Highly Sensitive and Selective Surface-Enhanced Raman Spectroscopy Label-free Detection of 3,3',4,4'-Tetrachlorobiphenyl Using DNA Aptamer-Modified Ag-Nanorod Arrays

Ultrasensitive monitoring of PCB77 in environmental samples using a visible-driven photoelectrochemical sensing platform coupling with exonuclease I assisted in target recycling

Due to the urgent need for detecting trace amounts of 3,3',4,4'-tetrachlorobiphenyl (PCB77) in the environment, we have developed an efficient and visible-driven photoelectrochemical (PEC) sensing platform based on carbon quantum dots (CQDs) modified titanium dioxide nanorods (TiO2 NRs), coupling with exonuclease I (Exo I) assisted in target recycling for significant signal amplification. CQDs/TiO2 NRs with high visible-light absorption ability and electron-hole separation efficiency is used as photoactive substrate for anchoring anti-PCB77 aptamer and its complementary DNA (cDNA). With the addition of PCB77, the specific interaction between PCB77 and its aptamer forces aptamer to separate from the electrode surface, resulting in an increase in photocurrent density. Adding Exo I in the test system, a self-catalytic target cycle was motivated, which significantly increased the PEC signal by more than twice, achieving signal amplification. The relationship between the photocurrent density changes and the concentrations of PCB77 are utilized to achieve quantitative detection of PCB77. The designed PEC sensing platform has good analytical performance with a detection limit as low as 0.33 pg L-1, high selectivity and stability. Moreover, the PEC sensor is successfully used to evaluate the content of PBC77 in the environment samples. The established sensing platform provides a simple and efficient method for detecting trace amounts of PCB77 in the environment.

A review on nanomaterial-based SERS substrates for sustainable agriculture

The agricultural sector plays a pivotal role in driving the economy of many developing countries. Any dent in this economical structure may have a severe impact on a country's population. With rising climate change and increasing pollution, the agricultural sector is experiencing significant damage. Over time this cumulative damage will affect the integrity of food crops and create food security issues around the world. Therefore, an early warning system is needed to detect possible stress on food crops. Here we present a review of the recent developments in nanomaterial-based Surface Enhanced Raman Spectroscopy (SERS) substrates which could be utilized to monitor agricultural crop responses to natural and anthropogenic stress. Initially, our review delves into diverse and cost-effective strategies for fabricating SERS substrates, emphasizing their intelligent utilization across various agricultural scenarios. In the second phase of our review, we spotlight the specific application of SERS in addressing critical food security issues. By detecting nutrients, hormones, and effector molecules in plants, SERS provides valuable insights into plant health. Furthermore, our exploration extends to the detection of contaminants, chemicals, and foodborne pathogens within plants, showcasing the versatility of SERS in ensuring food safety. The cumulative knowledge derived from these discussions illustrates the transformative potential of SERS in bolstering the agricultural economy. By enhancing precision in nutrient management, monitoring plant health, and enabling rapid detection of harmful substances, SERS emerges as a pivotal tool in promoting sustainable and secure agricultural practices. Its integration into agricultural processes not only augments productivity but also establishes a robust defence against potential threats to crop yield and food quality. As SERS continues to evolve, its role in shaping the future of agriculture becomes increasingly pronounced, promising a paradigm shift in how we approach and address challenges in food production and safety.

Detection of SARS-CoV-2 N protein using AgNPs-modified aligned silicon nanowires BioSERS chip

The SARS-CoV-2 (COVID-19) pandemic had a strong impact on societies and economies worldwide and tests for high-performance detection of SARS-CoV-2 biomarkers are still needed for potential future outbreaks of the disease. In this paper, we present the different steps for the design of an aptamer-based surface-enhanced Raman scattering (BioSERS) sensing chip capable of detecting the coronavirus nucleocapsid protein (N protein) in spiked phosphate-buffered solutions and real samples of human blood serum. Optimization of the preparation steps in terms of the aptamer concentration used for the functionalization of the silver nanoparticles, time for affixing the aptamer, incubation time with target protein, and insulation of the silver active surface with cysteamine, led to a sensitive BioSERS chip, which was able to detect the N protein in the range from 1 to 75 ng mL-1 in spiked phosphate-buffered solutions with a detection limit of 1 ng mL-1 within 30 min. Furthermore, the BioSERS chip was used to detect the target protein in scarcely spiked human serum. This study demonstrates the possibility of a clinical application that can improve the detection limit and accuracy of the currently commercialized SARS-CoV-2 immunodiagnostic kit. Additionally, the system is modular and can be applied to detect other proteins by only changing the aptamer.

Recent developments and applications of surface enhanced Raman scattering spectroscopy in safety detection of fruits and vegetables

This article reviewed the latest research progress of Surface-enhanced Raman Spectroscopy (SERS) in the security detection of fruits and vegetables in recent years, especially in three aspects: pesticide residues, microbial toxin contamination and harmful microorganism infection. The binding mechanism and application potential of SERS detection materials (including universal type and special type) and carrier materials (namely rigid and flexible materials) were discussed. Finally, the application prospect of SERS in fruit and vegetable safety detection was explored, and the problems to be solved and development trends were put forward. The poor stability and reproducibility of SERS substrates make it difficult for practical applications. It is necessary to continuously optimize SERS substrates and develop small and portable Raman spectroscopy analyzers. In the future, SERS technology is expected to play an important role in human health, food safety and economy.

Advancements in nanomaterial-based aptasensors for the detection of emerging organic pollutants in environmental and biological samples

The combination of nanomaterials (NMs) and aptamers into aptasensors enables highly specific and sensitive detection of diverse pollutants. The great potential of aptasensors is recognized for the detection of diverse emerging organic pollutants (EOPs) in different environmental and biological matrices. In addition to high sensitivity and selectivity, NM-based aptasensors have many other advantages such as portability, miniaturization, facile use, and affordability. This work showcases the recent advances achieved in the design and fabrication of NM-based aptasensors for monitoring EOPs (e.g., hormones, phenolic contaminants, pesticides, and pharmaceuticals). On the basis of their sensing mechanisms, the covered aptasensing systems are classified as electrochemical, colorimetric, PEC, fluorescence, SERS, and ECL. Special attention has been paid to the fabrication processes, analytical achievements, and sensing mechanisms of NM-based aptasensors. Further, the practical utility of aptasensing approaches has also been assessed based on their basic performance metrics (e.g., detection limits, sensing ranges, and response times).

Application of SERS in the Detection of Fungi, Bacteria and Viruses

In this review, we report the recent advances of SERS in fungi, bacteria, and viruses. Firstly, we briefly introduce the advantage of SERS over fluorescence on virus identification and detection. Secondly, we review the feasibility analysis of Raman/SERS spectrum analysis, identification, and fungal detection on SERS substrates of various nanostructures with a signal amplification mechanism. Thirdly, we focus on SERS spectra for nucleic acid, pathogens for the detection of viruses and bacteria, and furthermore introduce SERS-based microdevices, including SERS-based microfluidic devices, and three-dimensional nanostructured plasmonic substrates.

Highly sensitive detection of three protein toxins via SERS-lateral flow immunoassay based on SiO2@Au nanoparticles

We developed surface-enhanced Raman scattering-lateral flow immunoassay (SERS-LFIA) biosensor strips based on SiO₂@Au nanoparticles (NPs) for the specific and highly sensitive detection of ricin, staphylococcal enterotoxin B (SEB), and botulinum neurotoxin type A (BoNT/A). SiO₂@Au NPs were used to prepare SERS tags with useful properties, such as light weight, uniform particle size, good dispersion, and high SERS performance. The detection limit of the SERS-LFIA strips developed herein for ricin, SEB, and BoNT/A was 0.1, 0.05, and 0.1 ng/mL. Their sensitivity was 100-fold higher than that of colloidal gold-LFIA strips, and the same batch of strips had good repeatability. Moreover, the test was completed within 15 min, indicating that the strips are suitable for the rapid and on-site detection of the said toxins. The SERS-LFIA strips based on SiO₂@Au NPs developed herein for the detection of toxins are important to the prevention of bioterrorism attacks.

Simultaneous and rapid detection of polychlorinated phenols in water samples by surface-enhanced Raman spectroscopy combined with principal component analysis

In this work, a simple, high-throughput, and sensitive analytical method based on surface-enhanced Raman spectroscopy (SERS) and principal component analysis (PCA) was fabricated for simultaneous and rapid determination of three polychlorinated phenols (PCPs) including 2,4-dichlorophenol (2,4-DCP), 2,4,5-trichlorophenol (2,4,5-TCP), and 2,3,4,6-tetrachlorophenol (2,3,4,6-TeCP). The aggregated Ag nanoparticles (AgNPs) induced by inorganic salt ions were used as sensitive SERS substrate, and the electromagnetic field distribution of AgNPs with different distances was simulated by finite difference time domain (FDTD) to verify the theory feasibility. The high throughput and rapid detection can be achieved by commercial 96-pore plate. Under the optimum conditions, the linear relationship between the Raman intensity and the concentrations of PCPs was established with satisfied correlation coefficient. The limits of detection (LOD) for 2,4-DCP, 2,4,5-TCP, and 2,3,4,6-TeCP are 0.27 mg L-1, 0.09 mg L-1, and 0.10 mg L-1 by rules of 3σ, respectively. The simultaneous quantitative analysis can be achieved thanks to the independent Raman characteristic peaks of three PCPs. Afterwards, the PCA method was used to eliminate the limitations of overlapping of characteristic Raman peaks in structural analogues of 2,4-DCP, 2,4,5-TCP, and 2,3,4,6-TeCP. The recovery experiments including single PCPs and mixed PCP samples show satisfied recoveries ranging from 85.0 to 113.9% and 80.4 to 114.0% with RSDs in range of 0.4-9.5% and 1.1-10.7%, respectively. The proposed method shows great potentials in rapid, high-throughput, and sensitive monitoring of the contaminants in water and pesticide samples with similar structure. Here, we introduced aggregated Ag nanoparticles (AgNPs) induced by inorganic salt ion for simultaneous, rapid, and sensitive determination of polychlorinated phenols (PCPs) including 2,4-dichlorophenol (2,4-DCP), 2,4,5-trichlorophenol (2,4,5-TCP), and 2,3,4,6-tetrachlorophenol (2,3,4,6-TeCP) by surface-enhanced Raman spectroscopy (SERS) combined with principal component analysis (PCA). The AgNPs induced by inorganic salt ions were used as sensitive SERS substrate, and the electromagnetic field distribution of AgNPs with different distances was simulated by finite difference time domain (FDTD) to verify the theory feasibility. The PCA method was used to eliminate the limitations of overlapping of characteristic Raman peaks in structural analogues of 2,4-DCP, 2,4,5-TCP, and 2,3,4,6-TeCP. The proposed method shows great potentials in rapid, high-throughput, and sensitive monitoring of the contaminants in water and pesticide samples with similar structure.

In Situ Monitoring of DNA-Hg2+ Binding Reaction within Confined Nanospace of Metamaterial Nanochannel by Plasmon-Enhanced Raman Scattering

Nanochannel-based plasmon-enhanced Raman scattering (PERS) substrates can simulate biological environments, revealing the recognition and conformation information on biomolecules in confined spaces. In this work, a metamaterial nanochannel-based PERS platform was constructed for highly sensitive analysis of DNA recognition to Hg²⁺ with the lowest Hg²⁺ concentration down to 1.0 pM. The established platform enables in situ monitoring of the thermodynamics and kinetics of DNA-Hg²⁺ recognition reaction in a confined nanospace. The recognition reaction in a nanospace shows good reversibility and specificity, and the isotherm follows well the Freundlich adsorption model. Compared to its folding on a rough Au nanofilm, the folding time of ssDNA-Rox decorated in nanochannels is remarkably increased, and the folding process can be tuned through varying the pore size and ionic strength. The presented PERS platform is promising for studying biomolecule-ion binding events and biomolecule conformation change under nanochannel-confined conditions.

AAO Template-Assisted Fabrication of Ordered Ag Nanoparticles-Decorated Au Nanotubes Array for Surface-Enhanced Raman Scattering Detection

Highly sensitive and reproducible surface-enhanced Raman scattering (SERS) substrates are the main challenge for practical applications. In this work, an ordered and hierarchical Ag nanoparticles (Ag-NPs)-decorated Au nanotubes (Au-NTs) array was achieved based on a funnel-shaped pore anodic aluminum oxide (AAO) template-assisted strategy. First, funnel-pore-AAO templates were fabricated by further oxidation of conical-pore-AAO templates achieved by multistep anodization and etching. Then physical sputtering was used to assemble the Au-NTs and Ag-NPs using the as-prepared funnel-pore-AAO as sacrificial templates. SEM revealed abundant sub-10 nm neighboring gaps and sub-10 nm nanocavities at the bottom of the nanotubes because of the special shape of the AAO template, which resulted in abundant strong “hot spots” contributing to the sensitive SERS detection. The resultant hierarchical substrates manifested a SERS enhancement factor of 1.8 × 107 and reproducible response to 10−11 M rhodamine 6G and 10−8 M methyl parathion, showing potential in SERS-based rapid detection of trace pollutants in the environment.

Signal enhancing strategies in aptasensors for the detection of small molecular contaminants by nanomaterials and nucleic acid amplification

Small molecular contaminants (such as mycotoxins, antibiotics, pesticide residues, etc.) in food and environment have given rise to many biological and ecological toxicities, which has attracted worldwide attention in recent years. Meanwhile, due to the advantages of aptamers such as high specificity and stability, easy synthesis and modification, as well as low cost and immunogenicity, various aptasensors for the detection of small molecular contaminants have been flourishing. An aptasensor as a whole is composed of an aptamer-based target recognizer and a signal transducer, which are fields of concentrated research. In the practical detection applications, in order to achieve the quantitative detection of small molecular contaminants at low abundance in real samples, a large number of signal enhancing strategies have been utilized in the development of aptasensors. Recent years is a vintage period for efficient signal enhancing strategies of aptasensors by the aid of nanomaterials and nucleic acid amplification that are applied in the elements for target recognition and signal conversion. Therefore, this paper meticulously reviews the signal enhancing strategies based on nanomaterials (including the (quasi-)zero-dimensional, one-dimensional, two-dimensional and three-dimensional nanomaterials) and nucleic acid amplification (including enzyme-assisted nucleic acid amplification and enzyme-free nucleic acid amplification). Furthermore, the challenges and future trends of the abovementioned signal enhancing strategies for application are also discussed in order to inspire the practitioners in the research and development of aptasensors for small molecular contaminants.

Highly Sensitive Detection of Elevated Exosomal miR-122 Levels in Radiation Injury and Hepatic Inflammation Using an Aptamer-Functionalized SERS-Sandwich Assay

Radiation-induced organ injury is one of the major fallouts noticed during radiotherapy treatment of malignancies and other detrimental radiation exposures. MicroRNA (miRNA), which is involved in multiple critical cellular processes, is released from the cells of damaged organs in cellular vesicles, commonly known as exosomes. Specifically, exosomal miR-122 is reported to be actively involved in radiation-actuated rectal and hepatic injuries or inflammation. In this work, we developed a surface-enhanced Raman spectroscopy (SERS) assay for the quantitative and targeted detection of exosomal miR-122 in mice after drug/radiation treatments. In particular, an aptamer-functionalized magnetic capturing element and Au shell nanoparticle (NP)-based SERS tags were utilized, which upon recognition of the target miRNA constituted a "sandwich" formation, with which an 8 fM limit of detection (LOD) could be achieved. Using this SERS assay, we further found that radiation injury led to the elevated expression of exosomal miR-122 in mice at 4 h postirradiation, confirmed by the quantitative real-time PCR method. It was demonstrated that the drug-induced hepatic inflammation could also be assessed via detecting miR-122 using this SERS method. As such, this work has demonstrated the achievement of a highly selective and sensitive probe of exosomal miRNA, which may thus open a gateway for promising usage in drug/radiation-induced inflammation.

Advances in Surface-Enhanced Raman Scattering-Based Aptasensors for Food Safety Detection

Owing to the excellent performances of high sensitivity, high specificity, on-site detection, and multiplexing capability, surface-enhanced Raman scattering (SERS)-based aptasensors have performed prosperous applications and gained impressive progress in food safety. Herein, we reviewed the SERS-based aptasensors from the principles to specific applications in food safety. First, the sensor-working principles, SERS label design and preparation are introduced. Then, the popular platforms in the aptasensors are summarized with their advantages and disadvantages, followed by their representative applications. Further, the specific applications of developing SERS-based aptasensors in food safety are systematically provided. Moreover, the multiplex analysis using SERS labels are highlighted. Finally, challenges and perspectives for improving the SERS-based aptasensor performance are also discussed, aiming to give some proposes for researchers to choose suitable SERS-based aptasensors according to specific applications.

Visual Test Paper for on-Site Polychlorinated Biphenyls Detection and Its Logic Gate Applications

A visual detection method was proposed for polychlorinated biphenyls (PCBs) detection using lateral flow test paper as the sensing platform. The aptamer sequence was used to recognize the target 3,3',4,4'-tetrachlorobiphenyl (PCB77). The integration of Zn²⁺-dependent DNAzyme with toehold-mediated strand displacement reaction significantly improved the response signals. Gold nanoparticles were utilized as the signal tracers in the test paper, making the results visible directly by the naked eye. Under optimal conditions, the paper enables the visual detection of PCB77 as low as 10 pM without additional instrumentation. The assay displays a high selectivity for PCB77 against potential interfering molecules. The visual test paper is robust and has been applied to the detection of PCB77 in milk samples with good recovery and satisfactory accuracy. Using two different PCBs (PCB77 and PCB72) as inputs, we further fabricated OR and AND logic gates, which is conducive to the development of an intelligent detection strategy for PCBs monitoring. Given the attractive characteristics of disposability, low cost, logic operation, and intuitive output, the test paper shows great promise for on-site screening of PCBs in resource-limited areas.

Enhancing Raman signals from bacteria using dielectrophoretic force between conductive lensed fiber and black silicon

An osmium-coated lensed fiber (OLF) probe combined with a silver-coated black silicon (SBS) substrate was used to generate a dielectrophoretic (DEP) force that traps bacteria and enables Raman signal detection from bacteria. The lensed fiber coated with a 2-nm osmium layer was used as an electrode for the DEP force and also as a lens to excite Raman signals. The black silicon coated with a 150-nm silver layer was used both as the surface-enhanced Raman scattering (SERS) substrate and the counter electrode. The enhanced Raman signal was collected by the same OLF probe and further analyzed with a spectrometer. For Raman measurements, a drop of bacterial suspension was placed between the OLF probe and the SBS substrate. By controlling the frequency of an AC voltage on the OLF probe and SBS substrate, a DEP force at 1 MHz concentrated bacteria on the SBS surface and removed the unbound micro-objects in the solution at 1 kHz. A bacteria concentration of 6 × 10⁴ CFU/mL (colony forming units per mL) could be identified in less than 15 min, using a volume of only 1 μL, by recording the variation of the Raman peak at 740 cm^-1.

Three-dimensional SERS sensor based on the sandwiched G@AgNPs@G/PDMS film

Three-dimensional (3D) SERS substrate with the denser "hotspots" is synthesized by the constriction of PDMS film decorated with sandwiched graphene@AgNPs@graphene (G@AgNPs@G) nanostructure. Graphene layers above and below the AgNPs are used to absorb molecules onto the "hotspots", and prevent the oxidation of AgNPs in our design. PDMS films can be easily shrunk for 3D structures, causing advantages in enhancement ability and light-matter interaction. Benefiting from the above advantages, a detection limit of 10^-14 M (CV) and enhancement factor (EF) of 3.9 × 10⁹ were obtained in our experiment. Theoretical analyses (FDTD) were also used to study the enhancement mechanism. For practical purposes, in-situ detection of MG molecules on the fish surface and the label-free detection of DNA base of adenine (A) and cytosine (C) were also studied. The high enhancement factor, great sensitivity, reliability, and stability of substrate reasonably proved that it can be used as an excellent SERS substrate for biomolecular detection.

A review of aptamer-based SERS biosensors: Design strategies and applications

Surface-enhanced Raman spectroscopy, due to its high sensitivity, unique vibrational fingerprint identification of molecules and easy operation, has been extensively applied in different fields. Aptamers, being the unique single stranded DNA/RNA sequences that can specifically recognize and seize the target analytes, combined with Surface-enhanced Raman spectroscopy (SERS), can offer potent multiplex detection capacity with high specificity and sensitivity. In this review, we summarize and classify the general working strategies of different types of aptamer-based SERS biosensors with diversified protocols which either take aptamer conformational change as intrinsic reporter, or make use of various extrinsic Raman reporters in different sensor designs via on/off approach, sandwich-type and magnetic nanoparticles (NPs)-assisted approach, and catalytic reaction assisted approach with amplification of alternative Raman signals. The advantages, applications and perspectives of these aptamer-based SERS biosensors are also discussed.

Highly sensitive and selective detection of PCB 77 using an aptamer-catalytic hairpin assembly in an aquatic environment

Polychlorinated biphenyls (PCBs) are synthetic organic compounds that are extremely difficult to break down in water and can accumulate in human fat and organisms. However, methods that can be used to detect large amounts of PCBs remain unsatisfactory, as they are generally overly sensitive and involve complex operations. An aptamer-based catalytic hairpin assembly (aptamer-CHA) reaction for the selective detection of 3,3′,4,4′-tetrachlorobiphenyl (PCB 77) was developed. It combines the advantages of aptamers and signal amplification reactions. The aptamer selectivity recognizes the target, PCB 77, which triggers the sensitive CHA reaction to produce a fluorescence signal. CHA is a sensitive enzyme-free signal amplification method suitable for on-site detection. Therefore, the identification aptamer is the basis for the quantitative detection of PCB 77, with a detection range of 0.01 μg L⁻¹ to 500 μg L⁻¹ and a detection limit of 0.01 μg L⁻¹. In this study, the aptamer was used to improve the selectivity of the reaction, and the CHA reaction improved the sensitivity of the detection system. Such high-sensitivity PCB detection capabilities with simplified procedures may be useful for real-time field detection and other monitoring tasks. This method can be used as a rapid fluorescence detection strategy for other targets in aquatic environments.

The fluorescence sensing strategy was used to detect PCB77 based on the aptamer-complex and catalytic hairpin assembly.

Towards a point-of-care SERS sensor for biomedical and agri-food analysis applications: a review of recent advancements

The growing demand for reliable and robust methodology in bio-chemical sensing calls for the continuous advancement of sensor technologies. Over the last two decades, surface-enhanced Raman spectroscopy (SERS) has emerged as one of the most promising analytical techniques for sensitive and trace analysis or detection in biomedical and agri-food applications. SERS overcomes the inherent sensitivity limitation associated with Raman spectroscopy, which provides vibrational "fingerprint" spectra of molecules that makes it unique and versatile among other spectroscopy techniques. This paper comprehensively reviews the recent advancements of SERS for biomedical, food and agricultural applications over the last 6 years, and we envision that, in the near future, some of these platforms have the potential to be translated as a point-of-care and rapid sensor for real-life end-user applications. The merits and limitations of various SERS sensor designs are analysed and discussed based on critical features such as sensitivity, specificity, usability, repeatability and reproducibility. We conclude by highlighting the opportunities and challenges in the field while stressing the technological gaps to be addressed in realizing commercially viable point-of-care SERS sensors for practical biomedical and agri-food technological applications.

An ultrasensitive platform for PCB77 detection: New strategy for liquid crystal-based aptasensor fabrication

Polychlorinated biphenyls (PCBs) are considered persistent bio-accumulative toxicants which threats global food safety and environmental health. Traditional analytical techniques for detection of PCBs are time-consuming and they do not satisfy urgent need for rapid and accurate monitoring of these persistent pollutants. Biosensor technology may be promising in this respect. Here we demonstrate a novel liquid crystal (LC)-based aptasensing platform as a promising label-free and rapid biosensor for PCB77 detection. This novel molecular strategy utilize triple-helix molecular conformational switch which is mediated formation of duplex on sensing platform in presence of target. Duplex forming leads to optical change from dark to bright in a liquid crystal based aptasensor. The limit of quantification of the LC-aptasensor to PCB77 is 1.5 × 10^-5 μg/L with comparable selectivity. Besides, we also demonstrated that this system is able to detect PCB77 in tap water, environmental water and milk. This strategy has potential for label-free and portable detection of different targets without any aptamer sequence length restrictions.

Target triggered ultrasensitive electrochemical polychlorinated biphenyl aptasensor based on DNA microcapsules and nonlinear hybridization chain reaction

In this work, we demonstrated an ultrasensitive detection platform for polychlorinated biphenyls (PCBs) based on DNA microcapsules and a nonlinear hybridization chain reaction (NHCR). In the process, first, electrochemical signal molecules (Methylene Blue, MB) were sealed in the prepared DNA microcapsules. In the presence of PCB-72, DNA microcapsules could be dissociated with the conjugation of the aptamer and target, and meanwhile, the released DNA strand could initiate the NHCR and trigger the chain branching growth of DNA dendrimers. Because the released MBs were intercalated into the DNA dendrimer, enhanced electrochemical responses could be detected. This method exhibited ultrahigh sensitivity to PCB-72 with a detection limit of 0.001 ng mL-1. Furthermore, the present aptasensor was also capable of discriminating different PCB congeners. Therefore, the devised label-free and enzyme-free amplification electrochemical aptasensor strategy has great potential for the detection of PCB-72 in real samples, and this strategy may also become an attractive alternative for sensitive and selective small molecule, protein, nucleic acid and nuclease activity detection.

Development of affinity between target analytes and substrates in surface enhanced Raman spectroscopy for environmental pollutant detection

Environmental pollution has long been a social concern due to the variety of pollutants and their wide distribution, persistence and being detrimental to health. It is therefore necessary to develop rapid and sensitive strategies to trace and detect these compounds. Among various detection methodologies, surface enhanced Raman spectroscopy (SERS) has become an attractive option as it enables accurate analyte identification, simple sample preparation, rapid detection and ultra-high sensitivity without any interference from water. For SERS detection, an essential yet challenging step is the effective capture of target analytes onto the surface of metal nanostructures with a high intensity of enhanced electromagnetic field. This review has systematically summarized recent advances in developing affinity between targets and the surface of SERS substrates via direct adsorption, hydrophobic functional groups, boronate affinity, metal organic frameworks (MOFs), DNA aptamers and molecularly imprinted polymers (MIPs). At the end of this review, technical limitations and outlook have been provided, with suggestions on optimizing SERS techniques for real-world applications in environmental pollutant detection.

An electrochemical aptasensor-based CoxP-decorated porous carbon microspheres and AuNRs labelled methylene blue as signal labels for the sensitive detection of PCB77

In this work, a simple, specific and ultra-sensitive electrochemical aptasensor was successfully developed based on a novel signal reduction strategy for the detection of polychlorinated biphenyls (PCB77). This aptasensor was prepared by the electrodeposition of gold nanoparticles (AuNPs) on an Au electrode (AuE) modified with cobalt phosphide (Co_xP, a mixture of CoP and Co₂P) decorated porous carbon microspheres. In this study, the thiolated single-complementary DNA (cDNA) was immobilized on the surface of the modified electrode via the Au-S bond. Subsequently, the gold nanorod@methylene blue connection aptamer (AuNRs@MB-Apt) signal labels were immobilized onto the modified electrode through the principle of complementary base pairing. Further, the aptamer preferentially binds to PCB77, decreasing the amount of AuNR@MB-Apt. The DPV current response was related to the PCB77 concentration. Under the optimized experimental conditions, a low detection limit of 5.9 × 10^-2 ng L^-1 and a wide linear range of 1 × 10^-11 mg mL^-1 to 1 × 10^-4 mg mL^-1 (S/N = 3) for PCB77 were achieved. Moreover, the proposed aptasensor offered high selectivity, stability and reproducibility, indicating the broad potential application in environmental monitoring.

Polychlorinated Biphenyl Electrochemical Aptasensor Based on a Diamond-Gold Nanocomposite to Realize a Sub-Femtomolar Detection Limit

Polychlorinated biphenyls (PCBs) with high toxicity, low lethal dose, and bioaccumulation have been inhibited for application in wide fields, and a highly efficient trace detection is thus greatly desirable. In this study, we produce dense Au-nanoparticles by twice sputtering and twice annealing (T-Au-NPs) on boron-doped diamond (BDD). The successful formation of T-Au-NPs/BDD nanocomposites was confirmed by scanning electron microscopy, X-ray diffraction, Raman spectroscopy, and X-ray photoelectron spectroscopy analysis. Based on T-Au-NPs/BDD, an electronic biosensor with aptamers is fabricated to detect trace polychlorinated biphenyl-77 (PCB-77) by electrochemical impedance. A good linear relationship in the range of femtomolar to micromolar and significantly low detection limit of sub-femtomolar level (0.32 fM) are realized based on the biosensor. The emphasis of this research lies in the key role of the diamond substrate in the biosensor. It is demonstrated that the biosensor has excellent sensitivity, specificity, stability, and recyclability, which are favorable for detecting the trace PCB-77 molecule. It is attributed to the important effect presented by the BDD substrate and the synergistic influence of T-Au-NPs combined with aptamers.

Fabrication and Applications of 3D Nanoarchitectures for Advanced Electrocatalysts and Sensors

For the last few decades, nanoscale materials and structures have been extensively studied and developed, making a huge impact on human sustainability. For example, the introduction of nanostructures has brought substantial development in electrocatalysts and optical sensing applications. However, there are still remaining challenges that need to be resolved to further improve their performance, reliability, and cost-effectiveness. Herein, long-range ordered 3D nanostructures and their design principles are introduced with an emphasis on electrocatalysts for energy conversion and plasmonic nanostructures for optical sensing. Among the various fabrication techniques, sequential solvent-injection-assisted nanotransfer printing is suggested as a practical fabrication platform for tunable long-range ordered 3D nanostructures composed of ultrahigh-resolution building blocks. Furthermore, the importance of understanding and controlling the 3D design parameters is discussed to realize more efficient energy conversion as well as effective surface-enhanced Raman spectroscopy analyses, suggesting new solutions for clean energy and healthcare issues.

A Review of Chinese Raman Spectroscopy Research Over the Past Twenty Years

This paper introduces the major Chinese research groups in the fields of biomedicine, food safety, environmental testing, material research, archaeological and cultural relics, gem identification, forensic science, and other research areas of Raman spectroscopy and combined methods spanning the two decades from 1997 to 2017. Briefly summarized are the research directions and contents of the major Chinese Raman spectroscopy research groups, giving researchers engaged in Raman spectroscopy research a more comprehensive understanding of the state of Chinese Raman spectroscopy research and future development trends to further develop Raman spectroscopy and its applications.

Combining microextraction methods with surface-enhanced Raman spectroscopy towards more selective and sensitive analyte detection by plasmonic metal nanoparticles

Raman signals of analytes can be enhanced on the surface of noble nanoparticles by generating SERS signals, which can be further enhanced using microextraction (ME) techniques.

Label-free SERS diagnostics of radiation-induced injury via detecting the biomarker Raman signal in the serum and urine bio-samples based on Au-NPs array substrates

A sensitive approach based on surface enhanced Raman spectroscopy (SERS) has been developed to evaluate the radiation caused biological injury. To achieve the effective SERS substrate, canonical anodic aluminum oxide (AAO) templates with regular array of nanotips were fabricated, and by plasma sputtering the gold nanoparticles (Au-NPs) were distributed on the nanotips to form the Au-NPs array with plenty of hotspots. The SERS substrates were utilized to examine the serum samples taken from the mice with the treatment of total body irradiation (TBI) of X-ray. The impact of TBI on the mice was analyzed and it was found that the SERS peak intensity at 532 cm^-1 increased as a function of duration or dose of TBI. We confirmed that this Raman signature belongs to the myoglobin as a biomarker for the muscle damage due to the radiation caused injury. Furthermore, we also tested several blood and urine specimen of cancer patients who received radiotherapy. The results showed that our approach to some extent could distinguish the bio-samples from normal, X-ray treated and untreated individuals. Therefore, the proposed methodology may have the potential for prompt prognosis of radiation injury at early stage.

Label-free and highly selective electrochemical aptasensor for detection of PCBs based on nickel hexacyanoferrate nanoparticles/reduced graphene oxides hybrids

In consideration of the urgent need to determine polychlorinated biphenyls (PCBs) in the environment, a label-free and highly selective electrochemical aptasensor was constructed for determining PCBs based on nickel hexacyanoferrate nanoparticles (NiHCF NPs)/reduced graphene oxides (rGO) hybrids. NiHCF NPs/rGO hybrids with small size of about 5 nm NiHCF NPs were synthesized for the first time by in situ co-deposition of NiHCF NPs on rGO surface. In the hybrids, rGO with large area and good conductivity can supply more space for loading NiHCF NPs and improve the conductivity of the hybrids. NiHCF NPs that can be used to be act as a signal probe exhibit a couple of well-defined peaks with highly reversible redox ability and good stability. Here, PCB77 as a model molecule, the anti-PCB77 aptamer was anchored on the NiHCF NPs/rGO hybrids by covalent bonding reaction. The design aptasensor for detecting PCB77 exhibits a favorable linear response from 1.0 to 100.0 ng/L with a low detection limit of 0.22 ng/L. Meanwhile, it displays good selectivity for PCB77 detection due to the specificity and high affinity of aptamer to PCB77. Additionally, the application of the aptasensor was evaluated in real environmental samples.

Toward the highly sensitive SERS detection of bio-molecules: the formation of a 3D self-assembled structure with a uniform GO mesh between Ag nanoparticles and Au nanoparticles

We report a structure to form a hybrid system in which a mesh is sandwiched between Au nanoparticles (AuNPs) and Ag nanoparticles (AgNPs). This self-assembly method uses smaller and denser AgNPs "hot spots" that are spin-coated on a AuNPs@GO mesh nanostructure formed by the reaction of GO@MoS₂ and HAuCl₄ to form AuNPs@GO mesh@AgNPs SERS substrates. Sub-40-nm mesh and 10-nm gaps ensure the landing sites and spacing of the AgNPs. Consequently, the design integrates the strong plasmonic effects of AgNPs and AuNPs with the biological compatibility of the GO mesh. Crystal violet (CV) as low as 10^-15 M can be detected, which confirms the ultrahigh sensitivity of AuNPs@GO mesh@AgNPs. Furthermore, the reproducibility, stability, and finite-difference time-domain (FDTD) simulations confirm the value of this SERS substrate. This material can be used for label-free DNA detection, and the AuNPs@GO mesh@AgNPs substrate facilitated single-molecule DNA detection limits.

Recent progress in the development of recognition bioelements for polychlorinated biphenyls detection: Antibodies and aptamers

Polychlorinated biphenyls (PCBs) are persistent pollutants, which have expanded in foods and the environment. Detection of PCBs is considered essential due to recognized side-effects of PCBs on health and the public concerns in this regard. On the other hand, due to the trace levels of these organic chlorine compounds, reliable and sensitive assays must be developed. Recognition elements are essential parts of analytical detection assays and sensors of PCBs since these elements are involved in the selective identification of the analytes of interest. Understanding the fundamentals of the recognition elements of PCBs and the benefits of the sensor strategies result in the development of next-generation recognition devices. This review aimed to highlight the recent progress in the recognition elements as key parts of biosensors. We initially, focused on the developed antibody-based biosensors for the detection of PCBs, followed by discussing the aptamers as novel recognition elements. Furthermore, the recent advancement in the development of aptamer-based solid phase extractions has been evaluated. These findings could contribute to improving the design of commercial PCB-kits in the future.

A label-free, ultra-highly sensitive and multiplexed SERS nanoplasmonic biosensor for miRNA detection using a head-flocked gold nanopillar

The combination of head-flocked gold nanopillars and sandwich DNA probes is an advanced label-free, ultra-high sensitive, multiplexed nanoplasmonic detection system of circulating miRNAs for cancer diagnosis and prognosis.

Molecular Affinity Agents for Intrinsic Surface-Enhanced Raman Scattering (SERS) Sensors

Research at the interface of synthetic materials, biochemistry, and analytical techniques has enabled sensing platforms for applications across many research communities. Herein we review the materials used as affinity agents to create surface-enhanced Raman spectroscopy (SERS) sensors. Our scope includes those affinity agents (antibody, aptamer, small molecule, and polymer) that facilitate the intrinsic detection of targets relevant to biology, medicine, national security, environmental protection, and food safety. We begin with an overview of the analytical technique (SERS) and considerations for its application as a sensor. We subsequently describe four classes of affinity agents, giving a brief overview on affinity, production, attachment chemistry, and first uses with SERS. Additionally, we review the SERS features of the affinity agents, and the analytes detected by intrinsic SERS with that affinity agent class. We conclude with remarks on affinity agent selection for intrinsic SERS sensing platforms.

Critical Review: DNA Aptasensors, Are They Ready for Monitoring Organic Pollutants in Natural and Treated Water Sources?

There is a growing need to monitor anthropogenic organic contaminants detected in water sources. DNA aptamers are synthetic single-stranded oligonucleotides, selected to bind to target contaminants with favorable selectivity and sensitivity. These aptamers can be functionalized and are used with a variety of sensing platforms to develop sensors, or aptasensors. In this critical review, we (1) identify the state-of-the-art in DNA aptamer selection, (2) evaluate target and aptamer properties that make for sensitive and selective binding and sensing, (3) determine strengths and weaknesses of alternative sensing platforms, and (4) assess the potential for aptasensors to quantify environmentally relevant concentrations of organic contaminants in water. Among a suite of target and aptamer properties, binding affinity is either directly (e.g., organic carbon partition coefficient) or inversely (e.g., polar surface area) correlated to properties that indicate greater target hydrophobicity results in the strongest binding aptamers, and binding affinity is correlated to aptasensor limits of detection. Electrochemical-based aptasensors show the greatest sensitivity, which is similar to ELISA-based methods. Only a handful of aptasensors can detect organic pollutants at environmentally relevant concentrations, and interference from structurally similar analogs commonly present in natural waters is a yet-to-be overcome challenge. These findings lead to recommendations to improve aptasensor performance.

Label-free SERS in biological and biomedical applications: Recent progress, current challenges and opportunities

To achieve an insightful look within biomolecular processes on the cellular level, the development of diseases as well as the reliable detection of metabolites and pathogens, a modern analytical tool is needed that is highly sensitive, molecular-specific and exhibits fast detection. Surface-enhanced Raman spectroscopy (SERS) is known to meet these requirements and, within this review article, the recent progress of label-free SERS in biological and biomedical applications is summarized and discussed. This includes the detection of biomolecules such as metabolites, nucleic acids and proteins. Further, the characterization and identification of microorganisms has been achieved by label-free SERS-based approaches. Eukaryotic cells can be characterized by SERS in order to gain information about the outer cell wall or to detect intracellular molecules and metabolites. The potential of SERS for medically relevant detection schemes is emphasized by the label-free detection of tissue, the investigation of body fluids as well as applications for therapeutic and illicit drug monitoring. The review article is concluded with an evaluation of the recent progress and current challenges in order to highlight the direction of label-free SERS in the future.

Ultrasensitive surface-enhanced Raman scattering detection of urea by highly ordered Au/Cu hybrid nanostructure arrays

We report a simple approach to fabricate cost-effective and highly sensitive surface-enhanced Raman scattering substrates based on Au/Cu hybrid nanostructure arrays for the detection of urea, an important molecule in biological and medical fields. By effectively adjusting the gap size between neighbouring nanorods into the sub-10 nm regime, a high density of hot-spots was generated, enabling the substrates to detect urea signals at a concentration as low as 1 mM with great reproducibility.

A highly sensitive and selective aptamer-based colorimetric sensor for the rapid detection of PCB 77

A highly sensitive, specific and simple colorimetric sensor based on aptamer was established for the detection of polychlorinated biphenyls (PCB 77). The use of unmodified gold nanoparticles as a colorimetric probe for aptamer sensors enabled the highly sensitive and selective detection of polychlorinated biphenyls (PCB 77). A linear range of 0.5nM to 900nM was obtained for the colorimetric assay with a minimum detection limit of 0.05nM. In addition, by the methods of circular dichroism, UV and naked eyes, we found that the 35 base fragments retained after cutting 5 bases from the 5 'end of aptamer plays the most significant role in the PCB 77 specific recognition process. We found a novel way to truncated nucleotides to optimize the detection of PCB 77, and the selected nucleotides also could achieve high affinity with PCB 77. At the same time, the efficient detection of the PCB 77 by our colorimetric sensor in the complex environmental water samples was realized, which shows a good application prospect.

Gold Nanoparticles dotted Reduction Graphene Oxide Nanocomposite Based Electrochemical Aptasensor for Selective, Rapid, Sensitive and Congener-Specific PCB77 Detection

Gold nanoparticles (AuNP) dotted reduction graphene oxide (RGO-AuNP) is used as a platform for an aptamer biosensor to selectively detect 3,3′4,4′-polychlorinated biphenyls (PCB77). By anchoring aptamers onto the binding sites of RGO-AuNP and making use of the synergy effect of RGO and AuNP, the RGO-AuNP based biosensor exhibits superior analytical performances to AuNP based biosensor in terms of sensitivity and repeatability. The sensitivity of RGO-AuNP based aptamers (RGO-AuNP-Ap) biosensor (226.8 μA cm⁻²) is nearly two times higher than that of Au based biosensors (AuNP-Ap/Au electrode, 147.2 μA cm⁻²). The RGO-AuNP-Ap/Au biosensor demonstrated a linear response for PCB77 concentrations between 1 pg L⁻¹ and 10 μg L⁻¹, with a low limit of detection (LOD) of 0.1 pg L⁻¹. The superb LOD satisfies the exposure thresholds (uncontaminated water < 0.1 ng L⁻¹) set out by International Agency for Research on Cancer (IARC) and the Environmental Protection Agency (EPA). The proposed biosensor can be a powerful tool for rapid, sensitive and selective detection of PCBs on site.