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Rozyyev V, Gao F, Liu Y, Shevate R, Pathak R, Mane AU, Darling SB, Elam JW. Thiol-Functionalized Adsorbents through Atomic Layer Deposition and Vapor-Phase Silanization for Heavy Metal Ion Removal. ACS APPLIED MATERIALS & INTERFACES 2024; 16:34030-34041. [PMID: 38913653 DOI: 10.1021/acsami.4c03935] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/26/2024]
Abstract
The removal of toxic heavy metal ions from water resources is crucial for environmental protection and public health. In this study, we address this challenge by developing a surface functionalization technique for the selective adsorption of these contaminants. Our approach involves atomic layer deposition (ALD) followed by vapor-phase silanization of porous substrates. We utilized porous silica gel powder (∼100 μm particles, 89 m2/g surface area, ∼30 nm pores) as an initial substrate. This powder was first coated with ∼0.5 nm ALD Al2O3, followed by vapor-phase grafting of a thiol-functional silane. The modified powder, particularly in acidic conditions (pH = 4), showed high selectivity in adsorbing Cd(II), As(V), Pb(II), Hg(II), and Cu(II) heavy metal ions in mixed ion solutions over common benign ions (e.g., Na, K, Ca, and Mg). Langmuir adsorption isotherms and breakthrough adsorption studies were conducted to assess heavy metal binding affinity and revealed the order of Cd(II) < Pb(II) < Cu(II) < As(V) < Hg(II), with a significantly higher affinity for As(V) and Hg(II) ions. Time-dependent uptake studies demonstrated rapid removal of heavy metal ions from aqueous environments, with Hg(II) exhibiting the fastest adsorption kinetics on thiol-modified surfaces. These findings highlight the potential of ALD and vapor-phase silanization to create effective adsorbents for the targeted removal of hazardous contaminants from water.
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Affiliation(s)
- Vepa Rozyyev
- Applied Materials Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
- Advanced Materials for Energy-Water Systems Energy Frontier Research Center, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Feng Gao
- Advanced Materials for Energy-Water Systems Energy Frontier Research Center, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Yining Liu
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
- Advanced Materials for Energy-Water Systems Energy Frontier Research Center, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Rahul Shevate
- Applied Materials Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Rajesh Pathak
- Applied Materials Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Anil U Mane
- Applied Materials Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Seth B Darling
- Pritzker School of Molecular Engineering, University of Chicago, Chicago, Illinois 60637, United States
- Advanced Materials for Energy-Water Systems Energy Frontier Research Center, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Chemical Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Jeffrey W Elam
- Applied Materials Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Advanced Materials for Energy-Water Systems Energy Frontier Research Center, Argonne National Laboratory, Lemont, Illinois 60439, United States
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2
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Olean-Oliveira A, Trevizan HF, Cardoso CX, Teixeira MF. Impedimetric study of the electrocatalytic oxidation of alcohols by nickel-Schiff base metallopolymer: Potential application for forensic identification of alcoholic beverage contaminants by multivariate data analysis. Talanta 2023. [DOI: 10.1016/j.talanta.2022.124029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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3
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Zhang X, Zhu Z, Liu W, Gao F, Guo J, Song B, Lee LP, Zhang F. The Selective Function of Quantum Biological Electron Transfer between DNA Bases and Metal Ions in DNA Replication. J Phys Chem Lett 2022; 13:7779-7787. [PMID: 35969805 DOI: 10.1021/acs.jpclett.2c01877] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Metal ions play vital roles in the electron transfer between biological molecules in humans, animals, and plants. However, the electron transfer between metal ions and nucleic acids and its impact on DNA-ion binding during DNA replication has been ignored. Here, we present a long-range quantum biological electron transfer (QBET) between DNA bases and metal ions and its selective function of DNA-ion binding in DNA replication. We discover biophysical DNA-ion binding and create biological filters that allow selective DNA replication by dual modulators of the valence and concentration of metal ions. QBET-based DNA replication filters provide powerful tools for ultrasensitive polymerase chain reaction (PCR) to selectively amplify target sequences with a discrete concentration window of metal ions; for example, Au3+ exhibits a concentration window that is approximately 3 orders of magnitude lower than that of Na+. DNA-ion filters provide new perspectives into metal ion-mediated QBET in DNA replication and hold great potential in life sciences and medical applications.
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Affiliation(s)
- Xianjing Zhang
- Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Zhi Zhu
- Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Wenpeng Liu
- Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, United States
| | - Feng Gao
- Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Jun Guo
- Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Bo Song
- Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
| | - Luke P Lee
- Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts 02115, United States
- Department of Bioengineering, Department of Electrical Engineering and Computer Science, University of California, Berkeley, California 94720, United States
- Institute of Quantum Biophysics, Department of Biophysics, Sungkyunkwan University, Suwon 16419, Korea
| | - Feng Zhang
- Key Laboratory of Optical Technology and Instrument for Medicine, Ministry of Education, School of Optical-Electrical Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
- Wenzhou Institute, University of Chinese Academy of Sciences, Wenzhou 325001, China
- State Key Laboratory of Respiratory Disease, Guangzhou Institute of Oral Disease, Stomatology Hospital, School of Biomedical Engineering, Guangzhou Medical University, Guangzhou 511436, China
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4
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Montasell MC, Monge P, Carmali S, Dias Loiola LM, Andersen DG, Løvschall KB, Søgaard AB, Kristensen MM, Pütz JM, Zelikin AN. Chemical zymogens for the protein cysteinome. Nat Commun 2022; 13:4861. [PMID: 35982075 PMCID: PMC9388531 DOI: 10.1038/s41467-022-32609-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 08/08/2022] [Indexed: 12/18/2022] Open
Abstract
We present three classes of chemical zymogens established around the protein cysteinome. In each case, the cysteine thiol group was converted into a mixed disulfide: with a small molecule, a non-degradable polymer, or with a fast-depolymerizing fuse polymer (ZLA). The latter was a polydisulfide based on naturally occurring molecule, lipoic acid. Zymogen designs were applied to cysteine proteases and a kinase. In each case, enzymatic activity was successfully masked in full and reactivated by small molecule reducing agents. However, only ZLA could be reactivated by protein activators, demonstrating that the macromolecular fuse escapes the steric bulk created by the protein globule, collects activation signal in solution, and relays it to the active site of the enzyme. This afforded first-in-class chemical zymogens that are activated via protein-protein interactions. We also document zymogen exchange reactions whereby the polydisulfide is transferred between the interacting proteins via the "chain transfer" bioconjugation mechanism.
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Affiliation(s)
| | - Pere Monge
- Department of Chemistry, Aarhus University, 8000, Aarhus, Denmark
| | - Sheiliza Carmali
- Department of Chemistry, Aarhus University, 8000, Aarhus, Denmark.,School of Pharmacy, Queen's University Belfast, Belfast, UK
| | | | - Dante Guldbrandsen Andersen
- Department of Chemistry, Aarhus University, 8000, Aarhus, Denmark.,iNano Interdisciplinary Nanoscience Centre, Aarhus University, 8000, Aarhus, Denmark
| | | | - Ane Bretschneider Søgaard
- Department of Chemistry, Aarhus University, 8000, Aarhus, Denmark.,iNano Interdisciplinary Nanoscience Centre, Aarhus University, 8000, Aarhus, Denmark
| | | | | | - Alexander N Zelikin
- Department of Chemistry, Aarhus University, 8000, Aarhus, Denmark. .,iNano Interdisciplinary Nanoscience Centre, Aarhus University, 8000, Aarhus, Denmark.
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5
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Benomrane B, Hamza Reguig F, Krallafa AM. Effectiveness electronic density‐based descriptor to index hard–hard interaction. J PHYS ORG CHEM 2022. [DOI: 10.1002/poc.4395] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Brahim Benomrane
- LCPM Laboratory, Faculty of Sciences, Chemistry Department University of Oran 1 Ahmed BenBella Oran Algeria
| | - Farouk Hamza Reguig
- LCPM Laboratory, Faculty of Sciences, Chemistry Department University of Oran 1 Ahmed BenBella Oran Algeria
| | - Abdelghani Mohamed Krallafa
- LCPM Laboratory, Faculty of Sciences, Chemistry Department University of Oran 1 Ahmed BenBella Oran Algeria
- SirMa CNRS UMR 7369, MEDyC University of Reims Champagne‐Ardenne Reims France
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6
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Holt RA, Seybold PG. Computational Estimation of the Acidities of Pyrimidines and Related Compounds. Molecules 2022; 27:385. [PMID: 35056699 PMCID: PMC8782049 DOI: 10.3390/molecules27020385] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2021] [Revised: 12/20/2021] [Accepted: 01/01/2022] [Indexed: 12/02/2022] Open
Abstract
Pyrimidines are key components in the genetic code of living organisms and the pyrimidine scaffold is also found in many bioactive and medicinal compounds. The acidities of these compounds, as represented by their pKas, are of special interest since they determine the species that will prevail under different pH conditions. Here, a quantum chemical quantitative structure-activity relationship (QSAR) approach was employed to estimate these acidities. Density-functional theory calculations at the B3LYP/6-31+G(d,p) level and the SM8 aqueous solvent model were employed, and the energy difference ∆EH2O between the parent compound and its dissociation product was used as a variation parameter. Excellent estimates for both the cation → neutral (pKa1, R2 = 0.965) and neutral → anion (pKa2, R2 = 0.962) dissociations were obtained. A commercial package from Advanced Chemical Design also yielded excellent results for these acidities.
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Affiliation(s)
| | - Paul G. Seybold
- Department of Chemistry, Wright State University, Dayton, OH 45435, USA;
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7
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Walden K, Martin ME, LaBee L, Provorse Long M. Hydration and Charge-Transfer Effects of Alkaline Earth Metal Ions Binding to a Carboxylate Anion, Phosphate Anion, and Guanine Nucleobase. J Phys Chem B 2021; 125:12135-12146. [PMID: 34706195 DOI: 10.1021/acs.jpcb.1c05757] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
To investigate the ability of alkaline earth metal ions to tune ion-mediated DNA adsorption, hydrated Mg2+, Ca2+, Sr2+, and Ba2+ ions bound to a carboxylate anion, phosphate anion, and guanine nucleobase were modeled using density functional theory (DFT) and a combined explicit and continuum solvent model. The large first solvation shell of Ba2+ requires a larger solute cavity defined by a solvent-accessible surface, which is used to model all hydrated ions. Alkaline earth metal ions bind indirectly or directly to each binding site. DFT binding energies decrease with increasing ion size, which is likely due to ion size and hydration structure, rather than quantum effects such as charge transfer. However, charge transfer explains weaker ion binding to guanine compared to phosphate or carboxylate. Overall, carboxylate and phosphate anions are expected to compete equally for hydrated Mg2+, Ca2+, Sr2+, and Ba2+ ions and larger alkaline earth metal ions may induce weaker ion-mediated adsorption. The ion size and hydration structure of alkaline earth metal ions may effectively tune ion-mediated adsorption processes, such as DNA adsorption to functionalized surfaces.
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Affiliation(s)
- Kathryn Walden
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Madison E Martin
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Lacey LaBee
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
| | - Makenzie Provorse Long
- Department of Chemistry, University of Central Arkansas, Conway, Arkansas 72035, United States
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8
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Pracht P, Grimme S. Efficient Quantum-Chemical Calculations of Acid Dissociation Constants from Free-Energy Relationships. J Phys Chem A 2021; 125:5681-5692. [PMID: 34142841 DOI: 10.1021/acs.jpca.1c03463] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The calculation of acid dissociation constants (pKa) is an important task in computational chemistry and chemoinformatics. Theoretically and with minimal empiricism, this is possible from computed acid dissociation free energies via so-called linear free-energy relationships. In this study some modifications are introduced to the latter, providing a straightforward, broadly applicable protocol with an adjustable degree of sophistication for quantum chemistry-based calculations of pKa in water. It targets a wide pKa range (∼70 units) and medium-sized, flexible molecules. Herein, a focus is set on the recently published r2SCAN-3c and related efficient composite density functionals and the semiempirical GFN2-xTB method, including a newly introduced energy correction for heterolytic dissociation, both in combination with implicit solvation models. The performance is evaluated in comparison with experimental data, showing mean errors often smaller than a targeted 1 pKa unit accuracy. Larger deviations are observed only upon inclusion of challenging highly negative (<-5) or positive (>15) pKa values. Among all those tested, it is found that B97-3c is the best performing functional, although rather independently of the density functional theory (DFT) method used; low root-mean-square errors of 0.8-1.0 pKa units for typical drugs are obtained. For optimal performance, it is recommended to employ DFT functional specific free-energy relationship parameters. Additionally, a significant conformational dependence of the pKa values is revealed and quantified for some nonrigid drug molecules.
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Affiliation(s)
- Philipp Pracht
- Mulliken Center for Theoretical Chemistry, Institute for Physical and Theoretical Chemistry, University of Bonn, Beringstr. 4, 53115 Bonn, Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry, Institute for Physical and Theoretical Chemistry, University of Bonn, Beringstr. 4, 53115 Bonn, Germany
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9
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Haslak ZP, Zareb S, Dogan I, Aviyente V, Monard G. Using Atomic Charges to Describe the p Ka of Carboxylic Acids. J Chem Inf Model 2021; 61:2733-2743. [PMID: 34137248 DOI: 10.1021/acs.jcim.1c00059] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
In this study, we present an accurate protocol for the fast prediction of pKa's of carboxylic acids based on the linear relationship between computed atomic charges of the anionic form of the carboxylate fragment and their experimental pKa values. Five charge descriptors, three charge models, three solvent models, gas-phase calculations, several DFT methods (a combination of eight DFT functionals and fifteen basis sets), and four different semiempirical approaches were tested. Among those, the best combination to reproduce experimental pKa's is to compute the natural population analysis atomic charge using the solvation model based on density model at the M06L/6-311G(d,p) level of theory and selecting the maximum atomic charge on the carboxylic oxygen atoms (R2 = 0.955). The applicability of the suggested protocol and its stability along geometrical changes are verified by molecular dynamics simulations performed for a set of aspartate, glutamate, and alanine peptides. By reporting the calculated atomic charge of the carboxylate form into the linear relationship derived in this work, it should be possible to accurately estimate the amino acid's pKa's in a protein environment.
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Affiliation(s)
- Zeynep Pinar Haslak
- Université de Lorraine, CNRS, LPCT, F-54000 Nancy, France.,Department of Chemistry, Boğaziçi University, 34342 Bebek, Istanbul, Turkey
| | - Sabrina Zareb
- Université de Lorraine, CNRS, LPCT, F-54000 Nancy, France
| | - Ilknur Dogan
- Department of Chemistry, Boğaziçi University, 34342 Bebek, Istanbul, Turkey
| | - Viktorya Aviyente
- Department of Chemistry, Boğaziçi University, 34342 Bebek, Istanbul, Turkey
| | - Gerald Monard
- Université de Lorraine, CNRS, LPCT, F-54000 Nancy, France
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10
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Heins SP, Schneider PE, Speelman AL, Hammes-Schiffer S, Appel AM. Electrocatalytic Oxidation of Alcohol with Cobalt Triphosphine Complexes. ACS Catal 2021. [DOI: 10.1021/acscatal.1c00781] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Affiliation(s)
- Spencer P. Heins
- Center for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K2-57, Richland, Washington 99352, United States
| | - Patrick E. Schneider
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Amy L. Speelman
- Center for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K2-57, Richland, Washington 99352, United States
| | | | - Aaron M. Appel
- Center for Molecular Electrocatalysis, Pacific Northwest National Laboratory, P.O. Box 999, K2-57, Richland, Washington 99352, United States
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11
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Shi Y, Liu X, Cao H, Bie F, Han Y, Yan P, Szostak R, Szostak M, Liu C. Conversion of esters to thioesters under mild conditions. Org Biomol Chem 2021; 19:2991-2996. [PMID: 33734267 DOI: 10.1039/d1ob00187f] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We report conversion of esters to thioesters via selective C-O bond cleavage/weak C-S bond formation under transition-metal-free conditions. The method is notable for a general and practical transition-metal-free system, broad substrate scope and excellent functional group tolerance. The strategy was successfully deployed in late-stage thioesterification, site-selective cross-coupling/thioesterification/decarbonylation and easy-to-handle gram scale thioesterification. Selectivity and computational studies were performed to gain insight into the formation of weak C-S bonds by C-O bond cleavage, which contrasts with the traditional trend of nucleophilic additions to carboxylic acid derivatives.
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Affiliation(s)
- Yijun Shi
- Shandong Lunan Coal Chemical Research Institute of Engineering and Technology, Zaozhuang University, 1 Bei'an Road, Zaozhuang, Shandong 277160, China.
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12
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Yaylali FV, Ozel H, Udum YA, Toppare L, Soylemez S, Gunbas G. ProTOT: Synthesis of the missing member of the 3,4-chalcogen substituted bridged thiophenes and its utilization in donor-acceptor polymers. POLYMER 2021. [DOI: 10.1016/j.polymer.2020.123076] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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13
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Artemov VG, Ryzhov A, Carlsen E, Kapralov PO, Ouerdane H. Nonrotational Mechanism of Polarization in Alcohols. J Phys Chem B 2020; 124:11022-11029. [PMID: 33225700 DOI: 10.1021/acs.jpcb.0c09380] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Chemical polarity governs various mechanical, chemical, and thermodynamic properties of dielectrics. Polar liquids have been amply studied, yet the basic mechanisms underpinning their dielectric properties remain not fully understood, as standard models following Debye's phenomenological approach do not account for quantum effects and cannot aptly reproduce the full dc-up-to-THz spectral range. Here, using the illustrative case of monohydric alcohols, we show that deep tunneling and the consequent intermolecular separation of excess protons and "proton-holes" in the polar liquids govern their static and dynamic dielectric properties on the same footing. We performed systematic ultrabroadband (0-10 THz) spectroscopy experiments with monohydric alcohols of different (0.4-1.6 nm) molecular lengths and show that the finite lifetime of molecular species and the proton-hole correlation length are the two principle parameters responsible for the dielectric response of all the studied alcohols across the entire frequency range. Our results demonstrate that a quantum nonrotational intermolecular mechanism drives the polarization in alcohols while the rotational mechanism of molecular polarization plays a secondary role, manifesting itself in the sub-terahertz region only.
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Affiliation(s)
- Vasily G Artemov
- Center for Energy Science and Technology, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
| | - Alexander Ryzhov
- Center for Energy Science and Technology, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
| | - Emma Carlsen
- Department of Chemistry and Biochemistry, Brigham Young University, 84602 Provo, Utah, United States
| | | | - Henni Ouerdane
- Center for Energy Science and Technology, Skolkovo Institute of Science and Technology, 121205 Moscow, Russia
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14
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15
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Santos BF, Pereira CF, Pinz MP, Oliveira AR, Brand G, Katla R, Wilhelm EA, Luchese C, Domingues NL. Efficient palladium‐catalyzed C‐S cross‐coupling reaction of benzo‐2,1,3‐thiadiazole at C‐5‐position: A potential class of AChE inhibitors. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.5650] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Beatriz F. Santos
- Organic Catalysis and Biocatalysis Laboratory ‐ LACOBFederal University of Grande Dourados ‐ UFGD Dourados/MS Brazil
| | - Caroline F. Pereira
- Programa de Pós‐Graduação em Bioquímica e Bioprospecção, Laboratório de Pesquisa em Farmacologia Bioquímica (LaFarBio), Grupo de pesquisa em Neurobiotecnologia – GPN, CCQFAUniversidade Federal de Pelotas Pelotas/RS Brazil
| | - Mikaela P. Pinz
- Programa de Pós‐Graduação em Bioquímica e Bioprospecção, Laboratório de Pesquisa em Farmacologia Bioquímica (LaFarBio), Grupo de pesquisa em Neurobiotecnologia – GPN, CCQFAUniversidade Federal de Pelotas Pelotas/RS Brazil
| | - Aline R. Oliveira
- Organic Catalysis and Biocatalysis Laboratory ‐ LACOBFederal University of Grande Dourados ‐ UFGD Dourados/MS Brazil
| | - George Brand
- Organic Catalysis and Biocatalysis Laboratory ‐ LACOBFederal University of Grande Dourados ‐ UFGD Dourados/MS Brazil
| | - Ramesh Katla
- Organic Catalysis and Biocatalysis Laboratory ‐ LACOBFederal University of Grande Dourados ‐ UFGD Dourados/MS Brazil
| | - Ethel A. Wilhelm
- Programa de Pós‐Graduação em Bioquímica e Bioprospecção, Laboratório de Pesquisa em Farmacologia Bioquímica (LaFarBio), Grupo de pesquisa em Neurobiotecnologia – GPN, CCQFAUniversidade Federal de Pelotas Pelotas/RS Brazil
| | - Cristiane Luchese
- Programa de Pós‐Graduação em Bioquímica e Bioprospecção, Laboratório de Pesquisa em Farmacologia Bioquímica (LaFarBio), Grupo de pesquisa em Neurobiotecnologia – GPN, CCQFAUniversidade Federal de Pelotas Pelotas/RS Brazil
| | - Nelson L.C. Domingues
- Organic Catalysis and Biocatalysis Laboratory ‐ LACOBFederal University of Grande Dourados ‐ UFGD Dourados/MS Brazil
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16
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Lyagin I, Efremenko E. Enzymes for Detoxification of Various Mycotoxins: Origins and Mechanisms of Catalytic Action. Molecules 2019; 24:E2362. [PMID: 31247992 PMCID: PMC6651818 DOI: 10.3390/molecules24132362] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2019] [Revised: 06/14/2019] [Accepted: 06/24/2019] [Indexed: 11/16/2022] Open
Abstract
Mycotoxins are highly dangerous natural compounds produced by various fungi. Enzymatic transformation seems to be the most promising method for detoxification of mycotoxins. This review summarizes current information on enzymes of different classes to convert various mycotoxins. An in-depth analysis of 11 key enzyme mechanisms towards dozens of major mycotoxins was realized. Additionally, molecular docking of mycotoxins to enzymes' active centers was carried out to clarify some of these catalytic mechanisms. Analyzing protein homologues from various organisms (plants, animals, fungi, and bacteria), the prevalence and availability of natural sources of active biocatalysts with a high practical potential is discussed. The importance of multifunctional enzyme combinations for detoxification of mycotoxins is posed.
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Affiliation(s)
- Ilya Lyagin
- Faculty of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia
- Emanuel Institute of Biochemical Physics, RAS, Moscow 119334, Russia
| | - Elena Efremenko
- Faculty of Chemistry, Lomonosov Moscow State University, Moscow 119991, Russia.
- Emanuel Institute of Biochemical Physics, RAS, Moscow 119334, Russia.
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17
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Fan F, Zhao Y, Cao Z. Insight into the delivery channel and selectivity of multiple binding sites in bovine serum albumin towards naphthalimide-polyamine derivatives. Phys Chem Chem Phys 2019; 21:7429-7439. [PMID: 30892331 DOI: 10.1039/c9cp00527g] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Naphthalimide derivatives are types of small-molecule anticancer drug candidates; however, their negative factors and potential side effects make their application limited. The pharmacophores select a direct access into the tumor cells as the first choice; this can reduce the side effect of the anti-cancer drugs on the normal cells. Herein, the delivery and binding of the naphthalimide-polyamine complex assisted by the bovine serum albumin (BSA) protein have been studied by combining several molecular dynamic simulations. The plausible transportation channels and the most favorable pathways for the delivery of the naphthalimide-polyamine complex to two drug sites (DSI and DSII), their thermodynamic and dynamic properties and the mechanisms have been discussed in detail. The residues His287 and Phe394 acted as guards in the DSI and DSII, respectively, which played a gating-switch role by flipping the ring from open to close during the compound delivery. The binding mode, binding energy and substituent effects have been also identified. The two drug sites have different preferences towards the compound with the electron-withdrawing and electron-donating substituents, and their strong interactions are more sensitive to the number of the substituent groups. The naphthalimide-polyamine complexes are more likely to choose DSI, both thermodynamically and dynamically, as compared to DSII. This selective specificity of these two drug sites manipulated by the electron-withdrawing and electron-donating substituents is quite promising for the design of new naphthalimide drugs.
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Affiliation(s)
- Fangfang Fan
- State Key Laboratory of Physical Chemistry of Solid Surfaces and Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry, College of Chemistry and Chemical Engineering, Xiamen University, Xiamen, China.
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18
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Colorimetric and visual determination of ultratrace uranium concentrations based on the aggregation of amidoxime functionalized gold nanoparticles. Mikrochim Acta 2019; 186:183. [DOI: 10.1007/s00604-019-3292-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2018] [Accepted: 01/30/2019] [Indexed: 10/27/2022]
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19
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Potentially helical imidazole-containing conjugated oligomers: synthesis, optical properties, and conformation. Polym J 2018. [DOI: 10.1038/s41428-018-0146-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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20
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Beedle AEM, Mora M, Davis CT, Snijders AP, Stirnemann G, Garcia-Manyes S. Forcing the reversibility of a mechanochemical reaction. Nat Commun 2018; 9:3155. [PMID: 30089863 PMCID: PMC6082871 DOI: 10.1038/s41467-018-05115-6] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 06/13/2018] [Indexed: 11/09/2022] Open
Abstract
Mechanical force modifies the free-energy surface of chemical reactions, often enabling thermodynamically unfavoured reaction pathways. Most of our molecular understanding of force-induced reactivity is restricted to the irreversible homolytic scission of covalent bonds and ring-opening in polymer mechanophores. Whether mechanical force can by-pass thermodynamically locked reactivity in heterolytic bimolecular reactions and how this impacts the reaction reversibility remains poorly understood. Using single-molecule force-clamp spectroscopy, here we show that mechanical force promotes the thermodynamically disfavored SN2 cleavage of an individual protein disulfide bond by poor nucleophilic organic thiols. Upon force removal, the transition from the resulting high-energy unstable mixed disulfide product back to the initial, low-energy disulfide bond reactant becomes suddenly spontaneous, rendering the reaction fully reversible. By rationally varying the nucleophilicity of a series of small thiols, we demonstrate how force-regulated chemical kinetics can be finely coupled with thermodynamics to predict and modulate the reversibility of bimolecular mechanochemical reactions.
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Affiliation(s)
- Amy E M Beedle
- Department of Physics and Randall Centre for Cell and Molecular Biophysics, King's College London, London, WC2R 2LS, UK
| | - Marc Mora
- Department of Physics and Randall Centre for Cell and Molecular Biophysics, King's College London, London, WC2R 2LS, UK
| | - Colin T Davis
- The Francis Crick Institute, Protein analysis and Proteomics Science Technology Platform, 1 Midland Road, London, NW1 1AT, UK
| | - Ambrosius P Snijders
- The Francis Crick Institute, Protein analysis and Proteomics Science Technology Platform, 1 Midland Road, London, NW1 1AT, UK
| | - Guillaume Stirnemann
- CNRS Laboratoire de Biochimie Théorique, Institut de Biologie Physico-Chimique, Univ. Paris Denis Diderot, Sorbonne Paris Cité, PSL Research University, 13 rue Pierre et Marie Curie, 75005, Paris, France
| | - Sergi Garcia-Manyes
- Department of Physics and Randall Centre for Cell and Molecular Biophysics, King's College London, London, WC2R 2LS, UK.
- The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.
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21
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Self JL, Dolinski ND, Zayas MS, Read de Alaniz J, Bates CM. Brønsted-Acid-Catalyzed Exchange in Polyester Dynamic Covalent Networks. ACS Macro Lett 2018; 7:817-821. [PMID: 35650774 DOI: 10.1021/acsmacrolett.8b00370] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
The effect of catalyst strength on polyester-alcohol dynamic covalent exchange was systematically studied using Brønsted acids and a low-Tg poly(4-methylcaprolactone) vitrimer formulation. Relaxation times, activation energies, and Arrhenius prefactors are correlated with pKa. Strong protic acids induce facile network relaxation at 25 °C on the order of 104-105 s, significantly faster than Lewis acid alternatives that function only above 100 °C. Activation energies span 49-67 kJ/mol and increase as pKa decreases. The opposite trend is observed with the Arrhenius prefactor. We anticipate that the quantitative understanding of Brønsted acid effects disclosed herein will be of utility in future studies that exploit acid-catalyzed dynamic covalent bond exchange.
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22
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Nural Y. Synthesis, antimycobacterial activity, and acid dissociation constants of polyfunctionalized 3-[2-(pyrrolidin-1-yl)thiazole-5-carbonyl]-2H-chromen-2-one derivatives. MONATSHEFTE FUR CHEMIE 2018. [DOI: 10.1007/s00706-018-2250-7] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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23
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Menczinger B, Nemes A, Szíjjártó C, Rábai J. Preparation of (perfluoroalkyl)alkane thiols via Zemplén deacylation of fluorous (perfluoroalkyl)alkyl thioacetates. J Fluor Chem 2018. [DOI: 10.1016/j.jfluchem.2018.02.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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24
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Lu J, Lu T, Zhao X, Chen X, Zhan CG. Correlations between the 1H NMR chemical shieldings and the pK a values of organic acids and amines. J Mol Model 2018; 24:146. [PMID: 29858663 DOI: 10.1007/s00894-018-3690-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 05/22/2018] [Indexed: 01/18/2023]
Abstract
The acid dissociation constants and 1H NMR chemical shieldings of organic compounds are important properties that have attracted much research interest. However, few studies have explored the relationship between these two properties. In this work, we theoretically studied the NMR chemical shifts of a series of carboxylic acids and amines in the gas phase and in aqueous solution. It was found that the negative logarithms of the experimental acid dissociation constants (i.e., the pKa values) of the organic acids and amines in aqueous solution correlate almost linearly with the corresponding calculated NMR chemical shieldings. Key factors that affect the theoretically predicted pKa values are discussed in this paper. The present work provides a new way to predict the pKa values of organic/biochemical compounds. Graphical abstract The chemical shielding values of organic acids and amines correlate near linearly with their corresponding pKa values.
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Affiliation(s)
- Juanfeng Lu
- College of Chemistry and Materials Science, South-Central University for Nationalities, Wuhan, 430074, People's Republic of China
| | - Tingting Lu
- College of Chemistry and Materials Science, South-Central University for Nationalities, Wuhan, 430074, People's Republic of China
| | - Xinyun Zhao
- College of Chemistry and Materials Science, South-Central University for Nationalities, Wuhan, 430074, People's Republic of China
| | - Xi Chen
- College of Chemistry and Materials Science, South-Central University for Nationalities, Wuhan, 430074, People's Republic of China.
| | - Chang-Guo Zhan
- College of Pharmacy, University of Kentucky, Lexington, KY, 40536, USA
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25
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Caine BA, Dardonville C, Popelier PLA. Prediction of Aqueous p K a Values for Guanidine-Containing Compounds Using Ab Initio Gas-Phase Equilibrium Bond Lengths. ACS OMEGA 2018; 3:3835-3850. [PMID: 31458625 PMCID: PMC6641350 DOI: 10.1021/acsomega.8b00142] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Accepted: 03/21/2018] [Indexed: 05/06/2023]
Abstract
In this work, we demonstrate the existence of linear relationships between gas-phase equilibrium bond lengths of the guanidine skeleton of 2-(arylamino)imidazolines and their aqueous pK a value. For a training set of 22 compounds, in the most stable conformation of their lowest energy tautomeric form, three bonds were found to exhibit r 2 and q 2 values >0.95 and root-mean-squared-error of estimation values ≤0.25 when regressed individually against pK a. The equations describing these one-bond-length linear relationships, in addition to a multiple linear regression model using all three bond lengths, were then used to predict the experimental pK a values of an external test set of further 27 derivatives. The optimal protocol we derive here shows an overall mean absolute error (MAE) of 0.20 and standard deviation of errors of 0.18 for the test set. Predictions for a second test set of diphenyl-based bis(2-iminoimidazolidines) yielded an MAE of 0.27 and a standard deviation of 0.10. The predictive power of the optimal model is further demonstrated by its ability to correct erroneously reported experimental values. Finally, a previously established guanidine model is recalibrated at a new level of theory, and predictions are made for novel phenylguanidine derivatives, showing an MAE of just 0.29. The protocols established and tested here pass both of Roy's modern and stringent MAE-based criteria for a "good" quantitative structure-activity relationship/quantitative structure-property relationship model predictivity. Notably, the ab initio bond length high correlation subset protocol developed in this work demonstrates lower MAE values than the Marvin program by ChemAxon for all test sets.
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Affiliation(s)
- Beth A. Caine
- Manchester
Institute of Biotechnology (MIB), 131 Princess Street, Manchester M1 7DN, Great Britain
- School
of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, Great
Britain
| | | | - Paul L. A. Popelier
- Manchester
Institute of Biotechnology (MIB), 131 Princess Street, Manchester M1 7DN, Great Britain
- School
of Chemistry, University of Manchester, Oxford Road, Manchester M13 9PL, Great
Britain
- E-mail: . Phone: +44 161
3064511 (P.L.A.P.)
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26
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Lian P, Johnston RC, Parks JM, Smith JC. Quantum Chemical Calculation of pKas of Environmentally Relevant Functional Groups: Carboxylic Acids, Amines, and Thiols in Aqueous Solution. J Phys Chem A 2018; 122:4366-4374. [DOI: 10.1021/acs.jpca.8b01751] [Citation(s) in RCA: 46] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Peng Lian
- UT/ORNL Center for Molecular Biophysics, Biosciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee 37831-6309, United States
| | - Ryne C. Johnston
- UT/ORNL Center for Molecular Biophysics, Biosciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee 37831-6309, United States
| | - Jerry M. Parks
- UT/ORNL Center for Molecular Biophysics, Biosciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee 37831-6309, United States
| | - Jeremy C. Smith
- UT/ORNL Center for Molecular Biophysics, Biosciences Division, Oak Ridge National Laboratory, 1 Bethel Valley Road, Oak Ridge, Tennessee 37831-6309, United States
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27
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Nural Y, Gemili M, Ulger M, Sari H, De Coen LM, Sahin E. Synthesis, antimicrobial activity and acid dissociation constants of methyl 5,5-diphenyl-1-(thiazol-2-yl)pyrrolidine-2-carboxylate derivatives. Bioorg Med Chem Lett 2018; 28:942-946. [DOI: 10.1016/j.bmcl.2018.01.045] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Revised: 01/18/2018] [Accepted: 01/23/2018] [Indexed: 12/19/2022]
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28
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Rossini E, Bochevarov AD, Knapp EW. Empirical Conversion of p K a Values between Different Solvents and Interpretation of the Parameters: Application to Water, Acetonitrile, Dimethyl Sulfoxide, and Methanol. ACS OMEGA 2018; 3:1653-1662. [PMID: 31458485 PMCID: PMC6641400 DOI: 10.1021/acsomega.7b01895] [Citation(s) in RCA: 79] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2017] [Accepted: 01/26/2018] [Indexed: 05/08/2023]
Abstract
An empirical conversion method (ECM) that transforms pK a values of arbitrary organic compounds from one solvent to the other is introduced. We demonstrate the method's usefulness and performance on pK a conversions involving water and organic solvents acetonitrile (MeCN), dimethyl sulfoxide (Me2SO), and methanol (MeOH). We focus on the pK a conversion from the known reference value in water to the other three organic solvents, although such a conversion can also be performed between any pair of the considered solvents. The ECM works with an additive parameter that is specific to a solvent and a molecular family (essentially characterized by a functional group that is titrated). We formally show that the method can be formulated with a single additive parameter, and that the extra multiplicative parameter used in other works is not required. The values of the additive parameter are determined from known pK a data, and their interpretation is provided on the basis of physicochemical concepts. The data set of known pK a values is augmented with pK a values computed with the recently introduced electrostatic transform method, whose validity is demonstrated. For a validation of our method, we consider pK a conversions for two data sets of titratable compounds. The first data set involves 81 relatively small molecules belonging to 19 different molecular families, with the pK a data available in all four considered solvents. The second data set involves 76 titratable molecules from 5 additional molecular families. These molecules are typically larger, and their experimental pK a values are available only in Me2SO and water. The validation tests show that the agreement between the experimental pK a data and the ECM predictions is generally good, with absolute errors often on the order of 0.5 pH units. The presence of a few outliers is rationalized, and observed trends with respect to molecular families are discussed.
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Affiliation(s)
- Emanuele Rossini
- Freie
Universität Berlin, Institute of
Chemistry and Biochemistry, Fabeck Strasse 36A, Berlin D-14195, Germany
- Theoretical
Biophysics, Max Planck Institute of Biophysics, Max-von-Laue-Strasse 3, Frankfurt a. M. 60438, Germany
| | - Art D. Bochevarov
- Schrödinger
Inc, 120 West 45th Street,
17th floor, New York, New
York 10036, United
States
| | - Ernst Walter Knapp
- Freie
Universität Berlin, Institute of
Chemistry and Biochemistry, Fabeck Strasse 36A, Berlin D-14195, Germany
- E-mail: (E.W.K.)
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29
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Yu HS, Watson MA, Bochevarov AD. Weighted Averaging Scheme and Local Atomic Descriptor for pK a Prediction Based on Density Functional Theory. J Chem Inf Model 2018; 58:271-286. [PMID: 29356524 DOI: 10.1021/acs.jcim.7b00537] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
As a continuation of our work on developing a density functional theory-based pKa predictor, we present conceptual improvements to our previously published shell model, which is a hierarchical organization of pKa training sets and which, in principle, covers all chemical space. The improvements concern the way the studied chemical compound is associated with the data points from the training sets. By introducing a new descriptor of the local atomic environment which foregoes dependence on chemical bonding and connectivity, we are able to automatically locate molecules from the training set that are most relevant to the proton dissociation equilibrium under study. This new scheme leads to the prediction of a single pKa value weighted across multiple training sets and thus patches a defect disclosed in the formulation of our previous model. Using the new parametrization approach, the pKa prediction gets rid of outliers reported in previous applications of our approach, eliminates ambiguity in interpreting the results, and improves the overall accuracy. Our new treatment accounts for multiple conformations both on the level of energetics and parametrization. Illustrative results are shown for several types of chemical structures containing guanidine, amidine, amine, and phenol functional groups, and which are representative of practically important large and flexible drug-like molecules. Our method's performance is compared to the performance of other previously published pKa prediction methods. Further possible improvements to the organization of the training sets and the potential application of our new local atomic descriptor to other kinds of parametrizations are discussed.
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Affiliation(s)
- Haoyu S Yu
- Schrödinger, Inc. , 120 West 45th St., New York, New York 10036, United States
| | - Mark A Watson
- Schrödinger, Inc. , 120 West 45th St., New York, New York 10036, United States
| | - Art D Bochevarov
- Schrödinger, Inc. , 120 West 45th St., New York, New York 10036, United States
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30
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Grauffel C, Chu B, Lim C. An efficient protocol for computing the pKa of Zn-bound water. Phys Chem Chem Phys 2018; 20:29637-29647. [DOI: 10.1039/c8cp05029e] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We present an efficient and accurate method for computing absolute pKw values in Zn2+ complexes.
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Affiliation(s)
- Cédric Grauffel
- Institute of Biomedical Sciences
- Academia Sinica
- Taipei 115
- Taiwan
| | - Benjamin Chu
- Department of Biomathematics
- David Geffen School of Medicine at UCLA
- USA
| | - Carmay Lim
- Institute of Biomedical Sciences
- Academia Sinica
- Taipei 115
- Taiwan
- Department of Chemistry
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31
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Pérez-González A, Castañeda-Arriaga R, Verastegui B, Carreón-González M, Alvarez-Idaboy JR, Galano A. Estimation of empirically fitted parameters for calculating pK
a values of thiols in a fast and reliable way. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2179-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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32
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Jones LH. Understanding the chemically-reactive proteome. MOLECULAR BIOSYSTEMS 2017; 12:1728-30. [PMID: 26726011 DOI: 10.1039/c5mb00760g] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The reactivity of amino acid residues in proteins is context-dependent and difficult to predict. Chemical biology can be used to understand the chemical modifications of proteins to help elucidate the nature of the reactive proteome. The resulting insights can be applied to pharmacoproteomics, target identification and molecular pathology.
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Affiliation(s)
- Lyn H Jones
- Worldwide Medicinal Chemistry, Pfizer, 610 Main Street, Cambridge MA, 02139, USA.
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33
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Yang X, Rees RJ, Conway W, Puxty G, Yang Q, Winkler DA. Computational Modeling and Simulation of CO2 Capture by Aqueous Amines. Chem Rev 2017; 117:9524-9593. [PMID: 28517929 DOI: 10.1021/acs.chemrev.6b00662] [Citation(s) in RCA: 68] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Xin Yang
- CSIRO Manufacturing, Bayview Avenue, Clayton 3169, Australia
- College
of Chemistry, Key Lab of Green Chemistry and Technology in Ministry
of Education, Sichuan University, Chengdu 610064, People’s Republic of China
| | - Robert J. Rees
- Data61
- CSIRO, Door 34 Goods
Shed, Village Street, Docklands VIC 3008, Australia
| | | | | | - Qi Yang
- CSIRO Manufacturing, Bayview Avenue, Clayton 3169, Australia
| | - David A. Winkler
- CSIRO Manufacturing, Bayview Avenue, Clayton 3169, Australia
- Monash Institute of Pharmaceutical Sciences, 392 Royal Parade, Parkville 3052, Australia
- Latrobe Institute for Molecular Science, Bundoora 3046, Australia
- School
of
Chemical and Physical Science, Flinders University, Bedford Park 5042, Australia
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34
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Strasser S, Wappl C, Slugovc C. Solvent-free macrocyclisation by nucleophile-mediated oxa-Michael addition polymerisation of divinyl sulfone and alcohols. Polym Chem 2017. [DOI: 10.1039/c7py00152e] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Divinyl sulfone and di- or multifunctional alcohols quantitatively react within minutes under solvent-less conditions upon addition of 4-dimethylaminopyridine.
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Affiliation(s)
- Simone Strasser
- Institute for Chemistry and Technology of Materials
- Graz University of Technology
- A 8010 Graz
- Austria
| | - Christina Wappl
- Institute for Chemistry and Technology of Materials
- Graz University of Technology
- A 8010 Graz
- Austria
| | - Christian Slugovc
- Institute for Chemistry and Technology of Materials
- Graz University of Technology
- A 8010 Graz
- Austria
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35
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Bochevarov AD, Watson MA, Greenwood JR, Philipp DM. Multiconformation, Density Functional Theory-Based pKa Prediction in Application to Large, Flexible Organic Molecules with Diverse Functional Groups. J Chem Theory Comput 2016; 12:6001-6019. [PMID: 27951674 DOI: 10.1021/acs.jctc.6b00805] [Citation(s) in RCA: 88] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Art D. Bochevarov
- Schrödinger, Inc., 120 West 45th Street, New York, New York 10036, United States
| | - Mark A. Watson
- Schrödinger, Inc., 120 West 45th Street, New York, New York 10036, United States
| | - Jeremy R. Greenwood
- Schrödinger, Inc., 120 West 45th Street, New York, New York 10036, United States
| | - Dean M. Philipp
- Schrödinger, Inc., 101 SW Main Street, Suite 1300, Portland, Oregon 97204, United States
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36
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Mazmanian K, Sargsyan K, Grauffel C, Dudev T, Lim C. Preferred Hydrogen-Bonding Partners of Cysteine: Implications for Regulating Cys Functions. J Phys Chem B 2016; 120:10288-10296. [PMID: 27635780 DOI: 10.1021/acs.jpcb.6b08109] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The hydrogen-bonding interactions of cysteine, which can serve as a hydrogen-bond donor and/or acceptor, play a central role in cysteine's diverse functional roles in proteins. They affect the balance between the neutral thiol (SH) or thiolate (S-) and the charge distribution in the rate-limiting transition state of a reaction. Despite their importance, no study has determined the preferred hydrogen-bonding partners of cysteine serving as a hydrogen-bond donor or acceptor. By computing the free energy for displacing a peptide backbone hydrogen-bonded to cysteine with amino acid side chains in various protein environments, we have evaluated how the strength of the hydrogen bond to the cysteine thiol/thiolate depends on its hydrogen-bonding partner and its local environment. The predicted hydrogen-bonding partners preferred by cysteine are consistent with the hydrogen-bonding interactions made by cysteines in 9138 nonredundant X-ray structures. Our results suggest a mechanism to regulate the reactivity of cysteines and a strategy to design drugs based on the hydrogen-bonding preference of cysteine.
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Affiliation(s)
- Karine Mazmanian
- Institute of Biomedical Sciences, Academia Sinica , Taipei 11529, Taiwan.,Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program, Academia Sinica , Taipei 11529, Taiwan.,Institute of Biochemical Sciences, National Taiwan University , Taipei 10617, Taiwan
| | - Karen Sargsyan
- Institute of Biomedical Sciences, Academia Sinica , Taipei 11529, Taiwan
| | - Cédric Grauffel
- Institute of Biomedical Sciences, Academia Sinica , Taipei 11529, Taiwan
| | - Todor Dudev
- Faculty of Chemistry and Pharmacy, Sofia University , Sofia 1164, Bulgaria
| | - Carmay Lim
- Institute of Biomedical Sciences, Academia Sinica , Taipei 11529, Taiwan.,Department of Chemistry, National Tsing Hua University , Hsinchu 300, Taiwan
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37
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Dyla M, Andersen JL, Kjaergaard M, Birkedal V, Terry DS, Altman RB, Blanchard SC, Nissen P, Knudsen CR. Engineering a Prototypic P-type ATPase Listeria monocytogenes Ca(2+)-ATPase 1 for Single-Molecule FRET Studies. Bioconjug Chem 2016; 27:2176-87. [PMID: 27501274 DOI: 10.1021/acs.bioconjchem.6b00387] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Approximately 30% of the ATP generated in the living cell is utilized by P-type ATPase primary active transporters to generate and maintain electrochemical gradients across biological membranes. P-type ATPases undergo large conformational changes during their functional cycle to couple ATP hydrolysis in the cytoplasmic domains to ion transport across the membrane. The Ca(2+)-ATPase from Listeria monocytogenes, LMCA1, was found to be a suitable model of P-type ATPases and was engineered to facilitate single-molecule FRET studies of transport-related structural changes. Mutational analyses of the endogenous cysteine residues in LMCA1 were performed to reduce background labeling without compromising activity. Pairs of cysteines were introduced into the optimized low-reactivity background, and labeled with maleimide derivatives of Cy3 and Cy5 resulting in site-specifically double-labeled protein with moderate activity. Ensemble and confocal single-molecule FRET studies revealed changes in FRET distribution related to structural changes during the transport cycle, consistent with those observed by X-ray crystallography for the sarco/endoplasmic reticulum Ca(2+) ATPase (SERCA). Notably, the cytosolic headpiece of LMCA1 was found to be distinctly more compact in the E1 state than in the E2 state. Thus, the established experimental system should allow future real-time FRET studies of the structural dynamics of LMCA1 as a representative P-type ATPase.
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Affiliation(s)
- Mateusz Dyla
- Centre for Membrane Pumps in Cells and Disease - PUMPKIN. Danish National Research Foundation & Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, and Department of Molecular Biology and Genetics, Aarhus University , Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark.,Interdisciplinary Nanoscience Center (iNANO), Aarhus University , Gustav Wieds Vej 14, DK-8000 Aarhus C, Denmark
| | - Jacob Lauwring Andersen
- Centre for Membrane Pumps in Cells and Disease - PUMPKIN. Danish National Research Foundation & Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, and Department of Molecular Biology and Genetics, Aarhus University , Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark
| | - Magnus Kjaergaard
- Centre for Membrane Pumps in Cells and Disease - PUMPKIN. Danish National Research Foundation & Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, and Department of Molecular Biology and Genetics, Aarhus University , Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark.,Interdisciplinary Nanoscience Center (iNANO), Aarhus University , Gustav Wieds Vej 14, DK-8000 Aarhus C, Denmark.,AIAS, Aarhus Institute of Advanced Studies, Aarhus University , DK-8000 Aarhus C, Denmark
| | - Victoria Birkedal
- Interdisciplinary Nanoscience Center (iNANO), Aarhus University , Gustav Wieds Vej 14, DK-8000 Aarhus C, Denmark
| | - Daniel S Terry
- Department of Physiology and Biophysics, Weill Cornell Medicine , New York, New York 10021, United States
| | - Roger B Altman
- Department of Physiology and Biophysics, Weill Cornell Medicine , New York, New York 10021, United States
| | - Scott C Blanchard
- Department of Physiology and Biophysics, Weill Cornell Medicine , New York, New York 10021, United States
| | - Poul Nissen
- Centre for Membrane Pumps in Cells and Disease - PUMPKIN. Danish National Research Foundation & Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, and Department of Molecular Biology and Genetics, Aarhus University , Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark.,Interdisciplinary Nanoscience Center (iNANO), Aarhus University , Gustav Wieds Vej 14, DK-8000 Aarhus C, Denmark
| | - Charlotte R Knudsen
- Centre for Membrane Pumps in Cells and Disease - PUMPKIN. Danish National Research Foundation & Danish Research Institute of Translational Neuroscience - DANDRITE, Nordic-EMBL Partnership for Molecular Medicine, and Department of Molecular Biology and Genetics, Aarhus University , Gustav Wieds Vej 10C, DK-8000 Aarhus C, Denmark
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38
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Colak B, Da Silva JCS, Soares TA, Gautrot JE. Impact of the Molecular Environment on Thiol–Ene Coupling For Biofunctionalization and Conjugation. Bioconjug Chem 2016; 27:2111-23. [DOI: 10.1021/acs.bioconjchem.6b00349] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
| | - Julio C. S. Da Silva
- Departament
of Fundamental Chemistry, CCEN, Federal University of Pernambuco, Cidade Universitária, 50670-901, Recife, PE, Brazil
| | - Thereza A. Soares
- Departament
of Fundamental Chemistry, CCEN, Federal University of Pernambuco, Cidade Universitária, 50670-901, Recife, PE, Brazil
- Department
of Chemistry, Umeå University, 90187 Umeå, Sweden
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39
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Kromann JC, Larsen F, Moustafa H, Jensen JH. Prediction of pKa values using the PM6 semiempirical method. PeerJ 2016; 4:e2335. [PMID: 27602298 PMCID: PMC4991863 DOI: 10.7717/peerj.2335] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2016] [Accepted: 07/16/2016] [Indexed: 12/11/2022] Open
Abstract
The PM6 semiempirical method and the dispersion and hydrogen bond-corrected PM6-D3H+ method are used together with the SMD and COSMO continuum solvation models to predict pKa values of pyridines, alcohols, phenols, benzoic acids, carboxylic acids, and phenols using isodesmic reactions and compared to published ab initio results. The pKa values of pyridines, alcohols, phenols, and benzoic acids considered in this study can generally be predicted with PM6 and ab initio methods to within the same overall accuracy, with average mean absolute differences (MADs) of 0.6-0.7 pH units. For carboxylic acids, the accuracy (0.7-1.0 pH units) is also comparable to ab initio results if a single outlier is removed. For primary, secondary, and tertiary amines the accuracy is, respectively, similar (0.5-0.6), slightly worse (0.5-1.0), and worse (1.0-2.5), provided that di- and tri-ethylamine are used as reference molecules for secondary and tertiary amines. When applied to a drug-like molecule where an empirical pKa predictor exhibits a large (4.9 pH unit) error, we find that the errors for PM6-based predictions are roughly the same in magnitude but opposite in sign. As a result, most of the PM6-based methods predict the correct protonation state at physiological pH, while the empirical predictor does not. The computational cost is around 2-5 min per conformer per core processor, making PM6-based pKa prediction computationally efficient enough to be used for high-throughput screening using on the order of 100 core processors.
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Affiliation(s)
- Jimmy C Kromann
- Department of Chemistry, University of Copenhagen , Copenhagen , Denmark
| | - Frej Larsen
- Department of Chemistry, University of Copenhagen , Copenhagen , Denmark
| | - Hadeel Moustafa
- Department of Chemistry, University of Copenhagen , Copenhagen , Denmark
| | - Jan H Jensen
- Department of Chemistry, University of Copenhagen , Copenhagen , Denmark
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40
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Rossini E, Netz RR, Knapp EW. Computing pKa Values in Different Solvents by Electrostatic Transformation. J Chem Theory Comput 2016; 12:3360-9. [DOI: 10.1021/acs.jctc.6b00446] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Emanuele Rossini
- Institute
of Chemistry and Biochemistry, Freie Universität Berlin, Fabeckstrasse
36a, D-14195 Berlin, Germany
| | - Roland R. Netz
- Department
of Physics, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany
| | - Ernst-Walter Knapp
- Institute
of Chemistry and Biochemistry, Freie Universität Berlin, Fabeckstrasse
36a, D-14195 Berlin, Germany
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41
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Thapa B, Schlegel HB. Density Functional Theory Calculation of pKa’s of Thiols in Aqueous Solution Using Explicit Water Molecules and the Polarizable Continuum Model. J Phys Chem A 2016; 120:5726-35. [DOI: 10.1021/acs.jpca.6b05040] [Citation(s) in RCA: 120] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Bishnu Thapa
- Chemistry Department, Wayne State University, Detroit, Michigan 48202, United States
| | - H. Bernhard Schlegel
- Chemistry Department, Wayne State University, Detroit, Michigan 48202, United States
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42
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Anstöter C, Caine BA, Popelier PLA. The AIBLHiCoS Method: Predicting Aqueous pKa Values from Gas-Phase Equilibrium Bond Lengths. J Chem Inf Model 2016; 56:471-83. [PMID: 26818245 DOI: 10.1021/acs.jcim.5b00580] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The proposed AIBLHiCoS method predicts a given compound's pKa in aqueous solution from a single ab initio bond length only, after geometry optimization in the gas phase. Here we provide simple and predictive equations for naphthols and chemically similar biomolecules. Each linear equation corresponds to a High-Correlation Subset (HiCoS) that expresses the novel type of linear free energy relationship discovered here. The naphthol family exhibits a clear and strong relationship with the phenol family, with the "active" C-O bond always producing the highest correlations. The proposed method can isolate erroneous experiments and operate in non-aqueous solution and at different temperatures. Moreover, the existence of "active fragments" is demonstrated in a variety of sizable biomolecules for which the pKa is successfully predicted.
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Affiliation(s)
- Cate Anstöter
- Manchester Institute of Biotechnology (MIB) , 131 Princess Street, Manchester M1 7DN, United Kingdom.,School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - Beth A Caine
- Manchester Institute of Biotechnology (MIB) , 131 Princess Street, Manchester M1 7DN, United Kingdom.,School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
| | - Paul L A Popelier
- Manchester Institute of Biotechnology (MIB) , 131 Princess Street, Manchester M1 7DN, United Kingdom.,School of Chemistry, University of Manchester , Oxford Road, Manchester M13 9PL, United Kingdom
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43
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A Test of Various Partial Atomic Charge Models for Computations on Diheteroaryl Ketones and Thioketones. COMPUTATION 2016. [DOI: 10.3390/computation4010003] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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44
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AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules. J Cheminform 2015; 7:50. [PMID: 26500704 PMCID: PMC4613891 DOI: 10.1186/s13321-015-0099-x] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2015] [Accepted: 10/08/2015] [Indexed: 01/24/2023] Open
Abstract
Background Partial atomic charges are a well-established concept, useful in understanding and modeling the chemical behavior of molecules, from simple compounds, to large biomolecular complexes with many reactive sites. Results This paper introduces AtomicChargeCalculator (ACC), a web-based application for the calculation and analysis of atomic charges which respond to changes in molecular conformation and chemical environment. ACC relies on an empirical
method to rapidly compute atomic charges with accuracy comparable to quantum mechanical approaches. Due to its efficient implementation, ACC can handle any type of molecular system, regardless of size and chemical complexity, from drug-like molecules to biomacromolecular complexes with hundreds of thousands of atoms. ACC writes out atomic charges into common molecular structure files, and offers interactive facilities for statistical analysis and comparison of the results, in both tabular and graphical form. Conclusions Due to high customizability and speed, easy streamlining and the unified platform for calculation and analysis, ACC caters to all fields of life sciences, from drug design to nanocarriers. ACC is freely available via the Internet at http://ncbr.muni.cz/ACC. Electronic supplementary material The online version of this article (doi:10.1186/s13321-015-0099-x) contains supplementary material, which is available to authorized users.
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45
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Ortega-Villar N, Guerrero-Estrada AY, Piñeiro-López L, Muñoz MC, Flores-Álamo M, Moreno-Esparza R, Real JA, Ugalde-Saldívar VM. Spin Crossover Behavior in a Series of Iron(III) Alkoxide Complexes. Inorg Chem 2015; 54:3413-21. [DOI: 10.1021/ic503081x] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Norma Ortega-Villar
- Facultad
de Química, Universidad Nacional Autónoma de México, Edificio
B, Av. Universidad 3000, Coyoacán, 04510 México, D.F., México
| | - Areli Yesareth Guerrero-Estrada
- Facultad
de Química, Universidad Nacional Autónoma de México, Edificio
B, Av. Universidad 3000, Coyoacán, 04510 México, D.F., México
| | - Lucía Piñeiro-López
- Institut
de Ciencia Molecular (ICMol), Universitat de València, C/Catedrático
José Beltrán Martinez no. 2, 46980 Paterna, Valencia, Spain
| | - M. Carmen Muñoz
- Departament
de Física Aplicada, Universitat Politècnica de València, Camino
de Vera s/n, E-46022 València, Spain
| | - Marcos Flores-Álamo
- Facultad
de Química, Universidad Nacional Autónoma de México, Edificio
B, Av. Universidad 3000, Coyoacán, 04510 México, D.F., México
| | - Rafael Moreno-Esparza
- Facultad
de Química, Universidad Nacional Autónoma de México, Edificio
B, Av. Universidad 3000, Coyoacán, 04510 México, D.F., México
| | - José A. Real
- Institut
de Ciencia Molecular (ICMol), Universitat de València, C/Catedrático
José Beltrán Martinez no. 2, 46980 Paterna, Valencia, Spain
| | - Víctor M. Ugalde-Saldívar
- Facultad
de Química, Universidad Nacional Autónoma de México, Edificio
B, Av. Universidad 3000, Coyoacán, 04510 México, D.F., México
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46
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Vanpoucke DEP, Oláh J, De Proft F, Van Speybroeck V, Roos G. Convergence of Atomic Charges with the Size of the Enzymatic Environment. J Chem Inf Model 2015; 55:564-71. [DOI: 10.1021/ci5006417] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Danny E. P. Vanpoucke
- Center
for Molecular Modeling (CMM), Ghent University, Technologiepark 903, 9052 Zwijnaarde, Belgium
| | - Julianna Oláh
- Department
of Inorganic and Analytical Chemistry, Budapest University of Technology and Economics, Szent Gellért tér 4, 1111 Budapest, Hungary
| | - Frank De Proft
- Department
of General Chemistry, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
| | - Veronique Van Speybroeck
- Center
for Molecular Modeling (CMM), Ghent University, Technologiepark 903, 9052 Zwijnaarde, Belgium
| | - Goedele Roos
- Department
of General Chemistry, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
- Department
of Structural Biology of the VIB and Structural Biology Brussels, Vrije Universiteit Brussel, Pleinlaan 2, 1050 Brussels, Belgium
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47
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Strasser S, Slugovc C. Nucleophile-mediated oxa-Michael addition reactions of divinyl sulfone – a thiol-free option for step-growth polymerisations. Catal Sci Technol 2015. [DOI: 10.1039/c5cy01527h] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first example of an aa–bb-type nucleophile-mediated oxa-Michael addition polymerisation reaction is reported.
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Affiliation(s)
- Simone Strasser
- Institute for Chemistry and Technology of Materials
- Graz University of Technology
- NAWI Graz
- A-8010 Graz
- Austria
| | - Christian Slugovc
- Institute for Chemistry and Technology of Materials
- Graz University of Technology
- NAWI Graz
- A-8010 Graz
- Austria
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