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Correa-Luna M, Gargiulo J, Beale P, Deane D, Leonard J, Hack J, Geldof Z, Wilson C, Garcia S. Accounting for minimum data required to train a machine learning model to accurately monitor Australian dairy pastures using remote sensing. Sci Rep 2024; 14:16927. [PMID: 39043833 PMCID: PMC11266514 DOI: 10.1038/s41598-024-68094-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 07/19/2024] [Indexed: 07/25/2024] Open
Abstract
Precision in grazing management is highly dependent on accurate pasture monitoring. Typically, this is often overlooked because existing approaches are labour-intensive, need calibration, and are commonly perceived as inaccurate. Machine-learning processes harnessing big data, including remote sensing, can offer a new era of decision-support tools (DST) for pasture monitoring. Its application on-farm remains poor because of a lack of evidence about its accuracy. This study aimed at evaluating and quantifying the minimum data required to train a machine-learning satellite-based DST focusing on accurate pasture biomass prediction using this approach. Management data from 14 farms in New South Wales, Australia and measured pasture biomass throughout 12 consecutive months using a calibrated rising plate meter (RPM) as well as pasture biomass estimated using a DST based on high temporal/spatial resolution satellite images were available. Data were balanced according to farm and week of each month and randomly allocated for model evaluation (20%) and for progressive training (80%) as follows: 25% training subset (1W: week 1 in each month); 50% (2W: week 1 and 3); 75% (3W: week 1, 3, and 4); and 100% (4W: week 1 to 4). Pasture biomass estimates using the DST across all training datasets were evaluated against a calibrated rising plate meter (RPM) using mean-absolute error (MAE, kg DM/ha) among other statistics. Tukey's HSD test was used to determine the differences between MAE across all training datasets. Relative to the control (no training, MAE: 498 kg DM ha-1) 1W did not improve the prediction accuracy of the DST (P > 0.05). With the 2W training dataset, the MAE decreased to 342 kg DM ha-1 (P < 0.001), while for the other training datasets, MAE decreased marginally (P > 0.05). This study accounts for minimal training data for a machine-learning DST to monitor pastures from satellites with comparable accuracy to a calibrated RPM which is considered the 'gold standard' for pasture biomass monitoring.
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Affiliation(s)
- Martin Correa-Luna
- Dairy Science Group, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Camden, NSW, 2567, Australia.
| | - Juan Gargiulo
- NSW Department of Primary Industries, Menangle, NSW, 2568, Australia
| | - Peter Beale
- Local Land Services, Hunter, Taree, NSW, 2430, Australia
| | - David Deane
- Local Land Services, Hunter, Taree, NSW, 2430, Australia
| | - Jacob Leonard
- Local Land Services, Hunter, Taree, NSW, 2430, Australia
| | - Josh Hack
- Ag Farming Systems, Hunter, Taree, NSW, 2430, Australia
| | - Zac Geldof
- Agricultural Consulting, Northern Rivers, NSW, 2480, Australia
| | - Chloe Wilson
- Dairy Science Group, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Camden, NSW, 2567, Australia
| | - Sergio Garcia
- Dairy Science Group, School of Life and Environmental Sciences, Faculty of Science, The University of Sydney, Camden, NSW, 2567, Australia
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Petrov AF, Bogdanova OV, Narozhnykh KN, Kamaldinov EV, Shatokhin KS, Gart VV, Kulikova SG, Zhigulin TA. Clustering of countries based on dairy productivity characteristics of Holstein cattle for breeding material selection. Vet World 2024; 17:1108-1118. [PMID: 38911070 PMCID: PMC11188896 DOI: 10.14202/vetworld.2024.1108-1118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2024] [Accepted: 04/23/2024] [Indexed: 06/25/2024] Open
Abstract
Background and Aim The aim of any breeding process is to create a herd based on certain parameters that reflect an ideal animal vision. Targeted herding involves selecting the source of breeding material to be imported from another country. Therefore, there is a problem in selecting a breeding material importer to rapidly form a uterine canopy with the required properties. The purpose of this study was to evaluate a set of predictive milk productivity traits in Holstein cattle across countries. Materials and Methods This research was based on records of 819,358 recorded animals from 28 countries born after January 1, 2018, from open databases. We used the Euclidean metric to construct dendrograms characterizing the similarity of countries according to the complex milk productivity traits of the daughters of bulls. The Ward method was used to minimize intracluster variance when forming clusters and constructing the corresponding diagrams. Principal component analysis was used to reduce dimensionality and eliminate the effect of multicollinearity. The principal components were selected using the Kaiser-Harris criteria. Results A ranking of multidimensional complex milk productivity traits in different countries over the past 5 years was performed. A group of leading countries led by the USA was established according to the studied indicators, and the possible reasons for such a division into groups were described. Conclusion The pressure of purposeful artificial selection prevails in comparison with the pressure of natural selection concerning milk productivity traits in a certain group of countries, which allows specialists to choose suppliers when buying breeding animals and materials. The findings are based solely on data from recorded animals, which may not represent the entire breed population within each country, especially in regions where record-keeping may be inconsistent. It is expected that further studies will include regional data from large enterprises not part of Interbull, with mandatory verification and validation. An important element of such work is seen as the ability to compare the milk productivity of populations from different countries using a different scale, as well as studying the differentiation of countries by other selection traits of dairy.
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Affiliation(s)
- A. F. Petrov
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - O. V. Bogdanova
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - K. N. Narozhnykh
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - E. V. Kamaldinov
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - K. S. Shatokhin
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - V. V. Gart
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - S. G. Kulikova
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
| | - T. A. Zhigulin
- Department of Veterinary Genetics and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, 630039, Russia
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Morales AG, Cockrum RR, Teixeira IAMA, Ferreira G, Hanigan MD. Graduate Student Literature Review: System, plant, and animal factors controlling dietary pasture inclusion and their impact on ration formulation for dairy cows. J Dairy Sci 2024; 107:870-882. [PMID: 37769943 DOI: 10.3168/jds.2023-23810] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2023] [Accepted: 09/01/2023] [Indexed: 10/03/2023]
Abstract
Diet formulation in a pasture-based dairy system is a challenge as the quality and quantity of available pasture, which generally constitutes the base diet, is constantly changing. The objective of this paper is to cover a more in-depth review of the nutritional characteristics of pasture-based diets, identifying potential system, plant, and animal factors that condition pasture dietary inclusion in dairy cows. In practice, there is a wide diversity of pasture-based systems with predominant to minimal use of pasture requiring a more specific classification that potentially considers the amount and time of access to pasture, access to housing, length of grazing season, seasonality of calving, and level and method of supplementation. There are important differences in the nutritional quality between pasture species and even cultivars. However, under management practices that promote maintenance of pasture in a vegetative state as well as controlling the availability of pasture, it is possible to achieve high dry matter intakes (∼2.9%-3.4% of live weight) of pasture with moderate to high diet energy density, protein supply, and digestibility. The amount of pasture to include in the diet will depend on several factors, such as the type of production system, the cost of supplementary feeds, and the farmer's objectives, but inclusions of ∼40% to 50% of the diet seem to potentially reduce costs while apparently not limiting voluntary feed intake. Considering that there seems to be a continuum of intermediate management systems, a better understanding of the factors inherent to the feed ingredients used, as well as the use of nutrients by cows, and potential interactions between animal × system should be addressed in greater depth. This requires a meta-analysis approach, but given the diversity of the pasture-based system in practice, the existing information is highly fragmented. A clear definition of "subsystems" is necessary to direct the future research and development of mechanistic models.
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Affiliation(s)
- A G Morales
- Department of Dairy Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061; Instituto de Ciencia Animal, Universidad Austral de Chile, Valdivia 5110566, Chile.
| | - R R Cockrum
- Department of Dairy Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - I A M A Teixeira
- Department of Animal, Veterinary, and Food Sciences, University of Idaho, Twin Falls, ID 83301
| | - G Ferreira
- Department of Dairy Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - M D Hanigan
- Department of Dairy Science, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
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Bouquet A, Slagboom M, Thomasen JR, Friggens NC, Kargo M, Puillet L. Combined mechanistic and genetic modelling to benchmark body reserve traits as proxies of dairy cows' lifetime efficiency in grass-based production systems. Animal 2024; 18:101035. [PMID: 38086280 DOI: 10.1016/j.animal.2023.101035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 11/09/2023] [Accepted: 11/10/2023] [Indexed: 01/17/2024] Open
Abstract
Improving lifetime lactation efficiency of dairy cows by selection is difficult due to the complexity of this trait and the existence of genotype-by-environment interactions. This study aimed at assessing the relevance of traits derived from body reserves as lifetime efficiency indicators under contrasting nutritional environments. Given the absence of large-scale datasets covering a panel of feeding regimes, phenotypes were simulated for populations of 20 000 dairy cows using a mechanistic bioenergetic model. Ten phenotypes were computed for third-lactation cows. Analysed phenotypes comprised total milk production, lactation efficiency, BW at calving (BWcalv), DM intake (DMI) and interval between first insemination and conception. Five traits described levels and changes of body reserves at different periods during lactation. Lifetime lactation efficiency was computed for all cows (Life_Eff). Three nutritional environments were defined considering a grass-based production system with seasonal calving: a high non-limiting scenario (HS) mimicking ad libitum access to feed and two limiting environments with moderate (MS) and low (LS) feed offer. Variance components were estimated for all traits within and between environments using REML. Heritabilities estimated for milk production, lactation efficiency, BWcalv and DMI were moderate in the different environments (0.27-0.35 ± 0.04). The heritability of body reserve levels and dynamics were moderate in the HS and MS scenarios (0.23-0.30 ± 0.03) and lower in the LS scenario (0.14-0.25 ± 0.03). The heritability of Life_Eff was low in the HS environment (0.07 ± 0.01) and slightly increased in the limiting environments. All genetic correlations estimated between environments were moderate to high (≥0.66 ± 0.07), suggesting low to moderate genotype-by-environment interactions. Estimated genetic correlations were moderate between Life_Eff and body reserve levels (from 0.39 to 0.51 ± 0.08) and moderate but negative between Life_Eff and change in body reserves traits (-0.27 to -0.37 ± 0.09) in the HS environment. The genetic correlations between Life_Eff and body reserve levels increased to higher values in the limiting environments. In contrast, genetic correlations between Life_Eff and the changes in body reserves were closer to zero. In conclusion, this study showed that body reserve levels were relevant proxies of lifetime irrespective of the environment. In contrast, changes in body reserves that reflected energy mobilisation in early lactation were less informative about lifetime efficiency in environments with severe feed restrictions.
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Affiliation(s)
- A Bouquet
- QGG Center, C.F. Møllers Allé 3, 8000 Aarhus C, Denmark.
| | - M Slagboom
- QGG Center, C.F. Møllers Allé 3, 8000 Aarhus C, Denmark
| | - J R Thomasen
- VikingGenetics, Ebeltoftvej 16, 8960 Randers SØ, Denmark
| | - N C Friggens
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
| | - M Kargo
- QGG Center, C.F. Møllers Allé 3, 8000 Aarhus C, Denmark
| | - L Puillet
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
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5
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Loch M, Niine T, Dorbek-Kolin E, Peetsalu K, Orro T. Associations of neonatal acute phase response with first lactation performance in dairy cows. J Dairy Sci 2023; 106:6353-6364. [PMID: 37479579 DOI: 10.3168/jds.2022-22669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 03/17/2023] [Indexed: 07/23/2023]
Abstract
During the first 3 wk of life, the immune system of newborn ruminants starts to work, as indicated by fluctuations in the concentrations of proinflammatory cytokines and acute phase proteins (APP). They have been shown to be markers for short and long-term weight gain in ruminants. This observational study investigated these proteins as possible indicators of first lactation performance of dairy cows. A total of 117 dairy calves from a single farm were enrolled in the study. Serum and fecal samples were taken once a week for the first 3 wk of life. Cryptosporidium spp. infection and its treatment were monitored and accounted for in statistical analysis. The concentrations of the APP serum amyloid A (SAA) and haptoglobin (Hp), and the proinflammatory cytokines interleukin-6 (IL-6) and tumor necrosis factor α (TNF-α) were analyzed in serum. After the first lactation, health and performance data of the cows were retrieved, and associations between APP and cytokine concentrations with first lactation outcomes were investigated through linear and logistic regression. This study found a negative association between the concentration of Hp in the second week of life and average daily weight gain at one year. The SAA concentration measured during the second and third weeks of life was positively associated with age at first calving. IL-6, SAA, and Hp measured in the second week of life were positively associated with calving to conception interval. The concentrations of IL-6 and TNF-α during the first week of life were associated with higher odds of reproductive issues during the first lactation period. These markers can be used to help understand underlying processes that influence animal health and production. In conclusion, inflammatory responses during the first week of life are related to reproductive success, whereas the second and third weeks of life seem to influence the future productive performance in dairy cows.
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Affiliation(s)
- Marina Loch
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, Tartu, 51014, Estonia.
| | - Tarmo Niine
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, Tartu, 51014, Estonia
| | - Elisabeth Dorbek-Kolin
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, Tartu, 51014, Estonia
| | - Kristel Peetsalu
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, Tartu, 51014, Estonia
| | - Toomas Orro
- Institute of Veterinary Medicine and Animal Sciences, Estonian University of Life Sciences, Kreutzwaldi 62, Tartu, 51014, Estonia
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Butler ST, Crowe AD, Moore SG, Lonergan P. Review: Use of assisted reproduction in seasonal-calving dairy herds. Animal 2023; 17 Suppl 1:100775. [PMID: 37567682 DOI: 10.1016/j.animal.2023.100775] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 03/03/2023] [Accepted: 03/07/2023] [Indexed: 08/13/2023] Open
Abstract
A unique aspect of seasonal-calving pasture-based systems of dairy production is the intense focus placed on achieving a concentrated herd-calving period in late winter and early spring. Hence, excellent reproductive performance is required during a short breeding period. A concentrated calving period also produces a problem in the form of a large number of male dairy calves being born at the same time; as these calves have little economic value due to poor beef merit, they present a potential welfare concern. A solution exists in the form of sex-sorted semen, but this is typically associated with poorer pregnancy per artificial insemination, and hence, the use of sex-sorted semen must be carefully considered. The logical strategy to use sex-sorted semen is to target the best genetic merit dams in the herd to generate replacement heifers, thereby accelerating herd genetic gain. On the other hand, if all dairy farmers adopt such a strategy, there will be a corresponding reduction in elite genetic merit male dairy calves being born, potentially reducing availability of the next generation of future bulls to be used for artificial insemination. Use of in vitro embryo production on elite dairy donors could avoid this problem by acting as a multiplier, potentially in tandem with Y-sorted semen to skew the offspring sex ratio towards more male calves. Use of sex-sorted semen on the best genetic merit dams can also facilitate a marked increase in the usage of beef semen on any dams that are deemed unsuitable for sex-sorted semen. The use of "beef on dairy" requires selection of beef bulls that generate offspring with traits that meet the key requirements of both the dairy farmer (e.g., gestation length and calving ease) and the beef farmer that must be motivated to purchase the calves (e.g., growth rate, age at slaughter, carcass value). Beef breed dams that have elite genetic merit for these traits could also be considered for in vitro embryo production, potentially in tandem with Y-sorted semen, to facilitate genetic gain for the growing "beef-on-dairy" market. It is possible to transfer a beef embryo (75-100% beef breed genetics) into dairy dams that are not required to generate replacements, but this is likely to remain a niche practice as there are many barriers to widespread adoption. Such combinations of assisted reproduction have the potential to improve the efficiency and sustainability metrics of seasonal-calving pasture-based dairy herds.
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Affiliation(s)
- Stephen T Butler
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland.
| | - Alan D Crowe
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland; School of Agriculture and Food Science, University College Dublin, Ireland
| | - Stephen G Moore
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland
| | - Pat Lonergan
- School of Agriculture and Food Science, University College Dublin, Ireland
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7
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Cahill L, Patton D, Reilly B, Pierce KM, Horan B. Grazing season length and stocking rate affect milk production and supplementary feed requirements of spring-calving dairy cows on marginal soils. J Dairy Sci 2023; 106:1051-1064. [PMID: 36494227 DOI: 10.3168/jds.2021-21244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Accepted: 09/03/2022] [Indexed: 12/12/2022]
Abstract
The objective of this study was to investigate the effect of increasing stocking rate (SR) and extending grazing season (GS) length on pasture and animal productivity on a marginal, poorly draining soil type. The study was a multiyear (2017 to 2020, inclusive) whole farm systems evaluation with a 2 × 2 factorial experimental arrangement of treatments. The systems evaluated comprised 2 GS lengths, average (AGS; 205 d) and extended (EGS; 270 d), and the 2 whole farm stocking rates were medium (2.5 cows/ha) and high (2.9 cows/ha). We used this study design to create 4 grazing system intensities (500, 600, 700, and 800 cow grazing days per hectare per year). In 2017, cows were randomly allocated to 1 of the 4 whole farm systems precalving and remained on the same treatments for the duration of the study. We found no significant differences in total average annual pasture production [14,133 ± 538 kg of dry matter (DM) per hectare] or sward chemical composition between GS and SR treatments over the 4-yr period, with the exception of average crude protein content, which was lower for EGS (211 g/kg DM) compared with AGS (218 g/kg DM). Grazed pasture production was significantly increased in EGS treatments (+758 kg of DM/ha) compared with AGS (9,917 kg of DM/ha), whereas conserved silage DM production was greater for AGS (+716 kg of DM/ha) compared with EGS (3,583 kg of DM/ha). Neither GS nor SR had a significant effect on daily or cumulative lactation milk and fat plus protein production per cow (5,039 and ±440 kg, respectively). Increasing SR resulted in increased milk fat plus protein yield per hectare based on increased grazed pasture utilization. These results add further credence to the important additive contributions of both extended grazing and SR intensification to achieve high levels of grazed pasture utilization and milk production per hectare while reducing supplementary feed requirements within spring-calving grazing systems.
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Affiliation(s)
- L Cahill
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 P302, Ireland; School of Agriculture, Food Science & Veterinary Medicine, UCD, Belfield, Dublin 4, Ireland
| | - D Patton
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 P302, Ireland
| | - B Reilly
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 P302, Ireland
| | - K M Pierce
- School of Agriculture, Food Science & Veterinary Medicine, UCD, Belfield, Dublin 4, Ireland
| | - B Horan
- Animal and Grassland Research and Innovation Centre, Teagasc Moorepark, Fermoy, Co. Cork, P61 P302, Ireland.
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The Sustainability and Development Strategy of a Cattle Feed Bank: A Case Study. SUSTAINABILITY 2022. [DOI: 10.3390/su14137989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
One of the Indonesian government’s policies to achieve national beef self-sufficiency is the 1000 beef village program. The program was piloted in many cattle-farming centers involving the operation of a feed bank to supply animal feed to tackle the challenge of feed limitation during the dry season. This study evaluates the sustainability status of an ongoing feed bank program and its development strategy based on the current progress of a feed bank used to serve five groups of farmers. Ninety sustainability attributes were derived based on six dimensions. The attributes were compiled from the primary data collected using a questionnaire. Expert opinions from practitioners were also considered in evaluating the attributes. The feed bank’s sustainability status and development strategy were determined using the multi-dimensional scaling method with the rapid appraisal approach. It was found that the overall sustainability status of the feed bank was less sustainable, with an overall score of 49.55. The individual dimensions of (A) policy and government support, (B) raw material, (C) facilities and infrastructure, (D) feed bank management, (D) human resource management, (E) price, production, and (F) distribution systems posed sustainability scores of 48.48, 60.33, 48.57, 47.89, 48.76, and 44.64, respectively. Among the 90 predefined attributes, 21 were identified as highly sensitive through both the root mean square and expert opinion. Those attributes led to five main recommended development strategies: (1) strengthening the institution, (2) intensifying training, (3) increasing human resources (4) partnership developments, and (5) increasing the role of multi-stakeholders.
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Mulkerrins M, Beecher M, McAloon CG, Macken-Walsh Á. Implementation of compact calving at the farm level: A qualitative analysis of farmers operating pasture-based dairy systems in Ireland. J Dairy Sci 2022; 105:5822-5835. [PMID: 35525610 DOI: 10.3168/jds.2021-21320] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2021] [Accepted: 03/06/2022] [Indexed: 11/19/2022]
Abstract
Pasture-based dairy systems aim to maximize the proportion of grazed pasture in the cow's diet by having a compact calving season that coincides with the onset of the grass growing season. In Ireland, where pasture-based systems are dominant, a key performance indicator that reflects the degree of compact calving is referred to as 6-wk calving rate (6-wk CR). Although the industry target is 90%, the national average 6-wk CR in Ireland is currently 67%. The aim of this study was to use qualitative research to understand in depth farmers' experiences in implementing a high 6-wk CR. Ten case-study dairy farmers were interviewed using the biographical narrative interpretive method. We identified 5 broad and often interrelated themes evoked by farmers regarding 6-wk CR: the "good" farmer; support networks; free time and family time; simplicity of a structured system; and profitability and monetary gain. The findings of this study identify complexities and challenges at farm level when it comes to increasing 6-wk CR, such as increased workload and challenges associated with large numbers of male calves born during a condensed calving season. Benefits experienced by farmers as a result of increasing 6-wk CR included increased days in milk and consequently improved cash flow as well as increased grass utilization. Our findings are of interest to researchers and extension agents involved in programs concerned with reproductive management in pasture-based dairy systems.
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Affiliation(s)
- M Mulkerrins
- Mountbellew Agricultural College, College Road, Treanrevagh, Mountbellew, Co. Galway, Ireland H53 WE00.
| | - M Beecher
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, Ireland P61C996
| | - C G McAloon
- School of Veterinary Medicine, University College Dublin, Belfield, Co. Dublin, Ireland D04V1W8
| | - Á Macken-Walsh
- Department of Agri-Food Business and Spatial Analysis, Rural Economy Development Programme, Teagasc, Mellows Campus, Athenry, Co. Galway, Ireland H65R718
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10
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Evers S, McParland S, Delaby L, Pierce K, Horan B. Analysis of milk solids production and mid-lactation bodyweight to evaluate cow production efficiency on commercial dairy farms. Livest Sci 2021. [DOI: 10.1016/j.livsci.2021.104691] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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11
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Crowe AD, Lonergan P, Butler ST. Invited review: Use of assisted reproduction techniques to accelerate genetic gain and increase value of beef production in dairy herds. J Dairy Sci 2021; 104:12189-12206. [PMID: 34538485 DOI: 10.3168/jds.2021-20281] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2021] [Accepted: 08/02/2021] [Indexed: 11/19/2022]
Abstract
The contribution of the calf enterprise to the profit of the dairy farm is generally considered small, with beef bull selection on dairy farms often not considered a high priority. However, this is likely to change in the future as the rapid rate of expansion of the dairy herd in some countries is set to plateau and improvements in dairy herd fertility combine to reduce the proportion of dairy breed calves required on dairy farms. This presents the opportunity to increase the proportion of beef breed calves born, increasing both the value of calf sales and the marketability of the calves. Beef embryos could become a new breeding tool for dairies as producers need to reassess their breeding policy as a consequence of welfare concerns and poor calf prices. Assisted reproductive technologies can contribute to accelerated genetic gain by allowing an increased number of offspring to be produced from genetically elite dams. There are the following 3 general classes of donor females of interest to an integrated dairy-beef system: (1) elite dairy dams, from which oocytes are recovered from live females using ovum pick-up and fertilized in vitro with semen from elite dairy bulls; (2) elite beef dams, where the oocytes are recovered from live females using ovum pick-up and fertilized with semen from elite beef bulls; and (3) commercial beef dams (≥50% beef genetics), where ovaries are collected from the abattoir postslaughter, and oocytes are fertilized with semen from elite beef bulls that are suitable for use on dairy cows (resulting embryo with ≥75% beef genetics). The expected benefits of these collective developments include accelerated genetic gain for milk and beef production in addition to transformation of the dairy herd calf crop to a combination of good genetic merit dairy female calves and premium-quality beef calves. The aim of this review is to describe how these technologies can be harnessed to intensively select for genetic improvement in both dairy breed and beef breed bulls suitable for use in the dairy herd.
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Affiliation(s)
- Alan D Crowe
- School of Agriculture and Food Science, University College Dublin, D04 N2E5 Ireland; Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996 Ireland
| | - Pat Lonergan
- School of Agriculture and Food Science, University College Dublin, D04 N2E5 Ireland.
| | - Stephen T Butler
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996 Ireland.
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Adaptation of Livestock to New Diets Using Feed Components without Competition with Human Edible Protein Sources-A Review of the Possibilities and Recommendations. Animals (Basel) 2021; 11:ani11082293. [PMID: 34438751 PMCID: PMC8388495 DOI: 10.3390/ani11082293] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Revised: 07/12/2021] [Accepted: 07/14/2021] [Indexed: 01/30/2023] Open
Abstract
Simple Summary Livestock feed contains components that can also be consumed by humans, which may become less available for livestock. Proteins are such components that may become less available for livestock feed. This review focuses on using alternative protein sources in feed. We may expect protein efficiency problems and we discuss how these could be solved using a combination of alternative protein sources and animal breeding. We make recommendations for the use and optimization of novel protein sources. Abstract Livestock feed encompasses both human edible and human inedible components. Human edible feed components may become less available for livestock. Especially for proteins, this calls for action. This review focuses on using alternative protein sources in feed and protein efficiency, the expected problems, and how these problems could be solved. Breeding for higher protein efficiency leading to less use of the protein sources may be one strategy. Replacing (part of) the human edible feed components with human inedible components may be another strategy, which could be combined with breeding for livestock that can efficiently digest novel protein feed sources. The potential use of novel protein sources is discussed. We discuss the present knowledge on novel protein sources, including the consequences for animal performance and production costs, and make recommendations for the use and optimization of novel protein sources (1) to improve our knowledge on the inclusion of human inedible protein into the diet of livestock, (2) because cooperation between animal breeders and nutritionists is needed to share knowledge and combine expertise, and (3) to investigate the effect of animal-specific digestibility of protein sources for selective breeding for each protein source and for precision feeding. Nutrigenetics and nutrigenomics will be important tools.
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Lahart B, Shalloo L, Herron J, O'Brien D, Fitzgerald R, Boland TM, Buckley F. Greenhouse gas emissions and nitrogen efficiency of dairy cows of divergent economic breeding index under seasonal pasture-based management. J Dairy Sci 2021; 104:8039-8049. [PMID: 33934859 DOI: 10.3168/jds.2020-19618] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Accepted: 02/23/2021] [Indexed: 12/14/2022]
Abstract
Greenhouse gas (GHG) emissions and nitrogen (N) efficiencies were modeled for 2 genetic groups (GG) of Holstein-Friesian cows across 3 contrasting feeding treatments (FT). The 2 GG were (1) high economic breeding index (EBI) animals representative of the top 5% of cows nationally (elite) and (2) EBI representative of the national average (NA). The FT represented (1) generous feeding of pasture, (2) a slight restriction in pasture allowance, and (3) a high-concentrate feeding system with adequate pasture allowance. Greenhouse gas and N balance models were parameterized using outputs generated from the Moorepark Dairy Systems model, a stochastic budgetary simulation model, having integrated biological data pertaining to the 6 scenarios (2 GG × 3 FT) obtained from a 4-yr experiment conducted between 2013 and 2016. On a per hectare basis, total system GHG emissions were similar for both elite and NA across the 3 FT. Per unit of product, however, the elite group had 10% and 11% lower GHG emissions per kilogram of fat- and protein-corrected milk and per kilogram of milk solids (MSO; fat + protein kg), respectively, compared with the NA across the 3 FT. The FT incorporating high concentrate supplementation had greater absolute GHG emissions per hectare as well as GHG per kilogram of fat- and protein-corrected milk and MSO. The elite group had a slightly superior N use efficiency (N output/N input) and lower N surplus (N input - N output) compared with the NA group. The high concentrate FT had an inferior N use efficiency and a higher N surplus. The results of the current study demonstrate that breeding for increased EBI will lead to a general improvement in GHG emissions per unit of product as well as improved N efficiency. The results also illustrate that reducing concentrate supplementation will reduce GHG emissions, GHG emissions intensity, while improving N efficiency in the context of pasture-based dairy production.
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Affiliation(s)
- B Lahart
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland; School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, D04 N2E5, Ireland
| | - L Shalloo
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland
| | - J Herron
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland
| | - D O'Brien
- Crops, Environment, and Land Use Research Centre, Teagasc, Johnstown Castle, Co. Wexford, Y35 TC97, Ireland
| | - R Fitzgerald
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland
| | - T M Boland
- School of Agriculture and Food Science, University College Dublin, Belfield, Dublin 4, D04 N2E5, Ireland
| | - F Buckley
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy, Co. Cork, P61 C996, Ireland.
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Mendes L, Coppa M, Rouel J, Martin B, Dumont B, Ferlay A, Espinasse C, Blanc F. Profiles of dairy cows with different productive lifespan emerge from multiple traits assessed at first lactation: the case of a grassland-based dairy system. Livest Sci 2021. [DOI: 10.1016/j.livsci.2021.104443] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Ducháček J, Stádník L, Ptáček M, Beran J, Okrouhlá M, Gašparík M. Negative Energy Balance Influences Nutritional Quality of Milk from Czech Fleckvieh Cows due Changes in Proportion of Fatty Acids. Animals (Basel) 2020; 10:ani10040563. [PMID: 32230933 PMCID: PMC7222402 DOI: 10.3390/ani10040563] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Accepted: 03/26/2020] [Indexed: 12/23/2022] Open
Abstract
The objective of this study was to evaluate the influence of negative energy balance on fatty acids proportion in the milk of Czech Fleckvieh cows after calving. Milk quality was determined based on fatty acid group proportion. Milk quality was evaluated in relation to selected negative energy balance (NEB) traits: body condition change (DEC) and milk citric acid content (CAC) after calving. Milk samples (n = 992) were collected once per week from 248 Czech Fleckvieh cows during the first month of lactation. Fatty acid content (%) in milk samples was determined and results were grouped as saturated (SFA) (hypercholesterolemic or volatile fatty acids) or unsaturated (UFA) (monounsaturated or polyunsaturated). Our results showed that cows with a deep NEB produce milk that is healthier for human consumption. Cows with a more significant DEC or the highest level of CAC in milk had the lowest proportion of SFA and the highest proportion of UFA (p < 0.01). These cows experienced higher physiological stress after calving; however, they produced milk of higher nutritional quality. Nowadays, we can see preventive efforts to mitigate NEB periods as a result of modern breeding trends regarding vitality, robustness, or longevity.
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Affiliation(s)
- Jaromír Ducháček
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Suchdol, 165 00 Prague 6, Czech Republic; (L.S.); (M.P.); (M.O.); (M.G.)
- Correspondence: ; Tel.: +42-022-438-3070
| | - Luděk Stádník
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Suchdol, 165 00 Prague 6, Czech Republic; (L.S.); (M.P.); (M.O.); (M.G.)
| | - Martin Ptáček
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Suchdol, 165 00 Prague 6, Czech Republic; (L.S.); (M.P.); (M.O.); (M.G.)
| | - Jan Beran
- Department Animal Husbandry Science, Faculty of Agriculture, University of South Bohemia in České Budějovice, Studentská 1668, 370 05 České Budějovice, Czech Republic;
| | - Monika Okrouhlá
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Suchdol, 165 00 Prague 6, Czech Republic; (L.S.); (M.P.); (M.O.); (M.G.)
| | - Matúš Gašparík
- Department of Animal Science, Faculty of Agrobiology, Food and Natural Resources, Czech University of Life Sciences, Kamýcká 129, Suchdol, 165 00 Prague 6, Czech Republic; (L.S.); (M.P.); (M.O.); (M.G.)
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Metabolism-associated genome-wide epigenetic changes in bovine oocytes during early lactation. Sci Rep 2020; 10:2345. [PMID: 32047242 PMCID: PMC7012839 DOI: 10.1038/s41598-020-59410-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2019] [Accepted: 01/24/2020] [Indexed: 01/20/2023] Open
Abstract
Dietary intake in early lactating cows is outmatched by milk production. These cows experience a negative energy balance, resulting in a distinct blood metabolism and poor reproductive function due to impaired ovulation and increased embryo loss. We hypothesize that oocytes from lactating cows undergoing transient metabolic stress exhibit a different epigenetic profile crucial for developmental competence. To investigate this, we collected oocytes from metabolically-profiled cows at early- and mid-postpartum stages and characterized their epigenetic landscape compared with control heifers using whole-genome bisulfite sequencing. Early-postpartum cows were metabolically deficient with a significantly lower energy balance and significantly higher concentrations of non-esterified fatty acids and beta-hydroxybutyrate than mid-postpartum animals and control heifers. Accordingly, 32,990 early-postpartum-specific differentially methylated regions (DMRs) were found in genes involved in metabolic pathways, carbon metabolism, and fatty acid metabolism, likely descriptive of the epigenetic regulation of metabolism in early-postpartum oocytes. DMRs found overlapping CpG islands and exons of imprinted genes such as MEST and GNAS in early-postpartum oocytes suggest that early lactation metabolic stress may affect imprint acquisition, which could explain the embryo loss. This whole-genome approach introduces potential candidate genes governing the link between metabolic stress and the reproductive outcome of oocytes.
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Purfield DC, Evans RD, Carthy TR, Berry DP. Genomic Regions Associated With Gestation Length Detected Using Whole-Genome Sequence Data Differ Between Dairy and Beef Cattle. Front Genet 2019; 10:1068. [PMID: 31749838 PMCID: PMC6848454 DOI: 10.3389/fgene.2019.01068] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 10/04/2019] [Indexed: 12/17/2022] Open
Abstract
While many association studies exist that have attempted to relate genomic markers to phenotypic performance in cattle, very few have considered gestation length as a phenotype, and of those that did, none used whole genome sequence data from multiple breeds. The objective of the present study was therefore to relate imputed whole genome sequence data to estimated breeding values for gestation length using 22,566 sires (representing 2,262,706 progeny) of multiple breeds [Angus (AA), Charolais (CH), Holstein-Friesian (HF), and Limousin (LM)]. The associations were undertaken within breed using linear mixed models that accounted for genomic relatedness among sires; a separate association analysis was undertaken with all breeds analysed together but with breed included as a fixed effect in the model. Furthermore, the genome was divided into 500 kb segments and whether or not segments harboured a single nucleotide polymorphism (SNP) with a P ≤ 1 × 10-4 common to different combinations of breeds was determined. Putative quantitative trait loci (QTL) regions associated with gestation length were detected in all breeds; significant associations with gestation length were only detected in the HF population and in the across-breed analysis of all 22,566 sires. Twenty-five SNPs were significantly associated (P ≤ 5 × 10-8) with gestation length in the HF population. Of the 25 significant SNPs, 18 were located within three QTLs on Bos taurus autosome number (BTA) 18, six were in two QTL on BTA19, and one was located within a QTL on BTA7. The strongest association was rs381577268, a downstream variant of ZNF613 located within a QTL spanning from 58.06 to 58.19 Mb on BTA18; it accounted for 1.37% of the genetic variance in gestation length. Overall there were 11 HF animals within the edited dataset that were homozygous for the T allele at rs381577268 and these had a 3.3 day longer (P < 0.0001) estimated breeding value (EBV) for gestation length than the heterozygous animals and a 4.7 day longer (P < 0.0001) EBV for gestation length than the homozygous CC animals. The majority of the 500 kb windows harboring a SNP with a P ≤ 1 × 10-4 were unique to a single breed and no window was shared among all four breeds for gestation length, suggesting any QTLs identified are breed-specific associations.
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Affiliation(s)
- Deirdre C Purfield
- Animal & Grassland Research and Innovation Centre, Teagasc, Cork, Ireland
| | | | - Tara R Carthy
- Animal & Grassland Research and Innovation Centre, Teagasc, Cork, Ireland
| | - Donagh P Berry
- Animal & Grassland Research and Innovation Centre, Teagasc, Cork, Ireland
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Berry DP, Amer PR, Evans RD, Byrne T, Cromie AR, Hely F. A breeding index to rank beef bulls for use on dairy females to maximize profit. J Dairy Sci 2019; 102:10056-10072. [PMID: 31495621 DOI: 10.3168/jds.2019-16912] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2019] [Accepted: 07/15/2019] [Indexed: 12/13/2022]
Abstract
The desire to increase profit on dairy farms necessitates consideration of the revenue attainable from the sale of surplus calves for meat production. However, the generation of calves that are expected to excel in efficiency of growth and carcass merit must not be achieved to the detriment of the dairy female and her ability to calve and re-establish pregnancy early postcalving without any compromise in milk production. Given the relatively high heritability of many traits associated with calving performance and carcass merit, and the tendency for many of these traits to be moderately to strongly antagonistic, a breeding index that encompasses both calving performance and meat production could be a useful tool to fill the void in supporting decisions on bull selection. The objective of the present study was to derive a dairy-beef index (DBI) framework to rank beef bulls for use on dairy females with the aim of striking a balance between the efficiency of valuable meat growth in the calf and the subsequent performance of the dam. Traits considered for inclusion in this DBI were (1) direct calving difficulty; (2) direct gestation length; (3) calf mortality; (4) feed intake; (5) carcass merit reflected by carcass weight, conformation, and fat and the ability to achieve minimum standards for each; (6) docility; and (7) whether the calf was polled. Each trait was weighted by its respective economic weight, most of which were derived from the analyses of available phenotypic data, supplemented with some assumptions on costs and prices. The genetic merit for a range of performance metrics of 3,835 artificial insemination beef bulls from 14 breeds ranked on this proposed DBI was compared with an index comprising only direct calving difficulty and gestation length (the 2 generally most important characteristics of dairy farmers when selecting beef bulls). Within the Angus breed (i.e., the beef breed most commonly used on dairy females), the correlation between the DBI and the index of genetic merit for direct calving difficulty plus gestation length was 0.74; the mean of the within-breed correlations across all other breeds was 0.87. The ranking of breeds changed considerably when ranked based on the top 20 artificial insemination bulls excelling in the DBI versus excelling in the index of calving difficulty and gestation length. Dairy breeds ranked highest on the index of calving difficulty and gestation length, whereas the Holstein and Friesian breeds were intermediate on the DBI; the Jersey breed was one of the poorest breeds on DBI, superior only to the Charolais breed. The results clearly demonstrate that superior carcass and growth performance can be achieved with the appropriate selection of beef bulls for use on dairy females with only a very modest increase in collateral effect on cow performance (i.e., 2-3% greater dystocia expected and a 6-d-longer gestation length).
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Affiliation(s)
- D P Berry
- Teagasc, Animal and Grassland Research and Innovation Centre, Moorepark, Fermoy P61 P302, Co. Cork, Ireland.
| | - P R Amer
- AbacuBio Ltd., Dunedin 9016, New Zealand
| | - R D Evans
- Irish Cattle Breeding Federation, Highfield House, Shinagh, Bandon P72 X050, Co. Cork, Ireland
| | - T Byrne
- AbacuBio Ltd., Dunedin 9016, New Zealand
| | - A R Cromie
- Irish Cattle Breeding Federation, Highfield House, Shinagh, Bandon P72 X050, Co. Cork, Ireland
| | - F Hely
- AbacuBio Ltd., Dunedin 9016, New Zealand
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Herbivore nutrition supporting sustainable intensification and agro-ecological approaches. Animal 2018; 12:s185-s187. [PMID: 30526726 DOI: 10.1017/s1751731118002690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022] Open
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