Engenharia Química de Lorena, Lorena, SP, Brazil.
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36
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Characterization of hemicellulases and cellulases produced by Ceriporiopsis subvermispora grown on wood under biopulping conditions. Enzyme Microb Technol 2006. [DOI: 10.1016/j.enzmictec.2005.06.015] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Milagres AMF, Magalhães PO, Ferraz A. Purification and properties of a xylanase from Ceriporiopsis subvermispora cultivated on Pinus taeda. FEMS Microbiol Lett 2005; 253:267-72. [PMID: 16243455 DOI: 10.1016/j.femsle.2005.09.055] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2005] [Revised: 09/23/2005] [Accepted: 09/27/2005] [Indexed: 11/18/2022] Open
Abstract
The production of hemicellulose and cellulose degrading enzymes by the white-rot fungus Ceriporiopsis subvermispora was determined while growing in Pinus taeda wood chips. Enzymes produced by the fungus were extracted after 30 days of cultivation and at least two different xylanases were secreted. An endo-(1,4)-beta-xylanase was purified by means of ultrafiltration, anion exchange chromatography and gel filtration. Its molecular mass was 29 kDa and the pH and temperature optima were 5.0 and 60 degrees C, respectively. The endo-xylanase was able to hydrolyze xylan to principally xylotriose and xylotetraose and it has different activities against different xylans. With birchwood xylan as substrate, the enzyme showed a K(m) of 1.93 mg/ml and specific activity of 538 units/mg protein at 50 degrees C.
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Affiliation(s)
- A M F Milagres
- Departamento de Biotecnologia, Faculdade de Engenharia Química de Lorena-Faenquil, Lorena-SP, CP 116 CEP 12 600 970, Brazil.
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Cohen R, Suzuki MR, Hammel KE. Processive endoglucanase active in crystalline cellulose hydrolysis by the brown rot basidiomycete Gloeophyllum trabeum. Appl Environ Microbiol 2005; 71:2412-7. [PMID: 15870328 PMCID: PMC1087581 DOI: 10.1128/aem.71.5.2412-2417.2005] [Citation(s) in RCA: 106] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Brown rot basidiomycetes have long been thought to lack the processive cellulases that release soluble sugars from crystalline cellulose. On the other hand, these fungi remove all of the cellulose, both crystalline and amorphous, from wood when they degrade it. To resolve this discrepancy, we grew Gloeophyllum trabeum on microcrystalline cellulose (Avicel) and purified the major glycosylhydrolases it produced. The most abundant extracellular enzymes in these cultures were a 42-kDa endoglucanase (Cel5A), a 39-kDa xylanase (Xyn10A), and a 28-kDa endoglucanase (Cel12A). Cel5A had significant Avicelase activity--4.5 nmol glucose equivalents released/min/mg protein. It is a processive endoglucanase, because it hydrolyzed Avicel to cellobiose as the major product while introducing only a small proportion of reducing sugars into the remaining, insoluble substrate. Therefore, since G. trabeum is already known to produce a beta-glucosidase, it is now clear that this brown rot fungus produces enzymes capable of yielding assimilable glucose from crystalline cellulose.
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Affiliation(s)
- Roni Cohen
- Department of Bacteriology, University of Wisconsin, , Madison, WI 537026, USA
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de Souza-Cruz PB, Freer J, Siika-Aho M, Ferraz A. Extraction and determination of enzymes produced by Ceriporiopsis subvermispora during biopulping of Pinus taeda wood chips. Enzyme Microb Technol 2004. [DOI: 10.1016/j.enzmictec.2003.10.005] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Molecular weight distribution of wood components extracted from Pinus taeda biotreated by Ceriporiopsis subvermispora. Enzyme Microb Technol 2003. [DOI: 10.1016/s0141-0229(03)00099-1] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Ferraz A, Córdova AM, Machuca A. Wood biodegradation and enzyme production by Ceriporiopsis subvermispora during solid-state fermentation of Eucalyptus grandis. Enzyme Microb Technol 2003. [DOI: 10.1016/s0141-0229(02)00267-3] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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