1
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Baek S, Heo JM, Bae K, Khazi MI, Lee S, Kim K, Kim JM. Co-assembly-Directed Enhancement of the Thermochromic Reversibility and Solvatochromic Selectivity of Supramolecular Polydiacetylene. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024. [PMID: 39133524 DOI: 10.1021/acs.langmuir.4c02167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
Abstract
The construction of functional materials via the co-assembly of multimolecular systems has recently emerged as a fascinating topic. The co-assembled multicomponent could promote the evolution of supramolecular assemblies into a high-order nanoarchitecture with improved functional properties. We report the successful preparation of a dual-functional polydiacetylene (MCPDA-Tz-CA) having thermochromic and solvatochromic properties via facile co-assembly of MCDA-Tz and cyanuric acid (MCDA-Tz-CA) followed by ultraviolet-induced polymerization. Molecular packing patterns from powder X-ray diffraction and density functional theory calculations of molecular self-assembly processes confirm highly ordered co-assembled lamellar structures. MCPDA-Tz-CA showed excellent reversible thermochromism properties when the temperature was increased from 30 to 150 °C with a reversible blue-to-red color transition that could be detected by the naked eye. Also, MCPDA-Tz-CA displayed selective blue-to-red solvatochromism against dimethylformamide and dimethyl sulfoxide. Detailed investigations revealed that the enhanced thermochromic reversibility and solvatochromic selectivity could be attributed to the hydrogen-bonding interactions and the formation of a network structure in the MCDA-Tz/cyanuric acid co-assembly. Our research opens a promising route for improving the performance of functional materials via noncovalent multicomponent arrangements at the molecular level.
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Affiliation(s)
- Seungjoo Baek
- Department of Chemical Engineering, Hanyang University, Seoul 04763, Korea
| | - Jung-Moo Heo
- Department of Chemical Engineering, Hanyang University, Seoul 04763, Korea
| | - Kwangmin Bae
- Department of Chemical Engineering, Hanyang University, Seoul 04763, Korea
| | - Mohammed Iqbal Khazi
- Institute of Nano Science and Technology, Hanyang University, Seoul 04763, Korea
| | - Seongjae Lee
- Department of Chemical Engineering, Hanyang University, Seoul 04763, Korea
| | - Kyeounghak Kim
- Department of Chemical Engineering, Hanyang University, Seoul 04763, Korea
| | - Jong-Man Kim
- Department of Chemical Engineering, Hanyang University, Seoul 04763, Korea
- Institute of Nano Science and Technology, Hanyang University, Seoul 04763, Korea
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2
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Paul BK. Blue- and Red-Shifting C-H⋯O Hydrogen Bonds of Cyclic Ethers with Haloforms: Effect of Ring-Size and Consistency with Bent's Rule. Chemphyschem 2024; 25:e202400263. [PMID: 38590027 DOI: 10.1002/cphc.202400263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 04/08/2024] [Accepted: 04/08/2024] [Indexed: 04/10/2024]
Abstract
A DFT-based computational study is carried out to delve into the interplay between hyperconjugation and rehybridization effects underlying the formation of blue- or red-shifting H-bonds (HBs) in 1 : 1 complexes of cyclic ethers (HB acceptor) of varying ring-size with haloforms, CHF3 and CHCl3 (HB donor). The calculations reveal that with decreasing angular strain (increasing ring-size) of the cyclic ethers, the extent of blue-shift increases for 1 : 1 complexes with CHF3, while a reverse sequence is observed with CHCl3, eventually leading to a red-shifting HB in the oxepane : CHCl3 complex. It is noted that the trend in the shift of C-H stretching fundamental is not mirrored by the C-H bond length or interaction energies for both the systems studied, that is, the low sensitivity of the changes on the strain on the O-atom of HB acceptor (cyclic ethers) is to be emphasized.
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Affiliation(s)
- Bijan K Paul
- Department of Chemistry, Mahadevananda Mahavidyalaya, Kolkata, 700 120, India
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3
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Gusak MY, Kinzhalov MA, Frontera A, Bokach NA, Kukushkin VY. Metal-Induced Enhancement of Tetrel Bonding. The Case of C⋅⋅⋅X-Ir III (X=Cl, Br) Tetrel Bond Involving a Methyl Group. Chem Asian J 2024:e202400421. [PMID: 38788128 DOI: 10.1002/asia.202400421] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 05/16/2024] [Accepted: 05/24/2024] [Indexed: 05/26/2024]
Abstract
In X-ray structures of the isomorphic mer-[IrX3(THT)(CNXyl)2] (X=Cl 1, Br 2; THT=tetrahydrothiophene; Xyl=2,6-Me2C6H3-) complexes, we revealed short intermolecular contacts between the C-atom of an isocyanide methyl group and halide ligands of another molecule. Geometrical consideration of the X-ray data and analysis of appropriate DFT studies allowed the attribution of these contacts to CMe⋅⋅⋅X-IrIII (X=Cl, Br) tetrel bond. Specifically, through the application of DFT calculations and various theoretical models, the presence of tetrel bonding interactions was validated, and the contribution of the CMe⋅⋅⋅X-IrIII interaction was assessed. The reinforcement of the tetrel bond upon the isocyanide coordination to iridium(III) is substantiated by molecular electrostatic potential (MEP) surface calculations. To distinguish the tetrel bonding characteristics of CMe⋅⋅⋅X-IrIII (X=Cl, Br) interactions from conventional hydrogen bonding, we employed multiple computational methodologies, including Natural Bond Orbital (NBO) analysis and Electron Localization Function (ELF) analysis. Additionally, Energy Decomposition Analysis (EDA) was applied to selected model systems to explore the underlying physical nature of these interactions.
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Affiliation(s)
- Mikhail Yu Gusak
- Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Mikhail A Kinzhalov
- Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Antonio Frontera
- Department of Chemistry, Universitat de les Illes Balears, Crta de Valldemossa km 7.5., 07122, Palma de Mallorca (Baleares), Spain
| | - Nadezhda A Bokach
- Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
| | - Vadim Yu Kukushkin
- Saint Petersburg State University, Universitetskaya Nab. 7/9, Saint Petersburg, 199034, Russian Federation
- Institute of Chemistry and Pharmaceutical Technologies, Altai State University, 656049, Barnaul, Russian Federation
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4
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Barrena-Espés D, Munárriz J, Martín Pendás Á. How electrons still guard the space: Electron number distribution functions based on QTAIM∩ELF intersections. J Chem Phys 2024; 160:144106. [PMID: 38591678 DOI: 10.1063/5.0199318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Accepted: 03/24/2024] [Indexed: 04/10/2024] Open
Abstract
Despite the importance of the one-particle picture provided by the orbital paradigm, a rigorous understanding of the spatial distribution of electrons in molecules is still of paramount importance to chemistry. Considerable progress has been made following the introduction of topological approaches, capable of partitioning space into chemically meaningful regions. They usually provide atomic partitions, for example, through the attraction basins of the electron density in the quantum theory of atoms in molecules (QTAIM) or electron-pair decompositions, as in the case of the electron localization function (ELF). In both cases, the so-called electron distribution functions (EDFs) provide a rich statistical description of the electron distribution in these spatial domains. Here, we take the EDF concept to a new fine-grained limit by calculating EDFs in the QTAIM ∩ ELF intersection domains. As shown in AHn systems based on main group elements, as well as in the CO, NO, and BeO molecules, this approach provides an exquisitely detailed picture of the electron distribution in molecules, allowing for an insightful combination of the distribution of electrons between Lewis entities (such as bonds and lone pairs) and atoms at the same time. Besides mean-field calculations, we also explore the impact of electron correlation through Hartree-Fock (HF), density functional theory (DFT) (B3LYP), and CASSCF calculations.
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Affiliation(s)
- Daniel Barrena-Espés
- Departamento de Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain
| | - Julen Munárriz
- Departamento de Química Física and Instituto de Biocomputación y Física de Sistemas Complejos (BIFI), Universidad de Zaragoza, 50009 Zaragoza, Spain
| | - Ángel Martín Pendás
- Departamento de Química Física y Analítica, Universidad de Oviedo, 33006 Oviedo, Spain
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5
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Pham PTT, Bader MM. Di- and Tricyanovinyl-Substituted Triphenylamines: Structural and Computational Studies. ACS OMEGA 2024; 9:11194-11199. [PMID: 38496938 PMCID: PMC10938432 DOI: 10.1021/acsomega.3c05312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/22/2023] [Revised: 01/26/2024] [Accepted: 02/06/2024] [Indexed: 03/19/2024]
Abstract
We report herein on the solid-state structures of three closely related triphenylamine derivatives endowed with tricyanovinyl (TCV) and dicyanovinyl (DCV) groups. The molecules described contain structural features commonly found in the design of functional organic materials, especially donor-acceptor molecular and polymeric architectures. The common feature noticeable in these structures is the impact of these exceptionally strong electron-accepting groups in forcing partial planarity of the portion of the molecule carrying these groups and directing the molecular packing in the solid state, resulting in the formation of π-stacks of dimers within the unit cell of each. Stacks are formed between phenyl groups bearing electron-accepting groups on two adjacent molecules. Short π-π stack distances ranging from 3.283 to 3.671 Å were observed. Such motif patterns are thought to be conducive for better charge transport in organic semiconductors and enhanced device performance. Intramolecular charge transfer is evident from the shortening of the observed experimental bond lengths in all three compounds. The nitrogen atoms (of the cyano groups) have been shown to be extensively involved in short contacts in all three structures, primarily through C-H···NC interactions with distances as short as 2.462 Å. The compounds reported here are (3,3-dicyano-2-(4-(diphenylamino)phenyl)-1λ3-allylidene)amide or tricyanovinyltriphenylamine, Ph3NTCV (1); 2-(4-(diphenylamino)benzylidene)-malononitrile or dicyanovinyltriphenylamine, Ph3NDCV (2); and (3,3-dicyano-2-(4-(di-p-tolylamino)phenyl)-1λ3-allylidene)amide or dimethyltricyanovinyltriphenylamine, Me2Ph3NTCV (3). Results of density functional theory calculations using DFT-B3LYP/6-31G(d,p) indicate the lowering of LUMO levels as a result of the introduction of these groups with band gaps of 3.13, 2.61, and 2.55 eV for compounds 1-3, respectively, compared with 4.65 eV calculated for triphenylamine. This is supported by the electronic and fluorescence spectra of these molecules with absorption λmax of 483, 515, and 545 nm for compounds 1, 2, and 3, respectively.
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Affiliation(s)
- Phuong-Truc T. Pham
- Department
of Chemistry, Pennsylvania State University, Scranton, Pennsylvania 18512, United States
| | - Mamoun M. Bader
- Department
of Chemistry, Alfaisal University, Riyadh 15333, Saudi Arabia
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6
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Song J, Wang M, Xu X, Shao Q, Zhao Y, Zhang G, Sun N. Charge-Shift Bonding Propensity in Halogen-Bonded BXY (B Is a Small Lewis Base H 2O or NH 3; X and Y Are Halogen Atoms) Complexes: An NBO/NRT/AIM Investigation. Molecules 2023; 28:6212. [PMID: 37687041 PMCID: PMC10489069 DOI: 10.3390/molecules28176212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 08/21/2023] [Accepted: 08/21/2023] [Indexed: 09/10/2023] Open
Abstract
Charge-shift (CS) bonding is a new bonding paradigm in the field of chemical bonds. Our recent study has revealed that certain Cu/Ag/Au-bonds display both CS bonding and ω-bonding characters. In this investigation, we extend our study to halogen bonding. Our focus is on scrutinizing the CS bonding in halogen-bonded BXY (B is a small Lewis base H2O or NH3; X and Y are halogen atoms) complexes by using natural bond orbital (NBO) analysis, natural resonance theory (NRT), and atoms in molecules (AIM) methods. The primary objective is to establish a connection between halogen bonding (B-X) in BXY and CS bonding in free XY (di-halogens). The calculations indicate that the studied BXY can be classified into two types. One type with a weak halogen bond shows closed-shell interaction. The other type with a stronger B-X interaction exhibits both CS bonding and ω-bonding characters (as seen in NH3ClF, NH3BrF, and NH3IF). Another interesting finding is a novel propensity that the CS bonding in free XY tends to carry over the halogen bonding in BXY, and the same propensity is found in Cu/Ag/Au ω-bonded species. The present study may offer an approach to probe CS bonding in many more 3c/4e ω-bonded molecules.
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Affiliation(s)
- Junjie Song
- Key Laboratory of Molecular and Nano Probes, Ministry of Education, College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, China
- Key Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Mengyang Wang
- Key Laboratory of Molecular and Nano Probes, Ministry of Education, College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, China
| | - Xiaocheng Xu
- Key Laboratory of Organic Optoelectronics and Molecular Engineering of the Ministry of Education, Department of Chemistry, Tsinghua University, Beijing 100084, China
| | - Qinghao Shao
- Key Laboratory of Molecular and Nano Probes, Ministry of Education, College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, China
| | - Ying Zhao
- Key Laboratory of Molecular and Nano Probes, Ministry of Education, College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, China
| | - Guiqiu Zhang
- Key Laboratory of Molecular and Nano Probes, Ministry of Education, College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, China
| | - Nan Sun
- Key Laboratory of Molecular and Nano Probes, Ministry of Education, College of Chemistry, Chemical Engineering and Materials Science, Shandong Normal University, Jinan 250014, China
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7
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Jiang Y, Hu Z, Yang Y, Peng P, Zhong C, Sun H, Sun Z, Wang XB. Beyond Duality: Rationalizing Repulsive Coulomb Barriers in Host-Guest Cyclodextrin-Dodecaborate Complexes. J Phys Chem Lett 2023:6736-6742. [PMID: 37470699 DOI: 10.1021/acs.jpclett.3c01345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/21/2023]
Abstract
The repulsive Coulomb barrier (RCB), an intrinsic potential energy barrier along electron detachment or charge-separation coordinates in multiply charged anions (MCAs), provides dynamic stability to MCAs whose electronic and thermodynamic stabilities are largely dictated by strong internal Coulomb repulsions. Spectroscopic and theoretical characterizations of the RCB have been focused on isolated MCAs. In this work, we extend the RCB investigation beyond the previous scope by including noncovalent host-guest cyclodextrin-closo-dodecaborate dianionic complexes χCD·B12X122- (χ = α, β, γ; X = H, F-I). Photodechment photoelectron spectroscopy reveals the existence of two distinctly different RCBs, derived from detaching electrons from the guest dianions (RCB1) or ionizing the host neutrals (RCB2), respectively, with the latter being substantially smaller than the former. Theoretical calculations support the duality of RCBs in these complexes and further exhibit highly anisotropic nature of the RCBs.
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Affiliation(s)
- Yanrong Jiang
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Zhubin Hu
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Yan Yang
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Peng Peng
- Center for Transformative Science, ShanghaiTech University, Shanghai 201210, China
| | - Cheng Zhong
- College of Chemistry & Molecular Sciences, Wuhan University, Wuhan, Hubei 430072, China
| | - Haitao Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
- Collaborative Innovation Center of Extreme Optics, Shanxi University, Taiyuan, Shanxi 030006, China
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, Shanghai 200062, China
| | - Zhenrong Sun
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Xue-Bin Wang
- Physical Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, Richland, Washington 99352, United States
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8
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Kumar YB, Pandey A, Kumar N, Sastry GN. Binding propensity and selectivity of cationic, anionic, and neutral guests with model hydrophobic hosts: A first principles study. J Comput Chem 2023; 44:432-441. [PMID: 36583416 DOI: 10.1002/jcc.26977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Revised: 06/23/2022] [Accepted: 07/21/2022] [Indexed: 01/03/2023]
Abstract
Computations play a critical role in deciphering the nature of host-guest interactions both at qualitative and quantitative levels. Reliable quantum chemical computations were employed to assess the nature, binding strength, and selectivity of ionic, and neutral guests with benzenoid hosts. Optimized complex structures reveal that alkali and ammonium ions are found to be in the hydrophobic cavity, while halide ions are outside, while both complexes elicit substantial binding energy. The origin of the selectivity of host toward the guest has been traced to the interaction and deformation energies, and the nature of associated interactions is quantified using energy decomposition and the Quantum Theory of Atoms in Molecules analyses. While the larger hosts lead to loosely bound complexes, as assessed by the longer intermolecular distances, the binding strengths are proportional to the size of the host systems. The binding of cationic complexes is electrostatic or polarization driven while exchange term dominates the anionic complexes. In contrast, dispersion contribution is a key in neutral complexes and plays a pivotal role in stabilizing the polyatomic complexes.
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Affiliation(s)
- Yenamareddy Bhargav Kumar
- Advanced Computation and Data Sciences Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
| | - Anwesh Pandey
- Advanced Computation and Data Sciences Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India
| | - Nandan Kumar
- Advanced Computation and Data Sciences Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India
| | - G Narahari Sastry
- Advanced Computation and Data Sciences Division, CSIR-North East Institute of Science and Technology, Jorhat, Assam, India.,Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, Uttar Pradesh, India
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9
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Khodia S, Jarupula R, Maity S. Accurate measurement of sequential Ar desorption energies from the dispersion-dominated Ar 1-3 complexes of aromatic molecules. Phys Chem Chem Phys 2023; 25:2510-2516. [PMID: 36602110 DOI: 10.1039/d2cp04676h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We present experimental determination of the energies associated with the gradual desorption of Ar atoms from the aromatic molecular surface. Non-covalently bound 2,2'-pyridylbenzimidazole-Ar1-3 complexes were produced in the gas phase and characterized using resonant two-photon ionization (R2PI) spectroscopy. The single Ar desorption from the PBI-Ar, PBI-Ar2 and PBI-Ar3 complexes were measured as 581 ± 18, 656 ± 30 and 537 ± 31 cm-1, respectively. The energies were bracketed between the last observed band in the respective R2PI spectra and the disappeared intramolecular modes of PBI. The Arn dissociation energies in the S1 state were measured as 581 ± 18, 1237 ± 48 and 1774 ± 79 cm-1, respectively, for n = 1, 2 and 3. The calculated dissociation energies of the respective complexes, obtained using three computational methods, show excellent agreement with the experimental data. The ground state dissociation energies were estimated by subtracting the Δν shift of the origin band, and the respective values are 541 ± 18, 1160 ± 48 and 1634 ± 79 cm-1. Overall, the calculated values resulted in scaling factors ranging from 0.956 to 1.017, which depict the predictive power of the methods to determine dispersion energies. The current investigation describes a unique methodology to accurately determine the dissociation and desorption energies of Ar atoms from the surfaces of bio-relevant aromatic molecules.
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Affiliation(s)
- Saurabh Khodia
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi, Sangareddy, 502285, India.
| | - Ramesh Jarupula
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi, Sangareddy, 502285, India.
| | - Surajit Maity
- Department of Chemistry, Indian Institute of Technology Hyderabad, Kandi, Sangareddy, 502285, India.
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10
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Lone pair-π interaction induced regioselective sulfonation of ethers under light irradiation. GREEN SYNTHESIS AND CATALYSIS 2022. [DOI: 10.1016/j.gresc.2022.12.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
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11
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Lal Koner A, Chopra D, Patil NT. AIEgens Based on Anion-π + Interactions: Design, Synthesis, Photophysical Properties, and Their Applications in Material Science and Biology. Chembiochem 2022; 23:e202200320. [PMID: 35945807 DOI: 10.1002/cbic.202200320] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2022] [Revised: 08/08/2022] [Indexed: 02/03/2023]
Abstract
The design of novel aggregation-induced emission luminogens (AIEgens), has generally been facilitated by disrupting the possibility of π-π stacking. The recent literature describes a novel strategy to design AIEgens by introducing anion-π+ interactions to prevent the detrimental π-π stacking. This new strategy provides access to intrinsically charged AIEgens whose photophysical properties can be tuned either by incorporating different substituents on the π-molecular scaffold to modulate the acidity for tuning the interaction energy between a π-acceptor and counter-anions. This concept article provides a brief overview of the field, focusing on the synthesis of AIEgens, their photophysical properties, crystallography studies and their applications in live cell fluorescence imaging.
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Affiliation(s)
- Apurba Lal Koner
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Deepak Chopra
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
| | - Nitin T Patil
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhopal Bypass Road, Bhauri, Bhopal, 462 066, India
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12
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pH-induced structural variations of two new Mg(II)-PDA complexes: experimental and theoretical studies. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.133373] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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13
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Facile synthesis of two novel micro Ag-Cyanamide derivatives and different approach of 4-CyBA preparation, characterization and in vitro evaluations (anti-bacterial and toxicity properties). J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134218] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Insight into non-covalent interactions in 1D Gd-based coordination polymer for solid-state self-assembly through a new supramolecular synthon. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.134204] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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15
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Mohanty P, Mandal A, Jali BR, Nath B. Conformational polymorphs and solvates of 1-(6-aminopyridin2-yl)-3-phenylthiourea. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2022.132859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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16
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Mule RD, Roy R, Mandal K, Chopra D, Dutta T, Sancheti SP, Shinde PS, Banerjee S, Lal Koner A, Bhowal R, Senthilkumar B, Patil NT. Interplay of Anion‐π
+
and π
+
‐π
+
Interactions in Novel Pyrido[2,1‐
a
]isoquinolinium‐Based AIEgens ‐ Substituent‐ and Counterion‐Dependent Fluorescence Modulation and Applications in Live Cell Mitochondrial Imaging**. Chemistry 2022; 28:e202200632. [DOI: 10.1002/chem.202200632] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Indexed: 12/20/2022]
Affiliation(s)
- Ravindra D. Mule
- Division of Organic Chemistry CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- Academy of Scientific and Innovative Research Ghaziabad 201 002 India
| | - Rupam Roy
- Bionanotechnology Laboratory Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Koushik Mandal
- Crystallography and Crystal Chemistry Laboratory Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Deepak Chopra
- Crystallography and Crystal Chemistry Laboratory Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Tanoy Dutta
- Bionanotechnology Laboratory Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Shashank P. Sancheti
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Popat S. Shinde
- Division of Organic Chemistry CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- Academy of Scientific and Innovative Research Ghaziabad 201 002 India
| | - Somsuvra Banerjee
- Division of Organic Chemistry CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- Academy of Scientific and Innovative Research Ghaziabad 201 002 India
| | - Apurba Lal Koner
- Bionanotechnology Laboratory Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Rohit Bhowal
- Crystallography and Crystal Chemistry Laboratory Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
| | - Beeran Senthilkumar
- Division of Organic Chemistry CSIR-National Chemical Laboratory Dr. Homi Bhabha Road Pune 411008 India
- Academy of Scientific and Innovative Research Ghaziabad 201 002 India
| | - Nitin T. Patil
- Department of Chemistry Indian Institute of Science Education and Research Bhopal Bhopal Bypass Road, Bhauri Bhopal 462 066 India
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Bisht R, Haldar C, Hassan MMM, Hoque ME, Chaturvedi J, Chattopadhyay B. Metal-catalysed C-H bond activation and borylation. Chem Soc Rev 2022; 51:5042-5100. [PMID: 35635434 DOI: 10.1039/d1cs01012c] [Citation(s) in RCA: 72] [Impact Index Per Article: 36.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Transition metal-catalysed direct borylation of hydrocarbons via C-H bond activation has received a remarkable level of attention as a popular reaction in the synthesis of organoboron compounds owing to their synthetic versatility. While controlling the site-selectivity was one of the most challenging issues in these C-H borylation reactions, enormous efforts of several research groups proved instrumental in dealing with selectivity issues that presently reached an impressive level for both proximal and distal C-H bond borylation reactions. For example, in the case of ortho C-H bond borylation reactions, innovative methodologies have been developed either by the modification of the directing groups attached with the substrates or by creating new catalytic systems via the design of new ligand frameworks. Whereas meta and para selective C-H borylations remained a formidable challenge, numerous innovative concepts have been developed within a very short period of time by the development of new catalytic systems with the employment of various noncovalent interactions. Moreover, significant advancements have occurred for aliphatic C(sp3)-H borylations as well as enantioselective borylations. In this review article, we aim to discuss and summarize the different approaches and findings related to the development of directed proximal ortho, distal meta/para, aliphatic (racemic and enantioselective) borylation reactions since 2014. Additionally, considering the C-H borylation reaction as one of the most important mainstream reactions, various applications of this C-H borylation reaction toward the synthesis of natural products, therapeutics, and applications in materials chemistry will be summarized in the last part of this review article.
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Affiliation(s)
- Ranjana Bisht
- Center of Bio-Medical Research, Division of Molecular Synthesis & Drug Discovery, SGPGIMS Campus, Raebareli Road, Lucknow 226014, Uttar Pradesh, India.
| | - Chabush Haldar
- Center of Bio-Medical Research, Division of Molecular Synthesis & Drug Discovery, SGPGIMS Campus, Raebareli Road, Lucknow 226014, Uttar Pradesh, India.
| | - Mirja Md Mahamudul Hassan
- Center of Bio-Medical Research, Division of Molecular Synthesis & Drug Discovery, SGPGIMS Campus, Raebareli Road, Lucknow 226014, Uttar Pradesh, India.
| | - Md Emdadul Hoque
- Center of Bio-Medical Research, Division of Molecular Synthesis & Drug Discovery, SGPGIMS Campus, Raebareli Road, Lucknow 226014, Uttar Pradesh, India.
| | - Jagriti Chaturvedi
- Center of Bio-Medical Research, Division of Molecular Synthesis & Drug Discovery, SGPGIMS Campus, Raebareli Road, Lucknow 226014, Uttar Pradesh, India.
| | - Buddhadeb Chattopadhyay
- Center of Bio-Medical Research, Division of Molecular Synthesis & Drug Discovery, SGPGIMS Campus, Raebareli Road, Lucknow 226014, Uttar Pradesh, India.
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Bhandary S, Pathigoolla A, Madhusudhanan MC, Sureshan KM. Azide–Alkyne Interactions: A Crucial Attractive Force for Their Preorganization for Topochemical Cycloaddition Reaction. Chemistry 2022; 28:e202200820. [DOI: 10.1002/chem.202200820] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Indexed: 12/17/2022]
Affiliation(s)
- Subhrajyoti Bhandary
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Atchutarao Pathigoolla
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Mithun C. Madhusudhanan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
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19
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Ferretti A, Prampolini G. Complexes of Alkaline and Ammonium Cations with Dopamine and Eumelanin Precursors: Dissecting the Role of Noncovalent Cation-π and Cation-Lone Pair (σ-Type) Interactions. J Phys Chem A 2022; 126:2330-2341. [PMID: 35394779 DOI: 10.1021/acs.jpca.2c00333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Cation-π interactions and their possible competition with other noncovalent interactions (NCI) might play a key role in both dopamine- and eumelanin-based bioinspired materials. In this contribution, to unravel the delicate interplay between cation-π interactions and other possible competing forces, the configurational space of noncovalent complexes formed by dopamine or eumelanin precursors (o-benzoquinone, DHI and a semiquinone dimer) and three different cations (Na+, K+, and NH4+) is sampled by means of accurate ab initio calculations. To this end, we resort to the mp2mod method, recently validated by us for benzene-, phenol-, and catechol-cation complexes, whose computational convenience allows for an extensive exploration of the cation-molecule interaction energy surface, by sampling a total of more than 104 arrangements. The mp2mod interaction energy landscapes reveal that, besides the expected cation-π driven arrangements, for all considered molecule-cation pairs the most stable complexes are found when the cation lies within the plane containing the six-membered ring, thus maximizing the σ-type interaction with the oxygen's lone pairs. Due to the loss of aromaticity, the σ-type/cation-π strength ratio is remarkably large in o-benzoquinone, where cation-π complexes seem unlikely to be formed. The above features are shared among all considered cations but are significantly larger when considering the smaller Na+. Besides delivering a deeper insight onto the NCI network established by the considered precursors in the presence of ions, the present results can serve as a reference database to validate or refine lower level methods, as, for instance, the force fields employed in classical simulations.
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Affiliation(s)
- Alessandro Ferretti
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Giacomo Prampolini
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
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20
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Liu J, Wang Z, Cheng P, Zaworotko MJ, Chen Y, Zhang Z. Post-synthetic modifications of metal–organic cages. Nat Rev Chem 2022; 6:339-356. [PMID: 37117929 DOI: 10.1038/s41570-022-00380-y] [Citation(s) in RCA: 56] [Impact Index Per Article: 28.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/03/2022] [Indexed: 12/18/2022]
Abstract
Metal-organic cages (MOCs) are discrete, supramolecular entities that consist of metal nodes and organic linkers, which can offer solution processability and high porosity. Thereby, their predesigned structures can undergo post-synthetic modifications (PSMs) to introduce new functional groups and properties by modifying the linker, metal node, pore or surface environment. This Review explores current PSM strategies used for MOCs, including covalent, coordination and noncovalent methods. The effects of newly introduced functional groups or generated complexes upon the PSMs of MOCs are also detailed, such as improving structural stability or endowing desired functionalities. The development of the aforementioned design principles has enabled systematic approaches for the development and characterization of families of MOCs and, thereby, provides insight into structure-function relationships that will guide future developments.
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21
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Mao Y, Xu Z, He Z, Wang J, Zhu Z. Wet-adhesive materials of oral and maxillofacial region: From design to application. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2022.04.059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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22
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Schneider H. Noncovalent interactions: A brief account of a long history. J PHYS ORG CHEM 2022. [DOI: 10.1002/poc.4340] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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23
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Non-Covalent Interactions in Organic, Organometallic, and Inorganic Supramolecular Systems Relevant for Medicine, Materials Science, and Catalysis. CRYSTALS 2022. [DOI: 10.3390/cryst12020246] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
The structure, fundamental properties, and reactivity of chemical systems at various hierarchical levels of organization of matter is the paradigm of chemistry. A qualitative and quantitative description of various intermolecular and intramolecular non-covalent interactions in chemical systems is the main tool for supramolecular design and the driving force of smart prediction of kinetic and thermodynamic parameters of chemical reactions. This perspective is dedicated to highlighting the recent progress of our research group in the investigation of various non-covalent contacts in organic, organometallic, and inorganic chemical systems relevant for medicine, materials science, and catalysis. This research is interdisciplinary in nature and lies at the intersection of computer modeling with such natural science disciplines as chemistry, physics, crystallography, biology, and medicine, as well as directly related to materials science and nanotechnology.
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24
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Meng Z, Yang X, Li H. DFT-based theoretical simulation on electronic transition for graphene oxides in solvent media. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2021.118049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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25
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Jezierska A, Panek JJ, Błaziak K, Raczyński K, Koll A. Exploring Intra- and Intermolecular Interactions in Selected N-Oxides-The Role of Hydrogen Bonds. Molecules 2022; 27:792. [PMID: 35164056 PMCID: PMC8846293 DOI: 10.3390/molecules27030792] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 01/20/2022] [Accepted: 01/21/2022] [Indexed: 11/30/2022] Open
Abstract
Intra- and intermolecular interactions have been explored in selected N-oxide derivatives: 2-(N,N-dimethylamino-N-oxymethyl)-4,6-dimethylphenyl (1) and 5,5'-dibromo-3-diethylaminomethyl-2,2'-biphenol N-oxide (2). Both compounds possess intramolecular hydrogen bonding, which is classified as moderate in 1 and strong in 2, and resonance-assisted in both cases. Density Functional Theory (DFT) in its classical formulation as well as Time-Dependent extension (TD-DFT) were employed to study proton transfer phenomena. The simulations were performed in the gas phase and with implicit and explicit solvation models. The obtained structures of the studied N-oxides were compared with experimental data available. The proton reaction path was investigated using scan with an optimization method, and water molecule reorientation in the monohydrate of 1 was found upon the proton scan progress. It was found that spontaneous proton transfer phenomenon cannot occur in the electronic ground state of the compound 1. An opposite situation was noticed for the compound 2. The changes of nucleophilicity and electrophilicity upon the bridged proton migration were analyzed on the basis of Fukui functions in the case of 1. The interaction energy decomposition of dimers and microsolvation models was investigated using Symmetry-Adapted Perturbation Theory (SAPT). The simulations were performed in both phases to introduce polar environment influence on the interaction energies. The SAPT study showed rather minor role of induction in the formation of homodimers. However, it is worth noticing that the same induction term is responsible for the preference of water molecules' interaction with N-oxide hydrogen bond acceptor atoms in the microsolvation study. The Natural Bond Orbital (NBO) analysis was performed for the complexes with water to investigate the charge flow upon the polar environment introduction. Finally, the TD-DFT was applied for isolated molecules as well as for microsolvation models showing that the presence of solvent affects excited states, especially when the N-oxide acceptor atom is microsolvated.
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Affiliation(s)
- Aneta Jezierska
- Faculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland; (J.J.P.); (K.R.)
| | - Jarosław J. Panek
- Faculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland; (J.J.P.); (K.R.)
| | - Kacper Błaziak
- Faculty of Chemistry, University of Warsaw, ul. Pasteura 1, 01-224 Warsaw, Poland;
- Biological and Chemical Research Center, University of Warsaw, Żwirki i Wigury 101, 01-224 Warsaw, Poland
| | - Kamil Raczyński
- Faculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland; (J.J.P.); (K.R.)
| | - Aleksander Koll
- Non-Public Medical School in Wrocław, ul. Nowowiejska 69, 50-340 Wrocław, Poland;
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26
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Zhao X, Zhu W. Recent advances in studying the nonnegligible role of noncovalent interactions in various types of energetic molecular crystals. CrystEngComm 2022. [DOI: 10.1039/d2ce00984f] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
This highlight summarizes the research progress on the considerable effects of noncovalent interactions on diverse types of energetic materials and enlighten us to explore new factors that affect the key performance of explosives.
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Affiliation(s)
- Xiao Zhao
- Institute for Computation in Molecular and Materials Science, School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing 210094, China
| | - Weihua Zhu
- Institute for Computation in Molecular and Materials Science, School of Chemistry and Chemical Engineering, Nanjing University of Science and Technology, Nanjing 210094, China
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27
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Liu Q, Lu Y, Sheng H, Zhang C, Su X, Wang Z, Chen X. Visible‐Light‐Induced Selective Photolysis of Phosphonium Iodide Salts for Monofluoromethylations. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202111006] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Affiliation(s)
- Qiang Liu
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - Yu Lu
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - He Sheng
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - Chao‐Shen Zhang
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - Xiao‐Di Su
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - Zhi‐Xiang Wang
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
| | - Xiang‐Yu Chen
- School of Chemical Sciences University of Chinese Academy of Sciences Beijing 100049 China
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28
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How do molecular interactions affect fluorescence behavior of AIEgens in solution and aggregate states? Sci China Chem 2021. [DOI: 10.1007/s11426-021-1083-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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29
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Exploiting non-covalent interactions in selective carbohydrate synthesis. Nat Rev Chem 2021; 5:792-815. [PMID: 37117666 DOI: 10.1038/s41570-021-00324-y] [Citation(s) in RCA: 31] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/10/2021] [Indexed: 02/08/2023]
Abstract
Non-covalent interactions (NCIs) are a vital component of biological bond-forming events, and have found important applications in multiple branches of chemistry. In recent years, the biomimetic exploitation of NCIs in challenging glycosidic bond formation and glycofunctionalizations has attracted significant interest across diverse communities of organic and carbohydrate chemists. This emerging theme is a major new direction in contemporary carbohydrate chemistry, and is rapidly gaining traction as a robust strategy to tackle long-standing issues such as anomeric and site selectivity. This Review thus seeks to provide a bird's-eye view of wide-ranging advances in harnessing NCIs within the broad field of synthetic carbohydrate chemistry. These include the exploitation of NCIs in non-covalent catalysed glycosylations, in non-covalent catalysed glycofunctionalizations, in aglycone delivery, in stabilization of intermediates and transition states, in the existence of intramolecular hydrogen bonding networks and in aggregation by hydrogen bonds. In addition, recent emerging opportunities in exploiting halogen bonding and other unconventional NCIs, such as CH-π, cation-π and cation-n interactions, in various aspects of carbohydrate chemistry are also examined.
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30
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Wan Q, Liu H, Deng Z, Bu J, Li T, Yang Y, Zhong S. A critical review of molecularly imprinted solid phase extraction technology. JOURNAL OF POLYMER RESEARCH 2021. [DOI: 10.1007/s10965-021-02744-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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31
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Naphthazarin Derivatives in the Light of Intra- and Intermolecular Forces. Molecules 2021; 26:molecules26185642. [PMID: 34577113 PMCID: PMC8468954 DOI: 10.3390/molecules26185642] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2021] [Revised: 09/04/2021] [Accepted: 09/14/2021] [Indexed: 11/17/2022] Open
Abstract
Our long-term investigations have been devoted the characterization of intramolecular hydrogen bonds in cyclic compounds. Our previous work covers naphthazarin, the parent compound of two systems discussed in the current work: 2,3-dimethylnaphthazarin (1) and 2,3-dimethoxy-6-methylnaphthazarin (2). Intramolecular hydrogen bonds and substituent effects in these compounds were analyzed on the basis of Density Functional Theory (DFT), Møller-Plesset second-order perturbation theory (MP2), Coupled Clusters with Singles and Doubles (CCSD) and Car-Parrinello Molecular Dynamics (CPMD). The simulations were carried out in the gas and crystalline phases. The nuclear quantum effects were incorporated a posteriori using the snapshots taken from ab initio trajectories. Further, they were used to solve a vibrational Schrödinger equation. The proton reaction path was studied using B3LYP, ωB97XD and PBE functionals with a 6-311++G(2d,2p) basis set. Two energy minima (deep and shallow) were found, indicating that the proton transfer phenomena could occur in the electronic ground state. Next, the electronic structure and topology were examined in the molecular and proton transferred (PT) forms. The Atoms In Molecules (AIM) theory was employed for this purpose. It was found that the hydrogen bond is stronger in the proton transferred (PT) forms. In order to estimate the dimers' stabilization and forces responsible for it, the Symmetry-Adapted Perturbation Theory (SAPT) was applied. The energy decomposition revealed that dispersion is the primary factor stabilizing the dimeric forms and crystal structure of both compounds. The CPMD results showed that the proton transfer phenomena occurred in both studied compounds, as well as in both phases. In the case of compound 2, the proton transfer events are more frequent in the solid state, indicating an influence of the environmental effects on the bridged proton dynamics. Finally, the vibrational signatures were computed for both compounds using the CPMD trajectories. The Fourier transformation of the autocorrelation function of atomic velocity was applied to obtain the power spectra. The IR spectra show very broad absorption regions between 700 cm-1-1700 cm-1 and 2300 cm-1-3400 cm-1 in the gas phase and 600 cm-1-1800 cm-1 and 2200 cm-1-3400 cm-1 in the solid state for compound 1. The absorption regions for compound 2 were found as follows: 700 cm-1-1700 cm-1 and 2300 cm-1-3300 cm-1 for the gas phase and one broad absorption region in the solid state between 700 cm-1 and 3100 cm-1. The obtained spectroscopic features confirmed a strong mobility of the bridged protons. The inclusion of nuclear quantum effects showed a stronger delocalization of the bridged protons.
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Liu Q, Lu Y, Sheng H, Zhang CS, Su XD, Wang ZX, Chen XY. Visible-Light-Induced Selective Photolysis of Phosphonium Iodide Salts for Monofluoromethylations. Angew Chem Int Ed Engl 2021; 60:25477-25484. [PMID: 34490742 DOI: 10.1002/anie.202111006] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2021] [Indexed: 11/09/2022]
Abstract
The sigma (σ)-hole effect has emerged as a promising tool to construct novel architectures endowed with new properties. A simple yet effective strategy for the generation of monofluoromethyl radicals is a continuing challenge within the synthetic community. Fluoromethylphosphonium salts are easily available, air- and thermally stable, as well as simple-to-handle. Herein, we report the ability of the σ-hole effect to facilitate the visible-light-triggered photolysis of phosphonium iodide salts, a charge-transfer complex, selectively giving fluoromethyl radicals. The usefulness and versatility of this new protocol are demonstrated through the mono-, di-, and trifluoromethylation of a variety of alkenes.
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Affiliation(s)
- Qiang Liu
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yu Lu
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - He Sheng
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Chao-Shen Zhang
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiao-Di Su
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhi-Xiang Wang
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiang-Yu Chen
- School of Chemical Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
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Ferretti A, Prampolini G, d’Ischia M. Noncovalent interactions in catechol/ammonium-rich adhesive motifs: Reassessing the role of cation-π complexes? Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138815] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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34
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Li Y, Yang Z, Zhao X, Zhang J, Ding L, Pan L, Lin C, Zheng X. Practicable self‐healing polyurethane binder for energetic composites combining thermo‐reversible
DA
action and shape‐memory effect. POLYM ADVAN TECHNOL 2021. [DOI: 10.1002/pat.5343] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Yubin Li
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Zhijian Yang
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Xu Zhao
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Jianhu Zhang
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Ling Ding
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Liping Pan
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Congmei Lin
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
| | - Xue Zheng
- Institute of Chemical Materials, China Academy of Engineering Physics Mianyang China
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35
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Jezierska A, Błaziak K, Klahm S, Lüchow A, Panek JJ. Non-Covalent Forces in Naphthazarin-Cooperativity or Competition in the Light of Theoretical Approaches. Int J Mol Sci 2021; 22:ijms22158033. [PMID: 34360798 PMCID: PMC8348774 DOI: 10.3390/ijms22158033] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 07/20/2021] [Accepted: 07/21/2021] [Indexed: 12/27/2022] Open
Abstract
Non-covalent interactions responsible for molecular features and self-assembly in Naphthazarin C polymorph were investigated on the basis of diverse theoretical approaches: Density Functional Theory (DFT), Diffusion Quantum Monte Carlo (DQMC), Symmetry-Adapted Perturbation Theory (SAPT) and Car-Parrinello Molecular Dynamics (CPMD). The proton reaction paths in the intramolecular hydrogen bridges were studied. Two potential energy minima were found indicating that the proton transfer phenomena occur in the electronic ground state. Diffusion Quantum Monte Carlo (DQMC) and other levels of theory including Coupled Cluster (CC) employment enabled an accurate inspection of Potential Energy Surface (PES) and revealed the energy barrier for the proton transfer. The structure and reactivity evolution associated with the proton transfer were investigated using Harmonic Oscillator Model of Aromaticity - HOMA index, Fukui functions and Atoms In Molecules (AIM) theory. The energy partitioning in the studied dimers was carried out based on Symmetry-Adapted Perturbation Theory (SAPT) indicating that dispersive forces are dominant in the structure stabilization. The CPMD simulations were performed at 60 K and 300 K in vacuo and in the crystalline phase. The temperature influence on the bridged protons dynamics was studied and showed that the proton transfer phenomena were not observed at 60 K, but the frequent events were noticed at 300 K in both studied phases. The spectroscopic signatures derived from the CPMD were computed using Fourier transformation of autocorrelation function of atomic velocity for the whole molecule and bridged protons. The computed gas-phase IR spectra showed two regions with OH absorption that covers frequencies from 2500 cm−1 to 2800 cm−1 at 60 K and from 2350 cm−1 to 3250 cm−1 at 300 K for both bridged protons. In comparison, the solid state computed IR spectra revealed the environmental influence on the vibrational features. For each of them absorption regions were found between 2700–3100 cm−1 and 2400–2850 cm−1 at 60 K and 2300–3300 cm−1 and 2300–3200 cm−1 at 300 K respectively. Therefore, the CPMD study results indicated that there is a cooperation of intramolecular hydrogen bonds in Naphthazarin molecule.
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Affiliation(s)
- Aneta Jezierska
- Faculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland;
- Correspondence: (A.J.); (K.B.)
| | - Kacper Błaziak
- Faculty of Chemistry, University of Warsaw, ul. Pasteura 1, 01-224 Warsaw, Poland
- Biological and Chemical Research Center, University of Warsaw, Żwirki i Wigury 101, 01-224 Warsaw, Poland
- Correspondence: (A.J.); (K.B.)
| | - Sebastian Klahm
- Institute of Physical Chemistry, RWTH Aachen University, 52056 Aachen, Germany; (S.K.); (A.L.)
| | - Arne Lüchow
- Institute of Physical Chemistry, RWTH Aachen University, 52056 Aachen, Germany; (S.K.); (A.L.)
| | - Jarosław J. Panek
- Faculty of Chemistry, University of Wrocław, ul. F. Joliot-Curie 14, 50-383 Wrocław, Poland;
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Calabrese C, Temelso B, Usabiaga I, Seifert NA, Basterretxea FJ, Prampolini G, Shields GC, Pate BH, Evangelisti L, Cocinero EJ. The Role of Non-Covalent Interactions on Cluster Formation: Pentamer, Hexamers and Heptamer of Difluoromethane. Angew Chem Int Ed Engl 2021; 60:16894-16899. [PMID: 34028158 PMCID: PMC8362204 DOI: 10.1002/anie.202103900] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2021] [Revised: 04/27/2021] [Indexed: 01/30/2023]
Abstract
The role of non-covalent interactions (NCIs) has broadened with the inclusion of new types of interactions and a plethora of weak donor/acceptor partners. This work illustrates the potential of chirped-pulse Fourier transform microwave technique, which has revolutionized the field of rotational spectroscopy. In particular, it has been exploited to reveal the role of NCIs' in the molecular self-aggregation of difluoromethane where a pentamer, two hexamers and a heptamer were detected. The development of a new automated assignment program and a sophisticated computational screening protocol was essential for identifying the homoclusters in conditions of spectral congestion. The major role of dispersion forces leads to less directional interactions and more distorted structures than those found in polar clusters, although a detailed analysis demonstrates that the dominant interaction energy is the pairwise interaction. The tetramer cluster is identified as a structural unit in larger clusters, representing the maximum expression of bond between dimers.
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Affiliation(s)
- Camilla Calabrese
- Departament of Physical ChemistryUniversity of the Basque Country (UPV/EHU)Barrio Sarriena, S/N48940LeioaSpain
- Instituto Biofisika (UPV/EHU, CSIC)48940LeioaSpain
- Fundación Biofísica Bizkaia/Biofisika Bizkaia Fundazioa (FBB)48940LeioaSpain
| | - Berhane Temelso
- George Mason UniversityInformation Technology ServicesFairfaxVA22030USA
| | - Imanol Usabiaga
- Departament of Physical ChemistryUniversity of the Basque Country (UPV/EHU)Barrio Sarriena, S/N48940LeioaSpain
- Instituto Biofisika (UPV/EHU, CSIC)48940LeioaSpain
- Dipartimento di Chimica “Giacomo Ciamician”Università degli Studi di Bolognavia S. Alberto 16348100RavennaItaly
| | - Nathan A. Seifert
- Department of ChemistryUniversity of VirginiaMcCormick RoadCharlottesvilleVA22903USA
| | - Francisco J. Basterretxea
- Departament of Physical ChemistryUniversity of the Basque Country (UPV/EHU)Barrio Sarriena, S/N48940LeioaSpain
| | - Giacomo Prampolini
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR)Area della Ricercavia G. Moruzzi 156124PisaItaly
| | | | - Brooks H. Pate
- Department of ChemistryUniversity of VirginiaMcCormick RoadCharlottesvilleVA22903USA
| | - Luca Evangelisti
- Dipartimento di Chimica “Giacomo Ciamician”Università degli Studi di Bolognavia S. Alberto 16348100RavennaItaly
| | - Emilio J. Cocinero
- Departament of Physical ChemistryUniversity of the Basque Country (UPV/EHU)Barrio Sarriena, S/N48940LeioaSpain
- Instituto Biofisika (UPV/EHU, CSIC)48940LeioaSpain
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37
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Calabrese C, Temelso B, Usabiaga I, Seifert NA, Basterretxea FJ, Prampolini G, Shields GC, Pate BH, Evangelisti L, Cocinero EJ. The Role of Non‐Covalent Interactions on Cluster Formation: Pentamer, Hexamers and Heptamer of Difluoromethane. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202103900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Camilla Calabrese
- Departament of Physical Chemistry University of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
- Instituto Biofisika (UPV/EHU, CSIC) 48940 Leioa Spain
- Fundación Biofísica Bizkaia/Biofisika Bizkaia Fundazioa (FBB) 48940 Leioa Spain
| | - Berhane Temelso
- George Mason University Information Technology Services Fairfax VA 22030 USA
| | - Imanol Usabiaga
- Departament of Physical Chemistry University of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
- Instituto Biofisika (UPV/EHU, CSIC) 48940 Leioa Spain
- Dipartimento di Chimica “Giacomo Ciamician” Università degli Studi di Bologna via S. Alberto 163 48100 Ravenna Italy
| | - Nathan A. Seifert
- Department of Chemistry University of Virginia McCormick Road Charlottesville VA 22903 USA
| | - Francisco J. Basterretxea
- Departament of Physical Chemistry University of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
| | - Giacomo Prampolini
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR) Area della Ricerca via G. Moruzzi 1 56124 Pisa Italy
| | | | - Brooks H. Pate
- Department of Chemistry University of Virginia McCormick Road Charlottesville VA 22903 USA
| | - Luca Evangelisti
- Dipartimento di Chimica “Giacomo Ciamician” Università degli Studi di Bologna via S. Alberto 163 48100 Ravenna Italy
| | - Emilio J. Cocinero
- Departament of Physical Chemistry University of the Basque Country (UPV/EHU) Barrio Sarriena, S/N 48940 Leioa Spain
- Instituto Biofisika (UPV/EHU, CSIC) 48940 Leioa Spain
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38
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Hazra A, Mondal U, Mandal S, Banerjee P. Advancement in functionalized luminescent frameworks and their prospective applications as inkjet-printed sensors and anti-counterfeit materials. Dalton Trans 2021; 50:8657-8670. [PMID: 34060577 DOI: 10.1039/d1dt00705j] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Supramolecular luminescent frameworks with conjugated architectures exhibits interesting photophysical properties with phenomenal chemical and thermal stability. This has instigated global researchers towards its extensive application in toxic analyte detection and the formulation of anti-counterfeit materials. In correlation with this present scenario, luminescent metal-organic frameworks (LMOFs), possessing tailorable structural and functional properties and exceptional physicochemical features, have been categorized as emerging 'smart materials'. Interestingly, LMOFs have assisted in the rapid development of an effectual sensing platform and swift fabrication of anti-counterfeit materials on desirable substrates with the aid of 'Inkjet Printing', which is a viable, low-cost, and high-resolution technology. Inkjet printing is an excellent material deposition technique in the modern era owing to its easy settling over flexible substrates, simplistic emergence of large area image patterns with improved throughput, minimal cost, explicit resolution, and least waste generation. The present review provides state-of-the-art progress on LMOFs based (i) luminescent security ink fabrication with static and dynamic multinodal luminescent materials and (ii) sensory device formulation for the easy and instantaneous recognition of hazardous analytes through the 'Inkjet Printing' technology. This techno-chemical integration will be certainly beneficial to prevent the growth of counterfeit materials and monitor the bioaccumulation of hazardous analytes in our ecological system.
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Affiliation(s)
- Abhijit Hazra
- CSIR-Central Mechanical Engineering Research Institute, M. G. Avenue, Durgapur 713209, India. and Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India
| | - Udayan Mondal
- CSIR-Central Mechanical Engineering Research Institute, M. G. Avenue, Durgapur 713209, India. and Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India
| | - Sukdeb Mandal
- CSIR-Central Mechanical Engineering Research Institute, M. G. Avenue, Durgapur 713209, India. and Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India
| | - Priyabrata Banerjee
- CSIR-Central Mechanical Engineering Research Institute, M. G. Avenue, Durgapur 713209, India. and Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201002, Uttar Pradesh, India
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39
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Sattar MA. Interface Structure and Dynamics in Polymer‐Nanoparticle Hybrids: A Review on Molecular Mechanisms Underlying the Improved Interfaces. ChemistrySelect 2021. [DOI: 10.1002/slct.202100831] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Mohammad Abdul Sattar
- R&D Centre MRF Limited Chennai 600019 India
- Colloid and Interface Chemistry Laboratory Department of Chemistry Indian Institute of Technology Madras Chennai 600036 India
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40
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Deka R, Pant R, Gupta A, Naresh Patwari G, Singh HB, Butcher RJ. Isolation of a telluroxane cluster [(R2TeO)(μ-TeO2)(OTeR2)][TeO(OH)2] (R = C6H5NNC6H4) stabilized by intra- and intermolecular secondary bonding interactions: Molecular and electronic structure analysis. Polyhedron 2021. [DOI: 10.1016/j.poly.2021.115037] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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41
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Portela S, Fernández I. Nature of the Hydrogen Bond Enhanced Halogen Bond. Molecules 2021; 26:molecules26071885. [PMID: 33810452 PMCID: PMC8036253 DOI: 10.3390/molecules26071885] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 03/23/2021] [Accepted: 03/24/2021] [Indexed: 12/22/2022] Open
Abstract
The factors responsible for the enhancement of the halogen bond by an adjacent hydrogen bond have been quantitatively explored by means of state-of-the-art computational methods. It is found that the strength of a halogen bond is enhanced by ca. 3 kcal/mol when the halogen donor simultaneously operates as a halogen bond donor and a hydrogen bond acceptor. This enhancement is the result of both stronger electrostatic and orbital interactions between the XB donor and the XB acceptor, which indicates a significant degree of covalency in these halogen bonds. In addition, the halogen bond strength can be easily tuned by modifying the electron density of the aryl group of the XB donor as well as the acidity of the hydrogen atoms responsible for the hydrogen bond.
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42
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Jiménez‐Grávalos F, Gallegos M, Martín Pendás Á, Novikov AS. Challenging the electrostatic
σ
‐hole picture of halogen bonding using minimal models and the interacting quantum atoms approach. J Comput Chem 2021; 42:676-687. [DOI: 10.1002/jcc.26488] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2020] [Revised: 01/10/2021] [Accepted: 01/18/2021] [Indexed: 12/14/2022]
Affiliation(s)
| | - Miguel Gallegos
- Department of Analytical and Physical Chemistry University of Oviedo Oviedo Spain
| | - Ángel Martín Pendás
- Department of Analytical and Physical Chemistry University of Oviedo Oviedo Spain
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43
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Li W, Usabiaga I, Calabrese C, Evangelisti L, Maris A, Favero LB, Melandri S. Characterizing the lone pair⋯π–hole interaction in complexes of ammonia with perfluorinated arenes. Phys Chem Chem Phys 2021; 23:9121-9129. [DOI: 10.1039/d1cp00451d] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Stronger and more flexible lone pair⋯π–hole interaction of ammonia with respect to water in complexes with perfluorinated arenes.
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Affiliation(s)
- Weixing Li
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- Bologna
- Italy
| | - Imanol Usabiaga
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- Bologna
- Italy
| | - Camilla Calabrese
- Department of Physical Chemistry, University of the Basque Country (UPV/EHU), Barrio Sarriena, S/N
- Leioa
- Spain
- Biofisika Institute, (CSIC, UPV/EHU)
- Barrio Sarriena, S/N
| | - Luca Evangelisti
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- Bologna
- Italy
| | - Assimo Maris
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- Bologna
- Italy
| | - Laura B. Favero
- Istituto per lo studio dei materiali nanostrutturati CNR – ISMN
- Bologna
- Italy
| | - Sonia Melandri
- Department of Chemistry “Giacomo Ciamician”
- University of Bologna
- Bologna
- Italy
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44
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Prampolini G, d'Ischia M, Ferretti A. The phenoxyl group-modulated interplay of cation-π and σ-type interactions in the alkali metal series. Phys Chem Chem Phys 2020; 22:27105-27120. [PMID: 33225336 DOI: 10.1039/d0cp03707a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The interaction potential energy surfaces (IPESs) of four alkaline metal cations (Na+, K+, Rb+ and Cs+) complexed with phenol and catechol were explored by accurate ab initio calculations to investigate the interplay of different noncovalent interactions and their behavior along the alkali metal series and upon -OH substitution. Selected one-dimensional interaction energy curves revealed two different minimum energy configurations for all phenol- and catechol-metal complexes, characterized either by cation-π or σ-type interactions. For each investigated complex several two-dimensional IPES maps were also computed, exploiting the computational advantages of the MP2mod approach. The size of the alkali cation was found to play a similar role in modulating both kinds of complexes, as the interaction strength always decreases along the metal series, from Na+ to Cs+. Conversely, the number of hydroxyl substituents markedly affected cation-π complexes vs. σ-type ones. As a most relevant finding, in catechol-metal complexes the strength of cation-π interactions is around half that of the σ-type ones. It is argued that the combined effect of cation dimensions and hydroxyl substitution in catechol-Na+ complexes makes σ-type configurations remarkably more stable and easily accessible than cation-π ones. Besides shedding new light on the origin of biological phenomena connected with underwater adhesion, the quantum mechanical interaction energy database provided herein may offer a useful reference for tuning accurate force fields, suitable for molecular dynamics simulations, where environmental effects might be also taken into account.
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Affiliation(s)
- Giacomo Prampolini
- Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy.
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Sluysmans D, Zhang L, Li X, Garci A, Stoddart JF, Duwez AS. Viologen Tweezers to Probe the Force of Individual Donor–Acceptor π-Interactions. J Am Chem Soc 2020; 142:21153-21159. [DOI: 10.1021/jacs.0c10339] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Damien Sluysmans
- Research Unit MolSys, NanoChem, University of Liege, Sart-Tilman, B6a, Liege 4000, Belgium
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Long Zhang
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Xuesong Li
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - Amine Garci
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
| | - J. Fraser Stoddart
- Department of Chemistry, Northwestern University, 2145 Sheridan Road, Evanston, Illinois 60208-3113, United States
- Institute for Molecular Design and Synthesis, Tianjin University, Tianjin 300072, China
- School of Chemistry, University of New South Wales, Sydney, New South Wales 2052, Australia
| | - Anne-Sophie Duwez
- Research Unit MolSys, NanoChem, University of Liege, Sart-Tilman, B6a, Liege 4000, Belgium
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46
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Ping N, Zhang H, Meng L, Zeng Y. Insight into the halogen-bonding interactions in the C6F5X···ZH3 (X = Cl, Br, I; Z = N, P, As) and C6F5I···Z (Ph)3 (Z = N, P, As) complexes. Struct Chem 2020. [DOI: 10.1007/s11224-020-01656-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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47
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Østrøm I, Ortolan AO, Caramori GF, Mascal M, Muñoz‐Castro A, Parreira RLT. In Silico
Design of Cylindrophanes: The Role of Functional Groups in a Fluoride Selective Host. Chemphyschem 2020; 21:1989-2005. [DOI: 10.1002/cphc.202000321] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Revised: 06/23/2020] [Indexed: 12/12/2022]
Affiliation(s)
- Ina Østrøm
- Departamento de Química Universidade Federal de Santa Catarina Campus Universitário Trindade, CP 476 Florianópolis SC, 88040-900 Brazil
| | - Alexandre O. Ortolan
- Departamento de Química Universidade Federal de Santa Catarina Campus Universitário Trindade, CP 476 Florianópolis SC, 88040-900 Brazil
| | - Giovanni F. Caramori
- Departamento de Química Universidade Federal de Santa Catarina Campus Universitário Trindade, CP 476 Florianópolis SC, 88040-900 Brazil
| | - Mark Mascal
- Department of Chemistry University of California Davis 1 Shields Avenue Davis CA 95616 USA
| | - Alvaro Muñoz‐Castro
- Laboratorio de Química Inorgánica y Materiales Moleculares, Facultad de Ingeniería Universidad Autonoma de Chile Llano Subercaseaux 2801 San Miguel, Santiago Chile
| | - Renato L. T. Parreira
- Núcleo de Pesquisas em Ciências Exatas e Tecnológicas Universidade de Franca 14404-600 Franca, SP Brazil
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Campetella M, De Mitri N, Prampolini G. Automated parameterization of quantum-mechanically derived force-fields including explicit sigma holes: A pathway to energetic and structural features of halogen bonds in gas and condensed phase. J Chem Phys 2020; 153:044106. [PMID: 32752684 DOI: 10.1063/5.0014280] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022] Open
Abstract
In classical molecular dynamics, general purpose atomistic force-fields (FFs) often deliver inaccurate results when dealing with halogen bonds (XBs), notwithstanding their crucial role in many fields of science, ranging from material design to drug development. Given the large dimensions of the systems of interest, it would be therefore desirable to increase the FF accuracy maintaining the simplicity of the standard Lennard-Jones (LJ) plus point charge description to avoid an excessive computational cost. A simple yet effective strategy consists in introducing a number of virtual sites able to mimic the so-called "explicit σ-hole." In this work, we present an automated FF parameterization strategy based on a global optimization of both LJ and charge parameters with respect to accurate quantum mechanical data, purposely computed for the system under investigation. As a test case, we report on two homologue series, characterized either by weak or strong XBs, namely, the di-halogenated methanes and the mono-, di-, and tri-substituted acetonitriles, taking into consideration Cl, Br, and I substituents. The resulting quantum mechanically derived FFs are validated for each compound in the gas and in the condensed phase by comparing them to general purpose and specific FFs without virtual sites and to highly accurate reference quantum mechanical data. The results strongly support the adoption of the specific FFs with virtual sites, which overcome the other investigated models in representing both gas phase energetics and the structural patterns of the liquid phase structure related to the presence of XBs.
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Affiliation(s)
- Marco Campetella
- Institut des Nanosciences de Paris, Sorbonne Université, CNRS, UMR7588, F-75252 Paris, France
| | - Nicola De Mitri
- Enthought Ltd., Broers Building, 21 JJ Thomson Avenue, Cambridge CB3 0FA, United Kingdom
| | - Giacomo Prampolini
- Istituto di Chimica dei Composti Organo Metallici (ICCOM), CNR Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
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49
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Piezoelectric Energy Harvesting from a Ferroelectric Hybrid Salt [Ph
3
MeP]
4
[Ni(NCS)
6
] Embedded in a Polymer Matrix. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202001250] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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50
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Structural Characterization, DFT Calculation, NCI, Scan-Rate Analysis and Antifungal Activity against Botrytis cinerea of ( E)-2-{[(2-Aminopyridin-2-yl)imino]-methyl}-4,6-di- tert-butylphenol (Pyridine Schiff Base). MOLECULES (BASEL, SWITZERLAND) 2020; 25:molecules25122741. [PMID: 32545715 PMCID: PMC7357110 DOI: 10.3390/molecules25122741] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 05/30/2020] [Accepted: 06/01/2020] [Indexed: 12/12/2022]
Abstract
Botrytis cinerea is a ubiquitous necrotrophic filamentous fungal phytopathogen that lacks host specificity and can affect more than 1000 different plant species. In this work, we explored L1 [(E)-2-{[(2-aminopyridin-2-yl)imino]-methyl}-4,6-di-tert-butylphenol], a pyridine Schiff base harboring an intramolecular bond (IHB), regarding their antifungal activity against Botrytis cinerea. Moreover, we present a full characterization of the L1 by NMR and powder diffraction, as well as UV–vis, in the presence of previously untested different organic solvents. Complementary time-dependent density functional theory (TD-DFT) calculations were performed, and the noncovalent interaction (NCI) index was determined. Moreover, we obtained a scan-rate study on cyclic voltammetry of L1. Finally, we tested the antifungal activity of L1 against two strains of Botrytis cinerea (B05.10, a standard laboratory strain; and A1, a wild type strains isolated from Chilean blueberries). We found that L1 acts as an efficient antifungal agent against Botrytis cinerea at 26 °C, even better than the commercial antifungal agent fenhexamid. Although the antifungal activity was also observed at 4 °C, the effect was less pronounced. These results show the high versatility of this kind of pyridine Schiff bases in biological applications.
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