1
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Fabrication and characterization of cold-set large yellow croaker (Pseudosciaena crocea) roe protein isolate gels. Lebensm Wiss Technol 2022. [DOI: 10.1016/j.lwt.2022.113135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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3
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Petrova AA, Kozlova LV, Gaifullina IZ, Ananchenko BA, Martinson EA, Mikshina PV, Gorshkova TA. AFM analysis reveals polymorphism of purified flax rhamnogalacturonans I of distinct functional types. Carbohydr Polym 2019; 216:238-246. [DOI: 10.1016/j.carbpol.2019.03.087] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2019] [Revised: 03/08/2019] [Accepted: 03/25/2019] [Indexed: 02/03/2023]
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4
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5
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A nanostructural view of the cell wall disassembly process during fruit ripening and postharvest storage by atomic force microscopy. Trends Food Sci Technol 2019. [DOI: 10.1016/j.tifs.2018.02.011] [Citation(s) in RCA: 83] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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6
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Chen J, Chen W, Duan F, Tang Q, Li X, Zeng L, Zhang J, Xing Z, Dong Y, Jia L, Gao H. The synergistic gelation of okra polysaccharides with kappa-carrageenan and its influence on gel rheology, texture behaviour and microstructures. Food Hydrocoll 2019. [DOI: 10.1016/j.foodhyd.2018.08.003] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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7
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Abstract
The glycosaminoglycan hyaluronan (HA) is a key component of the microenvironment surrounding cells. In healthy tissues, HA molecules have extremely high molecular mass and consequently large hydrodynamic volumes. Tethered to the cell surface by clustered receptor proteins, HA molecules crowd each other, as well as other macromolecular species. This leads to severe nonideality in physical properties of the biomatrix, because steric exclusion leads to an increase in effective concentration of the macromolecules. The excluded volume depends on both polymer concentration and hydrodynamic volume/molecular mass. The biomechanical properties of the extracellular matrix, tissue hydration, receptor clustering, and receptor-ligand interactions are strongly affected by the presence of HA and by its molecular mass. In inflammation, reactive oxygen and nitrogen species fragment the HA chains. Depending on the rate of chain degradation relative to the rates of new synthesis and removal of damaged chains, short fragments of the HA molecules can be present at significant levels. Not only are the physical properties of the extracellular matrix affected, but the HA fragments decluster their primary receptors and act as endogenous danger signals. Bioanalytical methods to isolate and quantify HA fragments have been developed to determine profiles of HA content and size in healthy and diseased biological fluids and tissues. These methods have potential use in medical diagnostic tests. Therapeutic agents that modulate signaling by HA fragments show promise in wound healing and tissue repair without fibrosis.
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Affiliation(s)
- Mary K Cowman
- Tandon School of Engineering, New York University, New York, NY, United States
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Gao J, Lin L, Sun B, Zhao M. Comparison Study on Polysaccharide Fractions from Laminaria japonica: Structural Characterization and Bile Acid Binding Capacity. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2017; 65:9790-9798. [PMID: 29023123 DOI: 10.1021/acs.jafc.7b04033] [Citation(s) in RCA: 74] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Our previous study has suggested that the crude polysaccharide obtained from Laminaria japonica by acid assisted extraction (LP-A) have significant bile acid-binding capacity, which probably ascribed to its specific structure characterization. The relationship between structure characterization and bile acid-binding capacity of the purified LP-A fractions are still unknown. This paper conducted a comparison study on the structure characterization and bile acid-binding capacity of three LP-A fractions (LP-A4, LP-A6, and LP-A8). The results indicated that LP-A4, LP-A6, and LP-A8, characterized as mannoglucan, fucomannoglucan, and fucogalactan, had significantly different structure characterization. Furthermore, the bile acid-binding capacity of LP-A8 was obviously higher than the other fractions, which may be attributed to its highly branched structure, abundant sulfate, fucose, and galactose in chemical composition and denser interconnected macromolecule network in molecular morphology. This study provides scientific evidence for the potential utilization of LP-A8 as an attractive functional food supplement candidate for the hyperlipidemia population.
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Affiliation(s)
- Jie Gao
- School of Food Science and Engineering, South China University of Technology , Guangzhou 510640, P. R. China
- Guangdong Food Green Processing and Nutrition Regulation Technologies Research Center , Guangzhou 510640, P. R. China
| | - Lianzhu Lin
- School of Food Science and Engineering, South China University of Technology , Guangzhou 510640, P. R. China
- Guangdong Food Green Processing and Nutrition Regulation Technologies Research Center , Guangzhou 510640, P. R. China
| | - Baoguo Sun
- Beijing Advanced Innovation Center for Food Nutrition and Human Health, Beijing Technology & Business University , Beijing 100048, P. R. China
| | - Mouming Zhao
- School of Food Science and Engineering, South China University of Technology , Guangzhou 510640, P. R. China
- Beijing Advanced Innovation Center for Food Nutrition and Human Health, Beijing Technology & Business University , Beijing 100048, P. R. China
- Guangdong Food Green Processing and Nutrition Regulation Technologies Research Center , Guangzhou 510640, P. R. China
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Gao J, Lin L, Sun B, Zhao M. A comparison study on polysaccharides extracted from Laminaria japonica using different methods: structural characterization and bile acid-binding capacity. Food Funct 2017; 8:3043-3052. [PMID: 28805835 DOI: 10.1039/c7fo00218a] [Citation(s) in RCA: 105] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
In this study, the structural characterization and bile acid-binding capacity of Laminaria japonica polysaccharides (LP), obtained by seven different extraction methods, were investigated. The results indicated that extraction methods exhibited significant effects on extraction yield, molecular weight, monosaccharide composition and the content of neutral sugar, fucose, uronic acid and sulfate of LP. AFM analysis indicated that LP extracted by different methods exhibited certain different, flexible and worm-like chains with many branches. Rheological measurements showed that the LP, obtained by pressurized hot water extraction and acid assisted extraction, exhibited lower viscosity due to their lower molecular weight, compared to other extracted polysaccharides. The bile acid-binding capacity of acid assisted extracted LP was significantly higher than other LP samples tested, which was probably ascribed to its highly branched structure, low molecular weight, low viscosity and abundant uronic acid and fucose in total monosaccharides. The present study provides scientific evidence and advances in the preparation technology and a method for evaluating hypolipidemic activities of L. japonica polysaccharides.
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Affiliation(s)
- Jie Gao
- School of Food Science and Engineering, South China University of Technology, Guangzhou 510640, China
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10
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Xu X, Xue C, Chang Y, Chen F, Wang J. Conformational and physicochemical properties of fucosylated chondroitin sulfate from sea cucumber Apostichopus japonicus. Carbohydr Polym 2016; 152:26-32. [DOI: 10.1016/j.carbpol.2016.06.061] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2016] [Revised: 06/04/2016] [Accepted: 06/15/2016] [Indexed: 10/21/2022]
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11
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Chain conformational and physicochemical properties of fucoidans from sea cucumber. Carbohydr Polym 2016; 152:433-440. [DOI: 10.1016/j.carbpol.2016.06.093] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Revised: 06/20/2016] [Accepted: 06/24/2016] [Indexed: 01/04/2023]
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12
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Shao L, Wu Z, Tian F, Zhang H, Liu Z, Chen W, Guo B. Molecular characteristics of an exopolysaccharide from Lactobacillus rhamnosus KF5 in solution. Int J Biol Macromol 2015; 72:1429-34. [DOI: 10.1016/j.ijbiomac.2014.10.015] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2014] [Revised: 10/02/2014] [Accepted: 10/07/2014] [Indexed: 01/17/2023]
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13
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Paniagua C, Posé S, Morris VJ, Kirby AR, Quesada MA, Mercado JA. Fruit softening and pectin disassembly: an overview of nanostructural pectin modifications assessed by atomic force microscopy. ANNALS OF BOTANY 2014; 114:1375-83. [PMID: 25063934 PMCID: PMC4195560 DOI: 10.1093/aob/mcu149] [Citation(s) in RCA: 111] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2013] [Accepted: 05/28/2014] [Indexed: 05/18/2023]
Abstract
BACKGROUND One of the main factors that reduce fruit quality and lead to economically important losses is oversoftening. Textural changes during fruit ripening are mainly due to the dissolution of the middle lamella, the reduction of cell-to-cell adhesion and the weakening of parenchyma cell walls as a result of the action of cell wall modifying enzymes. Pectins, major components of fruit cell walls, are extensively modified during ripening. These changes include solubilization, depolymerization and the loss of neutral side chains. Recent evidence in strawberry and apple, fruits with a soft or crisp texture at ripening, suggests that pectin disassembly is a key factor in textural changes. In both these fruits, softening was reduced as result of antisense downregulation of polygalacturonase genes. Changes in pectic polymer size, composition and structure have traditionally been studied by conventional techniques, most of them relying on bulk analysis of a population of polysaccharides, and studies focusing on modifications at the nanostructural level are scarce. Atomic force microscopy (AFM) allows the study of individual polymers at high magnification and with minimal sample preparation; however, AFM has rarely been employed to analyse pectin disassembly during fruit ripening. SCOPE In this review, the main features of the pectin disassembly process during fruit ripening are first discussed, and then the nanostructural characterization of fruit pectins by AFM and its relationship with texture and postharvest fruit shelf life is reviewed. In general, fruit pectins are visualized under AFM as linear chains, a few of which show long branches, and aggregates. Number- and weight-average values obtained from these images are in good agreement with chromatographic analyses. Most AFM studies indicate reductions in the length of individual pectin chains and the frequency of aggregates as the fruits ripen. Pectins extracted with sodium carbonate, supposedly located within the primary cell wall, are the most affected.
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Affiliation(s)
- Candelas Paniagua
- Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora' (IHSM-UMA-CSIC), Departamento de Biología Vegetal, Universidad de Málaga, 29071, Málaga, Spain
| | - Sara Posé
- Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora' (IHSM-UMA-CSIC), Departamento de Biología Vegetal, Universidad de Málaga, 29071, Málaga, Spain
| | - Victor J Morris
- Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, UK
| | - Andrew R Kirby
- Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, UK
| | - Miguel A Quesada
- Departamento de Biología Vegetal, Universidad de Málaga, 29071, Málaga, Spain
| | - José A Mercado
- Instituto de Hortofruticultura Subtropical y Mediterránea 'La Mayora' (IHSM-UMA-CSIC), Departamento de Biología Vegetal, Universidad de Málaga, 29071, Málaga, Spain
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14
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Schefer L, Adamcik J, Mezzenga R. Unravelling Secondary Structure Changes on Individual Anionic Polysaccharide Chains by Atomic Force Microscopy. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201402855] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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15
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Schefer L, Adamcik J, Mezzenga R. Unravelling secondary structure changes on individual anionic polysaccharide chains by atomic force microscopy. Angew Chem Int Ed Engl 2014; 53:5376-9. [PMID: 24740853 DOI: 10.1002/anie.201402855] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Indexed: 11/07/2022]
Abstract
The structural conformations of the anionic carrageenan polysaccharides in the presence of monovalent salt close to physiological conditions are studied by atomic force microscopy. Iota-carrageenan undergoes a coil-helix transition at high ionic strength, whereas lambda-carrageenan remains in the coiled state. Polymer statistical analysis reveals an increase in persistence length from 22.6±0.2 nm in the random coil, to 26.4±0.2 nm in the ordered helical conformation, indicating an increased rigidity of the helical iota-carrageenan chains. The many decades-long debated issue on whether the ordered state can exist as single or double helix, is conclusively resolved by demonstrating the existence of a unimeric helix formed intramolecularly by a single polymer chain.
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Affiliation(s)
- Larissa Schefer
- Food & Soft Materials Science, Institute of Food, Nutrition & Health, Department of Health Sciences & Technology, ETH Zürich, Schmelzbergstraße 9, LFO E23, 8092 Zürich (Switzerland) http://www.ifnh.ethz.ch/lwm
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16
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Zhang M, Tang X, Wang F, Zhang Q, Zhang Z. Characterization of Lycium barbarum polysaccharide and its effect on human hepatoma cells. Int J Biol Macromol 2013; 61:270-5. [PMID: 23817098 DOI: 10.1016/j.ijbiomac.2013.06.031] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Revised: 05/22/2013] [Accepted: 06/22/2013] [Indexed: 11/27/2022]
Abstract
To investigate structure-bioactivity relationship of LBP, Lycium barbarum polysaccharide (LBP) was extracted and separated into five fractions using ultrafiltration membrane method. Then the effects of these polysaccharide fractions on human liver cancer cells (SMMC-7721) were observed by MTT assay, LSCM and FCM. And the components, molecular weight and conformation of LBP fractions were analyzed by GC, HPLC and AFM. The results showed that LBP-a8, LBP-a3, LBP-a1 and LBP-a4 could inhibit the proliferation of SMMC-7721 cells in a concentration and time dependent manner. But LBP-p8 could promote the growth of SMMC-7721 cells. LBP-a4 (10.2 kDa), which consists of uronic acid (11.5%), protein (0.34%) and neutral sugar (39.02%), could arrest SMMC-7721 cells at G0/G1 phase and enhance the intracellular Ca(2+) concentration significantly. Nevertheless, LBP-p8 (6.50×10(3) kDa), which consists of uronic acid (13.4%), protein (4.77%) and neutral sugar (26.26%), did not change the cell cycle and Ca(2+) concentration in cytoplasm significantly. The molecular conformation of LBP-a4 and LBP-p8 was spherical and flocculent molecular shape, respectively, suggesting that spherical molecular shape was benefit to LBP's apoptosis inducing activity while flocculent molecular shape did not have that function.
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Affiliation(s)
- Min Zhang
- Key Laboratory of Food Nutrition and Safety (Tianjin University of Science & Technology), Ministry of Education, Tianjin 300457, China.
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17
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Sokolova E, Chusovitin E, Barabanova A, Balagan S, Galkin N, Yermak I. Atomic force microscopy imaging of carrageenans from red algae of Gigartinaceae and Tichocarpaceae families. Carbohydr Polym 2013; 93:458-65. [DOI: 10.1016/j.carbpol.2012.12.026] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2012] [Revised: 12/11/2012] [Accepted: 12/16/2012] [Indexed: 10/27/2022]
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18
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Patel BK, Campanella OH, Janaswamy S. Impact of urea on the three-dimensional structure, viscoelastic and thermal behavior of iota-carrageenan. Carbohydr Polym 2012; 92:1873-9. [PMID: 23399231 DOI: 10.1016/j.carbpol.2012.11.026] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2012] [Revised: 10/19/2012] [Accepted: 11/08/2012] [Indexed: 11/17/2022]
Abstract
Urea breaks hydrogen bonds among biopolymers leading to structural destabilization. In the case of hydrocolloids urea addition is thought to impact gelation. Detailed information about its pertinent role on influencing the structure-function relationships of hydrocolloids is still elusive, however. The present investigation is aimed at delineating hydrocolloids structural behavior in the presence of urea employing iota-carrageenan as a model system. X-ray fiber diffraction, rheological and thermal properties of two iota-carrageenan solutions with weight concentrations 4.5 and 6.0% (w/w) at two urea molar concentrations (0.5 and 2.0 M) with and without heat treatments have been analyzed. X-ray results suggest that the canonical double helical structural arrangement of iota-carrageenan is maintained even after urea addition. However, improved crystallinity, ordering and altered unit cell dimensions especially with heat treatments of the binary mixtures indicate the promotion of favorable interactions among carrageenan helices in the presence of urea. Increased elastic modulus and onset temperature of melting endotherm with the heat treatment compared to cold addition further attests the X-ray observations of enhanced structural ordering. Overall, results suggest that urea molecules synergistically aid iota-carrageenan interactions and stabilize structure of junction zones. Our findings are deemed to be helpful in the design and development of novel non-food applications of hydrocolloids.
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Affiliation(s)
- Bhavesh K Patel
- Department of Agricultural and Biological Engineering, Purdue University, West Lafayette, IN 47907-2093, USA
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19
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Jiang TY, Ci YP, Chou WI, Lee YC, Sun YJ, Chou WY, Li KM, Chang MDT. Two unique ligand-binding clamps of Rhizopus oryzae starch binding domain for helical structure disruption of amylose. PLoS One 2012; 7:e41131. [PMID: 22815939 PMCID: PMC3398936 DOI: 10.1371/journal.pone.0041131] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2012] [Accepted: 06/17/2012] [Indexed: 11/30/2022] Open
Abstract
The N-terminal starch binding domain of Rhizopus oryzae glucoamylase (RoSBD) has a high binding affinity for raw starch. RoSBD has two ligand-binding sites, each containing a ligand-binding clamp: a polyN clamp residing near binding site I is unique in that it is expressed in only three members of carbohydrate binding module family 21 (CBM21) members, and a Y32/F58 clamp located at binding site II is conserved in several CBMs. Here we characterized different roles of these sites in the binding of insoluble and soluble starches using an amylose-iodine complex assay, atomic force microscopy, isothermal titration calorimetry, site-directed mutagenesis, and structural bioinformatics. RoSBD induced the release of iodine from the amylose helical cavity and disrupted the helical structure of amylose type III, thereby significantly diminishing the thickness and length of the amylose type III fibrils. A point mutation in the critical ligand-binding residues of sites I and II, however, reduced both the binding affinity and amylose helix disruption. This is the first molecular model for structure disruption of the amylose helix by a non-hydrolytic CBM21 member. RoSBD apparently twists the helical amylose strands apart to expose more ligand surface for further SBD binding. Repeating the process triggers the relaxation and unwinding of amylose helices to generate thinner and shorter amylose fibrils, which are more susceptible to hydrolysis by glucoamylase. This model aids in understanding the natural roles of CBMs in protein-glycan interactions and contributes to potential molecular engineering of CBMs.
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Affiliation(s)
- Ting-Ying Jiang
- Institute of Molecular and Cellular Biology and Department of Medical Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
| | - Yuan-Pei Ci
- Institute of Molecular and Cellular Biology and Department of Medical Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
| | - Wei-I Chou
- Institute of Molecular and Cellular Biology and Department of Medical Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
- Simpson Biotech Company, Ltd., Taoyuan County, Taiwan, Republic of China
| | - Yuan-Chuan Lee
- Institute of Molecular and Cellular Biology and Department of Medical Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
- Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States of America
| | - Yuh-Ju Sun
- Institute of Bioinformatics and Structural Biology and Department of Life Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
| | - Wei-Yao Chou
- Department of Computer Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
| | - Kun-Mou Li
- Institute of Bioinformatics and Structural Biology and Department of Life Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
| | - Margaret Dah-Tsyr Chang
- Institute of Molecular and Cellular Biology and Department of Medical Science, National Tsing Hua University, Hsinchu, Taiwan, Republic of China
- * E-mail:
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Characterization of bacterial polysaccharide capsules and detection in the presence of deliquescent water by atomic force microscopy. Appl Environ Microbiol 2012; 78:3476-9. [PMID: 22344657 DOI: 10.1128/aem.00207-12] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
We detected polysaccharide capsules from Zunongwangia profunda SM-A87 with atomic force microscopy (AFM). The molecular organization of the capsules at the single-polysaccharide-chain level was reported. Furthermore, we found that with ScanAsyst mode the polysaccharide capsules could be detected even in the presence of deliquescent water covering the capsule.
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Asare EK, Jaiswal S, Maley J, Båga M, Sammynaiken R, Rossnagel BG, Chibbar RN. Barley grain constituents, starch composition, and structure affect starch in vitro enzymatic hydrolysis. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2011; 59:4743-54. [PMID: 21462932 DOI: 10.1021/jf200054e] [Citation(s) in RCA: 98] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/09/2023]
Abstract
The relationship between starch physical properties and enzymatic hydrolysis was determined using ten different hulless barley genotypes with variable carbohydrate composition. The ten barley genotypes included one normal starch (CDC McGwire), three increased amylose starches (SH99250, SH99073, and SB94893), and six waxy starches (CDC Alamo, CDC Fibar, CDC Candle, Waxy Betzes, CDC Rattan, and SB94912). Total starch concentration positively influenced thousand grain weight (TGW) (r(2) = 0.70, p < 0.05). Increase in grain protein concentration was not only related to total starch concentration (r(2) = -0.80, p < 0.01) but also affected enzymatic hydrolysis of pure starch (r(2) = -0.67, p < 0.01). However, an increase in amylopectin unit chain length between DP 12-18 (F-II) was detrimental to starch concentration (r(2) = 0.46, p < 0.01). Amylose concentration influenced granule size distribution with increased amylose genotypes showing highly reduced volume percentage of very small C-granules (<5 μm diameter) and significantly increased (r(2) = 0.83, p < 0.01) medium sized B granules (5-15 μm diameter). Amylose affected smaller (F-I) and larger (F-III) amylopectin chains in opposite ways. Increased amylose concentration positively influenced the F-III (DP 19-36) fraction of longer DP amylopectin chains (DP 19-36) which was associated with resistant starch (RS) in meal and pure starch samples. The rate of starch hydrolysis was high in pure starch samples as compared to meal samples. Enzymatic hydrolysis rate both in meal and pure starch samples followed the order waxy > normal > increased amylose. Rapidly digestible starch (RDS) increased with a decrease in amylose concentration. Atomic force microscopy (AFM) analysis revealed a higher polydispersity index of amylose in CDC McGwire and increased amylose genotypes which could contribute to their reduced enzymatic hydrolysis, compared to waxy starch genotypes. Increased β-glucan and dietary fiber concentration also reduced the enzymatic hydrolysis of meal samples. An average linkage cluster analysis dendrogram revealed that variation in amylose concentration significantly (p < 0.01) influenced resistant starch concentration in meal and pure starch samples. RS is also associated with B-type granules (5-15 μm) and the amylopectin F-III (19-36 DP) fraction. In conclusion, the results suggest that barley genotype SH99250 with less decrease in grain weight in comparison to that of other increased amylose genotypes (SH99073 and SH94893) could be a promising genotype to develop cultivars with increased amylose grain starch without compromising grain weight and yield.
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Affiliation(s)
- Eric K Asare
- Department of Plant Sciences, University of Saskatchewan, Saskatoon, SK, Canada
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Maley J, Asare EK, Båga M, Rossnagel BG, Chibbar RN, Sammynaiken R. Application of aerosol-spray deposition for determination of fine structure of barley starch using atomic force microscopy. STARCH-STARKE 2010. [DOI: 10.1002/star.201000005] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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23
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FUNAMI T. Atomic Force Microscopy Imaging of Food Polysaccharides. FOOD SCIENCE AND TECHNOLOGY RESEARCH 2010. [DOI: 10.3136/fstr.16.1] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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FUNAMI T. Atomic Force Microscopy Imaging of Food Polysaccharides in Relation to Rheological Properties. FOOD SCIENCE AND TECHNOLOGY RESEARCH 2010. [DOI: 10.3136/fstr.16.13] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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25
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Briones AV, Sato T. Encapsulation of glucose oxidase (GOD) in polyelectrolyte complexes of chitosan–carrageenan. REACT FUNCT POLYM 2010. [DOI: 10.1016/j.reactfunctpolym.2009.09.009] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Marieta C, Ibarburu I, Dueñas M, Irastorza A. Supramolecular structure and conformation of a (1-->3)(1-->2)-beta-D-glucan from Lactobacillus suebicus CUPV221 as observed by tapping mode atomic force microscopy. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2009; 57:6183-6188. [PMID: 19601662 DOI: 10.1021/jf900554c] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
Tapping mode atomic force microscopy (TM-AFM) has been used to analyze the supramolecular structure and conformation of the (1-->3)(1-->2)-beta-D-glucan produced by Lactobacillus suebicus CUPV221 isolated from cider. Solutions for TM-AFM observation were prepared by dispersing the solid glucan in distilled water and in alkaline aqueous solutions. It was found that from the distilled water at 10 mg/L or higher concentrations, the (1-->3)(1-->2)-beta-D-glucan forms networks. The heat resistance of the networks depends on the concentration. From the alkaline aqueous solutions, different supramolecular structures were observed depending on the pH. From the weakest alkaline solution, a fairly rough morphology with a high density of spikelike growth features was revealed. As the ionic force of the medium increased, the sizes of the spikelike growth features diminished, and even many disaggregated fibers could be found. At 0.4 M NaOH (pH 13.16), the aggregates had disappeared almost totally. NaOH aqueous solutions (0.1 and 0.4 M) were used to carry out the study of conformation. At 0.1 M NaOH, the aggregates were partially detached, and many free microfibers were found to which a helical conformation could be assigned due to their stiffness and rodlike character. At 0.4 M NaOH, the beginning of the dissociation of the helical structures was seen.
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Affiliation(s)
- Cristina Marieta
- Departamento de Quimica Aplicada, Facultad de Ciencias Quimicas, 20018 Donostia-San Sebastian.
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28
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Funami T, Noda S, Hiroe M, Asai I, Ikeda S, Nishinari K. Functions of iota-carrageenan on the gelatinization and retrogradation behaviors of corn starch in the presence or absence of various salts. Food Hydrocoll 2008. [DOI: 10.1016/j.foodhyd.2007.09.008] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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29
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Funami T, Noda S, Nakauma M, Ishihara S, Takahashi R, Al-Assaf S, Ikeda S, Nishinari K, Phillips GO. Molecular structures of gellan gum imaged with atomic force microscopy in relation to the rheological behavior in aqueous systems in the presence or absence of various cations. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2008; 56:8609-8618. [PMID: 18710244 DOI: 10.1021/jf8007713] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
Aqueous solutions of gellan gum with comparable molecular masses but with different acyl contents were investigated by atomic force microscopy and rheological measurements in the presence or absence of various cations. For a high-acyl sample, no continuous network structures were identified microscopically, except in the presence of Ca (2+), where structural inhomogeneity was the highest in terms of the height distribution of molecular assemblies. Rheological thermal hysteresis between sol-gel transitions was detected in the presence of K (+) and Ca (2+), particularly Ca (2+). The storage modulus at 20 degrees C was larger in the order Na (+) < Ca (2+) < K (+). For a low-acyl sample, continuous network structures were identified in the presence of each cation, involving greater thermal hysteresis than the corresponding data for the high-acyl sample. Structural homogeneity was the highest in the presence of K (+). Thermal hysteresis and elasticity of the system were discussed in terms of continuousness and homogeneity of network structures.
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Affiliation(s)
- Takahiro Funami
- Hydrocolloid Laboratory, San-Ei Gen F.F.I., Inc., 1-1-11 Sanwa-cho, Toyonaka, Osaka 561-8588, Japan.
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30
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Kolesov DV, Grigor’ev TE, Gavrilko DY, Makhaeva EE, Yaminskii IV, Khokhlov AR. AFM study of the structuration of an ionic surfactant and phenylalanine with κ-carrageenan. ACTA ACUST UNITED AC 2008. [DOI: 10.1134/s0033173208050056] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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31
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Noda S, Funami T, Nakauma M, Asai I, Takahashi R, Al-Assaf S, Ikeda S, Nishinari K, Phillips GO. Molecular structures of gellan gum imaged with atomic force microscopy in relation to the rheological behavior in aqueous systems. 1. Gellan gum with various acyl contents in the presence and absence of potassium. Food Hydrocoll 2008. [DOI: 10.1016/j.foodhyd.2007.06.007] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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32
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Funami T, Hiroe M, Noda S, Asai I, Ikeda S, Nishinari K. Influence of molecular structure imaged with atomic force microscopy on the rheological behavior of carrageenan aqueous systems in the presence or absence of cations. Food Hydrocoll 2007. [DOI: 10.1016/j.foodhyd.2006.07.013] [Citation(s) in RCA: 116] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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34
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Zhang M, Cui S, Cheung P, Wang Q. Antitumor polysaccharides from mushrooms: a review on their isolation process, structural characteristics and antitumor activity. Trends Food Sci Technol 2007. [DOI: 10.1016/j.tifs.2006.07.013] [Citation(s) in RCA: 512] [Impact Index Per Article: 30.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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35
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Abstract
Morphological and structural features of starch from potato (Solanum tuberosa) and rice (Oryza sativa) have been examined using atomic force microscopy. Amylose from potato and rice was observed in aggregated structures, which are suggested to be a result of retrogradation during sample preparation. The degrees of polymerization of amylose from potato and rice starches were calculated from the mean contour lengths of the observed structures to be approximately 1440 and 1860, respectively. Potato amylopectin appeared as a highly branched and extended molecule. Our results show that atomic force microscopy provides a useful method for examining the fine structural features and estimating the dimensions of starch molecules.
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Affiliation(s)
- J M C Dang
- Faculty of Agriculture, Food and Natural Resources, The University of Sydney, NSW 2006, Australia
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36
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Creek JA, Ziegler GR, Runt J. Amylose Crystallization from Concentrated Aqueous Solution. Biomacromolecules 2006; 7:761-70. [PMID: 16529412 DOI: 10.1021/bm050766x] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Maize amylose, separated from granular starch by means of an aqueous leaching process, was used to investigate spherulite formation from concentrated mixtures of starch in water. Amylose (10-20%, w/w) was found to form a spherulitic semicrystalline morphology over a wide range of cooling rates (1-250 degrees C/min), provided it was first heated to >170 degrees C. This is explained through the effect of temperature on chain conformation. A maximum quench temperature of approximately 70 degrees C was required to produce spherulitic morphology. Quench temperatures between 70 and 110 degrees C produced a gel-like morphology. This is explained on the basis of the relative kinetics of liquid-liquid phase separation vis-à-vis crystallization. The possibility of the presence of a liquid crystalline phase affecting the process of spherulite formation is discussed.
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Affiliation(s)
- John A Creek
- The Pennsylvania State University, 116 Borland Lab, University Park, 16801, USA
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37
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Cowman MK, Matsuoka S. Experimental approaches to hyaluronan structure. Carbohydr Res 2005; 340:791-809. [PMID: 15780246 DOI: 10.1016/j.carres.2005.01.022] [Citation(s) in RCA: 236] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2004] [Accepted: 01/10/2005] [Indexed: 12/17/2022]
Abstract
A review of the literature describing experimental studies on hyaluronan (HA) is presented. Methods sensitive to the hydrodynamic properties of HA, analyzed in neutral aqueous solution containing NaCl at physiological concentration, can be shown to fit the expected behavior of a high molecular weight linear semi-flexible polymer. The significant nonideality of HA solutions can be predicted by a simple treatment for hydrodynamic interactions between polymer chains. Nuclear magnetic resonance and circular dichroism studies of HA are also in agreement with a model incorporating dynamically formed and broken hydrogen bonds, contributing to the semi-flexibility of the polymer chain, and segmental motions on the nanosecond time scale. HA shows the capability for self-association in the formation of a viscoelastic putty state at pH 2.5 in the presence of salt, and a gel state at pH 2.5 in mixed organic/aqueous solution containing salt. Ordered and associated structures have also been observed for HA on the surfaces, especially in the presence of surface-structured water. These phenomena can be understood in terms of counterion-mediated polyelectrolyte interactions. The possibility that hyaluronan exists in vivo in environments that induce ordered structures and assemblies is discussed.
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Affiliation(s)
- Mary K Cowman
- Othmer Department of Chemical and Biological Sciences and Engineering, Polytechnic University, 6 Metrotech Center, Brooklyn, NY 11201, USA.
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38
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Spagnoli C, Korniakov A, Ulman A, Balazs EA, Lyubchenko YL, Cowman MK. Hyaluronan conformations on surfaces: effect of surface charge and hydrophobicity. Carbohydr Res 2005; 340:929-41. [PMID: 15780258 DOI: 10.1016/j.carres.2005.01.024] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2004] [Accepted: 01/20/2005] [Indexed: 11/20/2022]
Abstract
Extended, relaxed, condensed, and interacting forms of the polysaccharide hyaluronan have been observed by atomic force microscopy (AFM). The types of images obtained depend on the properties of the surfaces used. We have investigated several different surface conditions for HA imaging, including unmodified mica, mica chemically modified with two different kinds of amino-terminated silanes (3-aminopropyltriethoxysilane and N-trimethoxysilylpropyl-N,N,N-trimethylammonium chloride), and highly oriented pyrolytic graphite. We found the degree of HA molecular extension or condensation to be variable, and the number of bound chains per unit area was low, for all of the mica-based surfaces. HA was more easily imaged on graphite, a hydrophobic surface. Chains were frequently observed in high degrees of extension, maintained by favorable interaction with the surface after molecular combing. This observation suggests that the HA macromolecule interacts with graphite through hydrophobic patches along its surface. AFM studies of HA behavior on differing surfaces under well-controlled environmental conditions provides useful insight into the variety of conformations and interactions likely to be found under differing physiological conditions.
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Affiliation(s)
- Chiara Spagnoli
- Othmer Department of Chemical and Biological Sciences and Engineering, Polytechnic University, 6 Metrotech Center, Brooklyn, NY 11201, USA
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40
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Harding SE. Challenges for the modern analytical ultracentrifuge analysis of polysaccharides. Carbohydr Res 2005; 340:811-26. [PMID: 15780247 DOI: 10.1016/j.carres.2005.01.027] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2004] [Accepted: 01/12/2005] [Indexed: 11/29/2022]
Abstract
This article reviews some of the recent advances in analytical ultracentrifugation and how these advances have impacted--and can impact--on our understanding of the size, shape through conformation modelling, interactions and charge properties of polysaccharides in solution, particularly when used in combination with other solution techniques and also imaging techniques. Specifically we look at (1) polysaccharide polydispersity and simple shape analysis by sedimentation velocity, and in particular using new approaches such as SEDFIT analysis; (2) polysaccharide molecular-weight analysis by sedimentation equilibrium and MSTAR analysis and how this complements analysis of size exclusion chromatography coupled to multi-angle laser light scattering; (3) polysaccharide conformation analysis using traditional procedures such as the Wales-van Holde ratio, power law or 'scaling' relations, more specialised treatments for rigid cylindrical structures, semi-flexible chains and worm-like coils and complications through draining effects; (4) Analysis of polysaccharide interactions and in particular complex formation phenomena, focusing on interesting applications in the areas of mucoadhesion and sedimentation fingerprinting; and (5) the possibilities for macromolecular charge and charge screening measurement.
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Affiliation(s)
- Stephen E Harding
- NCMH Physical Biochemistry Laboratory, University of Nottingham, School of Biosciences, Sutton Bonington LE12 5RD, UK.
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41
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Morris VJ, Gunning AP, Faulds CB, Williamson G, Svensson B. AFM Images of Complexes between Amylose andAspergillus niger Glucoamylase Mutants, Native and Mutant Starch Binding Domains: A Model for the Action of Glucoamylase. STARCH-STARKE 2005. [DOI: 10.1002/star.200400333] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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42
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Cowman MK, Spagnoli C, Kudasheva D, Li M, Dyal A, Kanai S, Balazs EA. Extended, relaxed, and condensed conformations of hyaluronan observed by atomic force microscopy. Biophys J 2004; 88:590-602. [PMID: 15489305 PMCID: PMC1305036 DOI: 10.1529/biophysj.104.049361] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
The conformation of the polysaccharide hyaluronan (HA) has been investigated by tapping mode atomic force microscopy in air. HA deposited on a prehydrated mica surface favored an extended conformation, attributed to molecular combing and inhibition of subsequent chain recoil by adhesion to the structured water layer covering the surface. HA deposited on freshly cleaved mica served as a defect in a partially structured water layer, and favored relaxed, weakly helical, coiled conformations. Intramolecularly condensed forms of HA were also observed, ranging from pearl necklace forms to thick rods. The condensation is attributed to weak adhesion to the mica surface, counterion-mediated attractive electrostatic interactions between polyelectrolytes, and hydration effects. Intermolecular association of both extended and condensed forms of HA was observed to result in the formation of networks and twisted fibers, in which the chain direction is not necessarily parallel to the fiber direction. Whereas the relaxed coil and partially condensed conformations of HA are relevant to the native structure of liquid connective tissues, fully condensed rods may be more relevant for HA tethered to a cell surface or intracellular HA, and fibrous forms may be relevant for HA subjected to shear flow in tight intercellular spaces or in protein-HA complexes.
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Affiliation(s)
- Mary K Cowman
- Othmer Department of Chemical and Biological Sciences and Engineering, Polytechnic University, Brooklyn, New York 11201, USA.
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43
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Bae AH, Lee SW, Ikeda M, Sano M, Shinkai S, Sakurai K. Rod-like architecture and helicity of the poly(C)/schizophyllan complex observed by AFM and SEM. Carbohydr Res 2004; 339:251-8. [PMID: 14698883 DOI: 10.1016/j.carres.2003.09.032] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Abstract
Microscopic studies of the complex between poly(C) and schizophyllan (SPG), employing both AFM and SEM, revealed that the complex takes the same rod-like architecture on the mica surface as those of the renatured SPG and the original triple helix of SPG, indicating that the complex also has a helical structure. The SEM observations showed the helical pattern on the rod surface, only when the sample was metal shadowed. The pitch evaluated from the image is comparable with that obtained from crystallographic data. The ability to visualize the helical structure can be explained from the hypothesis that the platinum grains may assemble on the sample using the molecular surface of the SPG (or complex) as the template.
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Affiliation(s)
- Ah-Hyun Bae
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 812-8581, Fukuoka, Japan
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44
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Rondeau-Mouro C, Zykwinska A, Durand S, Doublier JL, Buléon A. NMR investigations of the 4-ethyl guaicol self-diffusion in iota (ι)-carrageenan gels. Carbohydr Polym 2004. [DOI: 10.1016/j.carbpol.2004.06.011] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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45
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Adams EL, Kroon PA, Williamson G, Morris VJ. Characterisation of heterogeneous arabinoxylans by direct imaging of individual molecules by atomic force microscopy. Carbohydr Res 2003; 338:771-80. [PMID: 12668097 DOI: 10.1016/s0008-6215(03)00017-x] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Atomic force microscopy has been used to characterise populations of extracted water-soluble wheat endosperm arabinoxylans. The adsorbed molecules are extended structures with an estimated Kuhn statistical segment length of 128 nm, suggesting that they adopt an ordered helical structure. However, estimates of the molecular weight distribution, coupled with size exclusion data, suggest that, in solution, the polysaccharides behave as semi-flexible coils, with a Kuhn length of 16 nm. These data imply that adsorption of the arabinoxylan structures onto mica promotes formation of the helical structure. Adoption of this ordered structure is fortunate because it has permitted characterisation of branching observed in a small proportion (approximately 15%) of the population of otherwise linear molecules. The degree of branching has been found to increase with the contour length of the molecules. Degradation of the polysaccharides with xylanase has been used to confirm that both the backbone and branches are based on beta-(1-->4) linked D-xylopyranosyl residues.
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Affiliation(s)
- Elizabeth L Adams
- Norwich Laboratory, Institute of Food Research, Norwich Research Park, Colney, Norwich NR4 7UA, UK
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46
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Gunning A, Giardina TP, Faulds CB, Juge N, Ring SG, Williamson G, Morris VJ. Surfactant-mediated solubilisation of amylose and visualisation by atomic force microscopy. Carbohydr Polym 2003. [DOI: 10.1016/s0144-8617(02)00126-1] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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48
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Janaswamy S, Chandrasekaran R. Effect of calcium ions on the organization of iota-carrageenan helices: an X-ray investigation. Carbohydr Res 2002; 337:523-35. [PMID: 11890890 DOI: 10.1016/s0008-6215(02)00017-4] [Citation(s) in RCA: 64] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
X-ray fiber diffraction analysis confirms that calcium iota-carrageenan forms a threefold, right-handed, half-staggered, parallel, double helix of pitch 26.42 A stabilized by interchain hydrogen bonds. According to the detailed structural results, three helices are packed in a trigonal unit cell (a=23.61 and c=13.21 A). Strong interactions between the sulfate groups of neighboring helices, mediated by calcium ions and water molecules, are responsible for stabilizing the three-dimensional structure.
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Affiliation(s)
- Srinivas Janaswamy
- Whistler Center for Carbohydrate Research, Food Science Building, Purdue University, West Lafayette, IN 47907-1160, USA
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49
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Giardina T, Gunning AP, Juge N, Faulds CB, Furniss CS, Svensson B, Morris VJ, Williamson G. Both binding sites of the starch-binding domain of Aspergillus niger glucoamylase are essential for inducing a conformational change in amylose. J Mol Biol 2001; 313:1149-59. [PMID: 11700070 DOI: 10.1006/jmbi.2001.5097] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
The interaction of the two binding sites of the starch-binding domain (SBD) of Aspergillus niger glucoamylase 1 (GA-I) with substrate has been investigated by using atomic force microscopy (AFM) and UV difference spectroscopy in combination with site-specific mutants of both SBD and GA-I. The SBD possesses two binding sites with distinct affinities towards the soluble linear substrate maltoheptaose; dissociation constants (K(d)) of 17 and 0.95 microM were obtained for W563 K (binding site 2 mutant) and W590 K (binding site 1 mutant), respectively, compared to an apparent K(d) of 23 microM for the wild-type SBD. Further, the two sites are almost but not totally independent of each other for binding, since abolishing one site does not prevent the amylose chain binding to the other site. Using AFM, we show that the amylose chains undergo a conformational change to form loops upon binding to the SBD, using either the recombinant wild-type SBD or a catalytically inactive mutant of GA-I. This characteristic conformation of amylose is lost when one of the SBD binding sites is eliminated by site-directed mutagenesis, as seen with the mutants W563 K or W590 K. Therefore, although each binding site is capable of simple binding to a ligand, both sites must be functional in order to induce a gross conformational change of the amylose molecules. Taken together these data suggest that for the complex with soluble amylose, SBD binds to a single amylose chain, site 1 being responsible for the initial recognition of the chain and site 2 being involved in tighter binding, leading to the circularisation of the amylose chain observed by AFM. Binding of the SBD to the amylose chain results in a novel two-turn helical amylose complex structure. The binding of parallel amylosic chains to the SBD may provide a basis for understanding the role of the SBD in facilitating enzymatic degradation of crystalline starches by glucoamylase 1.
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Affiliation(s)
- T Giardina
- Nutrition, Health and Consumer Science Division, Institute of Food Research, Colney, Norwich, UK
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50
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Abstract
The three-dimensional structure of the sodium salt of iota-carrageenan has been determined by using X-ray diffraction data collected from its polycrystalline and oriented fibers. The molecule forms a half-staggered, parallel, threefold, right-handed double helix that is stabilized by interchain hydrogen bonds from 2- and 6-hydroxyl groups in the galactosyl units. Three helices are organized in a trigonal unit cell, of dimensions a=24.02 and c=12.93 A, with a lateral separation of 13.9 A for each pair. Both 2- and 4-sulfate groups are essential in helix-helix interactions that are mediated only by sodium ions and water molecules.
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Affiliation(s)
- S Janaswamy
- Whistler Center for Carbohydrate Research, Food Science Building, Purdue University, West Lafayette, IN 47907-1160, USA
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