In vitro Detection of Hypoxia using a Ratiometric Quantum Dot-based Oxygen Sensor

Nanomaterials-Based Biosensors for COVID-19 Detection-A Review

This review paper discusses the properties of nanomaterials, namely graphene, molybdenum disulfide, carbon nanotubes, and quantum dots for unique sensing applications. Based on the specific analyte to be detected and the functionalization techniques that are employed, some noteworthy sensors that have been developed are discussed. Further, biocompatible sensors fabricated from these materials capable of detecting specific chemical compounds are also highlighted for COVID-19 detection purposes, which can aid in efficient and reliable sensing as well as timely diagnosis.

Improving oxygen sensing performance via inner-molecular π-π stacking in a series of phosphorescent Cu(I) complexes

In this paper, six phosphorescent Cu(I) complexes with three diamine ligands and two phosphorous ligands were prepared. Detailed discussion was performed on these complexes, including single crystals, quantum mechanics theoretical calculation, absorption spectra, emission spectra, emission quantum yields and excited state decay dynamics. Large conjugation planes and π-π stacking were found in these complexes. Their emission was originated from MLCT excited state. Long-lived emissive center was observed due to this MLCT-based decay and the help from π-π stacking. Such long-lived emissive state and the large conjugation planes in these complexes offered enough collision probability with O₂ molecules, making themselves potential oxygen sensing probes. These six complexes were then doped into silica supporting matrix MCM-41 spheres. The resulting composite samples and their emission sensing response towards O₂ were discussed in detail. The optimal sample showed sensitivity as high as 7.80 with response time of 14 s. A careful discussion between Cu(I) complex molecular structure and sensing performance was performed. It was concluded that both a long lifetime and a large conjugation plane lead to improved sensing sensitivity since they increased the collision probability with O₂ molecules. On the other hand, it was found that both sensing response and recovery times were mainly controlled by O₂ diffusion in supporting matrix.

Mechanoresponsive Self-Assembled Perylene Bisimide Films

In this work, self-assembled amino-acid appended perylene bisimides (PBIs) have been studied that when processed into thin films change their resistivity in response to being bent. The PBIs assemble into structures in water and form thin films upon drying. These normally delicate thin films can be tolerant to bending, depending on the aggregates they form. Furthermore, the films then reversibly change their resistivity in response to this mechanical stimulus. This change is proportional to the degree of bending of the film giving them the potential to be used quantitatively to measure mechanical movement, such as in wearable devices.

Ratiometric Nanoparticle Probe Based on FRET-Amplified Phosphorescence for Oxygen Sensing with Minimal Phototoxicity

Luminescent oxygen probes enable direct imaging of hypoxic conditions in cells and tissues, which are associated with a variety of diseases, including cancer. Here, a nanoparticle probe that addresses key challenges in the field is developed, it: i) strongly amplifies room temperature phosphorescence of encapsulated oxygen-sensitive dyes; ii) provides ratiometric response to oxygen; and iii) solves the fundamental problem of phototoxicity of phosphorescent sensors. The nanoprobe is based on 40 nm polymeric nanoparticles, encapsulating ≈2000 blue-emitting cyanine dyes with fluorinated tetraphenylborate counterions, which are as bright as 70 quantum dots (QD525). It functions as a light-harvesting nanoantenna that undergoes efficient Förster resonance energy transfer to ≈20 phosphorescent oxygen-sensitive platinum octaethylporphyrin (PtOEP) acceptor dyes. The obtained nanoprobe emits stable blue fluorescence and oxygen-sensitive red phosphorescence, providing ratiometric response to dissolved oxygen. The light harvesting leads to ≈60-fold phosphorescence amplification and makes the single nanoprobe particle as bright as ≈1200 PtOEP dyes. This high brightness enables oxygen detection at a single-particle level and in cells at ultra-low nanoprobe concentration with no sign of phototoxicity, in contrast to PtOEP dye. The developed nanoprobe is successfully applied to the imaging of a microfluidics-generated oxygen gradient in cancer cells. It constitutes a promising tool for bioimaging of hypoxia.

Diffusivity and intercalation of electroactive dyes-mediated truly ratiometric homogeneous electrochemical strategy for highly sensitive biosensing

A truly ratiometric homogeneous electrochemical biosensor was developed for miRNA detection based on the unique diffusion/intercalation properties of electroactive dyes.

A Cell-Surface-Specific Ratiometric Fluorescent Probe for Extracellular pH Sensing with Solid-State Fluorophore

Extracellular acidity is correlated with the development of various pathological states and bulk pH measurements could not report surface acidity. In this study, we have developed a ratiometric fluorescent probe that aggregates upon interaction with cells, allowing persistent labeling of cells and in situ measurement of cell surface pH. The ternary nanoplatform is constructed by a convenient noncovalent combination of bovine serum albumin protected gold nanoclusters (BSA-AuNCs), fluorescein isothiocyanate (FITC) labeled cationic peptides (CPs), and FITC-free CPs. The red fluorescent AuNCs serve as reference fluorophore, while FITC labeled peptides act as specific recognition element for H⁺ and FITC unlabeled peptides are used for delivery. The probe displays a sensitive fluorescence ratiometric response for pH in the range of 5.0-9.5 with calculated p K_a of 7.2. Further studies have demonstrated that this nanosensor also has properties of high selectivity, reversibility to pH fluctuations, as well as low cytotoxicity. The new surface pH-measurement tool was validated in mapping extracellular pH and monitoring acidification regarding cell metabolism, demonstrating its potential for bioimaging and biosensing.

The Role of Colloidal Stability and Charge in Functionalization of Aqueous Quantum Dots

Semiconductor quantum dots (QDs), also known as nanocrystals, have unique photophysical properties that have allowed them to find utility in many applications, including television and display technologies. They also have significant potential as imaging agents in the biomedical field. To gain the most value from the use of QDs as health-related fluorescent probes, they must be biologically targetable and sensitive to metabolic analytes such as pH and O₂, and the resulting signal must be quantifiable. To achieve these goals, QDs need to be conjugated to vectors such as antibodies or environmentally sensitive chromophores. Until recently, the functionalization of these nanomaterials required a complex fully "bottom-up" approach beginning with the synthesis of the QDs and subsequent manipulations. To simplify this process, our group set out to develop straightforward methods to prepare functionalized nanomaterials for biological imaging and sensing using low-cost, commercially available aqueous QD dispersions. In this Account, we review the common problems and likely solutions related to functionalization of QDs in water with chemical and biological vectors. Early in our investigations, we found that established protocols using a commercially available activating reagent resulted in either low reaction yields or QD precipitation. This was a consequence of the perturbation of the QDs' surface charges by the activating reagent and the conjugation substrate. These surface charges are derived from the anionic surfactants that are commonly employed for encapsulating water-soluble nanomaterials. Thus, cancellation of the surface charges by reagents or substrates results in colloidal instability. To address this problem, we devised conjugation methods that do not alter the overall charge balance of the system. Incorporating reactive moieties directly into the QD's water-solubilizing polymer encapsulants negates the need for destabilizing activators, allowing for functionalization of aqueous samples without precipitation. The most successful approach was realized using neutral activating reagents, such as poly(ethylene glycol) carbodiimide (PEG-CD). PEG-CD binds to the carboxylic acid coating of water-soluble QDs, which primes them for amide bond formation with amine-functionalized substrates. Most importantly, this method can be applied to commercially available aqueous QDs. Using this method, we achieved reaction yields as high as 95%, allowing us to demonstrate a wide-range of QD functionalities and applications for chemical and biological sensing. Conjugation of environmentally sensitive dyes to water-soluble QDs results in reversible and ratiometrically reporting fluorescent probes for metabolic analytes such as pH, bisulfide, and O₂. QDs can also be functionalized with proteins for passive cell delivery or coated with poly(ethylene glycol) to enhance biocompatibility for in vivo studies. In the future, these capabilities may be combined to realize the full potential of quantum dot nanotechnology for biological discovery.

Ratiometric optical nanoprobes enable accurate molecular detection and imaging

Exploring and understanding biological and pathological changes are of great significance for early diagnosis and therapy of diseases. Optical sensing and imaging approaches have experienced major progress in this field. Particularly, an emergence of various functional optical nanoprobes has provided enhanced sensitivity, specificity, targeting ability, as well as multiplexing and multimodal capabilities due to improvements in their intrinsic physicochemical and optical properties. However, one of the biggest challenges of conventional optical nanoprobes is their absolute intensity-dependent signal readout, which causes inaccurate sensing and imaging results due to the presence of various analyte-independent factors that can cause fluctuations in their absolute signal intensity. Ratiometric measurements provide built-in self-calibration for signal correction, enabling more sensitive and reliable detection. Optimizing nanoprobe designs with ratiometric strategies can surmount many of the limitations encountered by traditional optical nanoprobes. This review first elaborates upon existing optical nanoprobes that exploit ratiometric measurements for improved sensing and imaging, including fluorescence, surface enhanced Raman scattering (SERS), and photoacoustic nanoprobes. Next, a thorough discussion is provided on design strategies for these nanoprobes, and their potential biomedical applications for targeting specific biomolecule populations (e.g. cancer biomarkers and small molecules with physiological relevance), for imaging the tumor microenvironment (e.g. pH, reactive oxygen species, hypoxia, enzyme and metal ions), as well as for intraoperative image guidance of tumor-resection procedures.

Quantitatively monitoring oxygen variation in endoplasmic reticulum with a fluorophore–phosphor energy transfer cassette

EET cassette Ir-Np-OH has been constructed by connecting an Ir(iii) complex as acceptor to a naphthalimide dye as donor.

Luminescent Probe Based Techniques for Hypoxia Imaging

Hypoxia is a condition of tissue environments wherein a lower than normal level of oxygen is available, and it serves as the root cause and indicator of various diseases. Detection of hypoxia in tumors is imperative for furthering our understanding of the pathological effects and the development of proper treatments, as it is well established that hypoxic tumors are able to impede the cancer treatment process by being resistant to many therapies. It is important therefore to be able to detect hypoxia in tissues and tumors through in vivo imaging methods. A growing area for detection of hypoxia in vivo is the use of fluorescent/luminescent probes which has accelerated in recent years. The continued quest for improvements in selectivity and sensitivity has inspired researchers to pursue new strategies for fluorescence/luminescent probe design. This review will discuss various luminescent probes based on small molecules, dyes, macromolecules, and nanoparticles for sensitive and specific detection of oxygen levels directly or by indirect mechanisms such as the presence of enzymes or related factors that arise in a hypoxic environment. Following the particular mechanism of detection, each probe has specific structural and photophysical properties which permit its selectivity and sensitivity. These probes show promise in terms of low toxicity and high specificity among other merits discussed, and in providing new dimensions for hypoxia detection, these works contribute to future potential methods for clinical diagnosis of hypoxic tissues and tumors.

Shell thickness effects on quantum dot brightness and energy transfer

Heterostructured core/shell quantum dots (QDs) are prized in biomedical imaging and biosensing applications because of their bright, photostable emission and effectiveness as Förster resonance energy transfer (FRET) donors. However, as nanomaterials chemistry has progressed beyond traditional QDs to incorporate new compositions, ultra-thick shells, and alloyed structures, few of these materials have had their optical properties systematically characterized for effective application. For example, thick-shelled QDs, also known as 'giant' QDs (gQDs) are useful in single-particle tracking microscopy because of their reduced blinking, but we know only that CdSe/CdS gQDs are qualitatively brighter than thin-shelled CdSe/CdS in aqueous media. In this study, we quantify the impact of shell thickness on the nanoparticle molar extinction coefficient, quantum yield, brightness, and effectiveness as a FRET donor for CdSe/xCdS core/shell and CdSe/xCdS/ZnS core/shell/shell QDs, with variable thicknesses of the CdS shell (x). Molar extinction coefficients up to three orders of magnitude higher than conventional dyes and forty-fold greater than traditional QDs are reported. When thick CdS shells are combined with ZnS capping, quantum yields following thiol ligand exchange reach nearly 40%-5-10× higher than either the commercially available QDs or gQDs without ZnS caps treated the same way. These results clearly show that thick CdS shells and ZnS capping shells work in concert to provide the brightest possible CdSe-based QDs for bioimaging applications. We demonstrate that thicker shelled gQDs are over 50-fold brighter than their thin-shelled counterparts because of significant increases in their absorption cross-sections and higher quantum yield in aqueous milieu. Consistent with the point-dipole approximation commonly used for QD-FRET, these data show that thick shells contribute to the donor-acceptor distance, reducing FRET efficiency. Despite the reduction in FRET efficiency, even the thickest-shell gQDs exhibited energy transfer. Through this systematic study, we elucidate the tradeoffs between signal output, which is much higher for the gQDs, and FRET efficiency, which decreases with shell thickness. This study serves as a guide to nanobiotechnologists striving to use gQDs in imaging and sensing devices.

Remote Terpyridine Integrated NHC-IrIII Luminophores as Potential Dual-Emissive Ratiometric O2 Probes

A new class of bi-luminophoric dyad has been designed, consisting of an oxygen-sensitive phosphorescent NHC-Ir^III center with a remotely integrated oxygen-insensitive fluorescent terpyridine unit. The new terpyridine flurophore-integrated NHC-Ir^III molecule was demonstrated as a potential ratiometric O₂ probe with built-in internal reference, exhibiting tunable dual-emissive features, as well as highly linear and reversible O₂ -response behavior.