1
|
Long LL, Hu WX, Wang X, Yuan R, Chai YQ. Antibody-Protein-Aptamer Electrochemical Biosensor based on Highly Efficient Proximity-Induced DNA Hybridization on Tetrahedral DNA Nanostructure for Sensitive Detection of Insulin-like Growth Factor-1. Anal Chem 2024; 96:3837-3843. [PMID: 38384162 DOI: 10.1021/acs.analchem.3c05035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
Herein, an antibody-protein-aptamer electrochemical biosensor was designed by highly efficient proximity-induced DNA hybridization on a tetrahedral DNA nanostructure (TDN) for ultrasensitive detection of human insulin-like growth factor-1 (IGF-1). Impressively, the IGF-1 antibody immobilized on the top vertex of the TDN could effectively capture the target protein with less steric effect, and the ferrocene-labeled signal probe (SP) bound on the bottom vertex of the TDN was close to the electrode surface for generating a strong initial signal. In the presence of target protein IGF-1 and an aptamer strand, an antibody-protein-aptamer sandwich could be formed on the top vertex of TDN, which would trigger proximity-induced DNA hybridization to release the SP on the bottom vertex of TDN; therefore, the signal response would decrease dramatically, enhancing the sensitivity of the biosensor. As a result, the linear range of the proposed biosensor for target IGF-1 was 1 fM to 1 nM with the limit of detection down to 0.47 fM, which was much lower than that of the traditional TDN designs on electrochemical biosensors. Surprisingly, the use of this approach offered an innovative approach for the sensitive detection of biomarkers and illness diagnosis.
Collapse
Affiliation(s)
- Lin-Lin Long
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China
| | - Wen-Xi Hu
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China
| | - Xin Wang
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China
| | - Ruo Yuan
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China
| | - Ya-Qin Chai
- Key Laboratory of Luminescence Analysis and Molecular Sensing (Southwest University), Ministry of Education, College of Chemistry and Chemical Engineering, Southwest University, Chongqing 400715, P. R. China
| |
Collapse
|
2
|
Li J, Liang J, Lan MH, Xia XH. Atomic force microscopy-based nanoscale infrared techniques for liquid environments. Sci Bull (Beijing) 2024; 69:151-153. [PMID: 37993337 DOI: 10.1016/j.scib.2023.11.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2023]
Affiliation(s)
- Jian Li
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jing Liang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Mu-Hao Lan
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xing-Hua Xia
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China.
| |
Collapse
|
3
|
Li J, Liang J, Lan MH, Xia XH. Atomic Force Microscopy-Based Nanoscale Infrared Techniques for Catalysis. J Phys Chem Lett 2023; 14:11318-11323. [PMID: 38064367 DOI: 10.1021/acs.jpclett.3c02937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2023]
Abstract
Atomic force microscopy (AFM)-based nanoscale infrared (nano-IR) techniques have found extensive application in the fields of chemistry, physics, and materials science, enabling the visualization of nanoscale features that surpass the optical diffraction limit. More recently, tentative investigations have been conducted into the use of these techniques in the field of catalysis, particularly in studying interfacial processes involving molecular monolayer samples. IR nanoimaging and nanospectroscopy offer unique perspectives on catalytic processes. Considering the specific characteristics of catalytic processes, this Perspective highlights the need for and reviews the current status of AFM-based nano-IR techniques for catalysis investigations, which aims to contribute to a deeper understanding of the nanoscale mechanisms underlying the catalytic processes.
Collapse
Affiliation(s)
- Jian Li
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jing Liang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Mu-Hao Lan
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xing-Hua Xia
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| |
Collapse
|
4
|
de Oliveira R, Cadore AR, Freitas RO, Barcelos ID. Review on infrared nanospectroscopy of natural 2D phyllosilicates. JOURNAL OF THE OPTICAL SOCIETY OF AMERICA. A, OPTICS, IMAGE SCIENCE, AND VISION 2023; 40:C157-C168. [PMID: 37132988 DOI: 10.1364/josaa.482518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Phyllosilicates have emerged as a promising class of large bandgap lamellar insulators. Their applications have been explored from the fabrication of graphene-based devices to 2D heterostructures based on transition metal dichalcogenides with enhanced optical and polaritonics properties. In this review, we provide an overview of the use of infrared (IR) scattering-type scanning near-field optical microscopy (s-SNOM) for studying nano-optics and local chemistry of a variety of 2D natural phyllosilicates. Finally, we bring a brief update on applications that combine natural lamellar minerals into multifunctional nanophotonic devices driven by electrical control.
Collapse
|
5
|
Nam K, Kim H, Park W, Ahn JS, Choi S. Probing the optical near-field of plasmonic nano structure using scanning thermal microscopy. NANOTECHNOLOGY 2022; 34:105202. [PMID: 36562519 DOI: 10.1088/1361-6528/aca90f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Accepted: 12/06/2022] [Indexed: 06/17/2023]
Abstract
Scanning thermal microscopy (SThM) enables to obtain thermal characteristic information such as temperature and thermal conductivity from the signals obtained by scanning a thermometer probe over a sample surface. Particularly, the precise control of the thermometer probe makes it possible to study near-field radiative heat transfer by measuring the near-field thermal energy, which implies that when light is used as a local heat source, photothermal energy can be detected from the optical near-field by approaching the probe in the near-field region. In this study, SThM is applied to generate sub-wavelength near-field optical image in the plasmonic grating coupler. Herein, by controlling the surface plasmon polariton generation, we show that the dominant component of SThM signal is from the optical response rather than the thermal response. The obtained near-field optical images have a spatial resolution of 40 nm and signal to noise ratio of up to 19.8. In addition, field propagation images in theZ-direction can be visualised with the precise control of the distance between the thermometer probe and the sample.
Collapse
Affiliation(s)
- Kiin Nam
- Department of Physics, Incheon National University, Incheon 22012, Republic of Korea
| | - Hyuntae Kim
- Department of Physics, Incheon National University, Incheon 22012, Republic of Korea
| | - Woongkyu Park
- Medical & Bio Photonics Research Center, Korea Photonics Technology Institute, Gwangju 61007, Republic of Korea
| | - Jae Sung Ahn
- Medical & Bio Photonics Research Center, Korea Photonics Technology Institute, Gwangju 61007, Republic of Korea
| | - Soobong Choi
- Department of Physics, Incheon National University, Incheon 22012, Republic of Korea
| |
Collapse
|
6
|
Applications of Single-Molecule Vibrational Spectroscopic Techniques for the Structural Investigation of Amyloid Oligomers. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27196448. [PMID: 36234985 PMCID: PMC9573641 DOI: 10.3390/molecules27196448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 09/25/2022] [Accepted: 09/27/2022] [Indexed: 11/05/2022]
Abstract
Amyloid oligomeric species, formed during misfolding processes, are believed to play a major role in neurodegenerative and metabolic diseases. Deepening the knowledge about the structure of amyloid intermediates and their aggregation pathways is essential in understanding the underlying mechanisms of misfolding and cytotoxicity. However, structural investigations are challenging due to the low abundance and heterogeneity of those metastable intermediate species. Single-molecule techniques have the potential to overcome these difficulties. This review aims to report some of the recent advances and applications of vibrational spectroscopic techniques for the structural analysis of amyloid oligomers, with special focus on single-molecule studies.
Collapse
|
7
|
Probing both sides of the story. Proc Natl Acad Sci U S A 2022; 119:e2212419119. [PMID: 36070345 PMCID: PMC9499575 DOI: 10.1073/pnas.2212419119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022] Open
|
8
|
In vitro investigation of protein assembly by combined microscopy and infrared spectroscopy at the nanometer scale. Proc Natl Acad Sci U S A 2022; 119:e2200019119. [PMID: 35914130 PMCID: PMC9371722 DOI: 10.1073/pnas.2200019119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
The nanoscale structure and dynamics of proteins on surfaces has been extensively studied using various imaging techniques, such as transmission electron microscopy and atomic force microscopy (AFM) in liquid environments. These powerful imaging techniques, however, can potentially damage or perturb delicate biological material and do not provide chemical information, which prevents a fundamental understanding of the dynamic processes underlying their evolution under physiological conditions. Here, we use a platform developed in our laboratory that enables acquisition of infrared (IR) spectroscopy and AFM images of biological material in physiological liquids with nanometer resolution in a cell closed by atomically thin graphene membranes transparent to IR photons. In this work, we studied the self-assembly process of S-layer proteins at the graphene-aqueous solution interface. The graphene acts also as the membrane separating the solution containing the proteins and Ca2+ ions from the AFM tip, thus eliminating sample damage and contamination effects. The formation of S-layer protein lattices and their structural evolution was monitored by AFM and by recording the amide I and II IR absorption bands, which reveal the noncovalent interaction between proteins and their response to the environment, including ionic strength and solvation. Our measurement platform opens unique opportunities to study biological material and soft materials in general.
Collapse
|
9
|
Stanciu SG, Tranca DE, Zampini G, Hristu R, Stanciu GA, Chen X, Liu M, Stenmark HA, Latterini L. Scattering-type Scanning Near-Field Optical Microscopy of Polymer-Coated Gold Nanoparticles. ACS OMEGA 2022; 7:11353-11362. [PMID: 35415325 PMCID: PMC8992282 DOI: 10.1021/acsomega.2c00410] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2022] [Accepted: 03/07/2022] [Indexed: 05/14/2023]
Abstract
Scattering-type scanning near-field optical microscopy (s-SNOM) has emerged over the past years as a powerful characterization tool that can probe important properties of advanced materials and biological samples in a label-free manner, with spatial resolutions lying in the nanoscale realm. In this work, we explore such usefulness in relationship with an interesting class of materials: polymer-coated gold nanoparticles (NPs). As thoroughly discussed in recent works, the interplay between the Au core and the polymeric shell has been found to be important in many applications devoted to biomedicine. We investigate bare Au NPs next to polystyrenesulfonate (PSS) and poly(diallyldimethylammonium chloride) (PDDA) coated ones under 532 nm laser excitation, an wavelength matching the surface plasmon band of the custom-synthesized nanoparticles. We observe consistent s-SNOM phase signals in the case of bare and shallow-coated Au NPs, whereas for thicker shell instances, these signals fade. For all investigated samples, the s-SNOM amplitude signals were found to be very weak, which may be related to reduced scattering efficiency due to absorption of the incident beam. We consider these observations important, as they may facilitate studies and applications in nanomedicine and nanotechnology where the precise positioning of polymer-coated Au NPs with nanoscale resolution is needed besides their dielectric function and related intrinsic optical properties, which are also quantitatively available with s-SNOM.
Collapse
Affiliation(s)
- Stefan G. Stanciu
- Center
for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, 060042, Romania
| | - Denis E. Tranca
- Center
for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, 060042, Romania
| | - Giulia Zampini
- Department
of Chemistry, Biology and Biotechnology, Perugia University, Via Elce di sotto, 8, 06123 Perugia, Italy
| | - Radu Hristu
- Center
for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, 060042, Romania
| | - George A. Stanciu
- Center
for Microscopy-Microanalysis and Information Processing, Politehnica University of Bucharest, Bucharest, 060042, Romania
| | - Xinzhong Chen
- Department
of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, United States
| | - Mengkun Liu
- Department
of Physics and Astronomy, Stony Brook University, Stony Brook, New York 11794, United States
- National
Synchrotron Light Source II, Brookhaven National Laboratory, Upton, New York 11973, United States
| | - Harald A. Stenmark
- Department
of Molecular Cell Biology, Institute for Cancer Research, Oslo University Hospital, Oslo 0379, Norway
| | - Loredana Latterini
- Department
of Chemistry, Biology and Biotechnology, Perugia University, Via Elce di sotto, 8, 06123 Perugia, Italy
| |
Collapse
|
10
|
Ghasemlou M, Mayes ELH, Murdoch BJ, Le PH, Dekiwadia C, Aburto-Medina A, Daver F, Ivanova EP, Adhikari B. Silicon-Doped Graphene Oxide Quantum Dots as Efficient Nanoconjugates for Multifunctional Nanocomposites. ACS APPLIED MATERIALS & INTERFACES 2022; 14:7161-7174. [PMID: 35076220 DOI: 10.1021/acsami.1c22208] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Graphene oxide quantum dots (GOQDs) hold great promise as a new class of high-performance carbonaceous nanomaterials due to their numerous functional properties, such as tunable photoluminescence (PL), excellent thermal and chemical stability, and superior biocompatibility. In this study, we developed a facile, one-pot, and effective strategy to engineer the interface of GOQDs through covalent doping with silicon. The successful covalent attachment of the silane dopant with pendant vinyl groups to the edges of the GOQDs was confirmed by an in-depth investigation of the structural and morphological characteristics. The Si-GOQD nanoconjugates had an average dimension of ∼8 nm, with a graphite-structured core and amorphous carbon on their shell. We further used the infrared nanoimaging based on scattering-type scanning near-field optical microscopy to unveil the spectral near-field response of GOQD samples and to measure the nanoscale IR response of its network; we then demonstrated their distinct domains with strongly enhanced near fields. The doping of Si atoms into the sp2-hybridized graphitic framework of GOQDs also led to tailored PL emissions. We then sought to explore the potential applications of Si-GOQDs on the surface of plastic films where poly(dimethylsiloxane) (PDMS) served as a bridge to tightly anchor the Si-GOQDs to the surface. The bi-layered coated films which were built with co-assembly of Si-GOQDs and PDMS contributed to suppressing the transmission of water molecules due to the generation of compact and less accessible passing sites, achieving a nearly twofold reduction in water permeability compared to the single-layered coated films. The nanoindentation and PeakForce quantitative nanomechanical mapping showed that Si-GOQD-coated substrates were softer and more deformable than those coated only with PDMS. The co-assembly of PDMS and Si-GOQDs yielded films that were less stiff than those made from PDMS alone. Our findings provided conceptual insights into the importance of nanoscale surface engineering of GOQDs in conferring excellent dispersibility and enhancing the performance of nanocomposite films.
Collapse
Affiliation(s)
- Mehran Ghasemlou
- School of Science, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Edwin L H Mayes
- RMIT Microscopy and Microanalysis Facility, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Billy J Murdoch
- RMIT Microscopy and Microanalysis Facility, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Phuc H Le
- School of Science, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Chaitali Dekiwadia
- RMIT Microscopy and Microanalysis Facility, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Arturo Aburto-Medina
- School of Science, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Fugen Daver
- School of Engineering, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Elena P Ivanova
- School of Science, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| | - Benu Adhikari
- School of Science, STEM College, RMIT University, Melbourne, Victoria 3000, Australia
| |
Collapse
|
11
|
Wang H, Xie Q, Xu XG. Super-resolution mid-infrared spectro-microscopy of biological applications through tapping mode and peak force tapping mode atomic force microscope. Adv Drug Deliv Rev 2022; 180:114080. [PMID: 34906646 DOI: 10.1016/j.addr.2021.114080] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 11/15/2021] [Accepted: 12/06/2021] [Indexed: 11/19/2022]
Abstract
Small biomolecules at the subcellular level are building blocks for the manifestation of complex biological activities. However, non-intrusive in situ investigation of biological systems has been long daunted by the low spatial resolution and poor sensitivity of conventional light microscopies. Traditional infrared (IR) spectro-microscopy can enable label-free visualization of chemical bonds without extrinsic labeling but is still bound by Abbe's diffraction limit. This review article introduces a way to bypass the optical diffraction limit and improve the sensitivity for mid-IR methods - using tip-enhanced light nearfield in atomic force microscopy (AFM) operated in tapping and peak force tapping modes. Working principles of well-established scattering-type scanning near-field optical microscopy (s-SNOM) and two relatively new techniques, namely, photo-induced force microscopy (PiFM) and peak force infrared (PFIR) microscopy, will be briefly presented. With ∼ 10-20 nm spatial resolution and monolayer sensitivity, their recent applications in revealing nanoscale chemical heterogeneities in a wide range of biological systems, including biomolecules, cells, tissues, and biomaterials, will be reviewed and discussed. We also envision several future improvements of AFM-based tapping and peak force tapping mode nano-IR methods that permit them to better serve as a versatile platform for uncovering biological mechanisms at the fundamental level.
Collapse
Affiliation(s)
- Haomin Wang
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA
| | - Qing Xie
- Department of Chemistry, Lehigh University, Bethlehem, PA 18015, USA
| | - Xiaoji G Xu
- Department of Chemistry, Lehigh University, Bethlehem, PA 18015, USA.
| |
Collapse
|
12
|
|
13
|
Arble C, Guo H, Matruglio A, Gianoncelli A, Vaccari L, Birarda G, Kolmakov A. Addressable graphene encapsulation of wet specimens on a chip for optical, electron, infrared and X-ray based spectromicroscopy studies. LAB ON A CHIP 2021; 21:4618-4628. [PMID: 34679149 DOI: 10.1039/d1lc00440a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Label-free spectromicroscopy methods offer the capability to examine complex cellular phenomena. Electron and X-ray based spectromicroscopy methods, though powerful, have been hard to implement with hydrated objects due to the vacuum incompatibility of the samples and due to the parasitic signals from (or drastic attenuation by) the liquid matrix surrounding the biological object of interest. Similarly, for many techniques that operate at ambient pressure, such as Fourier transform infrared spectromicroscopy (FTIRM), the aqueous environment imposes severe limitations due to the strong absorption of liquid water in the infrared regime. Here we propose a microfabricated multi-compartmental and reusable hydrated sample platform suitable for use with several analytical techniques, which employs the conformal encapsulation of biological specimens by a few layers of atomically thin graphene. Such an electron, X-ray, and infrared transparent, molecularly impermeable and mechanically robust enclosure preserves the hydrated environment around the object for a sufficient time to allow in situ examination of hydrated bio-objects with techniques operating under both ambient and high vacuum conditions. An additional hydration source, provided by hydrogel pads lithographically patterned in the liquid state near/around the specimen and co-encapsulated, has been added to further extend the hydration lifetime. Note that the in-liquid lithographic electron beam-induced gelation procedure allows for addressable capture and immobilization of the biological cells from the solution. Scanning electron microscopy and optical fluorescence microscopy, as well as synchrotron radiation based FTIR and X-ray fluorescence microscopy, have been used to test the applicability of the platform and for its validation with yeast, A549 human carcinoma lung cells and micropatterned gels as biological object phantoms.
Collapse
Affiliation(s)
- Christopher Arble
- Physical Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
| | - Hongxuan Guo
- SEU-FEI Nano-Pico Center, Key Laboratory of MEMS of Ministry of Education, Southeast University, Nanjing 210096, P. R. China
| | - Alessia Matruglio
- CERIC-ERIC (Central European Research Infrastructure Consortium), S.S. 14 Km 163,4 in Area Science Park, 34149, Basovizza, Trieste, Italy
| | - Alessandra Gianoncelli
- Elettra Sincrotrone Trieste S.C.p.A, S.S. 14 Km 163,4 in Area Science Park, 34149, Basovizza, Trieste, Italy
| | - Lisa Vaccari
- Elettra Sincrotrone Trieste S.C.p.A, S.S. 14 Km 163,4 in Area Science Park, 34149, Basovizza, Trieste, Italy
| | - Giovanni Birarda
- Elettra Sincrotrone Trieste S.C.p.A, S.S. 14 Km 163,4 in Area Science Park, 34149, Basovizza, Trieste, Italy
| | - Andrei Kolmakov
- Physical Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD 20899, USA.
| |
Collapse
|
14
|
Infrared-spectroscopic, dynamic near-field microscopy of living cells and nanoparticles in water. Sci Rep 2021; 11:21860. [PMID: 34750511 PMCID: PMC8576021 DOI: 10.1038/s41598-021-01425-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2021] [Accepted: 10/26/2021] [Indexed: 11/17/2022] Open
Abstract
Infrared fingerprint spectra can reveal the chemical nature of materials down to 20-nm detail, far below the diffraction limit, when probed by scattering-type scanning near-field optical microscopy (s-SNOM). But this was impossible with living cells or aqueous processes as in corrosion, due to water-related absorption and tip contamination. Here, we demonstrate infrared s-SNOM of water-suspended objects by probing them through a 10-nm thick SiN membrane. This separator stretches freely over up to 250 µm, providing an upper, stable surface to the scanning tip, while its lower surface is in contact with the liquid and localises adhering objects. We present its proof-of-principle applicability in biology by observing simply drop-casted, living E. coli in nutrient medium, as well as living A549 cancer cells, as they divide, move and develop rich sub-cellular morphology and adhesion patterns, at 150 nm resolution. Their infrared spectra reveal the local abundances of water, proteins, and lipids within a depth of ca. 100 nm below the SiN membrane, as we verify by analysing well-defined, suspended polymer spheres and through model calculations. SiN-membrane based s-SNOM thus establishes a novel tool of live cell nano-imaging that returns structure, dynamics and chemical composition. This method should benefit the nanoscale analysis of any aqueous system, from physics to medicine.
Collapse
|
15
|
Teng P, Gao D, Yang X, Luo M, Kong D, Gao S, Liu Z, Li Z, Wen X, Yuan L, Li K, Bowkett M, Copner N. In situ SERS detection of quinolone antibiotic residues in a water environment based on optofluidic in-fiber integrated Ag nanoparticles. APPLIED OPTICS 2021; 60:6659-6664. [PMID: 34612910 DOI: 10.1364/ao.426611] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2021] [Accepted: 06/28/2021] [Indexed: 06/13/2023]
Abstract
In this paper, we present a microstructured optofluidic in-fiber Raman sensor for the detection of quinolone antibiotic residue in a water environment based on Ag surface-enhanced Raman scattering (SERS) substrate grown on the surface of the suspended core of micro-hollow optical fiber (MHF). Here, MHF has a special structure with a suspended core and a microchannel inside, which can become a natural in-fiber optofluidic device. Meanwhile, the self-assembled Ag SERS substrate can be grown on the suspended core's surface through chemical bonds, forming a microstructured optofluidic device with a Raman enhancement effect. Therefore, it can effectively detect the Raman signal of unlabeled trace quinolone antibiotic residue (ciprofloxacin and norfloxacin) inside the optical fiber. The results show that the ciprofloxacin and norfloxacin detection limits (LOD) are 10-10M and 10-11M, respectively. Compared with the maximum residue limit (3.01×10-7mol/L) stipulated by the European Union, the results are much lower, and an ideal quantitative relationship can be obtained within the detection range. Significantly, this study provides an in-fiber microstructured optofluidic Raman sensor for the label-free detection of quinolone antibiotic residue, which will have good development prospects in the field of antibiotic water pollution environmental detection.
Collapse
|
16
|
Verification of water presence in graphene liquid cells. Micron 2021; 149:103109. [PMID: 34332298 DOI: 10.1016/j.micron.2021.103109] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2021] [Revised: 06/28/2021] [Accepted: 06/28/2021] [Indexed: 12/24/2022]
Abstract
Graphene liquid cells (GLCs) present the thinnest possible sample enclosures for liquid phase electron microscopy. However, the actual presence of liquid within a GLC is not always guaranteed. Of key importance is to reliably test the presence of the liquid, which is most frequently water or saline. Here, the commonly used methods for verifying the presence of water were evaluated. It is shown that depending on the type of sample, applying a single criterion does not always conclusively verify the presence of water. Testing liquid filling for a specific GLC sample preparation protocol should thus be considered critically. The most reliable method is direct observation of the water exciton peak using electron energy loss spectroscopy (EELS). But if this method cannot be carried out, water filling of the GLC can be verified from a combination of higher contrast in the image, the presence of bubbles, and an oxygen signal in the EEL spectrum, which can be accomplished at a high electron dose in spot mode. Nanoparticle movement does not always occur in a GLC.
Collapse
|
17
|
Nanophotonic biosensors harnessing van der Waals materials. Nat Commun 2021; 12:3824. [PMID: 34158483 PMCID: PMC8219843 DOI: 10.1038/s41467-021-23564-4] [Citation(s) in RCA: 52] [Impact Index Per Article: 17.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2020] [Accepted: 04/16/2021] [Indexed: 02/07/2023] Open
Abstract
Low-dimensional van der Waals (vdW) materials can harness tightly confined polaritonic waves to deliver unique advantages for nanophotonic biosensing. The reduced dimensionality of vdW materials, as in the case of two-dimensional graphene, can greatly enhance plasmonic field confinement, boosting sensitivity and efficiency compared to conventional nanophotonic devices that rely on surface plasmon resonance in metallic films. Furthermore, the reduction of dielectric screening in vdW materials enables electrostatic tunability of different polariton modes, including plasmons, excitons, and phonons. One-dimensional vdW materials, particularly single-walled carbon nanotubes, possess unique form factors with confined excitons to enable single-molecule detection as well as in vivo biosensing. We discuss basic sensing principles based on vdW materials, followed by technological challenges such as surface chemistry, integration, and toxicity. Finally, we highlight progress in harnessing vdW materials to demonstrate new sensing functionalities that are difficult to perform with conventional metal/dielectric sensors. This review presents an overview of scenarios where van der Waals (vdW) materials provide unique advantages for nanophotonic biosensing applications. The authors discuss basic sensing principles based on vdW materials, advantages of the reduced dimensionality as well as technological challenges.
Collapse
|
18
|
Virmani D, Bylinkin A, Dolado I, Janzen E, Edgar JH, Hillenbrand R. Amplitude- and Phase-Resolved Infrared Nanoimaging and Nanospectroscopy of Polaritons in a Liquid Environment. NANO LETTERS 2021; 21:1360-1367. [PMID: 33511844 DOI: 10.1021/acs.nanolett.0c04108] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Polaritons allow for strong light-matter coupling and for highly sensitive analysis of (bio)chemical substances and processes. Nanoimaging of the polaritons' evanescent fields is critically important for experimental mode identification and field confinement studies. Here we describe two setups for polariton nanoimaging and spectroscopy in liquid. We first demonstrate the mapping of localized plasmon polaritons in metal antennas with a transflection infrared scattering-type scanning near-field optical microscope (s-SNOM), where the tip acts as a near-field scattering probe. We then demonstrate a total internal reflection (TIR)-based setup, where the tip is both launching and probing ultraconfined polaritons in van der Waals materials (here phonon polaritons in hexagonal boron nitride flakes), laying the foundation for s-SNOM-based polariton interferometry in liquid. Our results promise manifold applications, for example, in situ studies of strong coupling between polaritons and molecular vibrations or chemical reactions at the bare or functionalized surfaces of polaritonic materials.
Collapse
Affiliation(s)
- Divya Virmani
- CIC nanoGUNE BRTA, Tolosa Hiribidea 76, 20018 Donostia-San Sebastián, Spain
| | - Andrei Bylinkin
- CIC nanoGUNE BRTA, Tolosa Hiribidea 76, 20018 Donostia-San Sebastián, Spain
| | - Irene Dolado
- CIC nanoGUNE BRTA, Tolosa Hiribidea 76, 20018 Donostia-San Sebastián, Spain
| | - Eli Janzen
- Kansas State University, Tim Taylor Department of Chemical Engineering, Durland Hall, Manhattan, Kansas 66506, United States
| | - James H Edgar
- Kansas State University, Tim Taylor Department of Chemical Engineering, Durland Hall, Manhattan, Kansas 66506, United States
| | - Rainer Hillenbrand
- CIC nanoGUNE BRTA and Department of Electricity and Electronics, UPV/EHU, Tolosa Hiribidea 76, 20018 Donostia-San Sebastián, Spain
- IKERBASQUE, Basque Foundation for Science, 48009 Bilbao, Spain
| |
Collapse
|
19
|
Ménard-Moyon C, Bianco A, Kalantar-Zadeh K. Two-Dimensional Material-Based Biosensors for Virus Detection. ACS Sens 2020; 5:3739-3769. [PMID: 33226779 DOI: 10.1021/acssensors.0c01961] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Viral infections are one of the major causes of mortality and economic losses worldwide. Consequently, efficient virus detection methods are crucial to determine the infection prevalence. However, most detection methods face challenges related to false-negative or false-positive results, long response times, high costs, and/or the need for specialized equipment and staff. Such issues can be overcome by access to low-cost and fast response point-of-care detection systems, and two-dimensional materials (2DMs) can play a critical role in this regard. Indeed, the unique and tunable physicochemical properties of 2DMs provide many advantages for developing biosensors for viral infections with high sensitivity and selectivity. Fast, accurate, and reliable detection, even at early infection stages by the virus, can be potentially enabled by highly accessible surface interactions between the 2DMs and the analytes. High selectivity can be obtained by functionalization of the 2DMs with antibodies, nucleic acids, proteins, peptides, or aptamers, allowing for specific binding to a particular virus, viral fingerprints, or proteins released by the host organism. Multiplexed detection and discrimination between different virus strains are also feasible. In this Review, we present a comprehensive overview of the major advances of 2DM-based biosensors for the detection of viruses. We describe the main factors governing the efficient interactions between viruses and 2DMs, making them ideal candidates for the detection of viral infections. We also critically detail their advantages and drawbacks, providing insights for the development of future biosensors for virus detection. Lastly, we provide suggestions to stimulate research in the fast expanding field of 2DMs that could help in designing advanced systems for preventing virus-related pandemics.
Collapse
Affiliation(s)
- Cécilia Ménard-Moyon
- CNRS, Immunology, Immunopathology and Therapeutic Chemistry, UPR3572, University of Strasbourg, ISIS, Strasbourg 67000, France
| | - Alberto Bianco
- CNRS, Immunology, Immunopathology and Therapeutic Chemistry, UPR3572, University of Strasbourg, ISIS, Strasbourg 67000, France
| | - Kourosh Kalantar-Zadeh
- School of Chemical Engineering, University of New South Wales, Kensington, New South Wales 2052, Australia
| |
Collapse
|
20
|
Lucidi M, Tranca DE, Nichele L, Ünay D, Stanciu GA, Visca P, Holban AM, Hristu R, Cincotti G, Stanciu SG. SSNOMBACTER: A collection of scattering-type scanning near-field optical microscopy and atomic force microscopy images of bacterial cells. Gigascience 2020; 9:giaa129. [PMID: 33231675 PMCID: PMC7684706 DOI: 10.1093/gigascience/giaa129] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 10/20/2020] [Accepted: 10/27/2020] [Indexed: 11/14/2022] Open
Abstract
BACKGROUND In recent years, a variety of imaging techniques operating at nanoscale resolution have been reported. These techniques have the potential to enrich our understanding of bacterial species relevant to human health, such as antibiotic-resistant pathogens. However, owing to the novelty of these techniques, their use is still confined to addressing very particular applications, and their availability is limited owing to associated costs and required expertise. Among these, scattering-type scanning near field optical microscopy (s-SNOM) has been demonstrated as a powerful tool for exploring important optical properties at nanoscale resolution, depending only on the size of a sharp tip. Despite its huge potential to resolve aspects that cannot be tackled otherwise, the penetration of s-SNOM into the life sciences is still proceeding at a slow pace for the aforementioned reasons. RESULTS In this work we introduce SSNOMBACTER, a set of s-SNOM images collected on 15 bacterial species. These come accompanied by registered Atomic Force Microscopy images, which are useful for placing nanoscale optical information in a relevant topographic context. CONCLUSIONS The proposed dataset aims to augment the popularity of s-SNOM and for accelerating its penetration in life sciences. Furthermore, we consider this dataset to be useful for the development and benchmarking of image analysis tools dedicated to s-SNOM imaging, which are scarce, despite the high need. In this latter context we discuss a series of image processing and analysis applications where SSNOMBACTER could be of help.
Collapse
Affiliation(s)
- Massimiliano Lucidi
- University Roma Tre, Department of Engineering, via Vito Volterra 62, Rome, 00146, Italy
| | - Denis E Tranca
- University Politehnica of Bucharest, Center for Microscopy-Microanalysis and Information Processing, 313 Splaiul Independentei, Bucharest,060042, Romania
| | - Lorenzo Nichele
- University Roma Tre, Department of Engineering, via Vito Volterra 62, Rome, 00146, Italy
| | - Devrim Ünay
- İzmir Democracy University, Faculty of Engineering, Electrical and Electronics Engineering, 14 Gürsel Aksel Bulvarı, İzmir, 35140, Turkey
| | - George A Stanciu
- University Politehnica of Bucharest, Center for Microscopy-Microanalysis and Information Processing, 313 Splaiul Independentei, Bucharest,060042, Romania
| | - Paolo Visca
- University Roma Tre, Department of Science, via Vito Volterra 62, Rome, 00146, Italy
| | - Alina Maria Holban
- University of Bucharest, Faculty of Biology, Department of Microbiology and Immunology, 1-3 Aleea Portocalelor, Bucharest, 060101, Romania
| | - Radu Hristu
- University Politehnica of Bucharest, Center for Microscopy-Microanalysis and Information Processing, 313 Splaiul Independentei, Bucharest,060042, Romania
| | - Gabriella Cincotti
- University Roma Tre, Department of Engineering, via Vito Volterra 62, Rome, 00146, Italy
| | - Stefan G Stanciu
- University Politehnica of Bucharest, Center for Microscopy-Microanalysis and Information Processing, 313 Splaiul Independentei, Bucharest,060042, Romania
| |
Collapse
|
21
|
Pfitzner E, Heberle J. Infrared Scattering-Type Scanning Near-Field Optical Microscopy of Biomembranes in Water. J Phys Chem Lett 2020; 11:8183-8188. [PMID: 32897725 DOI: 10.1021/acs.jpclett.0c01769] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Infrared (IR) absorption spectroscopy detects the state and chemical composition of biomolecules solely by their inherent vibrational fingerprints. Major disadvantages like the lack of spatial resolution and sensitivity have lately been overcome by the use of pointed probes as local sensors enabling the detection of quantities as few as hundreds of proteins with nanometer precision. However, the strong absorption of infrared radiation by liquid water still prevents simple access to the measured quantity: the light scattered at the probing atomic force microscope tip. Here we report on the local IR response of biological membranes immersed in aqueous bulk solution. We make use of a silicon solid immersion lens as the substrate and focusing optics to achieve detection efficiencies sufficient to yield IR near-field maps of purple membranes. Finally, we suggest a means to improve the imaging quality by tracing the tip by a laser-scanning approach.
Collapse
Affiliation(s)
- Emanuel Pfitzner
- Experimental Molecular Biophysics, Department of Physics, Freie Universität Berlin, 14195 Berlin, Germany
| | - Joachim Heberle
- Experimental Molecular Biophysics, Department of Physics, Freie Universität Berlin, 14195 Berlin, Germany
| |
Collapse
|
22
|
O'Callahan BT, Park KD, Novikova IV, Jian T, Chen CL, Muller EA, El-Khoury PZ, Raschke MB, Lea AS. In Liquid Infrared Scattering Scanning Near-Field Optical Microscopy for Chemical and Biological Nanoimaging. NANO LETTERS 2020; 20:4497-4504. [PMID: 32356991 DOI: 10.1021/acs.nanolett.0c01291] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Imaging biological systems with simultaneous intrinsic chemical specificity and nanometer spatial resolution in their typical native liquid environment has remained a long-standing challenge. Here, we demonstrate a general approach of chemical nanoimaging in liquid based on infrared scattering scanning near-field optical microscopy (IR s-SNOM). It is enabled by combining AFM operation in a fluid cell with evanescent IR illumination via total internal reflection, which provides spatially confined excitation for minimized IR water absorption, reduced far-field background, and enhanced directional signal emission and sensitivity. We demonstrate in-liquid IR s-SNOM vibrational nanoimaging and conformational identification of catalase nanocrystals and spatio-spectral analysis of biomimetic peptoid sheets with monolayer sensitivity and chemical specificity at the few zeptomole level. This work establishes the principles of in-liquid and in situ IR s-SNOM spectroscopic chemical nanoimaging and its general applicability to biomolecular, cellular, catalytic, electrochemical, or other interfaces and nanosystems in liquids or solutions.
Collapse
Affiliation(s)
| | - Kyoung-Duck Park
- Department of Physics, School of Natural Science, Ulsan National Institute of Science and Technology (UNIST), Ulsan 44919, Republic of Korea
| | | | | | | | - Eric A Muller
- Department of Physics, Department of Chemistry, and JILA, University of Colorado at Boulder, Boulder, Colorado 80309, United States
| | | | - Markus B Raschke
- Department of Physics, Department of Chemistry, and JILA, University of Colorado at Boulder, Boulder, Colorado 80309, United States
| | | |
Collapse
|
23
|
Wang H, Janzen E, Wang L, Edgar JH, Xu XG. Probing Mid-Infrared Phonon Polaritons in the Aqueous Phase. NANO LETTERS 2020; 20:3986-3991. [PMID: 32320254 DOI: 10.1021/acs.nanolett.0c01199] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Phonon polaritons (PhPs) are collective phonon oscillations with hybridized electromagnetic fields, which concentrate mid-infrared optical fields that can match molecular vibrations. The utilization of PhPs holds the promise for chemical sensing tools and polariton-enhanced nanospectroscopy. However, investigations and innovations on PhPs in the aqueous phase remain stagnant because of the lack of in situ mid-infrared nanoimaging methods in water. Strong infrared absorption from water prohibits optical delivery and detection in the mid-infrared for scattering-type near-field microscopy. Here, we present our solution: the detection of photothermal responses caused by the excitation of PhPs by liquid phase peak force infrared (LiPFIR) microscopy. Characteristic interference fringes of PhPs in 10B isotope-enriched h-BN were measured in the aqueous phase and their dispersion relationship extracted. LiPFIR enables the measurement of mid-infrared PhPs in the fluid phase, opening possibilities and facilitating the development of mid-IR phonon polaritonics in water.
Collapse
Affiliation(s)
- Haomin Wang
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - Eli Janzen
- Tim Taylor Department of Chemical Engineering, Kansas State University, Durland Hall, Manhattan, Kansas 66506, United States
| | - Le Wang
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - James H Edgar
- Tim Taylor Department of Chemical Engineering, Kansas State University, Durland Hall, Manhattan, Kansas 66506, United States
| | - Xiaoji G Xu
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| |
Collapse
|
24
|
Strelcov E, Arble C, Guo H, Hoskins BD, Yulaev A, Vlassiouk IV, Zhitenev NB, Tselev A, Kolmakov A. Nanoscale Mapping of the Double Layer Potential at the Graphene-Electrolyte Interface. NANO LETTERS 2020; 20:1336-1344. [PMID: 31990570 DOI: 10.1021/acs.nanolett.9b04823] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
The electrical double layer (EDL) governs the operation of multiple electrochemical devices, determines reaction potentials, and conditions ion transport through cellular membranes in living organisms. The few existing methods of EDL probing have low spatial resolution, usually only providing spatially averaged information. On the other hand, traditional Kelvin probe force microscopy (KPFM) is capable of mapping potential with nanoscale lateral resolution but cannot be used in electrolytes with concentrations higher than several mmol/L. Here, we resolve this experimental impediment by combining KPFM with graphene-capped electrolytic cells to quantitatively measure the potential drop across the EDL in aqueous electrolytes of decimolar and molar concentrations with a high lateral resolution. The surface potential of graphene in contact with deionized water and 0.1 mol/L solutions of CuSO4 and MgSO4 as a function of counter electrode voltage is reported. The measurements are supported by numerical modeling to reveal the role of the graphene membrane in potential screening and to determine the EDL potential drop. The proposed approach proves to be especially useful for imaging spatially inhomogeneous systems, such as nanoparticles submerged in an electrolyte solution. It could be suitable for in operando and in vivo measurements of the potential drop in the EDL on the surfaces of nanocatalysts and biological cells in equilibrium with liquid solutions.
Collapse
Affiliation(s)
- Evgheni Strelcov
- Physical Measurement Laboratory , National Institute of Standards and Technology , Gaithersburg , Maryland 20899 , United States
- Maryland NanoCenter , University of Maryland , College Park , Maryland 20742 , United States
| | - Christopher Arble
- Physical Measurement Laboratory , National Institute of Standards and Technology , Gaithersburg , Maryland 20899 , United States
| | - Hongxuan Guo
- SEU-FEI Nano-Pico Center, Key Laboratory of MEMS of Ministry of Education , Southeast University , Nanjing 210096 , China
| | - Brian D Hoskins
- Physical Measurement Laboratory , National Institute of Standards and Technology , Gaithersburg , Maryland 20899 , United States
| | - Alexander Yulaev
- Physical Measurement Laboratory , National Institute of Standards and Technology , Gaithersburg , Maryland 20899 , United States
- Department of Chemistry and Biochemistry , University of Maryland , College Park , Maryland 20742 , United States
| | - Ivan V Vlassiouk
- Oak Ridge National Laboratory , Oak Ridge , Tennessee 37830 , United States
| | - Nikolai B Zhitenev
- Physical Measurement Laboratory , National Institute of Standards and Technology , Gaithersburg , Maryland 20899 , United States
| | - Alexander Tselev
- Department of Physics and CICECO-Aveiro Institute of Materials , University of Aveiro , 3810-193 Aveiro , Portugal
| | - Andrei Kolmakov
- Physical Measurement Laboratory , National Institute of Standards and Technology , Gaithersburg , Maryland 20899 , United States
| |
Collapse
|
25
|
Quaroni L. Characterization of Intact Eukaryotic Cells with Subcellular Spatial Resolution by Photothermal-Induced Resonance Infrared Spectroscopy and Imaging. Molecules 2019; 24:E4504. [PMID: 31835358 PMCID: PMC6943681 DOI: 10.3390/molecules24244504] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2019] [Accepted: 12/03/2019] [Indexed: 12/14/2022] Open
Abstract
Photothermal-induced resonance (PTIR) spectroscopy and imaging with infrared light has seen increasing application in the molecular spectroscopy of biological samples. The appeal of the technique lies in its capability to provide information about IR light absorption at a spatial resolution better than that allowed by light diffraction, typically below 100 nm. In the present work, we tested the capability of the technique to perform measurements with subcellular resolution on intact eukaryotic cells, without drying or fixing. We demonstrate the possibility of obtaining PTIR images and spectra from the nucleus and multiple organelles with high resolution, better than that allowed by diffraction with infrared light. We obtain particularly strong signal from bands typically assigned to acyl lipids and proteins. We also show that while a stronger signal is obtained from some subcellular structures, other large subcellular components provide a weaker or undetectable PTIR response. The mechanism that underlies such variability in response is presently unclear. We propose and discuss different possibilities, addressing thermomechanical, geometrical, and electrical properties of the sample and the presence of cellular water, from which the difference in response may arise.
Collapse
Affiliation(s)
- Luca Quaroni
- Faculty of Chemistry, Jagiellonian University, ul. Gronostajowa 2, 30-387 Kraków, Poland; ; Tel.: +48-12-6862520
- Institute of Nuclear Physics, Polish Academy of Sciences, ul. Radzikowskiego 152, 31-342 Kraków, Poland
| |
Collapse
|
26
|
Infrared nano-spectroscopy of ferroelastic domain walls in hybrid improper ferroelectric Ca 3Ti 2O 7. Nat Commun 2019; 10:5235. [PMID: 31748506 PMCID: PMC6868197 DOI: 10.1038/s41467-019-13066-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2019] [Accepted: 10/07/2019] [Indexed: 02/01/2023] Open
Abstract
Ferroic materials are well known to exhibit heterogeneity in the form of domain walls. Understanding the properties of these boundaries is crucial for controlling functionality with external stimuli and for realizing their potential for ultra-low power memory and logic devices as well as novel computing architectures. In this work, we employ synchrotron-based near-field infrared nano-spectroscopy to reveal the vibrational properties of ferroelastic (90\documentclass[12pt]{minimal}
\usepackage{amsmath}
\usepackage{wasysym}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{amsbsy}
\usepackage{mathrsfs}
\usepackage{upgreek}
\setlength{\oddsidemargin}{-69pt}
\begin{document}$${}^{\circ }$$\end{document}∘ ferroelectric) domain walls in the hybrid improper ferroelectric Ca\documentclass[12pt]{minimal}
\usepackage{amsmath}
\usepackage{wasysym}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{amsbsy}
\usepackage{mathrsfs}
\usepackage{upgreek}
\setlength{\oddsidemargin}{-69pt}
\begin{document}$${}_{3}$$\end{document}3Ti\documentclass[12pt]{minimal}
\usepackage{amsmath}
\usepackage{wasysym}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{amsbsy}
\usepackage{mathrsfs}
\usepackage{upgreek}
\setlength{\oddsidemargin}{-69pt}
\begin{document}$${}_{2}$$\end{document}2O\documentclass[12pt]{minimal}
\usepackage{amsmath}
\usepackage{wasysym}
\usepackage{amsfonts}
\usepackage{amssymb}
\usepackage{amsbsy}
\usepackage{mathrsfs}
\usepackage{upgreek}
\setlength{\oddsidemargin}{-69pt}
\begin{document}$${}_{7}$$\end{document}7. By locally mapping the Ti-O stretching and Ti-O-Ti bending modes, we reveal how structural order parameters rotate across a wall. Thus, we link observed near-field amplitude changes to underlying structural modulations and test ferroelectric switching models against real space measurements of local structure. This initiative opens the door to broadband infrared nano-imaging of heterogeneity in ferroics. Ferroic domain walls are nano-objects that are considered functional elements in future devices. Here, the authors study phonons across ferroelastic domain walls by synchrotron-based near-field infrared nano-spectroscopy and relate these changes to the order parameter which helps to understand domain wall dynamics.
Collapse
|
27
|
Meireles LM, Barcelos ID, Ferrari GA, de A Neves PAA, Freitas RO, Lacerda RG. Synchrotron infrared nanospectroscopy on a graphene chip. LAB ON A CHIP 2019; 19:3678-3684. [PMID: 31570906 DOI: 10.1039/c9lc00686a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
A recurring goal in biology and biomedicine research is to access the biochemistry of biological processes in liquids that represent the environmental conditions of living organisms. These demands are becoming even more specific as microscopy techniques are fast evolving in the era of single cell analysis. In the modality of chemical probes, synchrotron infrared spectroscopy (μ-FTIR) is a technique that is extremely sensitive to vibrational responses of materials; however, the classical optical limits prevent the technique to access the biochemistry of specimens at the subcellular level. In addition, due to the intricate environmental requirements and strong infrared absorption of water, μ-FTIR of bioprocesses in liquids remains highly challenging. In phase with these challenges, on-chip liquid cells emerge as a versatile alternative to control the water thickness while providing a biocompatible chemical environment for analytical analyses. In this work we report the development of a liquid platform specially designed for nanoscale infrared analysis of biomaterials in wet environments. A key advantage of our designed platform is the use of graphene as an optical window that interfaces wet and dry environments in the liquid cell. By combining near-field optical microscopy and synchrotron infrared radiation, we measure the nanoscale fingerprint IR absorbance of a variety of liquids often used in biological studies. Further, we demonstrate the feasibility of the platform for the chemical analysis of protein clusters immersed in water with a clear view of the proteins' secondary structure signatures. The simplicity of the proposed platform combined with the high quality of our data makes our findings a template for future microfluidic devices targeting dynamic nanoscale-resolved chemical analysis.
Collapse
Affiliation(s)
- Leonel M Meireles
- University of Minas Gerais (UFMG), 30123-970, Belo Horizonte, Minas Gerais, Brazil.
| | - Ingrid D Barcelos
- Brazilian Synchrotron Light Laboratory (LNLS), Brazilian Center for Research in Energy and Materials (CNPEM), Zip Code, 13083-970, Campinas, Sao Paulo, Brazil.
| | - Gustavo A Ferrari
- University of Minas Gerais (UFMG), 30123-970, Belo Horizonte, Minas Gerais, Brazil.
| | - Paulo Alexandre A de A Neves
- Department of Biochemistry and Department of Physics, Federal University of Minas Gerais (UFMG), 30123-970, Belo Horizonte, Minas Gerais, Brazil
| | - Raul O Freitas
- Brazilian Synchrotron Light Laboratory (LNLS), Brazilian Center for Research in Energy and Materials (CNPEM), Zip Code, 13083-970, Campinas, Sao Paulo, Brazil.
| | - Rodrigo G Lacerda
- University of Minas Gerais (UFMG), 30123-970, Belo Horizonte, Minas Gerais, Brazil.
| |
Collapse
|
28
|
Lu YH, Larson JM, Baskin A, Zhao X, Ashby PD, Prendergast D, Bechtel HA, Kostecki R, Salmeron M. Infrared Nanospectroscopy at the Graphene-Electrolyte Interface. NANO LETTERS 2019; 19:5388-5393. [PMID: 31306028 DOI: 10.1021/acs.nanolett.9b01897] [Citation(s) in RCA: 39] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We present a new methodology that enables studies of the molecular structure of graphene-liquid interfaces with nanoscale spatial resolution. It is based on Fourier transform infrared nanospectroscopy (nano-FTIR), where the infrared (IR) field is plasmonically enhanced near the tip apex of an atomic force microscope (AFM). The graphene seals a liquid electrolyte reservoir while acting also as a working electrode. The photon transparency of graphene enables IR spectroscopy studies of its interface with liquids, including water, propylene carbonate, and aqueous ammonium sulfate electrolyte solutions. We illustrate the method by comparing IR spectra obtained by nano-FTIR and attenuated total reflection (which has a detection depth of a few microns) demonstrating that the nano-FTIR method makes it possible to determine changes in speciation and ion concentration in the electric double and diffuse layers as a function of bias.
Collapse
Affiliation(s)
| | | | | | - Xiao Zhao
- Department of Materials Science and Engineering , University of California at Berkeley , Berkeley , California 94720 , United States
| | | | | | - Hans A Bechtel
- Advanced Light Source , Lawrence Berkeley National Laboratory , Berkeley , California 94720 , United States
| | | | - Miquel Salmeron
- Department of Materials Science and Engineering , University of California at Berkeley , Berkeley , California 94720 , United States
| |
Collapse
|
29
|
Chen X, Hu D, Mescall R, You G, Basov DN, Dai Q, Liu M. Modern Scattering-Type Scanning Near-Field Optical Microscopy for Advanced Material Research. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2019; 31:e1804774. [PMID: 30932221 DOI: 10.1002/adma.201804774] [Citation(s) in RCA: 85] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2018] [Revised: 02/27/2019] [Indexed: 05/27/2023]
Abstract
Infrared and optical spectroscopy represents one of the most informative methods in advanced materials research. As an important branch of modern optical techniques that has blossomed in the past decade, scattering-type scanning near-field optical microscopy (s-SNOM) promises deterministic characterization of optical properties over a broad spectral range at the nanoscale. It allows ultrabroadband optical (0.5-3000 µm) nanoimaging, and nanospectroscopy with fine spatial (<10 nm), spectral (<1 cm-1 ), and temporal (<10 fs) resolution. The history of s-SNOM is briefly introduced and recent advances which broaden the horizons of this technique in novel material research are summarized. In particular, this includes the pioneering efforts to study the nanoscale electrodynamic properties of plasmonic metamaterials, strongly correlated quantum materials, and polaritonic systems at room or cryogenic temperatures. Technical details, theoretical modeling, and new experimental methods are also discussed extensively, aiming to identify clear technology trends and unsolved challenges in this exciting field of research.
Collapse
Affiliation(s)
- Xinzhong Chen
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY, 11794, USA
| | - Debo Hu
- Division of Nanophotonics, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190, China
| | - Ryan Mescall
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY, 11794, USA
| | - Guanjun You
- Shanghai Key Lab of Modern Optical Systems and Engineering Research Center of Optical Instrument and System, Ministry of Education, University of Shanghai for Science and Technology, Shanghai, 200093, China
| | - D N Basov
- Department of Physics, Columbia University, New York, NY, 10027, USA
| | - Qing Dai
- Division of Nanophotonics, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190, China
| | - Mengkun Liu
- Department of Physics and Astronomy, Stony Brook University, Stony Brook, NY, 11794, USA
| |
Collapse
|
30
|
Giliberti V, Polito R, Ritter E, Broser M, Hegemann P, Puskar L, Schade U, Zanetti-Polzi L, Daidone I, Corni S, Rusconi F, Biagioni P, Baldassarre L, Ortolani M. Tip-Enhanced Infrared Difference-Nanospectroscopy of the Proton Pump Activity of Bacteriorhodopsin in Single Purple Membrane Patches. NANO LETTERS 2019; 19:3104-3114. [PMID: 30950626 PMCID: PMC6745627 DOI: 10.1021/acs.nanolett.9b00512] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2019] [Revised: 04/02/2019] [Indexed: 05/21/2023]
Abstract
Photosensitive proteins embedded in the cell membrane (about 5 nm thickness) act as photoactivated proton pumps, ion gates, enzymes, or more generally, as initiators of stimuli for the cell activity. They are composed of a protein backbone and a covalently bound cofactor (e.g. the retinal chromophore in bacteriorhodopsin (BR), channelrhodopsin, and other opsins). The light-induced conformational changes of both the cofactor and the protein are at the basis of the physiological functions of photosensitive proteins. Despite the dramatic development of microscopy techniques, investigating conformational changes of proteins at the membrane monolayer level is still a big challenge. Techniques based on atomic force microscopy (AFM) can detect electric currents through protein monolayers and even molecular binding forces in single-protein molecules but not the conformational changes. For the latter, Fourier-transform infrared spectroscopy (FTIR) using difference-spectroscopy mode is typically employed, but it is performed on macroscopic liquid suspensions or thick films containing large amounts of purified photosensitive proteins. In this work, we develop AFM-assisted, tip-enhanced infrared difference-nanospectroscopy to investigate light-induced conformational changes of the bacteriorhodopsin mutant D96N in single submicrometric native purple membrane patches. We obtain a significant improvement compared with the signal-to-noise ratio of standard IR nanospectroscopy techniques by exploiting the field enhancement in the plasmonic nanogap that forms between a gold-coated AFM probe tip and an ultraflat gold surface, as further supported by electromagnetic and thermal simulations. IR difference-spectra in the 1450-1800 cm-1 range are recorded from individual patches as thin as 10 nm, with a diameter of less than 500 nm, well beyond the diffraction limit for FTIR microspectroscopy. We find clear spectroscopic evidence of a branching of the photocycle for BR molecules in direct contact with the gold surfaces, with equal amounts of proteins either following the standard proton-pump photocycle or being trapped in an intermediate state not directly contributing to light-induced proton transport. Our results are particularly relevant for BR-based optoelectronic and energy-harvesting devices, where BR molecular monolayers are put in contact with metal surfaces, and, more generally, for AFM-based IR spectroscopy studies of conformational changes of proteins embedded in intrinsically heterogeneous native cell membranes.
Collapse
Affiliation(s)
- Valeria Giliberti
- Istituto
Italiano di Tecnologia, Center for Life NanoScience, Viale Regina Elena 291, I-00161 Roma, Italy
- E-mail:
| | - Raffaella Polito
- Department
of Physics, Sapienza University of Rome, Piazzale Aldo Moro 2, I-00185 Roma, Italy
| | - Eglof Ritter
- Humboldt-Universität
zu Berlin, Institut für
Biologie, Invalidenstraße
42, D-10115 Berlin, Germany
| | - Matthias Broser
- Humboldt-Universität
zu Berlin, Institut für
Biologie, Invalidenstraße
42, D-10115 Berlin, Germany
| | - Peter Hegemann
- Humboldt-Universität
zu Berlin, Institut für
Biologie, Invalidenstraße
42, D-10115 Berlin, Germany
| | - Ljiljana Puskar
- Helmholtz-Zentrum
Berlin für Materialien und Energie GmbH, Albert-Einstein-Str. 15, 12489 Berlin, Germany
| | - Ulrich Schade
- Helmholtz-Zentrum
Berlin für Materialien und Energie GmbH, Albert-Einstein-Str. 15, 12489 Berlin, Germany
| | - Laura Zanetti-Polzi
- Department
of Physical and Chemical Sciences, University
of L’Aquila, Via Vetoio, I-67010 L’Aquila, Italy
| | - Isabella Daidone
- Department
of Physical and Chemical Sciences, University
of L’Aquila, Via Vetoio, I-67010 L’Aquila, Italy
| | - Stefano Corni
- Department
of Chemical Sciences, University of Padova, Via Marzolo 1, I-35131 Padova, Italy
- CNR
Institute
of Nanoscience, Via Campi
213/A, I-41125 Modena, Italy
| | - Francesco Rusconi
- Dipartimento
di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, I-20133 Milano, Italy
| | - Paolo Biagioni
- Dipartimento
di Fisica, Politecnico di Milano, Piazza Leonardo da Vinci 32, I-20133 Milano, Italy
| | - Leonetta Baldassarre
- Department
of Physics, Sapienza University of Rome, Piazzale Aldo Moro 2, I-00185 Roma, Italy
| | - Michele Ortolani
- Istituto
Italiano di Tecnologia, Center for Life NanoScience, Viale Regina Elena 291, I-00161 Roma, Italy
- Department
of Physics, Sapienza University of Rome, Piazzale Aldo Moro 2, I-00185 Roma, Italy
- E-mail:
| |
Collapse
|
31
|
Tran NA, Lee C, Lee DH, Cho KH, Joo SW. Water Molecules on the Epoxide Groups of Graphene Oxide Surfaces. B KOREAN CHEM SOC 2018. [DOI: 10.1002/bkcs.11600] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Nam Anh Tran
- Department of Information Communication, Materials Engineering, Chemistry Convergence Technology; Soongsil University; Seoul 06978 Republic of Korea
| | - Cheolmin Lee
- Department of Chemical & Biological Engineering; Seokyeong University; Seoul 02713 Republic of Korea
| | - Dong Hyun Lee
- Consulting & Technology for Environment Health and Safety; Seoul 04788 Republic of Korea
| | - Kwang-Hwi Cho
- School of Systems Biomedical Science; Soongsil University; Seoul 06978 Republic of Korea
| | - Sang-Woo Joo
- Department of Information Communication, Materials Engineering, Chemistry Convergence Technology; Soongsil University; Seoul 06978 Republic of Korea
| |
Collapse
|
32
|
Yang X, Sun Z, Low T, Hu H, Guo X, García de Abajo FJ, Avouris P, Dai Q. Nanomaterial-Based Plasmon-Enhanced Infrared Spectroscopy. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2018; 30:e1704896. [PMID: 29572965 DOI: 10.1002/adma.201704896] [Citation(s) in RCA: 72] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2017] [Revised: 12/05/2017] [Indexed: 05/19/2023]
Abstract
Surface-enhanced infrared absorption (SEIRA) has attracted increasing attention due to the potential of infrared spectroscopy in applications such as molecular trace sensing of solids, polymers, and proteins, specifically fueled by recent substantial developments in infrared plasmonic materials and engineered nanostructures. Here, the significant progress achieved in the past decades is reviewed, along with the current state of the art of SEIRA. In particular, the plasmonic properties of a variety of nanomaterials are discussed (e.g., metals, semiconductors, and graphene) along with their use in the design of efficient SEIRA configurations. To conclude, perspectives on potential applications, including single-molecule detection and in vivo bioassays, are presented.
Collapse
Affiliation(s)
- Xiaoxia Yang
- Division of Nanophotonics, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Zhipei Sun
- Department of Electronics and Nanoengineering, Aalto University, Tietotie 3, FI-02150, Espoo, Finland
- QTF Centre of Excellence, Department of Applied Physics, Aalto University, FI-00076, Aalto, Finland
| | - Tony Low
- Department of Electrical and Computer Engineering, University of Minnesota, Keller Hall 200 Union St S.E., Minneapolis, MN, 55455, USA
| | - Hai Hu
- Division of Nanophotonics, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - Xiangdong Guo
- Division of Nanophotonics, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| | - F Javier García de Abajo
- ICFO-The Institute of Photonic Sciences, The Barcelona Institute of Science and Technology, 08860, Barcelona, Spain
- ICREA-Institució Catalana de Recerca I Estudis Avancąts, Passeig Lluís Companys 23, 08010, Barcelona, Spain
| | - Phaedon Avouris
- IBM T. J. Watson Research Center, Yorktown Heights, NY, 10598, USA
| | - Qing Dai
- Division of Nanophotonics, CAS Center for Excellence in Nanoscience, National Center for Nanoscience and Technology, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, P. R. China
| |
Collapse
|
33
|
Kästner B, Johnson CM, Hermann P, Kruskopf M, Pierz K, Hoehl A, Hornemann A, Ulrich G, Fehmel J, Patoka P, Rühl E, Ulm G. Infrared Nanospectroscopy of Phospholipid and Surfactin Monolayer Domains. ACS OMEGA 2018; 3:4141-4147. [PMID: 30023886 PMCID: PMC6044929 DOI: 10.1021/acsomega.7b01931] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Accepted: 03/16/2018] [Indexed: 05/22/2023]
Abstract
A main challenge in understanding the structure of a cell membrane and its interactions with drugs is the ability to chemically study the different molecular species on the nanoscale. We have achieved this for a model system consisting of mixed monolayers (MLs) of the biologically relevant phospholipid 1,2-distearoyl-sn-glycero-phosphatidylcholine and the antibiotic surfactin. By employing nano-infrared (IR) microscopy and spectroscopy in combination with atomic force microscopy imaging, it was possible to identify and chemically detect domain formation of the two constituents as well as to obtain IR spectra of these species with a spatial resolution on the nanoscale. A novel method to enhance the near-field imaging contrast of organic MLs by plasmon interferometry is proposed and demonstrated. In this technique, the organic layer is deposited on gold and ML graphene substrates, the latter of which supports propagating surface plasmons. Plasmon reflections arising from changes in the dielectric environment provided by the organic layer lead to an additional contrast mechanism. Using this approach, the interfacial region between surfactin and the phospholipid has been mapped and a transition region is identified.
Collapse
Affiliation(s)
- Bernd Kästner
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
- E-mail: (B.K.)
| | - C. Magnus Johnson
- Department
of Chemistry, Division of Surface and Corrosion Science, KTH Royal Institute of Technology, SE-100 44 Stockholm, Sweden
| | - Peter Hermann
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
| | - Mattias Kruskopf
- Physikalisch-Technische
Bundesanstalt (PTB), Bundesallee 100, 38116 Braunschweig, Germany
| | - Klaus Pierz
- Physikalisch-Technische
Bundesanstalt (PTB), Bundesallee 100, 38116 Braunschweig, Germany
| | - Arne Hoehl
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
| | - Andrea Hornemann
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
| | - Georg Ulrich
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
| | - Jakob Fehmel
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
| | - Piotr Patoka
- Physikalische
Chemie, Institut für Chemie und Biochemie, Freie Universität Berlin, Takustr. 3, 14195 Berlin, Germany
| | - Eckart Rühl
- Physikalische
Chemie, Institut für Chemie und Biochemie, Freie Universität Berlin, Takustr. 3, 14195 Berlin, Germany
| | - Gerhard Ulm
- Physikalisch-Technische
Bundesanstalt (PTB), Abbestr. 2-12, 10587 Berlin, Germany
| |
Collapse
|
34
|
Yong YC, Wang YZ, Zhong JJ. Nano-spectroscopic imaging of proteins with near-field scanning optical microscopy (NSOM). Curr Opin Biotechnol 2018; 54:106-113. [PMID: 29567580 DOI: 10.1016/j.copbio.2018.01.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2017] [Revised: 01/02/2018] [Accepted: 01/22/2018] [Indexed: 01/01/2023]
Abstract
Understanding the hierarchical structure of proteins at their fundamental length scales is essential to get insights into their functions and roles in fundamental biological processes. Near-field scanning optical microscopy (NSOM), which overcomes the diffraction limits of conventional optics, provides a powerful analytical tool to image target proteins at nanoscale resolution. Especially, by combining NSOM with infrared (IR) or Raman spectroscopy, near-field nanospectroscopic imaging of a single protein is achieved. In this review, we present the recent technical progress of NSOM setup for nanospectroscopic imaging of proteins, and its application to nanospectroscopic analysis of protein structures is highlighted and critically reviewed. Finally, current challenges and perspectives on application of NSOM in emerging areas of industrial, environmental and medical biotechnology are discussed.
Collapse
Affiliation(s)
- Yang-Chun Yong
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, Jiangsu Province, China.
| | - Yan-Zhai Wang
- Biofuels Institute, School of the Environment and Safety Engineering, Jiangsu University, 301 Xuefu Road, Zhenjiang 212013, Jiangsu Province, China
| | - Jian-Jiang Zhong
- State Key Laboratory of Microbial Metabolism, Joint International Research Laboratory of Metabolic & Developmental Sciences, and Laboratory of Molecular Biochemical Engineering & Advanced Fermentation Technology, Department of Bioengineering, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, 800 Dong-Chuan Road, Shanghai 200240, China.
| |
Collapse
|
35
|
Affiliation(s)
- Lifu Xiao
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Zachary D Schultz
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| |
Collapse
|
36
|
Greener H, Mrejen M, Arieli U, Suchowski H. Multifrequency excitation and detection scheme in apertureless scattering near-field scanning optical microscopy. OPTICS LETTERS 2017; 42:3157-3160. [PMID: 28809896 DOI: 10.1364/ol.42.003157] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2017] [Accepted: 07/18/2017] [Indexed: 06/07/2023]
Abstract
Near-field scanning optical microscopy has revolutionized the study of fundamental physics, as it is one of very few label-free optical noninvasive nanoscale-resolved imaging techniques. However, its resolution remains strongly limited by the poor discrimination of weak near-field optical signals from a far-field background. Here, we theoretically and experimentally demonstrate a multifrequency excitation and detection scheme in apertureless near-field optical microscopy that exceeds current state-of-the-art sensitivity and background suppression. We achieved a twofold enhancement in sensitivity and deep subwavelength resolution in optical measurements. This method offers rich control over experimental degrees of freedom, breaking the ground for noninterferometric complete retrieval of the near-field signal.
Collapse
|
37
|
Chorsi HT, Zhu Y, Zhang JXJ. Patterned Plasmonic Surfaces-Theory, Fabrication, and Applications in Biosensing. JOURNAL OF MICROELECTROMECHANICAL SYSTEMS : A JOINT IEEE AND ASME PUBLICATION ON MICROSTRUCTURES, MICROACTUATORS, MICROSENSORS, AND MICROSYSTEMS 2017; 26:718-739. [PMID: 29276365 PMCID: PMC5736324 DOI: 10.1109/jmems.2017.2699864] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
Low-profile patterned plasmonic surfaces are synergized with a broad class of silicon microstructures to greatly enhance near-field nanoscale imaging, sensing, and energy harvesting coupled with far-field free-space detection. This concept has a clear impact on several key areas of interest for the MEMS community, including but not limited to ultra-compact microsystems for sensitive detection of small number of target molecules, and "surface" devices for optical data storage, micro-imaging and displaying. In this paper, we review the current state-of-the-art in plasmonic theory as well as derive design guidance for plasmonic integration with microsystems, fabrication techniques, and selected applications in biosensing, including refractive-index based label-free biosensing, plasmonic integrated lab-on-chip systems, plasmonic near-field scanning optical microscopy and plasmonics on-chip systems for cellular imaging. This paradigm enables low-profile conformal surfaces on microdevices, rather than bulk material or coatings, which provide clear advantages for physical, chemical and biological-related sensing, imaging, and light harvesting, in addition to easier realization, enhanced flexibility, and tunability.
Collapse
Affiliation(s)
- Hamid T Chorsi
- Thayer School of engineering, Dartmouth College, Hanover, NH 03755 USA
| | - Ying Zhu
- Thayer School of engineering, Dartmouth College, Hanover, NH 03755 USA
| | - John X J Zhang
- Thayer School of engineering, Dartmouth College, Hanover, NH 03755 USA
| |
Collapse
|
38
|
Jin M, Lu F, Belkin MA. High-sensitivity infrared vibrational nanospectroscopy in water. LIGHT, SCIENCE & APPLICATIONS 2017; 6:e17096. [PMID: 30167276 PMCID: PMC6062223 DOI: 10.1038/lsa.2017.96] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/24/2017] [Revised: 05/28/2017] [Accepted: 05/31/2017] [Indexed: 05/05/2023]
Affiliation(s)
- Mingzhou Jin
- Department of Electrical and Computer Engineering, Microelectronics Research Center, The University of Texas at Austin, 10100 Burnet Road, Austin, TX 78758, USA
| | - Feng Lu
- Department of Electrical and Computer Engineering, Microelectronics Research Center, The University of Texas at Austin, 10100 Burnet Road, Austin, TX 78758, USA
| | - Mikhail A Belkin
- Department of Electrical and Computer Engineering, Microelectronics Research Center, The University of Texas at Austin, 10100 Burnet Road, Austin, TX 78758, USA
| |
Collapse
|
39
|
Shaykhutdinov T, Pop SD, Furchner A, Hinrichs K. Supramolecular Orientation in Anisotropic Assemblies by Infrared Nanopolarimetry. ACS Macro Lett 2017; 6:598-602. [PMID: 35650843 DOI: 10.1021/acsmacrolett.7b00147] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
We report on the experimental characterization of anisotropic supramolecular assemblies by infrared (IR) nanopolarimetry. The presented IR absorption anisotropy imaging method simultaneously provides nanoscale-resolved insights into internal composition, intermolecular interactions, and supramolecular orientation in a label-free and noninvasive fashion. Our study of porphyrin aggregates demonstrates that their morphology can be correlated with stable J-type and metastable H-type stacking-induced anisotropic organization, revealing different oriented attachment growth mechanisms supported by theory. This analysis establishes the broad applicability of IR nanopolarimetric studies to supramolecular polymerization and biomolecular assemblies, opening up new routes in polymer science and macromolecular research.
Collapse
Affiliation(s)
- Timur Shaykhutdinov
- Interface Analytics
Research
Department, Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Berlin 12489, Germany
| | - Simona D. Pop
- Interface Analytics
Research
Department, Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Berlin 12489, Germany
| | - Andreas Furchner
- Interface Analytics
Research
Department, Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Berlin 12489, Germany
| | - Karsten Hinrichs
- Interface Analytics
Research
Department, Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Berlin 12489, Germany
| |
Collapse
|
40
|
Hyperspectral infrared nanoimaging of organic samples based on Fourier transform infrared nanospectroscopy. Nat Commun 2017; 8:14402. [PMID: 28198384 PMCID: PMC5316859 DOI: 10.1038/ncomms14402] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2016] [Accepted: 12/22/2016] [Indexed: 01/24/2023] Open
Abstract
Infrared nanospectroscopy enables novel possibilities for chemical and structural analysis of nanocomposites, biomaterials or optoelectronic devices. Here we introduce hyperspectral infrared nanoimaging based on Fourier transform infrared nanospectroscopy with a tunable bandwidth-limited laser continuum. We describe the technical implementations and present hyperspectral infrared near-field images of about 5,000 pixel, each one covering the spectral range from 1,000 to 1,900 cm−1. To verify the technique and to demonstrate its application potential, we imaged a three-component polymer blend and a melanin granule in a human hair cross-section, and demonstrate that multivariate data analysis can be applied for extracting spatially resolved chemical information. Particularly, we demonstrate that distribution and chemical interaction between the polymer components can be mapped with a spatial resolution of about 30 nm. We foresee wide application potential of hyperspectral infrared nanoimaging for valuable chemical materials characterization and quality control in various fields ranging from materials sciences to biomedicine. In hyperspectral imaging a broadband spectrum is recorded at each pixel, which creates information-rich images. Here, the authors combine this concept with Fourier transform infrared nanospectroscopy to achieve 5,000-pixel, nanoscale-resolution images at wavelengths between 5 and 10 micrometres.
Collapse
|
41
|
|
42
|
Fei Z, Foley JJ, Gannett W, Liu MK, Dai S, Ni GX, Zettl A, Fogler MM, Wiederrecht GP, Gray SK, Basov DN. Ultraconfined Plasmonic Hotspots Inside Graphene Nanobubbles. NANO LETTERS 2016; 16:7842-7848. [PMID: 27960518 DOI: 10.1021/acs.nanolett.6b04076] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
We report on a nanoinfrared (IR) imaging study of ultraconfined plasmonic hotspots inside graphene nanobubbles formed in graphene/hexagonal boron nitride (hBN) heterostructures. The volume of these plasmonic hotspots is more than one-million-times smaller than what could be achieved by free-space IR photons, and their real-space distributions are controlled by the sizes and shapes of the nanobubbles. Theoretical analysis indicates that the observed plasmonic hotspots are formed due to a significant increase of the local plasmon wavelength in the nanobubble regions. Such an increase is attributed to the high sensitivity of graphene plasmons to its dielectric environment. Our work presents a novel scheme for plasmonic hotspot formation and sheds light on future applications of graphene nanobubbles for plasmon-enhanced IR spectroscopy.
Collapse
Affiliation(s)
- Z Fei
- Department of Physics, University of California, San Diego , La Jolla, California 92093, United States
- Center for Nanoscale Materials, Argonne National Laboratory , Argonne, Illinois 60439, United States
- Department of Physics and Astronomy, Iowa State University , Ames, Iowa 50011, United States
| | - J J Foley
- Center for Nanoscale Materials, Argonne National Laboratory , Argonne, Illinois 60439, United States
- Department of Chemistry, William Paterson University , Wayne, New Jersey 07470, United States
| | - W Gannett
- Department of Physics, University of California at Berkeley , Berkeley, California 94720, United States
- Materials Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
| | - M K Liu
- Department of Physics, University of California, San Diego , La Jolla, California 92093, United States
- Department of Physics and Astronomy, Stony Brook University , Stony Brook, New York 11794, United States
| | - S Dai
- Department of Physics, University of California, San Diego , La Jolla, California 92093, United States
| | - G X Ni
- Department of Physics, University of California, San Diego , La Jolla, California 92093, United States
| | - A Zettl
- Department of Physics, University of California at Berkeley , Berkeley, California 94720, United States
- Materials Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
| | - M M Fogler
- Department of Physics, University of California, San Diego , La Jolla, California 92093, United States
| | - G P Wiederrecht
- Center for Nanoscale Materials, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - S K Gray
- Center for Nanoscale Materials, Argonne National Laboratory , Argonne, Illinois 60439, United States
| | - D N Basov
- Department of Physics, University of California, San Diego , La Jolla, California 92093, United States
- Department of Physics, Columbia University , New York, New York 10027, United States
| |
Collapse
|
43
|
Morhart TA, Quirk A, Lardner MJ, May TE, Rosendahl SM, Burgess IJ. Femtomole Infrared Spectroscopy at the Electrified Metal–Solution Interface. Anal Chem 2016; 88:9351-9354. [DOI: 10.1021/acs.analchem.6b02840] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tyler A. Morhart
- Department
of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Amanda Quirk
- Department
of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Michael J. Lardner
- Department
of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| | - Tim E. May
- Canadian Light Source, Saskatoon, Saskatchewan S7N 2 V3, Canada
| | | | - Ian J. Burgess
- Department
of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9, Canada
| |
Collapse
|
44
|
Zhang G, Güell AG, Kirkman PM, Lazenby RA, Miller TS, Unwin PR. Versatile Polymer-Free Graphene Transfer Method and Applications. ACS APPLIED MATERIALS & INTERFACES 2016; 8:8008-16. [PMID: 26953499 DOI: 10.1021/acsami.6b00681] [Citation(s) in RCA: 49] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
A new method for transferring chemical vapor deposition (CVD)-grown monolayer graphene to a variety of substrates is described. The method makes use of an organic/aqueous biphasic configuration, avoiding the use of any polymeric materials that can cause severe contamination problems. The graphene-coated copper foil sample (on which graphene was grown) sits at the interface between hexane and an aqueous etching solution of ammonium persulfate to remove the copper. With the aid of an Si/SiO2 substrate, the graphene layer is then transferred to a second hexane/water interface to remove etching products. From this new location, CVD graphene is readily transferred to arbitrary substrates, including three-dimensional architectures as represented by atomic force microscopy (AFM) tips and transmission electron microscopy (TEM) grids. Graphene produces a conformal layer on AFM tips, to the very end, allowing easy production of tips for conductive AFM imaging. Graphene transferred to copper TEM grids provides large-area, highly electron-transparent substrates for TEM imaging. These substrates can also be used as working electrodes for electrochemistry and high-resolution wetting studies. By using scanning electrochemical cell microscopy, it is possible to make electrochemical and wetting measurements at either a freestanding graphene film or a copper-supported graphene area and readily determine any differences in behavior.
Collapse
Affiliation(s)
- Guohui Zhang
- Department of Chemistry, University of Warwick , Coventry CV4 7AL, United Kingdom
| | - Aleix G Güell
- Department of Chemistry, University of Warwick , Coventry CV4 7AL, United Kingdom
| | - Paul M Kirkman
- Department of Chemistry, University of Warwick , Coventry CV4 7AL, United Kingdom
| | - Robert A Lazenby
- Department of Chemistry, University of Warwick , Coventry CV4 7AL, United Kingdom
| | - Thomas S Miller
- Department of Chemistry, University of Warwick , Coventry CV4 7AL, United Kingdom
| | - Patrick R Unwin
- Department of Chemistry, University of Warwick , Coventry CV4 7AL, United Kingdom
| |
Collapse
|
45
|
Pollard B, Maia FCB, Raschke MB, Freitas RO. Infrared Vibrational Nanospectroscopy by Self-Referenced Interferometry. NANO LETTERS 2016; 16:55-61. [PMID: 26654680 DOI: 10.1021/acs.nanolett.5b02730] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/12/2023]
Abstract
Infrared vibrational scattering scanning near-field optical microscopy (s-SNOM) has emerged as a new frontier in imaging science due to its potential to provide nanoscale spatially resolved chemical spectroscopy for the investigation of molecular, soft-matter, and biological materials. As a phase-sensitive technique able to yield the full complex dielectric function of materials, different interferometric schemes have been developed involving asymmetric interferometry between sample and reference arms. In this work, we take advantage of a greatly simplified symmetric geometry that uses the spatially coherent background scattered light from within the confocal sample volume as a reference field for signal amplification in both self-homodyne and self-heterodyne interferometry. On the basis of a simple model for tip-sample scattering and interferometric detection, we demonstrate the measurement of the vibrational response of molecular materials in good agreement with established values. In addition to a compact design, enhanced signal levels, and a reduced sensitivity to fluctuations and drift, including those from the light source, self-referenced interferometry brings benefits for routine s-SNOM chemical spectroscopy, remaining robust even under a wide range of challenging experimental environments.
Collapse
Affiliation(s)
- Benjamin Pollard
- Department of Physics, Department of Chemistry, and Joint Institute for Lab Astrophysics (JILA), University of Colorado , Boulder, Colorado 80309, United States
| | - Francisco C B Maia
- Brazilian Synchrotron Light Laboratory , Campinas, 13083-100 São Paulo, Brazil
| | - Markus B Raschke
- Department of Physics, Department of Chemistry, and Joint Institute for Lab Astrophysics (JILA), University of Colorado , Boulder, Colorado 80309, United States
| | - Raul O Freitas
- Brazilian Synchrotron Light Laboratory , Campinas, 13083-100 São Paulo, Brazil
| |
Collapse
|
46
|
Levratovsky Y, Gross E. High spatial resolution mapping of chemically-active self-assembled N-heterocyclic carbenes on Pt nanoparticles. Faraday Discuss 2016; 188:345-53. [DOI: 10.1039/c5fd00194c] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The properties of many functional materials critically depend on the spatial distribution of surface active sites. In the case of solid catalysts, the geometric and electronic properties of different surface sites will directly impact their catalytic properties. However, the detection of catalytic sites at the single nanoparticle level cannot be easily achieved and most spectroscopic measurements are performed with ensemble-based measurements in which the reactivity is averaged over millions of nanoparticles. It is hereby demonstrated that chemically-functionalized N-heterocyclic carbene molecules can be attached to the surfaces of Pt nanoparticles and utilized as a model system for studying catalytic reactions on single metallic nanoparticles. The formation of a carbene self-assembled layer on the surface of a Pt nanoparticle and its stability under oxidizing conditions were investigated. IR nanospectroscopy measurements detected the chemical properties of surface-anchored molecules on single nanoparticles. A direct correlation was identified between IR nanospectroscopy measurements and macroscopic ATR-IR measurements. These results demonstrate that high spatial resolution mapping of the catalytic reactivity on single nanoparticles can be achieved with this approach.
Collapse
Affiliation(s)
- Y. Levratovsky
- Institute of Chemistry and the Centre for Nanoscience and Nanotechnology
- The Hebrew University of Jerusalem
- Jerusalem 91904
- Israel
| | - E. Gross
- Institute of Chemistry and the Centre for Nanoscience and Nanotechnology
- The Hebrew University of Jerusalem
- Jerusalem 91904
- Israel
| |
Collapse
|
47
|
Touzalin T, Dauphin AL, Joiret S, Lucas IT, Maisonhaute E. Tip enhanced Raman spectroscopy imaging of opaque samples in organic liquid. Phys Chem Chem Phys 2016; 18:15510-3. [DOI: 10.1039/c6cp02596j] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We demonstrate the feasibility of Tip Enhanced Raman Spectroscopy in liquid for an upright illumination/collection configuration.
Collapse
Affiliation(s)
- T. Touzalin
- Sorbonne Universités
- UPMC Univ Paris 06
- UMR 8235
- Laboratoire Interfaces et Systèmes Electrochimiques
- F-75005 Paris
| | - A. L. Dauphin
- Sorbonne Universités
- UPMC Univ Paris 06
- UMR 8235
- Laboratoire Interfaces et Systèmes Electrochimiques
- F-75005 Paris
| | - S. Joiret
- Sorbonne Universités
- UPMC Univ Paris 06
- UMR 8235
- Laboratoire Interfaces et Systèmes Electrochimiques
- F-75005 Paris
| | - I. T. Lucas
- Sorbonne Universités
- UPMC Univ Paris 06
- UMR 8235
- Laboratoire Interfaces et Systèmes Electrochimiques
- F-75005 Paris
| | - E. Maisonhaute
- Sorbonne Universités
- UPMC Univ Paris 06
- UMR 8235
- Laboratoire Interfaces et Systèmes Electrochimiques
- F-75005 Paris
| |
Collapse
|