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Joseph JP, Miglani C, Maulik A, Abraham SR, Dutta A, Baev A, Prasad PN, Pal A. Stereoselective Plasmonic Interaction in Peptide-tethered Photopolymerizable Diacetylenes Doped with Chiral Gold Nanoparticles. Angew Chem Int Ed Engl 2023; 62:e202306751. [PMID: 37483166 DOI: 10.1002/anie.202306751] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Revised: 07/16/2023] [Accepted: 07/21/2023] [Indexed: 07/25/2023]
Abstract
Designing polymeric systems with ultra-high optical activity is instrumental in the pursuit of smart artificial chiroptical materials, including the fundamental understanding of structure/property relations. Herein, we report a diacetylene (DA) moiety flanked by chiral D- and L-FF dipeptide methyl esters that exhibits efficient topochemical photopolymerization in the solid phase to furnish polydiacetylene (PDA) with desired control over the chiroptical properties. The doping of the achiral gold nanoparticles provides plasmonic interaction with the PDAs to render asymmetric shape to the circular dichroism bands. With the judicious design of the chiral amino acid ligand appended to the AuNPs, we demonstrate the first example of selective chiral amplification mediated by stereo-structural matching of the polymer-plasmonic AuNP hybrid pairs. Such ordered self-assembly aided by topochemical polymerization in peptide-tethered PDA provides a smart strategy to produce soft responsive materials for applications in chiral photonics.
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Affiliation(s)
- Jojo P Joseph
- Department of Chemistry and The Institute for Lasers, Photonics and Biophotonics, University at Buffalo (SUNY), 14260, Buffalo, NY, USA
| | - Chirag Miglani
- Chemical Biology Unit, Institute of Nano Science and Technology, Sector 81, 140306, Mohali, Punjab, India
| | - Antarlina Maulik
- Chemical Biology Unit, Institute of Nano Science and Technology, Sector 81, 140306, Mohali, Punjab, India
| | - Shema R Abraham
- Department of Chemical and Biological Engineering, University at Buffalo (SUNY), 14260, Buffalo, NY, USA
| | - Avisek Dutta
- Department of Chemistry and The Institute for Lasers, Photonics and Biophotonics, University at Buffalo (SUNY), 14260, Buffalo, NY, USA
| | - Alexander Baev
- Department of Chemistry and The Institute for Lasers, Photonics and Biophotonics, University at Buffalo (SUNY), 14260, Buffalo, NY, USA
| | - Paras N Prasad
- Department of Chemistry and The Institute for Lasers, Photonics and Biophotonics, University at Buffalo (SUNY), 14260, Buffalo, NY, USA
| | - Asish Pal
- Chemical Biology Unit, Institute of Nano Science and Technology, Sector 81, 140306, Mohali, Punjab, India
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2
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Kuila S, Singh AK, Shrivastava A, Dey S, Singha T, Roy L, Satpati B, Nanda J. Probing Molecular Chirality on the Self-Assembly and Gelation of Naphthalimide-Conjugated Dipeptides. J Phys Chem B 2023. [PMID: 37196104 DOI: 10.1021/acs.jpcb.3c01273] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
In this work, 1,8-naphthalimide (NMI)-conjugated three hybrid dipeptides constituted of a β-amino acid and an α-amino acid have been designed, synthesized, and purified. Here, in the design, the chirality of the α-amino acid was varied to study the effect of molecular chirality on the supramolecular assembly. Self-assembly and gelation of three NMI conjugates were studied in mixed solvent systems [water and dimethyl sulphoxide (DMSO)]. Interestingly, chiral NMI derivatives [NMI-βAla-lVal-OMe (NLV) and NMI-βAla-dVal-OMe (NDV)] formed self-supported gels, while the achiral NMI derivative [NMI-βAla-Aib-OMe, (NAA)] failed to form any kind of gel at 1 mM concentration and in a mixed solvent (70% water in DMSO medium). Self-assembly processes were thoroughly investigated using UV-vis spectroscopy, nuclear magnetic resonance (NMR), fluorescence, and circular dichroism (CD) spectroscopy. A J-type molecular assembly was observed in the mixed solvent system. The CD study indicated the formation of chiral assembled structures for NLV and NDV, which were mirror images of one another, and the self-assembled state by NAA was CD-silent. The nanoscale morphology of the three derivatives was studied using scanning electron microscopy (SEM). In the case of NLV and NDV, left- and right-handed fibrilar morphologies were observed, respectively. In contrast, a flake-like morphology was noticed for NAA. The DFT study indicated that the chirality of the α-amino acid influenced the orientation of π-π stacking interactions of naphthalimide units in the self-assembled structure that in turn regulated the helicity. This is a unique work where molecular chirality controls the nanoscale assembly as well as the macroscopic self-assembled state.
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Affiliation(s)
- Soumen Kuila
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
| | - Ajeet Kumar Singh
- Institute of Chemical Technology Mumbai-IOC Odisha Campus Bhubaneswar, IIT Kharagpur Extension Centre, Bhubaneswar 751013, India
| | - Akash Shrivastava
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
| | - Sukantha Dey
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
| | - Tukai Singha
- Saha Institute of Nuclear Physics, 1/AF Bidhannagar, Kolkata 700064, West Bengal, India
| | - Lisa Roy
- Institute of Chemical Technology Mumbai-IOC Odisha Campus Bhubaneswar, IIT Kharagpur Extension Centre, Bhubaneswar 751013, India
| | - Biswarup Satpati
- Saha Institute of Nuclear Physics, 1/AF Bidhannagar, Kolkata 700064, West Bengal, India
| | - Jayanta Nanda
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
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3
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Misra S, Singh P, Singh AK, Roy L, Kuila S, Dey S, Mahapatra AK, Nanda J. Tuning of the Supramolecular Helicity of Peptide-Based Gel Nanofibers. J Phys Chem B 2022; 126:10882-10892. [PMID: 36516185 DOI: 10.1021/acs.jpcb.2c06897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Helical supramolecular architectures play important structural and functional roles in biological systems. The helicity of synthetic molecules can be tuned mainly by the chiral manipulation of the system. However, tuning of helicity by the achiral unit of the molecules is less studied. In this work, the helicity of naphthalimide-capped peptide-based gel nanofibers is tuned by the alteration of methylene units present in the achiral amino acid. The inversion of supramolecular helicity has been extensively studied by CD spectroscopy and morphological analysis. The density functional theory (DFT) study indicates that methylene spacers influence the orientation of π-π stacking interactions of naphthalimide units in the self-assembled structure that regulates the helicity. This work illustrates a new approach to tuning the supramolecular chirality of self-assembled biomaterials.
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Affiliation(s)
- Souvik Misra
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India.,Department of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, P.O. Botanic Garden, Howrah 711103, West Bengal, India
| | - Pijush Singh
- Department of Biochemistry and Biophysics, University of Kalyani, Kalyani 741235, West Bengal, India
| | - Ajeet Kumar Singh
- Institute of Chemical Technology Mumbai - IOC Odisha Campus Bhubaneswar, IIT Kharagpur Extension Centre, Bhubaneswar 751013, India
| | - Lisa Roy
- Institute of Chemical Technology Mumbai - IOC Odisha Campus Bhubaneswar, IIT Kharagpur Extension Centre, Bhubaneswar 751013, India
| | - Soumen Kuila
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
| | - Sukantha Dey
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
| | - Ajit K Mahapatra
- Department of Chemistry, Indian Institute of Engineering Science and Technology, Shibpur, P.O. Botanic Garden, Howrah 711103, West Bengal, India
| | - Jayanta Nanda
- Department of Chemistry, University of North Bengal, Raja Rammohanpur, Siliguri 734013, West Bengal, India
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4
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Ferguson AL, Tovar JD. Evolution of π-Peptide Self-Assembly: From Understanding to Prediction and Control. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:15463-15475. [PMID: 36475709 DOI: 10.1021/acs.langmuir.2c02399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
Supramolecular materials derived from the self-assembly of engineered molecules continue to garner tremendous scientific and technological interest. Recent innovations include the realization of nano- and mesoscale particles (0D), rods and fibrils (1D), sheets (2D), and even extended lattices (3D). Our research groups have focused attention over the past 15 years on one particular class of supramolecular materials derived from oligopeptides with embedded π-electron units, where the oligopeptides can be viewed as substituents or side chains to direct the assembly of the central π-electron cores. Upon assembly, the π-systems are driven into close cofacial architectures that facilitate a variety of energy migration processes within the nanomaterial volume, including exciton transport, voltage transmission, and photoinduced electron transfer. Like many practitioners of supramolecular materials science, many of our initial molecular designs were designed with substantial inspiration from biologically occurring self-assembly coupled with input from chemical intuition and molecular modeling and simulation. In this feature article, we summarize our current understanding of the π-peptide self-assembly process as documented through our body of publications in this area. We address fundamental spectroscopic and computational tools used to extract information regarding the internal structures and energetics of the π-peptide assemblies, and we address the current state of the art in terms of recent applications of data science tools in conjunction with high-throughput computational screening and experimental assays to guide the efficient traversal of the π-peptide molecular design space. The abstract image details our integrated program of chemical synthesis, spectroscopic and functional characterization, multiscale simulation, and machine learning which has advanced the understanding and control of the assembly of synthetic π-conjugated peptides into supramolecular nanostructures with energy and biomedical applications.
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Affiliation(s)
- Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218 United States
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5
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Le X, Gao T, Wang L, Wei F, Chen C, Zhao Y. Self-Assembly of Short Amphiphilic Peptides and Their Biomedical Applications. Curr Pharm Des 2022; 28:3546-3562. [PMID: 36424793 DOI: 10.2174/1381612829666221124103526] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 10/22/2022] [Accepted: 11/01/2022] [Indexed: 11/26/2022]
Abstract
A series of functional biomaterials with different sizes and morphologies can be constructed through self-assembly, among which amphiphilic peptide-based materials have received intense attention. One main possible reason is that the short amphiphilic peptides can facilitate the formation of versatile materials and promote their further applications in different fields. Another reason is that the simple structure of amphiphilic peptides can help establish the structure-function relationship. This review highlights the recent advances in the self-assembly of two typical peptide species, surfactant-like peptides (SLPs) and peptides amphiphiles (PAs). These peptides can self-assemble into diverse nanostructures. The formation of these different nanostructures resulted from the delicate balance of varied non-covalent interactions. This review embraced each non-covalent interaction and then listed the typical routes for regulating these non-covalent interactions, then realized the morphologies modulation of the self-assemblies. Finally, their applications in some biomedical fields, such as the stabilization of membrane proteins, templating for nanofabrication and biomineralization, acting as the antibacterial and antitumor agents, hemostasis, and synthesis of melanin have been summarized. Further advances in the self-assembly of SLPs and PAs may focus on the design of functional materials with targeted properties and exploring their improved properties.
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Affiliation(s)
- Xiaosong Le
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao266580, China
| | - Tianwen Gao
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao266580, China
| | - Li Wang
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao266580, China
| | - Feng Wei
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao266580, China
| | - Cuixia Chen
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao266580, China
| | - Yurong Zhao
- State Key Laboratory of Heavy Oil Processing and the Centre for Bioengineering and Biotechnology, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao266580, China
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6
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Chen M, Wang H, Li E, Li X, Shi T. Hierarchically supramolecular polymerization of anthraquinone dye to chiral aggregates via 2D-monolayered nanosheets: the unanticipated role of pathway complexity. NANOSCALE 2022; 14:14052-14056. [PMID: 36134624 DOI: 10.1039/d2nr04404h] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
An anthraquinone dye underwent supramolecular polymerization, affording 2D-monolayered nanosheets in a kinetically controlled state. The nanosheets then transformed into hierarchically chiral aggregates in a thermodynamically controlled step. The unanticipated role played by pathway complexity was clearly unravelled in this work, highlighting the diversified pathways in the supramolecular polymerization of various building blocks.
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Affiliation(s)
- Mingyue Chen
- College of Chemistry, Chemical Engineering and Materials Science, Zaozhuang University, Zaozhuang 277160, Shandong Prov., China.
| | - Houchen Wang
- College of Chemistry, Chemical Engineering and Materials Science, Zaozhuang University, Zaozhuang 277160, Shandong Prov., China.
| | - Enhui Li
- College of Chemistry, Chemical Engineering and Materials Science, Zaozhuang University, Zaozhuang 277160, Shandong Prov., China.
| | - Xueru Li
- College of Chemistry, Chemical Engineering and Materials Science, Zaozhuang University, Zaozhuang 277160, Shandong Prov., China.
| | - Tiesheng Shi
- College of Chemistry, Chemical Engineering and Materials Science, Zaozhuang University, Zaozhuang 277160, Shandong Prov., China.
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7
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Peressotti S, Koehl GE, Goding JA, Green RA. Self-Assembling Hydrogel Structures for Neural Tissue Repair. ACS Biomater Sci Eng 2021; 7:4136-4163. [PMID: 33780230 PMCID: PMC8441975 DOI: 10.1021/acsbiomaterials.1c00030] [Citation(s) in RCA: 47] [Impact Index Per Article: 15.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2021] [Accepted: 03/10/2021] [Indexed: 12/12/2022]
Abstract
Hydrogel materials have been employed as biological scaffolds for tissue regeneration across a wide range of applications. Their versatility and biomimetic properties make them an optimal choice for treating the complex and delicate milieu of neural tissue damage. Aside from finely tailored hydrogel properties, which aim to mimic healthy physiological tissue, a minimally invasive delivery method is essential to prevent off-target and surgery-related complications. The specific class of injectable hydrogels termed self-assembling peptides (SAPs), provide an ideal combination of in situ polymerization combined with versatility for biofunctionlization, tunable physicochemical properties, and high cytocompatibility. This review identifies design criteria for neural scaffolds based upon key cellular interactions with the neural extracellular matrix (ECM), with emphasis on aspects that are reproducible in a biomaterial environment. Examples of the most recent SAPs and modification methods are presented, with a focus on biological, mechanical, and topographical cues. Furthermore, SAP electrical properties and methods to provide appropriate electrical and electrochemical cues are widely discussed, in light of the endogenous electrical activity of neural tissue as well as the clinical effectiveness of stimulation treatments. Recent applications of SAP materials in neural repair and electrical stimulation therapies are highlighted, identifying research gaps in the field of hydrogels for neural regeneration.
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Affiliation(s)
- Sofia Peressotti
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
| | - Gillian E. Koehl
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
| | - Josef A. Goding
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
| | - Rylie A. Green
- Department
of Bioengineering and Centre for Neurotechnology, Imperial College London, London SW72AS, United Kingdom
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8
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Wei D, Yu Y, Ge L, Wang Z, Chen C, Guo R. Chiral Supramolecular Polymers Assembled by Amphiphilic Oligopeptide-Perylene Diimides and High Electrochemical Sensing. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:9232-9243. [PMID: 34308642 DOI: 10.1021/acs.langmuir.1c01430] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Various secondary structures, for example, β-sheet hydrogen bonds formed by oligopeptides exhibiting high directionality and selectivity provide a new avenue to regulate optoelectronic performances of supramolecular assemblies constructed by π-conjugated chromophores. In this work, oligopeptide-perylene diimides (AUPDIs) are synthesized to generate β-sheet strands which guide the formation of chiral supramolecular polymers with a diversity of morphologies in combination with the π-π stacking even in aqueous media. Complex morphology transitions are successfully controlled by simply adjusting the water volume fraction in the binary solvent of water and tetrahydrofuran from spherical hollow aggregates to long helical nanowires and to short nanofibers. The mechanism of the assembly changes from cooperative to the isodesmic model relying on AUPDI concentrations. This originates from the transformation in the β-sheet that regulates profoundly the arrangement of the AUPDI molecules. Prominently efficient and positive electronic sensing to triethylamine for highly helical nanowires engenders due to the highly ordered helical arrangement within the nanowires, fourfold of the short nanofibers.
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Affiliation(s)
- Duo Wei
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
- Testing Center, Yangzhou University, Yangzhou 225009, China
| | - Yaozheng Yu
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
| | - Lingling Ge
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
| | - Zhifeng Wang
- Testing Center, Yangzhou University, Yangzhou 225009, China
| | - Chong Chen
- Testing Center, Yangzhou University, Yangzhou 225009, China
| | - Rong Guo
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
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9
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Panda SS, Shmilovich K, Herringer NSM, Marin N, Ferguson AL, Tovar JD. Computationally Guided Tuning of Peptide-Conjugated Perylene Diimide Self-Assembly. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:8594-8606. [PMID: 34213333 DOI: 10.1021/acs.langmuir.1c01213] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Peptide-π-conjugated materials are important for biointerfacing charge-transporting applications due to their aqueous compatibility and formation of long-range π-electron networks. Perylene diimides (PDIs), well-established charge-transporting π systems, can self-assemble in aqueous solutions when conjugated with amino acids. In this work, we leveraged computational guidance from our previous work to access two different self-assembled architectures from PDI-amino acid conjugates. Furthermore, we expanded the design rule to other sequences to learn that the closest amino acids to the π core have a significant effect on the photophysical properties of the resulting assemblies. By simply altering glycine to alanine at the closest residue position, we observed significantly different electronic properties as revealed through UV-vis, photoluminescence, and circular dichroism spectroscopies. Accompanying molecular dynamics simulations revealed two distinct types of self-assembled architectures: cofacial structures when the smaller glycine residue is at the closest residue position to the π core versus rotationally shifted structures when glycine is substituted for the larger alanine. This study illustrates the use of tandem computations and experiments to unearth and understand new design rules for supramolecular materials and exposes a modest amino acid substitution as a means to predictably modulate the supramolecular organization and engineer the photophysical properties of π-conjugated peptidic materials.
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Affiliation(s)
- Sayak Subhra Panda
- Department of Chemistry, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Nicholas S M Herringer
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Nicolas Marin
- Department of Chemistry, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
- Department of Materials Science and Engineering, Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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10
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Wang M, Zhao Y, Zhang L, Deng J, Qi K, Zhou P, Ma X, Wang D, Li Z, Wang J, Yang J, Lu JR, Zhang J, Xu H. Unexpected Role of Achiral Glycine in Determining the Suprastructural Handedness of Peptide Nanofibrils. ACS NANO 2021; 15:10328-10341. [PMID: 34047551 DOI: 10.1021/acsnano.1c02547] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Helical supramolecular architectures play important structural and functional roles in biological systems. Although their occurrence is widely perceived to correlate to fundamental chiral units including l-amino acids and d-sugars, the detailed relationship between molecular and supramolecular handedness is still unclear. At the same time, although achiral units are practically always in close proximity to chiral ones by covalent linkage along a polymeric chain, their effect on supramolecular handedness has received relatively less attention. Here, we designed a set of short amphiphilic peptides, in which an achiral glycine residue was incorporated at the interface between the hydrophobic and hydrophilic segments. We observed that glycine incorporation caused dramatic variations in suprastructural handedness in self-assembled peptide nanofibrils, and the effect of the hydrophilic charged residue at the C-terminus on supramolecular handedness was demolished, leading to chiral truncation. Furthermore, molecular dynamics simulations and quantum chemistry calculations revealed that the unanticipated role of the glycine residue in regulating supramolecular handedness originated from its effect on the conformational preference of single β-strands. Importantly, reduced density gradient analyses on single β-strands indicated that, due to the lack of a side chain in glycine, intricate noncovalent interactions were produced among the neighboring amino acid side chains of the incorporated glycine and its local backbone, resulting in diverse β-strand conformations.
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Affiliation(s)
- Muhan Wang
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
- Department of Civil Engineering, Qingdao University of Technology, 11 Fushun Road, Qingdao 266033, China
| | - Yurong Zhao
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Limin Zhang
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Jing Deng
- National Center for Magnetic Resonance in Wuhan, Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Kai Qi
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Peng Zhou
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Xiaoyue Ma
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Dong Wang
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Zhen Li
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Jiqian Wang
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Jun Yang
- National Center for Magnetic Resonance in Wuhan, Key Laboratory of Magnetic Resonance in Biological Systems, State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, China
| | - Jian R Lu
- Biological Physics Group, Department of Physics and Astronomy, The University of Manchester, Manchester M13 9PL, United Kingdom
| | - Jun Zhang
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
| | - Hai Xu
- State Key Laboratory of Heavy Oil Processing and School of Materials Science and Engineering, China University of Petroleum (East China), 66 Changjiang West Road, Qingdao 266580, China
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11
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Tian T, Wei D, Ge L, Wang Z, Chen C, Guo R. Hierarchical self-assemblies of carnosine asymmetrically functioned perylene diimide with high optoelectronic response. J Colloid Interface Sci 2021; 601:746-757. [PMID: 34098449 DOI: 10.1016/j.jcis.2021.05.168] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2021] [Revised: 05/26/2021] [Accepted: 05/27/2021] [Indexed: 01/29/2023]
Abstract
HYPOTHESIS Taking advantage of photoinduced electron transfer, one dimensional organic nanomaterials with tunable donor-acceptor (D-A) interface provide a promising avenue to get high optoelectric properties. However, strong charge transfer interaction between D and A segments impedes the formation of long-range ordered structure, which limits the charge transport through efficient π electronic delocalization. Incorporation of chiral peptide offering various hydrogen bonding (H-bonding) along with asymmetric molecular structure enables substantially controllable D-A interface and tunable organization of the π-conjugates. EXPERIMENTS A new amphiphilic perylene diimide (CUPDI) with PDI as an acceptor is designed and synthesized. A polar chiral dipeptide composed of β-alanine and l-histidine with the imidazole ring as the donor i.e., l-carnosine, is incorporated at one of imides. Transition of various supramolecular assemblies of CUPDI is realized by changing CUPDI concentration and solvents. The photoelectronic properties of the assemblies are investigated as well as their association with the microstructure of the nanomaterials. FINDINGS Delicately tuned hydrogen bonds between the peptides and π-π interaction between PDI cores in different solvents enable the formation of assemblies with multifarious microstructures such as small spherical aggregates, nanowires with uniform diameter, nanobelts, and irregular aggregates. The maximum amount of photocurrent enhancement is up to 1.08 µA observed for the nanobelt, four times higher than that of irregular aggregates. However, the nanowires show the best performance of 7.1-fold in response to ammonia. Thus, the photoelectric performances are strongly dependent on the the molecular arrangement within the nanomaterials.
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Affiliation(s)
- Tian Tian
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
| | - Duo Wei
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China; Testing Center, Yangzhou University, Yangzhou 225009, China.
| | - Lingling Ge
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China
| | - Zhifeng Wang
- Testing Center, Yangzhou University, Yangzhou 225009, China
| | - Chong Chen
- Testing Center, Yangzhou University, Yangzhou 225009, China
| | - Rong Guo
- School of Chemistry and Chemical Engineering, Yangzhou University, Yangzhou 225009, China.
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Jiang H, Jiang L, Zhang P, Zhang X, Ma N, Wei H. Force-Induced Self-Assembly of Supramolecular Modified Mica Nanosheets for Ductile and Heat-Resistant Mica Papers. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:5131-5138. [PMID: 33882231 DOI: 10.1021/acs.langmuir.1c00001] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Mica is a naturally abundant layered silicate mineral that has higher strength than other layered silicate minerals, but its inherent brittleness limits its application in some fields. In this work, mica was ultrasonically exfoliated into a single-layered nanomaterial after thermal activation, acidification, sodium replacement, and cetyltrimethylammonium bromide (CTAB) intercalation and then modified with ureido-pyrimidinone (UPy)-based PEG chains. Vacuum-assisted self-assembly was used to construct supramolecularly modified single-layered mica into bulk materials, in which the mica nanosheets were stacked into mica paper. The reversible quadruple hydrogen-bonded UPy moieties provided a high binding constant and significantly improved the strength and toughness of the obtained mica paper. These force-induced assembled mica papers showed significantly improved tensile strength and toughness compared with pure mica paper and simultaneously maintained the heat resistance of the mica materials, which may be good candidates for the substrates of flexible sensors working at higher temperatures.
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Affiliation(s)
- Hongkun Jiang
- College of Materials Science and Chemical Engineering, Harbin Engineering University, Harbin 150001, China
| | - Lei Jiang
- College of Materials Science and Chemical Engineering, Harbin Engineering University, Harbin 150001, China
| | - Peng Zhang
- College of Materials Science and Chemical Engineering, Harbin Engineering University, Harbin 150001, China
| | - Xinyue Zhang
- College of Materials Science and Chemical Engineering, Harbin Engineering University, Harbin 150001, China
| | - Ning Ma
- College of Materials Science and Chemical Engineering, Harbin Engineering University, Harbin 150001, China
| | - Hao Wei
- College of Materials Science and Chemical Engineering, Harbin Engineering University, Harbin 150001, China
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13
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Özen B, Fadaei Tirani F, Schenk K, Lin KH, Scopelliti R, Corminboeuf C, Frauenrath H. Structure-Property Relationships in Bithiophenes with Hydrogen-Bonded Substituents. Chemistry 2021; 27:3348-3360. [PMID: 32894599 DOI: 10.1002/chem.202003113] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 08/24/2020] [Indexed: 11/10/2022]
Abstract
The use of crystal engineering to control the supramolecular arrangement of π-conjugated molecules in the solid-state is of considerable interest for the development of novel organic electronic materials. In this study, we investigated the effect of combining of two types of supramolecular interaction with different geometric requirements, amide hydrogen bonding and π-interactions, on the π-overlap between calamitic π-conjugated cores. To this end, we prepared two series of bithiophene diesters and diamides with methylene, ethylene, or propylene spacers between the bithiophene core and the functional groups in their terminal substituents. The hydrogen-bonded bithiophene diamides showed significantly denser packing of the bithiophene cores than the diesters and other known α,ω-disubstituted bithiophenes. The bithiophene packing density reach a maximum in the bithiophene diamide with an ethylene spacer, which had the smallest longitudinal bithiophene displacement and infinite 1D arrays of electronically conjugated, parallel, and almost linear N-H⋅⋅⋅O=C hydrogen bonds. The synergistic hydrogen bonding and π-interactions were attributed to the favorable conformation mechanics of the ethylene spacer and resulted in H-type spectroscopic aggregates in solid-state absorption spectroscopy. These results demonstrate that the optoelectronic properties of π-conjugated materials in the solid-state may be tailored systematically by side-chain engineering, and hence that this approach has significant potential for the design of organic and polymer semiconductors.
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Affiliation(s)
- Bilal Özen
- École Polytechnique Fédérale de Lausanne (EPFL), Institute of Materials, Laboratory of Macromolecular and Organic Materials, EPFL-STI-IMX-LMOM, MXG 037, Station 12, 1015, Lausanne, Switzerland
| | - Farzaneh Fadaei Tirani
- BCH 2111, Batochime UNIL, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Avenue Forel 2, 1015, Lausanne, Switzerland
| | - Kurt Schenk
- Institute of Physics, PH L1 500, Station 3, École Polytechnique Fédérale de Lausanne (EPFL), 1015, Lausanne, Switzerland
| | - Kun-Han Lin
- BCH 5312, Batochime UNIL, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Avenue Forel 2, 1015, Lausanne, Switzerland
| | - Rosario Scopelliti
- BCH 2111, Batochime UNIL, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Avenue Forel 2, 1015, Lausanne, Switzerland
| | - Clémence Corminboeuf
- BCH 5312, Batochime UNIL, Institute of Chemical Sciences and Engineering, École Polytechnique Fédérale de Lausanne (EPFL), Avenue Forel 2, 1015, Lausanne, Switzerland
| | - Holger Frauenrath
- École Polytechnique Fédérale de Lausanne (EPFL), Institute of Materials, Laboratory of Macromolecular and Organic Materials, EPFL-STI-IMX-LMOM, MXG 037, Station 12, 1015, Lausanne, Switzerland
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14
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Zaboli M, Saeidnia F, Zaboli M, Torkzadeh-Mahani M. Stabilization of recombinant d-Lactate dehydrogenase enzyme with trehalose: Response surface methodology and molecular dynamics simulation study. Process Biochem 2021. [DOI: 10.1016/j.procbio.2020.11.001] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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15
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Panda SS, Shmilovich K, Ferguson AL, Tovar JD. Computationally Guided Tuning of Amino Acid Configuration Influences the Chiroptical Properties of Supramolecular Peptide-π-Peptide Nanostructures. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:6782-6792. [PMID: 32491857 DOI: 10.1021/acs.langmuir.0c00961] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Self-assembled supramolecular materials derived from peptidic macromolecules with π-conjugated building blocks are of enormous interest because of their aqueous solubility and biocompatibility. The design rules to achieve tailored optoelectronic properties from these types of materials can be guided by computation and virtual screening rather than intuition-based experimental trial-and-error. Using machine learning, we reported previously that the supramolecular chirality in self-assembled aggregates from VEVAG-π-GAVEV type peptidic materials was most strongly influenced by hydrogen bonding and hydrophobic packing of the alanine and valine residues. Herein, we build upon this idea to demonstrate through molecular-level experimental characterization and all-atom molecular modeling that varying the stereogenic centers of these residues has a profound impact on the optoelectronic properties of the supramolecular aggregates, whereas the variation of stereogenic centers of other residues has only nominal influence on these properties. This study highlights the synergy between computational and experimental insight relevant to the control of chiroptical or other electronic properties associated with supramolecular materials.
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Affiliation(s)
| | - Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, 5640 South Ellis Avenue, Chicago, Illinois 60637, United States
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16
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Gupta S, Singh I, Sharma AK, Kumar P. Ultrashort Peptide Self-Assembly: Front-Runners to Transport Drug and Gene Cargos. Front Bioeng Biotechnol 2020; 8:504. [PMID: 32548101 PMCID: PMC7273840 DOI: 10.3389/fbioe.2020.00504] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2020] [Accepted: 04/29/2020] [Indexed: 12/18/2022] Open
Abstract
The translational therapies to promote interaction between cell and signal come with stringent eligibility criteria. The chemically defined, hierarchically organized, and simpler yet blessed with robust intermolecular association, the peptides, are privileged to make the cut-off for sensing the cell-signal for biologics delivery and tissue engineering. The signature service and insoluble network formation of the peptide self-assemblies as hydrogels have drawn a spell of research activity among the scientists all around the globe in the past decades. The therapeutic peptide market players are anticipating promising growth opportunities due to the ample technological advancements in this field. The presence of the other organic moieties, enzyme substrates and well-established protecting groups like Fmoc and Boc etc., bring the best of both worlds. Since the large sequences of peptides severely limit the purification and their isolation, this article reviews the account of last 5 years' efforts on novel approaches for formulation and development of single molecule amino acids, ultra-short peptide self-assemblies (di- and tri- peptides only) and their derivatives as drug/gene carriers and tissue-engineering systems.
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Affiliation(s)
- Seema Gupta
- Chemistry Department, Acharya Narendra Dev College, University of Delhi, New Delhi, India
| | - Indu Singh
- Chemistry Department, Acharya Narendra Dev College, University of Delhi, New Delhi, India
- Nucleic Acids Research Laboratory, CSIR-Institute of Genomics and Integrative Biology, New Delhi, India
| | - Ashwani K. Sharma
- Nucleic Acids Research Laboratory, CSIR-Institute of Genomics and Integrative Biology, New Delhi, India
| | - Pradeep Kumar
- Nucleic Acids Research Laboratory, CSIR-Institute of Genomics and Integrative Biology, New Delhi, India
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Shmilovich K, Mansbach RA, Sidky H, Dunne OE, Panda SS, Tovar JD, Ferguson AL. Discovery of Self-Assembling π-Conjugated Peptides by Active Learning-Directed Coarse-Grained Molecular Simulation. J Phys Chem B 2020; 124:3873-3891. [PMID: 32180410 DOI: 10.1021/acs.jpcb.0c00708] [Citation(s) in RCA: 54] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Electronically active organic molecules have demonstrated great promise as novel soft materials for energy harvesting and transport. Self-assembled nanoaggregates formed from π-conjugated oligopeptides composed of an aromatic core flanked by oligopeptide wings offer emergent optoelectronic properties within a water-soluble and biocompatible substrate. Nanoaggregate properties can be controlled by tuning core chemistry and peptide composition, but the sequence-structure-function relations remain poorly characterized. In this work, we employ coarse-grained molecular dynamics simulations within an active learning protocol employing deep representational learning and Bayesian optimization to efficiently identify molecules capable of assembling pseudo-1D nanoaggregates with good stacking of the electronically active π-cores. We consider the DXXX-OPV3-XXXD oligopeptide family, where D is an Asp residue and OPV3 is an oligophenylenevinylene oligomer (1,4-distyrylbenzene), to identify the top performing XXX tripeptides within all 203 = 8000 possible sequences. By direct simulation of only 2.3% of this space, we identify molecules predicted to exhibit superior assembly relative to those reported in prior work. Spectral clustering of the top candidates reveals new design rules governing assembly. This work establishes new understanding of DXXX-OPV3-XXXD assembly, identifies promising new candidates for experimental testing, and presents a computational design platform that can be generically extended to other peptide-based and peptide-like systems.
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Affiliation(s)
- Kirill Shmilovich
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Rachael A Mansbach
- Theoretical Biology and Biophysics Group, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Hythem Sidky
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Olivia E Dunne
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
| | - Sayak Subhra Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States.,Institute of NanoBioTechnology, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - John D Tovar
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States.,Institute of NanoBioTechnology, Johns Hopkins University, Baltimore, Maryland 21218, United States.,Department of Materials Science and Engineering, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Andrew L Ferguson
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
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Lee T, Panda SS, Tovar JD, Katz HE. Unusually Conductive Organic-Inorganic Hybrid Nanostructures Derived from Bio-Inspired Mineralization of Peptide/Pi-Electron Assemblies. ACS NANO 2020; 14:1846-1855. [PMID: 31999098 DOI: 10.1021/acsnano.9b07911] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Supramolecular materials derived from pi-conjugated peptidic macromolecules are well-established to self-assemble into 1D nanostructures. In the presence of KOH, which was used to more fully dissolve the peptide macromolecules prior to triggering the self-assembly by way of exposure to HCl vapor, we report here an unexpected mineralization of KCl as templated presumably by the glutamic acid residues that were present along the backbone of the peptide macromolecules. In order to decouple the peptidic side chains from the central pi-electron unit, three-carbon spacers were added between them on both sides. The assembled structures that resulted from the collective formation of β-sheets, π-orbital overlaps, and mineralization resulted in highly interconnected dendritic structures under suitable KOH concentrations. Electrical measurements indicated that when well-interconnected, these dendritic structures maintained conductivities comparable to those of metals at around 1800 S/cm. About 50 mA current was measured for 0.5 V/37.5 μm. Varying the gate voltage in a transistor configuration had no effect on the current levels, indicating a conductive instead of a semiconducting pathway. Control experiments without the peptide, measurements of conductivity over time, and conductivity quenching by ammonia suggested the conductivity of these dendritic networks was derived from proton doping of the central π-electron units in a strong acid environment and was facilitated by closely spaced chromophores, as suggested in the literature, leading to facile π-electron transfer along the interconnected dendritic pathways. Our findings suggest that mineralization templated by appropriate amino acids combined with peptide/π-electron self-assembly can lead to highly conductive dendritic macrostructures as well as control of nanowire growth in specific directions.
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Affiliation(s)
- Taein Lee
- Department of Materials Science and Engineering and Department of Chemistry , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - Sayak Subhra Panda
- Department of Materials Science and Engineering and Department of Chemistry , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - John D Tovar
- Department of Materials Science and Engineering and Department of Chemistry , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - Howard E Katz
- Department of Materials Science and Engineering and Department of Chemistry , Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
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