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Sun X, Chen Q, Häggblom MM, Liu G, Kong T, Huang D, Chen Z, Li F, Li B, Sun W. Microbially mediated sulfur oxidation coupled with arsenate reduction within oligotrophic mining-impacted habitats. THE ISME JOURNAL 2024; 18:wrae110. [PMID: 38900902 PMCID: PMC11283718 DOI: 10.1093/ismejo/wrae110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2024] [Revised: 05/09/2024] [Accepted: 06/19/2024] [Indexed: 06/22/2024]
Abstract
Arsenate [As(V)] reduction is a major cause of arsenic (As) release from soils, which threatens more than 200 million people worldwide. While heterotrophic As(V) reduction has been investigated extensively, the mechanism of chemolithotrophic As(V) reduction is less studied. Since As is frequently found as a sulfidic mineral in the environment, microbial mediated sulfur oxidation coupled to As(V) reduction (SOAsR), a chemolithotrophic process, may be more favorable in sites impacted by oligotrophic mining (e.g. As-contaminated mine tailings). While SOAsR is thermodynamically favorable, knowledge regarding this biogeochemical process is still limited. The current study suggested that SOAsR was a more prevalent process than heterotrophic As(V) reduction in oligotrophic sites, such as mine tailings. The water-soluble reduced sulfur concentration was predicted to be one of the major geochemical parameters that had a substantial impact on SOAsR potentials. A combination of DNA stable isotope probing and metagenome binning revealed members of the genera Sulfuricella, Ramlibacter, and Sulfuritalea as sulfur oxidizing As(V)-reducing bacteria (SOAsRB) in mine tailings. Genome mining further expanded the list of potential SOAsRB to diverse phylogenetic lineages such as members associated with Burkholderiaceae and Rhodocyclaceae. Metagenome analysis using multiple tailing samples across southern China confirmed that the putative SOAsRB were the dominant As(V) reducers in these sites. Together, the current findings expand our knowledge regarding the chemolithotrophic As(V) reduction process, which may be harnessed to facilitate future remediation practices in mine tailings.
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Affiliation(s)
- Xiaoxu Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Qizhi Chen
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 511443, China
| | - Max M Häggblom
- Department of Biochemistry and Microbiology, Rutgers University, New Brunswick, NJ 08901, United States
| | - Guoqiang Liu
- Guangdong Key Laboratory of Environmental Pollution and Health, School of Environment, Jinan University, Guangzhou 511443, China
| | - Tianle Kong
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- College of Environmental Science and Engineering, Donghua University, Shanghai 201620, China
| | - Duanyi Huang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, China
| | - Zhenyu Chen
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- School of Environment, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Henan Normal University, Xinxiang 453007, China
| | - Fangbai Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Baoqin Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Institute of Eco-environmental and Soil Sciences, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
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Jroundi F, Povedano-Priego C, Pinel-Cabello M, Descostes M, Grizard P, Purevsan B, Merroun ML. Evidence of microbial activity in a uranium roll-front deposit: Unlocking their potential role as bioenhancers of the ore genesis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 861:160636. [PMID: 36464038 DOI: 10.1016/j.scitotenv.2022.160636] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 11/26/2022] [Accepted: 11/28/2022] [Indexed: 06/17/2023]
Abstract
Uranium (U) roll-front deposits constitute a valuable source for an economical extraction by in situ recovery (ISR) mining. Such technology may induce changes in the subsurface microbiota, raising questions about the way their activities could build a functional ecosystem in such extreme environments (i.e.: oligotrophy and high SO4 concentration and salinity). Additionally, more information is needed to dissipate the doubts about the microbial role in the genesis of such U orebodies. A U roll-front deposit hosted in an aquifer driven system (in Zoovch Ovoo, Mongolia), intended for mining by acid ISR, was previously explored and showed to be governed by a complex bacterial diversity, linked to the redox zonation and the geochemical conditions. Here for the first time, transcriptional activities of microorganisms living in such U ore deposits are determined and their metabolic capabilities allocated in the three redox-inherited compartments, naturally defined by the roll-front system. Several genes encoding for crucial metabolic pathways demonstrated a strong biological role controlling the subsurface cycling of many elements including nitrate, sulfate, metals and radionuclides (e.g.: uranium), through oxidation-reduction reactions. Interestingly, the discovered transcriptional behaviour gives important insights into the good microbial adaptation to the geochemical conditions and their active contribution to the stabilization of the U ore deposits. Overall, evidences on the importance of these microbial metabolic activities in the aquifer system are discussed that may clarify the doubts on the microbial role in the genesis of low-temperature U roll-front deposits, along the Zoovch Ovoo mine.
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Affiliation(s)
- Fadwa Jroundi
- Department of Microbiology, Faculty of Science, University of Granada, Avda. Fuentenueva s/n, 18071 Granada, Spain.
| | - Cristina Povedano-Priego
- Department of Microbiology, Faculty of Science, University of Granada, Avda. Fuentenueva s/n, 18071 Granada, Spain
| | - María Pinel-Cabello
- Department of Microbiology, Faculty of Science, University of Granada, Avda. Fuentenueva s/n, 18071 Granada, Spain
| | - Michael Descostes
- ORANO Mining, 125 Avenue de Paris, 92330 Châtillon, France; Centre de Géosciences, MINES ParisTech, PSL University, 35 rue St Honoré, 77300 Fontainebleau, France
| | - Pierre Grizard
- ORANO Mining, 125 Avenue de Paris, 92330 Châtillon, France
| | - Bayaarma Purevsan
- Badrakh Energy LLC, Jamyan Gun Avenue - 9, Sukhbaatar district, 1st khoroo, UB-14240, Mongolia
| | - Mohamed L Merroun
- Department of Microbiology, Faculty of Science, University of Granada, Avda. Fuentenueva s/n, 18071 Granada, Spain
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Khanna K, Kohli SK, Kumar P, Ohri P, Bhardwaj R, Alam P, Ahmad P. Arsenic as hazardous pollutant: Perspectives on engineering remediation tools. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:155870. [PMID: 35568183 DOI: 10.1016/j.scitotenv.2022.155870] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Revised: 05/07/2022] [Accepted: 05/08/2022] [Indexed: 06/15/2023]
Abstract
Arsenic (As) is highly toxic metal (loid) that impairs plant growth and proves fatal towards human population. It disrupts physiological, biochemical and molecular attributes of plants associated with water/nutrient uptake, redox homeostasis, photosynthetic machineries, cell/membrane damage, and ATP synthesis. Numerous transcription factors are responsive towards As through regulating stress signaling, toxicity and resistance. Additionally, characterization of specific genes encoding uptake, translocation, detoxification and sequestration has also explained their underlying mechanisms. Arsenic within soil enters the food chain and cause As-poisoning. Plethora of conventional methods has been used since decades to plummet As-toxicity, but the success rate is quite low due to environmental hazards. Henceforth, exploration of effective and eco-friendly methods is aimed for As-remediation. With the technological advancements, we have enumerated novel strategies to address this concern for practicing such techniques on global scale. Novel strategies such as bioremediation, phytoremediation, mycorrhizae-mediated remediation, biochar, algal-remediation etc. possess extraordinary results. Moreover, nitric oxide (NO), a signaling molecule has also been explored in relieving As-stress through reducing oxidative damages and triggering antioxidative responses. Other strategies such as role of plant hormones (salicylic acid, indole-3-acetic acid, jasmonic acid) and micro-nutrients such as selenium have also been elucidated in As-remediation from soil. This has been observed through stimulated antioxidant activities, gene expression of transporters, defense genes, cell-wall modifications along with the synthesis of chelating agents such as phytochelatins and metallothioneins. This review encompasses the updated information about As toxicity and its remediation through novel techniques that serve to be the hallmarks for stress revival. We have summarised the genetic engineering protocols, biotechnological as well as nanotechnological applications in plants to combat As-toxicity.
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Affiliation(s)
- Kanika Khanna
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, Punjab, India; Department of Microbiology, D.A.V University, Sarmastpur, Jalandhar 144001, Punjab, India.
| | - Sukhmeen Kaur Kohli
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, Punjab, India
| | - Pankaj Kumar
- Department of Chemical Engineering, D.A.V University, Sarmastpur, Jalandhar 144001, Punjab, India
| | - Puja Ohri
- Department of Zoology, Guru Nanak Dev University, Amritsar 143005, Punjab, India
| | - Renu Bhardwaj
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143005, Punjab, India
| | - Pravej Alam
- Biology Department, College of Science and Humanities, Prince Sattam bin Abdulaziz University (PSAU), Alkharj, Saudi Arabia
| | - Parvaiz Ahmad
- Department of Botany, GDC Pulwama, 192301, Jammu and Kashmir, India.
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DeVore CL, Rodriguez-Freire L, Villa N, Soleimanifar M, Gonzalez-Estrella J, Ali AMS, Lezama-Pacheco J, Ducheneaux C, Cerrato JM. Mobilization of As, Fe, and Mn from Contaminated Sediment in Aerobic and Anaerobic Conditions: Chemical or Microbiological Triggers? ACS EARTH & SPACE CHEMISTRY 2022; 6:1644-1654. [PMID: 36238447 PMCID: PMC9555341 DOI: 10.1021/acsearthspacechem.1c00370] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
We integrated aqueous chemistry, spectroscopy, and microbiology techniques to identify chemical and microbial processes affecting the release of arsenic (As), iron (Fe), and manganese (Mn) from contaminated sediments exposed to aerobic and anaerobic conditions. The sediments were collected from Cheyenne River Sioux Tribal lands in South Dakota, which has dealt with mining legacy for several decades. The range of concentrations of total As measured from contaminated sediments was 96 to 259 mg kg-1, which co-occurs with Fe (21 000-22 005 mg kg-1) and Mn (682-703 mg kg-1). The transition from aerobic to anaerobic redox conditions yielded the highest microbial diversity, and the release of the highest concentrations of As, Fe, and Mn in batch experiments reacted with an exogenous electron donor (glucose). The reduction of As was confirmed by XANES analyses when transitioning from aerobic to anaerobic conditions. In contrast, the releases of As, Fe and Mn after a reaction with phosphate was at least 1 order of magnitude lower compared with experiments amended with glucose. Our results indicate that mine waste sediments amended with an exogenous electron donor trigger microbial reductive dissolution caused by anaerobic respiration. These dissolution processes can affect metal mobilization in systems transitioning from aerobic to anaerobic conditions in redox gradients. Our results are relevant for natural systems, for surface and groundwater exchange, or other systems in which metal cycling is influenced by chemical and biological processes.
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Affiliation(s)
- Cherie L DeVore
- Department of Civil, Construction & Environmental Engineering, MSC01 1070, University of New Mexico, Albuquerque, New Mexico 87131, United States; Department of Earth Systems Science, Stanford University, Stanford, California 94305, United States
| | - Lucia Rodriguez-Freire
- Department of Civil & Environmental Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Noelani Villa
- Department of Civil, Construction & Environmental Engineering, MSC01 1070, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Maedeh Soleimanifar
- Department of Civil & Environmental Engineering, New Jersey Institute of Technology, Newark, New Jersey 07102, United States
| | - Jorge Gonzalez-Estrella
- Department of Civil, Construction & Environmental Engineering, MSC01 1070, University of New Mexico, Albuquerque, New Mexico 87131, United States; School of Civil and Environmental Engineering, Oklahoma State University, Stillwater, Oklahoma 74078, United States
| | - Abdul Mehdi S Ali
- Department of Earth and Planetary Sciences, MSC03 2040, University of New Mexico, Albuquerque, New Mexico 87131, United States
| | - Juan Lezama-Pacheco
- Department of Earth Systems Science, Stanford University, Stanford, California 94305, United States
| | - Carlyle Ducheneaux
- Department of Environment and Natural Resources, Cheyenne River Sioux Tribe, Eagle Butte, South Dakota 57625, United States
| | - José M Cerrato
- Department of Civil, Construction & Environmental Engineering, MSC01 1070, University of New Mexico, Albuquerque, New Mexico 87131, United States
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Cao W, Gong J, Zeng G, Qin M, Qin L, Zhang Y, Fang S, Li J, Tang S, Chen Z. Impacts of typical engineering nanomaterials on the response of rhizobacteria communities and rice (Oryza sativa L.) growths in waterlogged antimony-contaminated soils. JOURNAL OF HAZARDOUS MATERIALS 2022; 430:128385. [PMID: 35152103 DOI: 10.1016/j.jhazmat.2022.128385] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Revised: 01/24/2022] [Accepted: 01/26/2022] [Indexed: 06/14/2023]
Abstract
The combined eco-risks of Sb (widely presented in soils, especially nearing mining areas) and the engineering nanomaterials (ENMs) (applied in agriculture and soil remediation) still remain uncovered. The current study investigated the impacts of single and combined exposure of CuO, CeO2 nanoparticles (NPs) and multi-walled carbon nanotube (MWCNTs) with Sb on rice growths and rhizosphere bacterial communities. The results showed that co-exposure of CuO NPs (0.075 wt%) with Sb (III) posed the most adverse impacts on root biomass and branches (up to 66.59% and 70.00% compared to other treatments, respectively). Treatments containing MWCNTs showed insignificant dose-dependent effects, while CeO2 NPs combined with Sb (III) showed significant synergistic stimulating effects on the fresh weights of root and shoot, by 68.30% and 73.48% (p < 0.05) compared to single Sb exposure, respectively. The rice planting increased the percentage of non-specifically sorbed Sb in soils by 1.50-14.49 than the no-planting stage. Analysis on microbial communities revealed that co-exposure of CuO NPs with Sb (III) induced the greatest adverse impacts on rhizobacteria abundances and community structures at both phylum and genus levels. Therein, significant decrease of Bacteroidetes, Acidobacteria and increase of Firmicutes abundance at the phylum level were observed. This study provided information about the risks of different ENMs released to Sb-contaminated soils under flooded condition on both crops and bacterial communities.
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Affiliation(s)
- Weicheng Cao
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Jilai Gong
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China; State Environmental Protection Key Laboratory of Monitoring for Heavy Metal Pollutants, Changsha 410082, PR China.
| | - Guangming Zeng
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Meng Qin
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Lei Qin
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Yiqiu Zhang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Siyuan Fang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Juan Li
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Siqun Tang
- College of Environmental Science and Engineering, Hunan University, Changsha 410082, PR China; Key Laboratory of Environmental Biology and Pollution Control, Hunan University, Ministry of Education, Changsha 410082, PR China
| | - Zengping Chen
- State Key Laboratory for Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, PR China
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Al-Ansari MM. Influence of blue light on effective removal of arsenic by photosynthetic bacterium Rhodobacter sp. BT18. CHEMOSPHERE 2022; 292:133399. [PMID: 34952019 DOI: 10.1016/j.chemosphere.2021.133399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Revised: 12/16/2021] [Accepted: 12/20/2021] [Indexed: 06/14/2023]
Abstract
Arsenic (As) contamination in an ecosystem has been a serious threat for the ecosystem as well as human health. Thus, the present study was established an eco-friendly remediation of As by using As resistant Rhodobacter sp. Accordingly, the growth of Rhodobacter sp. in As stress environment was assessed. Expectedly, enhanced growth order of the Rhodobacter sp., under As stress was found to be control >50 > 100 > 200 > 300 > 400 > 500 mg/L of As. In addition, the present study explored the influence of various light sources (Yellow, light blue, red, green and white) on growth and As removal mechanisms of Rhodobacter sp. The growth profile of the bacteria indicated that the light blue source showed an enhanced growth at 72 h of incubation. Based on optimization experiments, an increased As removal percentage rate was found to be at 87.5% at pH 7.0, 3% of glucose, 1% of citrate supplemented in the medium. The As resistant genetic pattern for arsenic transformation, the genes arsenate reductase (arsC), arsenite oxidase (aio) was investigated. To study the transcript level expression of arsC and aio genes were performed after exposure to different concentrations of As (50, 100, 150, and 200 mg/L) at different time intervals (24, 48, 72 and 96 h). The results showed that both arsC and aio were up regulated from 24 to 72 h and the down regulation was observed at 96 h. The obtained results indicated that the Rhodobacter sp., possess significant AS tolerance and removal potential would make it is a noteworthy candidate for future As remediation practices.
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Affiliation(s)
- Mysoon M Al-Ansari
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, 11451, Saudi Arabia.
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Tripti K, Shardendu S. Efficiency of arsenic remediation from growth medium through Bacillus licheniformis modulated by phosphate (PO 4) 3- and nitrate (NO 3) - enrichment. Arch Microbiol 2021; 203:4081-4089. [PMID: 34052893 DOI: 10.1007/s00203-021-02392-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2020] [Revised: 05/17/2021] [Accepted: 05/20/2021] [Indexed: 10/20/2022]
Abstract
Bacillus licheniformis DAS-1 and DAS-2 were found as potent tool for removal/uptake of arsenic [As(V) and As(III)] and reduction [(As(V) to As(III)] of arsenic from the liquid growth medium in our previous studies. Present work gives light on modulation of arsenic remediation (in terms of uptake and reduction) by two selected essential soil nutrients, phosphate (PO4)3- and nitrate (NO3)-. PO43- has structural analogy with arsenate [AsO43-/As(V)] that compete with cell uptake of As(V). It was found that enrichment of 0.75 mM of PO43- had significantly moderated the As(V) toxicity in liquid broth culture by retarding As(V) uptake. Lowering level of PO43- can lead to increase in As(V) removal from medium and vice versa. NO3- has strong oxidant properties which controls As(III) oxidation into As(V) in medium that resulted less toxicity favouring growth of bacteria and also more uptake via phosphate transporters. Hence, accelerated As(III) uptake has shown on enrichment of 0.5 mM of NO3- in medium. All the results of work give evidence that appropriate enrichment of PO43- and NO3- into liquid growth medium, can significantly contribute in alteration of efficiency for arsenic removal/uptake and reduction by bacteria from the medium.
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Affiliation(s)
- Kumari Tripti
- Laboratory of Environment and Biotechnology, Department of Botany, Patna Science College, Patna University, Patna, 800005, India.
| | - Shardendu Shardendu
- Laboratory of Environment and Biotechnology, Department of Botany, Patna Science College, Patna University, Patna, 800005, India
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Tang X, Zou L, Su S, Lu Y, Zhai W, Manzoor M, Liao Y, Nie J, Shi J, Ma LQ, Xu J. Long-Term Manure Application Changes Bacterial Communities in Rice Rhizosphere and Arsenic Speciation in Rice Grains. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:1555-1565. [PMID: 33449628 DOI: 10.1021/acs.est.0c03924] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Bioavailability and speciation of arsenic (As) are impacted by fertilization and bacteria in the rice rhizosphere. In this study, we investigated the effects of long-term manure application on As bioavailability, microbial community structure, and functional genes in a rice paddy field. The results showed that manure application did not affect total As in the soil but increased soluble As forms by 19%, increasing arsenite (As(III)) accumulation in rice grains and roots by 34 and 64% compared to a control. A real-time quantitative polymerase chain reaction (qPCR) and high-throughput sequencing analysis demonstrated that manure application increased the relative abundance of Rhizobium, Burkholderia, Sphingobium, and Sphingomonas containing arsenate reductase genes (arsC) in the rhizosphere soil, consistent with the 529% increase in arsC, which may have promoted arsenate (As(V)) reduction and increased As availability in pore water. In addition, manure application significantly altered the iron (Fe)-plaque microbial community structure and diversity. The microbes, particularly, Bradyrhizobium, Burkholderia, and Ralstonia, were mostly associated with As, Fe, and sulfur (S) cycles. This result was consistent with changes in the functional genes related to As, Fe, and S transformation. Although manure application promoted As(V) reduction (arsC) in Fe-plaque by 682%, it inhibited Fe and S reduction by decreasing FeIII reduction bacteria (Geobacteraceae) and the sulfate-reducing gene (dsrA) abundance. Further, manure application changed the composition of the microbial community that contained the arsC gene. In short, caution needs to be excised even in the soil with a low As concentration as manure application increased As(III) accumulation in rice grains.
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Affiliation(s)
- Xianjin Tang
- MOE Key Lab of Environmental Remediation and Ecosystem Health, and Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Lina Zou
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Shiming Su
- Key Laboratory of Agro-Environment, Ministry of Agriculture, Institute of Environment and Sustainable Development in Agriculture, Chinese Academy of Agricultural Sciences, Beijing 100081, China
| | - Yanhong Lu
- Soil and Fertilizer Institute of Hunan Province, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Weiwei Zhai
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Maria Manzoor
- MOE Key Lab of Environmental Remediation and Ecosystem Health, and Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Yulin Liao
- Soil and Fertilizer Institute of Hunan Province, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Jun Nie
- Soil and Fertilizer Institute of Hunan Province, Hunan Academy of Agricultural Sciences, Changsha 410125, China
| | - Jiyan Shi
- MOE Key Lab of Environmental Remediation and Ecosystem Health, and Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Lena Q Ma
- MOE Key Lab of Environmental Remediation and Ecosystem Health, and Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
| | - Jianming Xu
- MOE Key Lab of Environmental Remediation and Ecosystem Health, and Institute of Soil and Water Resources and Environmental Science, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
- Zhejiang Provincial Key Laboratory of Agricultural Resources and Environment, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, China
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Li W, Liu J, Hudson-Edwards KA. Seasonal variations in arsenic mobility and bacterial diversity: The case study of Huangshui Creek, Shimen Realgar Mine, Hunan Province, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 749:142353. [PMID: 33370914 DOI: 10.1016/j.scitotenv.2020.142353] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Revised: 09/09/2020] [Accepted: 09/09/2020] [Indexed: 06/12/2023]
Abstract
Rivers throughout the world have been contaminated by arsenic dispersed from mining activities. The biogeochemical cycling of this arsenic has been shown to be due to factors such as pH, Eh, ionic strength and microbial activity, but few studies have examined the effects of both seasonal changes and microbial community structure on arsenic speciation and flux in mining-affected river systems. To address this research gap, a study was carried out in Huangshui Creek, Hunan province, China, which has been severely impacted by long-term historic realgar (α-As4S4) mining. Water and sediment sampling, and batch experiments at different temperatures using creek sediment, were used to determine the form, source and mobility of arsenic. Pentavalent (AsO43) and trivalent arsenic (AsO33-) were the dominant aqueous species (70-89% and 30-11%, respectively) in the creek, and the maximum concentration of inorganic arsenic in surface water was 10,400 μg/L. Dry season aqueous arsenic concentrations were lower than those in the wet season samples. The sediments contained both arsenate and arsenite, and relative proportions of these varied with season. 8.3 tons arsenic per annum were estimated to be exported from Huangshui Creek. Arsenic release from sediment increased by 3 to 5 times in high water temperature batch experiments (25 and 37 °C) compared to those carried out at low temperature (8 °C). Our data suggest that the arsenic-containing sediments were the main source of arsenic contamination in Huangshui Creek. Microbial community structured varied at the different sample sites along the creek. Redundancy analysis (RDA) showed that both temperature and arsenic concentrations were the main controlling factors on the structure of the microbial community. Protecbacteria, Bacteroidetes, Cyanobacteria, Firmicutes, Verrucomicrobia, and Planctomycetes were the stable dominant phyla in both dry and wet seasons. The genera Flavobacterium, Hydrogenophaga and Sphingomonas occurred in the most highly arsenic contaminated sites, which removed arsenic by related metabolism.Our findings indicate that seasonal variations profoundly control arsenic flux and species, microbial community structure and ultimately, the biogeochemical fate of arsenic.
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Affiliation(s)
- Wenxu Li
- The Key Laboratory of Solid Waste Treatment and Resource Recycle, Ministry of Education, Southwest University of Science and Technology, Mianyang 621010, China
| | - Jing Liu
- College of Resources and Environment, Southwest University, Chongqing 400716, China.
| | - Karen A Hudson-Edwards
- Environment & Sustainability Institute and Camborne School of Mines, University of Exeter, Penryn, Cornwall TR10 9DF, UK.
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Seraj MF, Rahman T, Lawrie AC, Reichman SM. Assessing the Plant Growth Promoting and Arsenic Tolerance Potential of Bradyrhizobium japonicum CB1809. ENVIRONMENTAL MANAGEMENT 2020; 66:930-939. [PMID: 32918111 DOI: 10.1007/s00267-020-01351-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/08/2020] [Accepted: 08/21/2020] [Indexed: 06/11/2023]
Abstract
Accumulation of heavy metals in soil is of concern to the agricultural production sector, because of the potential threat to food quality and quantity. Inoculation with plant growth-promoting bacteria (PGPR) has previously been shown to alleviate heavy metal stress but the mechanisms are unclear. Potential mechanisms by which inoculation with Bradyrhizobium japonicum CB1809 affected the legume soybean (Glycine max cv. Zeus) and the non-legume sunflower (Helianthus annus cv. Hyoleic 41) were investigated in solution culture under 5 μM As stress. Adding As resulted in As tissue concentrations of up to 5 mg kg-1 (shoots) and 250 mg kg-1 (roots) in both species but did not reduce shoot or root biomass. Inoculation increased root biomass but only in the legume (soybean) and only with As. Inoculation resulted in large (up to 100%) increases in siderophore concentration but relatively small changes (±10-15%) in auxin concentration in the rhizosphere. However, the increase in siderophore concentration in the rhizosphere did not result in the expected increases in tissue N or Fe, especially in soybean, suggesting that their function was different. In conclusion, siderophores and auxins may be some of the mechanisms by which both soybean and sunflower maintained plant growth in As-contaminated media.
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Affiliation(s)
- Md Ferdous Seraj
- School of Engineering, RMIT University, Melbourne, VIC, Australia
- Department of Environmental Science and Management, North South University, Dhaka, Bangladesh
| | - Tania Rahman
- Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh
| | - Ann C Lawrie
- School of Science, RMIT University, Bundoora, VIC, Australia
| | - Suzie M Reichman
- School of Engineering, RMIT University, Melbourne, VIC, Australia.
- Centre for Anthropogenic Pollution Impact and Management, School of BioSciences, University of Melbourne, Parkville, VIC, Australia.
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11
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Sun X, Xu R, Dong Y, Li F, Tao W, Kong T, Zhang M, Qiu L, Wang X, Sun W. Investigation of the Ecological Roles of Putative Keystone Taxa during Tailing Revegetation. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:11258-11270. [PMID: 32786562 DOI: 10.1021/acs.est.0c03031] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Metal contamination released from tailings is a global environmental concern. Although phytoremediation is a promising remediation method, its practice is often impeded by the adverse tailing geochemical conditions, which suppress biological activities. The ecosystem services provided by indigenous microorganisms could alter environmental conditions and facilitate revegetation in tailings. During the process, the keystone taxa of the microbial community are assumed an essential role in regulating the community composition and functions. The identity and the environmental functions of the keystone taxa during tailing revegetation, however, remain unelucidated. The current study compared the microbial community composition and interactions of two contrasting stibnite (Sb2S3) tailings, one revegetated and one unvegetated. The microbial interaction networks and keystone taxa were significantly different in the two tailings. Similar keystone taxa were also identified in other revegetated tailings, but not in their corresponding unvegetated tailings. Metagenome-assembled genomes (MAGs) indicated that the keystone taxa in the revegetated tailing may use both organic and inorganic energy sources (e.g., sulfur, arsenic, and antimony). They could also facilitate plant growth since a number of plant-growth-promoting genes, including phosphorus solubilization and siderophore production genes, were encoded. The current study suggests that keystone taxa may play important roles in tailing revegetation by providing nutrients, such as P and Fe, and promoting plant growth.
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Affiliation(s)
- Xiaoxu Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Rui Xu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Yiran Dong
- School of Environmental Studies, China University of Geosciences (Wuhan), Wuhan 430074, China
| | - Fangbai Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Wan Tao
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Tianle Kong
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Miaomiao Zhang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Lang Qiu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Xiaoyu Wang
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
- Guangdong-Hong Kong-Macao Joint Laboratory for Environmental Pollution and Control, Guangzhou 510650, China
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Rahman Z, Singh VP. Bioremediation of toxic heavy metals (THMs) contaminated sites: concepts, applications and challenges. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:27563-27581. [PMID: 32418096 DOI: 10.1007/s11356-020-08903-0] [Citation(s) in RCA: 59] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2019] [Accepted: 04/15/2020] [Indexed: 06/11/2023]
Abstract
Heavy metal contamination is a global issue, where the prevalent contaminants are arsenic (As), cadmium (Cd), chromium (Cr)(VI), mercury (Hg), and lead (Pb). More often, they are collectively known as "most problematic heavy metals" and "toxic heavy metals" (THMs). Their treatment through a variety of biological processes is one of the prime interests in remediation studies, where heavy metal-microbe interaction approaches receive high interest for their cost effective and ecofriendly solutions. In this review, we provide an up to date information on different microbial processes (bioremediation) for the removal of THMs. For the same, emphasis is put on oxidation-reduction, biomineralization, bioprecipitation, bioleaching, biosurfactant technology, biovolatilization, biosorption, bioaccumulation, and microbe-assisted phytoremediation with their selective advantages and disadvantages. Further, the literature briefly discusses about the various setups of cleaning processes of THMs in environment under ex situ and in situ applications. Lately, the study sheds light on the manipulation of microorganisms through genetic engineering and nanotechnology for their advanced treatment approaches.
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Affiliation(s)
- Zeeshanur Rahman
- Department of Botany, Zakir Husain Delhi College, University of Delhi, Delhi, India.
- Department of Botany, University of Delhi, Delhi, India.
| | - Ved Pal Singh
- Department of Botany, University of Delhi, Delhi, India
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13
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Yuan C, Qiao J, Li F, Zhang X, Du Y, Hu M, Sun W. Community dynamics of As(V)-reducing and As(III)-oxidizing genes during a wet-dry cycle in paddy soil amended with organic matter, gypsum, or iron oxide. JOURNAL OF HAZARDOUS MATERIALS 2020; 393:122485. [PMID: 32193132 DOI: 10.1016/j.jhazmat.2020.122485] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 03/05/2020] [Accepted: 03/05/2020] [Indexed: 06/10/2023]
Abstract
Microbe-mediated redox transformations regulate arsenic mobility in paddy soil. However, the community dynamics of the related genes, which might be affected by soil ameliorants, have not been systematically investigated during a wet-dry cycle. This study incubated arsenic-contaminated paddy soil amended with organic matter (OM), gypsum, or hematite in microcosms under alternate watering conditions. Added gypsum and hematite reduced arsenic mobility in the soil by 8-60% during the wet and dry periods. However, added OM increased arsenic mobility by 70-130% during the first 4 weeks (not the last 4 weeks) of submergence and the dry period. The results of quantitative real-time polymerase chain reaction (qPCR) depended heavily on the primers used, so the contribution of relevant genes to arsenic transformation cannot be compared using only the gene abundance assessed by qPCR. However, correlation analyses showed that the abundance and community members of the arrA gene, which mediates dissimilatory As(V) reduction [i.e., As(V) respiration], were related to soil arsenic concentrations. This was not the case for the arsC gene, which mediates cytoplasmic As(V) reduction, or the aioA gene, which mediates As(III) oxidation. These suggest that the dissimilatory pathway was mainly responsible for arsenic reduction and release in the soil studied.
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Affiliation(s)
- Chaolei Yuan
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Jiangtao Qiao
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Fangbai Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China.
| | - Xiaofeng Zhang
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Yanhong Du
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Min Hu
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Weimin Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
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14
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McDermott TR, Stolz JF, Oremland RS. Arsenic and the gastrointestinal tract microbiome. ENVIRONMENTAL MICROBIOLOGY REPORTS 2020; 12:136-159. [PMID: 31773890 DOI: 10.1111/1758-2229.12814] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Revised: 11/23/2019] [Accepted: 11/25/2019] [Indexed: 06/10/2023]
Abstract
Arsenic is a toxin, ranking first on the Agency for Toxic Substances and Disease Registry and the Environmental Protection Agency Priority List of Hazardous Substances. Chronic exposure increases the risk of a broad range of human illnesses, most notably cancer; however, there is significant variability in arsenic-induced disease among exposed individuals. Human genetics is a known component, but it alone cannot account for the large inter-individual variability in the presentation of arsenicosis symptoms. Each part of the gastrointestinal tract (GIT) may be considered as a unique environment with characteristic pH, oxygen concentration, and microbiome. Given the well-established arsenic redox transformation activities of microorganisms, it is reasonable to imagine how the GIT microbiome composition variability among individuals could play a significant role in determining the fate, mobility and toxicity of arsenic, whether inhaled or ingested. This is a relatively new field of research that would benefit from early dialogue aimed at summarizing what is known and identifying reasonable research targets and concepts. Herein, we strive to initiate this dialogue by reviewing known aspects of microbe-arsenic interactions and placing it in the context of potential for influencing host exposure and health risks. We finish by considering future experimental approaches that might be of value.
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Affiliation(s)
- Timothy R McDermott
- Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT, 59717, USA
| | - John F Stolz
- Department of Biological Sciences and Center for Environmental Research and Education, Duquesne University, Pittsburgh, PA, USA
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15
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Thouin H, Battaglia-Brunet F, Norini MP, Joulian C, Hellal J, Le Forestier L, Dupraz S, Gautret P. Microbial community response to environmental changes in a technosol historically contaminated by the burning of chemical ammunitions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 697:134108. [PMID: 32380607 DOI: 10.1016/j.scitotenv.2019.134108] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 07/30/2019] [Accepted: 08/24/2019] [Indexed: 06/11/2023]
Abstract
The burning of chemical weapons in the 1926-1928 period produced polluted technosols with elevated levels of arsenic, zinc, lead and copper. During an eight-month mesocosm experiment, these soils were submitted to two controlled environmental changes, namely the alternation of dry and water-saturated conditions and the addition of fragmented organic forest litter to the surface soil. We investigated, by sequencing the gene coding 16S rRNA and 18S rRNA, (1) the structure of the prokaryotic and eukaryotic community in this polluted technosol and (2) their response to the simulated environmental changes, in the four distinct layers of the mesocosm. In spite of the high concentrations of toxic elements, microbial diversity was found to be similar to that of non-polluted soils. The bacterial community was dominated by Proteobacteria, Acidobacteria and Bacteroidetes, while the fungal community was dominated by Ascomicota. Amongst the most abundant bacterial Operational Taxonomic Units (OTUs), including Sphingomonas as a major genus, some were common to soil environments in general whereas a few, such as organisms related to Leptospirillum and Acidiferrobacter, seemed to be more specific to the geochemical context. Evolution of the microbial abundance and community structures shed light on modifications induced by water saturation and the addition of forest litter to the soil surface. Co-inertia analysis suggests a relationship between the physico-chemical parameters total organic carbon, Zn, NH4+ and As(III) concentrations and the bacterial community structure. Both these results imply that microbial community dynamics linked to environmental changes should be considered as factors influencing the behavior of toxic elements on former ammunition burning sites.
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Affiliation(s)
- Hugues Thouin
- BRGM, 3 avenue Claude Guillemin, 45060 Orléans, France; Université d'Orléans, CNRS, BRGM, ISTO, UMR 7327, F-45071 Orléans, France.
| | - Fabienne Battaglia-Brunet
- BRGM, 3 avenue Claude Guillemin, 45060 Orléans, France; Université d'Orléans, CNRS, BRGM, ISTO, UMR 7327, F-45071 Orléans, France
| | - Marie-Paule Norini
- Université d'Orléans, CNRS, BRGM, ISTO, UMR 7327, F-45071 Orléans, France
| | | | | | - Lydie Le Forestier
- Université d'Orléans, CNRS, BRGM, ISTO, UMR 7327, F-45071 Orléans, France
| | | | - Pascale Gautret
- Université d'Orléans, CNRS, BRGM, ISTO, UMR 7327, F-45071 Orléans, France
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16
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Sun X, Li B, Han F, Xiao E, Xiao T, Sun W. Impacts of Arsenic and Antimony Co-Contamination on Sedimentary Microbial Communities in Rivers with Different Pollution Gradients. MICROBIAL ECOLOGY 2019; 78:589-602. [PMID: 30725170 DOI: 10.1007/s00248-019-01327-5] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Accepted: 01/14/2019] [Indexed: 06/09/2023]
Abstract
Arsenic (As) and antimony (Sb) are both toxic metalloids that are of primary concern for human health. Mining activity has introduced elevated levels of arsenic and antimony into the rivers and has increased the risks of drinking water contamination in China. Due to their mobility, the majority of the metalloids originating from mining activities are deposited in the river sediments. Thus, depending on various geochemical conditions, sediment could either be a sink or source for As and Sb in the water column. Microbes are key mediators for biogeochemical transformation and can both mobilize or precipitate As and Sb. To further understand the microbial community responses to As and Sb contamination, sediment samples with different contamination levels were collected from three rivers. The result of the study suggested that the major portions of As and Sb were in strong association with the sediment matrix and considered nonbioavailable. These fractions, however, were also suggested to have profound influences on the microbial community composition. As and Sb contamination caused strong reductions in microbial diversity in the heavily contaminated river sediments. Microorganisms were more sensitive to As comparing to Sb, as revealed by the co-occurrence network and random forest predictions. Operational taxonomic units (OTUs) that were potentially involved in As and Sb metabolism, such as Anaerolinea, Sphingomonas, and Opitutus, were enriched in the heavily contaminated samples. In contrast, many keystone taxa, including members of the Hyphomicrobiaceae and Bradyrhizobiaceae families, were inhibited by metalloid contamination, which could further impair crucial environmental services provided by these members.
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Affiliation(s)
- Xiaoxu Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Baoqin Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Feng Han
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China
| | - Enzong Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, 510006, China
| | - Tangfu Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou, 510006, China
| | - Weimin Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou, 510650, China.
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Sun X, Li B, Han F, Xiao E, Wang Q, Xiao T, Sun W. Vegetation type impacts microbial interaction with antimony contaminants in a mining-contaminated soil environment. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2019; 252:1872-1881. [PMID: 31374407 DOI: 10.1016/j.envpol.2019.06.070] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 06/03/2019] [Accepted: 06/18/2019] [Indexed: 06/10/2023]
Abstract
Antimony (Sb) contamination is a growing environmental concern due to the increasing use of this metalloid in mining and industrial activities. The remediation of Sb-contaminated soil is a lengthy and costly process. Phytoremediation has been suggested as a cost-effective method for the long-term management of Sb-contaminated sites. Various plant types have been found to thrive in contaminated sites and have the potential to remediate Sb contamination; however, their impacts on Sb speciation and the indigenous microbial community remain unclear. In the current study, soils from three types of vegetation environment (i.e., grass, forest, and agricultural) were collected from two Sb mining areas in Guizhou, China. Comparisons of geochemical and microbiological properties among the three vegetation types revealed that vegetation was a major driver of soil biogeochemical characteristics. Contaminant fractions (i.e., extractable fractions of Sb and As) had a greater influence on microbial communities in grass and forest soil, whereas pH had a greater impact in agricultural soil. This difference may indicate distinct microbe-environment interactions in agricultural soil affected by anthropogenic activity. The dominant taxa, including Flavobacterium, Geobacter, Janthinobacterium, Clostridium, and Mycobacterium responded positively to various contaminant fractions, indicating that the community had adapted to the chronically contaminated environment. However, the regulation of these dominant genera by geochemical properties appears to be taxon-specific. Our results demonstrate that vegetation type has a substantial impact on Sb and As biogeochemical cycles, and should be considered in future remediation efforts.
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Affiliation(s)
- Xiaoxu Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Baoqin Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Feng Han
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Enzong Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Qi Wang
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China
| | - Tangfu Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering, Guangzhou University, Guangzhou 510006, China
| | - Weimin Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangzhou 510650, China.
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18
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Liu JL, Yao J, Lu C, Li H, Li ZF, Duran R, Sunahara G, Mihucz VG. Microbial activity and biodiversity responding to contamination of metal(loid) in heterogeneous nonferrous mining and smelting areas. CHEMOSPHERE 2019; 226:659-667. [PMID: 30959450 DOI: 10.1016/j.chemosphere.2019.03.051] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Revised: 02/28/2019] [Accepted: 03/10/2019] [Indexed: 06/09/2023]
Abstract
The combined contamination of nonferrous metal(loid) mining and smelting areas is a global issue, in need of urgent management. To our knowledge, this is the first report of microbial activities by microcalorimetry in specific nonferrous metal(loid) tailings with oligonutrition and high contents of toxic metal(loid)s. Dynamics of bacterial diversity were also characterized. Here we show that tailings had low microbial activities (Pmax = 64.1-331 μW g-1), which were accelerated by the presence of dipotassium phosphate (Pmax = 346-856 μW g-1), as measured by microcalorimetry. Frequent detection of S- and metal-resistant related genera and differences of Thiobacillus and Acidithiobacillus abundances indicated that the tailings were in an early stage of acidification. It has been further confirmed by the presence of a weak acid environment and secondary sulfur associated minerals, such as Sb2S3, FeAsS, FeS2, and CuFeS2. During the acidification process, phosphate, metal(loid)s, and microbial activity were correlated to the bacterial communities. It is suggested that the bacterial communities have metabolic capacities with a high potential for the use in management processes of multi-contaminated nonferrous metalliferous tailings.
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Affiliation(s)
- Jian-Li Liu
- School of Energy and Environment Engineering, University of Science and Technology Beijing, Beijing, 100083, China
| | - Jun Yao
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 100083, China.
| | - Chao Lu
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 100083, China
| | - Hao Li
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 100083, China
| | - Zi-Fu Li
- School of Energy and Environment Engineering, University of Science and Technology Beijing, Beijing, 100083, China.
| | - Robert Duran
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 100083, China; Equipe Environnement et Microbiologie, MELODY Group, Université de Pau et des Pays de l'Adour, E2S-UPPA, IPREM UMR CNRS 5254, BP 1155, 64013, Pau Cedex, France
| | - Geoffrey Sunahara
- School of Water Resource and Environment Engineering, Research Center of Environmental Sciences and Engineering, China University of Geosciences (Beijing), 100083, China; Department of Natural Resource Sciences, McGill University, 21111, Lakeshore Drive, Ste-Anne-de-Bellevue, Quebec, H9X 3V9, Canada
| | - Victor G Mihucz
- Sino-Hungarian Joint Research Laboratory for Environmental Sciences and Health, ELTE -Eötvös Loránd University, H-1117, Budapest, Pázmány Péter stny. 1/A, Hungary
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Santini TC, Raudsepp M, Hamilton J, Nunn J. Extreme Geochemical Conditions and Dispersal Limitation Retard Primary Succession of Microbial Communities in Gold Tailings. Front Microbiol 2018; 9:2785. [PMID: 30546349 PMCID: PMC6279923 DOI: 10.3389/fmicb.2018.02785] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2018] [Accepted: 10/30/2018] [Indexed: 11/13/2022] Open
Abstract
Microbial community succession in tailings materials is poorly understood at present, and likely to be substantially different from similar processes in natural primary successional environments due to the unusual geochemical properties of tailings and the isolated design of tailings storage facilities. This is the first study to evaluate processes of primary succession in microbial communities colonizing unamended tailings, and compare the relative importance of stochastic (predominantly dust-borne dispersal) and deterministic (strong selection pressures from extreme geochemical properties) processes in governing community assembly rates and trajectories to those observed in natural environments. Dispersal-based recruitment required > 6 months to shift microbial community composition in unamended, field-weathered gold tailings; and in the absence of targeted inoculants, recruitment was dominated by salt- and alkali-tolerant species. In addition, cell numbers were less than 106 cells/g tailings until > 6 months after deposition. Laboratory experiments simulating microbial cell addition via dust revealed that high (>6 months' equivalent) dust addition rates were required to effect stabilization of microbial cell counts in tailings. In field-weathered tailings, topsoil addition during rehabilitation works exerted a double effect, acting as a microbial inoculant and correcting geochemical properties of tailings. However, microbial communities in rehabilitated tailings remained compositionally distinct from those of reference soils in surrounding environments. pH, water extractable Mg, and water extractable Fe emerged as major controls on microbial community composition in the field-weathered gold tailings. Overall, this study highlights the need for application of targeted microbial inoculants to accelerate rates of microbial community succession in tailings, which are limited primarily by slow dispersal due to physical and spatial isolation of tailings facilities from inoculant sources; and for geochemical properties of tailings to be amended to moderate values to encourage microbial community diversification and succession.
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Affiliation(s)
- Talitha C Santini
- School of Agriculture and Environment, The University of Western Australia, Crawley, WA, Australia.,School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - Maija Raudsepp
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB, Canada
| | - Jessica Hamilton
- School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
| | - Jasmine Nunn
- School of Earth and Environmental Sciences, The University of Queensland, St Lucia, QLD, Australia
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20
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Sun W, Xiao E, Häggblom M, Krumins V, Dong Y, Sun X, Li F, Wang Q, Li B, Yan B. Bacterial Survival Strategies in an Alkaline Tailing Site and the Physiological Mechanisms of Dominant Phylotypes As Revealed by Metagenomic Analyses. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2018; 52:13370-13380. [PMID: 30346157 DOI: 10.1021/acs.est.8b03853] [Citation(s) in RCA: 92] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Microorganisms inhabiting mine tailings require specific metabolic strategies to survive, which may hold potential for pollution clean up. Effective in situ bioremediation will rely on an in-depth understanding of the function of the bacterial communities, especially the abundant and metabolically active phylotypes. In this study, the bacterial communities collected from an alkaline tailing site were profiled by 16S rRNA gene amplicon sequencing as well as shotgun metagenomic analysis. Our results indicated that potentials for carbon and nitrogen fixation as well as metal resistance and transformation were widespread among the bacterial community members, especially in highly enriched phylotypes, such as members of Thiobacillus and Meiothermus. Important functional microbial guilds including carbon and nitrogen fixers may contribute to phytoremediation by providing nutrients for hyperaccumulator plants. In addition, metal-metabolizing bacteria may influence metal speciation and solubility. This discovery provides an understanding for microbial survival strategies in the tailings and lays the foundation for future potential manipulation of the tailing microbiome for in situ bioremediation.
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Affiliation(s)
- Weimin Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management , Guangdong Institute of Eco-environmental Science & Technology , Guangzhou 510650 , China
| | - Enzong Xiao
- Key Laboratory of Water Quality and Conservation in the Pearl River Delta, Ministry of Education, School of Environmental Science and Engineering , Guangzhou University , Guangzhou 510006 , China
| | - Max Häggblom
- Department of Biochemistry and Microbiology , Rutgers University , New Brunswick , New Jersey 08901 , United States
| | - Valdis Krumins
- Department of Environmental Sciences , Rutgers University , New Brunswick , New Jersey 08901 , United States
| | - Yiran Dong
- Institute for Genomic Biology , University of Illinois, Urbana-Champaign , Urbana , Illinois 61801 , United States
| | - Xiaoxu Sun
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management , Guangdong Institute of Eco-environmental Science & Technology , Guangzhou 510650 , China
| | - Fangbai Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management , Guangdong Institute of Eco-environmental Science & Technology , Guangzhou 510650 , China
| | - Qi Wang
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management , Guangdong Institute of Eco-environmental Science & Technology , Guangzhou 510650 , China
| | - Baoqin Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management , Guangdong Institute of Eco-environmental Science & Technology , Guangzhou 510650 , China
| | - Bei Yan
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management , Guangdong Institute of Eco-environmental Science & Technology , Guangzhou 510650 , China
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21
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Fan L, Zhao F, Liu J, Hudson-Edwards KA. Dissolution of realgar by Acidithiobacillus ferrooxidans in the presence and absence of zerovalent iron: Implications for remediation of iron-deficient realgar tailings. CHEMOSPHERE 2018; 209:381-391. [PMID: 29935467 DOI: 10.1016/j.chemosphere.2018.05.192] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2018] [Revised: 05/25/2018] [Accepted: 05/31/2018] [Indexed: 05/27/2023]
Abstract
Realgar (As4S4)-rich tailings are iron-deficient arsenical mine wastes. The mechanisms and products of the dissolution of realgar by Acidithiobacillus ferrooxidans (A. ferrooxidans) in the presence (0.2 g and 2 g) and absence of zerovalent iron (ZVI) are investigated for three stages (each of 7 d with fresh A. ferrooxidans medium addition between the stages). SEM-EDX, FTIR, XPS and selective extraction analysis are used to characterize the solid-phase during the experiments. ZVI addition causes the systems to become more acid-generating, although pH increases are observed in the first day due to ZVI dissolution. Arsenic is released to solution due to realgar oxidation (∼30 mg L-1 in the 0 g ZVI system in Stage I), but low concentrations are observed in the ZVI-added systems (<5 mg L-1) and in Stages II and III of the 0 g ZVI system. As(III) dominates the released As(T) at day 1 (83-89% of As(T)), but is largely oxidized to As(V) at day 7 of each stage (53-98% of As(T)). Arsenic attenuation is attributed to the formation of mixed As-Fe oxyhydroxides and oxyhydroxy sulfates that take up released arsenic and are abundant in the 2.0 g ZVI system, and to passivation of the realgar surface. Consequently, a new strategy that combines A. ferrooxidans and exogenous ZVI addition for treating in-situ iron-deficient realgar-rich tailings is proposed, although its long-term effects need to be monitored.
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Affiliation(s)
- Lijun Fan
- College of Geoscience and Surveying Engineering, China University of Mining & Technology, Beijing, 100083, China
| | - Fenghua Zhao
- College of Geoscience and Surveying Engineering, China University of Mining & Technology, Beijing, 100083, China
| | - Jing Liu
- Key Laboratory of Eco-environments in Three Gorges Reservoir Region, Ministry of Education, Chongqing Key Laboratory of Agricultural Resources and Environment, College of Resources and Environment, Department of Environment Science and Engineering, Southwest University, Chongqing 400716, China.
| | - Karen A Hudson-Edwards
- Environment & Sustainability Institute and Camborne School of Mines, University of Exeter, Penryn, Cornwall, TR10 9DF, UK.
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22
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Ma S, Song CS, Chen Y, Wang F, Chen HL. Hematite enhances the removal of Cr(VI) by Bacillus subtilis BSn5 from aquatic environment. CHEMOSPHERE 2018; 208:579-585. [PMID: 29890496 DOI: 10.1016/j.chemosphere.2018.06.037] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2017] [Revised: 05/08/2018] [Accepted: 06/05/2018] [Indexed: 06/08/2023]
Abstract
In the present study, we investigated the removal of Cr(VI) and the associated bacterial activity in the systems containing Bacillus subtilis BSn5 (B. subtilis BSn5) and hematite. The microcalorimetry was used to study the effect of hematite on the normal physiological functions of B. subtilis BSn5 towards the removal of Cr(VI) for the first time. The results of the heat flux and the sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) showed that hematite does not affect the normal physiological functions of B. subtilis BSn5, and can help the strains maintain their activity in the presence of Cr(VI). More importantly, the relative capacity and intensity of Cr(VI) and total Cr removal by B. subtilis BSn5 in the presence of hematite were higher than that in the absence of hematite. The enhancement effect could be associated with their mineral adsorption, biosorption, Fe(II) reduction, bioreduction and immobilization functions. This study demonstrates the possibility of reducing the toxicity of Cr(VI) and enhancing the Cr(VI) removal efficiency in contaminated environments using a combination of hematite and B. subtilis BSn5.
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Affiliation(s)
- Shuai Ma
- School of Energy & Environmental Engineering, And Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science and Technology Beijing, 30 Xueyuan Road, 100083 Beijing, China
| | - Chang-Shun Song
- School of Energy & Environmental Engineering, And Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science and Technology Beijing, 30 Xueyuan Road, 100083 Beijing, China
| | - Yuefang Chen
- School of Energy & Environmental Engineering, And Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science and Technology Beijing, 30 Xueyuan Road, 100083 Beijing, China.
| | - Fei Wang
- School of Energy & Environmental Engineering, And Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science and Technology Beijing, 30 Xueyuan Road, 100083 Beijing, China
| | - Hui-Lun Chen
- School of Energy & Environmental Engineering, And Beijing Key Laboratory of Resource-oriented Treatment of Industrial Pollutants, University of Science and Technology Beijing, 30 Xueyuan Road, 100083 Beijing, China
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23
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China's most typical nonferrous organic-metal facilities own specific microbial communities. Sci Rep 2018; 8:12570. [PMID: 30135589 PMCID: PMC6105654 DOI: 10.1038/s41598-018-30519-1] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2018] [Accepted: 07/11/2018] [Indexed: 11/20/2022] Open
Abstract
The diversity and function of microorganisms have yet to be explored at non-ferrous metal mining facilities (NMMFs), which are the world’s largest and potentially most toxic sources of co-existing metal(loid)s and flotation reagents (FRs). The diversity and inferred functions of different bacterial communities inhabiting two types of sites (active and abandoned) in Guangxi province (China) were investigated for the first time. Here we show that the structure and diversity of bacteria correlated with the types of mine sites, metal(loid)s, and FRs concentrations; and best correlated with the combination of pH, Cu, Pb, and Mn. Combined microbial coenobium may play a pivotal role in NMMFs microbial life. Arenimonas, specific in active mine sites and an acidophilic bacterium, carries functions able to cope with the extreme conditions, whereas Latescibacteria specific in abandoned sites can degrade organics. Such a bacterial consortium provides new insights to develop cost-effective remediation strategies of co-contaminated sites that currently remain intractable for bioremediation.
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24
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Kataoka T, Mitsunobu S, Hamamura N. Influence of the Chemical Form of Antimony on Soil Microbial Community Structure and Arsenite Oxidation Activity. Microbes Environ 2018; 33:214-221. [PMID: 29887548 PMCID: PMC6031390 DOI: 10.1264/jsme2.me17182] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Abstract
In the present study, the influence of the co-contamination with various chemical forms of antimony (Sb) with arsenite (As[III]) on soil microbial communities was investigated. The oxidation of As(III) to As(V) was monitored in soil columns amended with As(III) and three different chemical forms of Sb: antimony potassium tartrate (Sb[III]-tar), antimony(III) oxide (Sb2O3), and potassium antimonate (Sb[V]). Soil microbial communities were examined qualitatively and quantitatively using 16S rDNA- and arsenite oxidase gene (aioA)-targeted analyses. Microbial As(III) oxidation was detected in all soil columns and 90–100% of added As(III) (200 μmol L−1) was oxidized to As(V) in 9 d, except in the Sb(III)-tar co-amendments that only oxidized 30%. 16S rDNA- and aioA-targeted analyses showed that the presence of different Sb chemical forms significantly affected the selection of distinct As(III)-oxidizing bacterial populations. Most of the 16S rRNA genes detected in soil columns belonged to Betaproteobacteria and Gammaproteobacteria, and some sequences were closely related to those of known As(III) oxidizers. Co-amendments with Sb(III)-tar and high concentrations of Sb2O3 significantly increased the ratios of aioA-possessing bacterial populations, indicating the enrichment of As(III) oxidizers resistant to As and Sb toxicity. Under Sb co-amendment conditions, there was no correlation between aioA gene abundance and the rates of As(III) oxidation. Collectively, these results demonstrated that the presence of different Sb chemical forms imposed a strong selective pressure on the soil bacterial community and, thus, the co-existing metalloid is an important factor affecting the redox transformation of arsenic in natural environments.
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Affiliation(s)
- Takafumi Kataoka
- Faculty of Marine Science and Technology, Fukui Prefectural University.,Center for Marine Environmental Studies (CMES), Ehime University
| | - Satoshi Mitsunobu
- Department of Bioresources, Faculty of Agriculture, Ehime University
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25
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Leon CG, Moraga R, Valenzuela C, Gugliandolo C, Lo Giudice A, Papale M, Vilo C, Dong Q, Smith CT, Rossello-Mora R, Yañez J, Campos VL. Effect of the natural arsenic gradient on the diversity and arsenic resistance of bacterial communities of the sediments of Camarones River (Atacama Desert, Chile). PLoS One 2018; 13:e0195080. [PMID: 29715297 PMCID: PMC5929503 DOI: 10.1371/journal.pone.0195080] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Accepted: 03/17/2018] [Indexed: 12/20/2022] Open
Abstract
Arsenic (As), a highly toxic metalloid, naturally present in Camarones River (Atacama Desert, Chile) is a great health concern for the local population and authorities. In this study, the taxonomic and functional characterization of bacterial communities associated to metal-rich sediments from three sites of the river (sites M1, M2 and M3), showing different arsenic concentrations, were evaluated using a combination of approaches. Diversity of bacterial communities was evaluated by Illumina sequencing. Strains resistant to arsenic concentrations varying from 0.5 to 100 mM arsenite or arsenate were isolated and the presence of genes coding for enzymes involved in arsenic oxidation (aio) or reduction (arsC) investigated. Bacterial communities showed a moderate diversity which increased as arsenic concentrations decreased along the river. Sequences of the dominant taxonomic groups (abundances ≥1%) present in all three sites were affiliated to Proteobacteria (range 40.3–47.2%), Firmicutes (8.4–24.8%), Acidobacteria (10.4–17.1%), Actinobacteria (5.4–8.1%), Chloroflexi (3.9–7.5%), Planctomycetes (1.2–5.3%), Gemmatimonadetes (1.2–1.5%), and Nitrospirae (1.1–1.2%). Bacterial communities from sites M2 and M3 showed no significant differences in diversity between each other (p = 0.9753) but they were significantly more diverse than M1 (p<0.001 and p<0.001, respectively). Sequences affiliated with Proteobacteria, Firmicutes, Acidobacteria, Chloroflexi and Actinobacteria at M1 accounted for more than 89% of the total classified bacterial sequences present but these phyla were present in lesser proportions in M2 and M3 sites. Strains isolated from the sediment of sample M1, having the greatest arsenic concentration (498 mg kg-1), showed the largest percentages of arsenic oxidation and reduction. Genes aio were more frequently detected in isolates from M1 (54%), whereas arsC genes were present in almost all isolates from all three sediments, suggesting that bacterial communities play an important role in the arsenic biogeochemical cycle and detoxification of arsenical compounds. Overall, results provide further knowledge on the microbial diversity of arsenic contaminated fresh-water sediments.
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Affiliation(s)
- Carla G. Leon
- Environmental Microbiology Laboratory, Department of Microbiology, Faculty of Biological Sciences, University of Concepción, Concepción, Chile
| | - Ruben Moraga
- Microbiology Laboratory, Faculty of Renewable Natural Resources, Arturo Prat University, Iquique, Chile
| | - Cristian Valenzuela
- Environmental Microbiology Laboratory, Department of Microbiology, Faculty of Biological Sciences, University of Concepción, Concepción, Chile
| | - Concetta Gugliandolo
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
| | - Angelina Lo Giudice
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
- Institute for the Coastal Marine Environment, National Research Council (IAMC-CNR), Messina, Italy
| | - Maria Papale
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Messina, Italy
| | - Claudia Vilo
- Environmental Microbiology Laboratory, Department of Microbiology, Faculty of Biological Sciences, University of Concepción, Concepción, Chile
| | - Qunfeng Dong
- Center for Biomedical Informatics, Department of Public Health Sciences, Loyola University Chicago, Maywood, Illinois, United States of America
| | - Carlos T. Smith
- Environmental Microbiology Laboratory, Department of Microbiology, Faculty of Biological Sciences, University of Concepción, Concepción, Chile
| | - Ramon Rossello-Mora
- Marine Microbiology Group, Institut Mediterrani d’Estudis Avancats (CSIC-UIB), Esporles, Spain
| | - Jorge Yañez
- Department of Analytical and Inorganic Chemistry, Faculty of Chemical Sciences, University of Concepcion, Concepcion, Chile
| | - Victor L. Campos
- Environmental Microbiology Laboratory, Department of Microbiology, Faculty of Biological Sciences, University of Concepción, Concepción, Chile
- * E-mail:
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26
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Wang L, Ji B, Hu Y, Liu R, Sun W. A review on in situ phytoremediation of mine tailings. CHEMOSPHERE 2017; 184:594-600. [PMID: 28623832 DOI: 10.1016/j.chemosphere.2017.06.025] [Citation(s) in RCA: 214] [Impact Index Per Article: 30.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2017] [Revised: 06/05/2017] [Accepted: 06/07/2017] [Indexed: 05/22/2023]
Abstract
Mine tailings are detrimental to natural plant growth due to their physicochemical characteristics, such as high pH, high salinity, low water retention capacity, high heavy metal concentrations, and deficiencies in soil organic matter and fertility. Thus, the remediation of mine tailings has become a key issue in environmental science and engineering. Phytoremediation, an in situ cost-effective technology, is emerging as the most promising remediation method for mine tailings by introducing tolerant plant species. It is particularly effective in dealing with large-area mine tailings with shallow contamination of organic, nutrient and metal pollutants. In this review, the background, concepts and applications of phytoremediation are comprehensively discussed. Furthermore, proper amendments used to improve the physical, chemical and biological properties of mine tailings are systematically reviewed and compared. Emphasis is placed on the types and characteristics of tolerant plants and their role in phytoremediation. Moreover, the role of microorganisms and their mechanism in phytoremediation are also discussed in-depth.
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Affiliation(s)
- Li Wang
- School of Mineral Processing and Bioengineering, Central South University, Changsha, 410083, PR China
| | - Bin Ji
- School of Mineral Processing and Bioengineering, Central South University, Changsha, 410083, PR China
| | - Yuehua Hu
- School of Mineral Processing and Bioengineering, Central South University, Changsha, 410083, PR China
| | - Runqing Liu
- School of Mineral Processing and Bioengineering, Central South University, Changsha, 410083, PR China
| | - Wei Sun
- School of Mineral Processing and Bioengineering, Central South University, Changsha, 410083, PR China.
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27
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Rational Utilization of Fine Unclassified Tailings and Activated Blast Furnace Slag with High Calcium. MINERALS 2017. [DOI: 10.3390/min7040048] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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28
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A Model Study of the Photochemical Fate of As(III) in Paddy-Water. Molecules 2017; 22:molecules22030445. [PMID: 28287457 PMCID: PMC6155196 DOI: 10.3390/molecules22030445] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2017] [Revised: 03/03/2017] [Accepted: 03/06/2017] [Indexed: 12/04/2022] Open
Abstract
The APEX (Aqueous Photochemistry of Environmentally-occurring Xenobiotics) software previously developed by one of us was used to model the photochemistry of As(III) in paddy-field water, allowing a comparison with biotic processes. The model included key paddy-water variables, such as the shielding effect of the rice canopy on incident sunlight and its monthly variations, water pH, and the photochemical parameters of the chromophoric dissolved organic matter (CDOM) occurring in paddy fields. The half-life times (t1/2) of As(III) photooxidation to As(V) would be ~20–30 days in May. In contrast, the photochemical oxidation of As(III) would be much slower in June and July due to rice-canopy shading of radiation because of plant growth, despite higher sunlight irradiance. At pH < 8 the photooxidation of As(III) would mainly be accounted for by reaction with transient species produced by irradiated CDOM (here represented by the excited triplet states 3CDOM*, neglecting the possibly more important reactions with poorly known species such as the phenoxy radicals) and, to a lesser extent, with the hydroxyl radicals (HO•). However, the carbonate radicals (CO3•−) could be key photooxidants at pH > 8.5 provided that the paddy-water 3CDOM* is sufficiently reactive toward the oxidation of CO32−. In particular, if paddy-water 3CDOM* oxidizes the carbonate anion with a second-order reaction rate constant near (or higher than) 106 M−1·s−1, the photooxidation of As(III) could be quite fast at pH > 8.5. Such pH conditions can be produced by elevated photosynthetic activity that consumes dissolved CO2.
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29
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Enhanced Detoxification of Arsenic Under Carbon Starvation: A New Insight into Microbial Arsenic Physiology. Curr Microbiol 2017; 74:614-622. [DOI: 10.1007/s00284-017-1203-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2016] [Accepted: 01/20/2017] [Indexed: 11/26/2022]
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30
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Tripti K. pH modulates arsenic toxicity in Bacillus licheniformis DAS-2. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2016; 130:240-247. [PMID: 27135959 DOI: 10.1016/j.ecoenv.2016.04.029] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Revised: 04/21/2016] [Accepted: 04/23/2016] [Indexed: 06/05/2023]
Abstract
The toxic characteristics of arsenic species, As(V) and As(III) result in ecological risks. Arsenic tolerant bacterium was isolated and identified as the Bacillus licheniformis DAS-2 through 16SrDNA sequencing. B. licheniformis DAS-2 was efficient to tolerate and remove both the As(V)[MIC 8mM] and As(III)[MIC 6mM] from the growth medium. The potential for the removal/uptake of arsenic from the 3, 5 and 7mM As(V) enriched growth media was 100%, 60% and 35% respectively and from the 1, 3 and 5mM As(III) enrichment it was 100%, 99% and 58% respectively at neutral pH. 80% of uptake As(V) was reduced to As(III) in 3mM As(V) enrichment which was gradually decreased to only 17% at 7mM As(V) enrichment at neutral pH. The arsenic toxicity in B. licheniformis DAS-2 was found modulated by pH and was examined through alteration in growth, uptake/removal, reduction and measurement of chemical toxicity.
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Affiliation(s)
- K Tripti
- Laboratory of Environment and Biotechnology, Department of Botany, Patna Science College, Patna University, Patna 800005, India
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31
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Liu G, Cai Y, Hernandez D, Schrlau J, Allen M. Mobility and speciation of arsenic in the coal fly ashes collected from the Savannah River Site (SRS). CHEMOSPHERE 2016; 151:138-144. [PMID: 26933905 DOI: 10.1016/j.chemosphere.2016.02.071] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2015] [Revised: 02/03/2016] [Accepted: 02/16/2016] [Indexed: 06/05/2023]
Abstract
Arsenic (As) leaching from coal fly ash stockpiled at waste disposal sites is a source of environmental concern. An array of techniques including batch extraction and column leaching tests, in combination with speciation analysis of chemically specific As species, was employed to evaluate the mobility of As in fly ashes collected from the U.S. DOE Savannah River Site. The results obtained using the U.S. EPA Toxicity Characteristic Leaching Procedure (TCLP), a two-step sequential extraction technique, and continuous column leaching experiments suggest that only a small portion of total As in the fly ashes was mobile, but mobilizable As could be a considerable fraction (3.1-43%), varying inversely with alkalinity of fly ash. Speciation analysis by using phosphate extraction suggests that arsenate (As(V)) was the major extractable species in the fly ash samples. During the column leaching experiment, however, it was observed that arsenite (As(III)) was an important species leached out of the fly ashes, indicating species conversion during the leaching process. The matrix-bound As(V) within the fly ash, once being released from the solid matrix, could be converted to As(III) during its transport inside the column. The pHs of leachates and fly ashes (both acidic in column leaching experiments here) could be related to the dominance of As(III) in the effluents.
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Affiliation(s)
- Guangliang Liu
- Institute of Environment and Health, Jianghan University, Wuhan, 430056, China; Department of Chemistry & Biochemistry, Southeast Environmental Research Center, Florida International University, Miami, FL, 33199, USA.
| | - Yong Cai
- Institute of Environment and Health, Jianghan University, Wuhan, 430056, China; Department of Chemistry & Biochemistry, Southeast Environmental Research Center, Florida International University, Miami, FL, 33199, USA
| | - Damaris Hernandez
- Department of Chemistry & Biochemistry, Southeast Environmental Research Center, Florida International University, Miami, FL, 33199, USA
| | - Jill Schrlau
- Department of Chemistry & Biochemistry, Southeast Environmental Research Center, Florida International University, Miami, FL, 33199, USA
| | - Marshall Allen
- Applied Research Center (ARC), Florida International University, Miami, FL, 33174, USA
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He Z, Yan H, Chen Y, Shen H, Xu W, Zhang H, Shi L, Zhu YG, Ma M. An aquaporin PvTIP4;1 from Pteris vittata may mediate arsenite uptake. THE NEW PHYTOLOGIST 2016; 209:746-61. [PMID: 26372374 DOI: 10.1111/nph.13637] [Citation(s) in RCA: 60] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Accepted: 08/05/2015] [Indexed: 05/07/2023]
Abstract
The fern Pteris vittata is an arsenic hyperaccumulator. The genes involved in arsenite (As(III)) transport are not yet clear. Here, we describe the isolation and characterization of a new P. vittata aquaporin gene, PvTIP4;1, which may mediate As(III) uptake. PvTIP4;1 was identified from yeast functional complement cDNA library of P. vittata. Arsenic toxicity and accumulating activities of PvTIP4;1 were analyzed in Saccharomyces cerevisiae and Arabidopsis. Subcellular localization of PvTIP4;1-GFP fusion protein in P. vittata protoplast and callus was conducted. The tissue expression of PvTIP4;1 was investigated by quantitative real-time PCR. Site-directed mutagenesis of the PvTIP4;1 aromatic/arginine (Ar/R) domain was studied. Heterologous expression in yeast demonstrates that PvTIP4;1 was able to facilitate As(III) diffusion. Transgenic Arabidopsis showed that PvTIP4;1 increases arsenic accumulation and induces arsenic sensitivity. Images and FM4-64 staining suggest that PvTIP4;1 localizes to the plasma membrane in P. vittata cells. A tissue location study shows that PvTIP4;1 transcripts are mainly expressed in roots. Site-directed mutation in yeast further proved that the cysteine at the LE1 position of PvTIP4;1 Ar/R domain is a functional site. PvTIP4;1 is a new represented tonoplast intrinsic protein (TIP) aquaporin from P. vittata and the function and location results imply that PvTIP4;1 may be involved in As(III) uptake.
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Affiliation(s)
- Zhenyan He
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Huili Yan
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yanshan Chen
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Hongling Shen
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Wenxiu Xu
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Haiyan Zhang
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Lei Shi
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Yong-Guan Zhu
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, 361021, China
| | - Mi Ma
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
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Pourmohammadbagher A, Shaw JM. Probing Contaminant Transport to and from Clay Surfaces in Organic Solvents and Water Using Solution Calorimetry. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:10841-10849. [PMID: 26296102 DOI: 10.1021/acs.est.5b02416] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Clays, in tailings, are a significant ongoing environmental concern in the mining and oilsands production industries, and clay rehabilitation following contamination poses challenges episodically. Understanding the fundamentals of clay behavior can lead to better environmental impact mitigation strategies. Systematic calorimetric measurements are shown to provide a framework for parsing the synergistic and antagonistic impacts of trace (i.e., parts per million level) components on the surface compositions of clays. The enthalpy of solution of as-received and "contaminated" clays, in as-received and "contaminated" organic solvents and water, at 60 °C and atmospheric pressure, provides important illustrative examples. Clay contamination included pre-saturation of clays with water and organic liquids. Solvent contamination included the addition of trace water to organic solvents and trace organic liquids to water. Enthalpy of solution outcomes are interpreted using a quantitative mass and energy balance modeling framework that isolates terms for solvent and trace contaminant sorption/desorption and surface energy effects. Underlying surface energies are shown to dominate the energetics of the solvent-clay interaction, and organic liquids as solvents or as trace contaminants are shown to displace water from as-received clay surfaces. This approach can be readily extended to include pH, salts, or other effects and is expected to provide mechanistic and quantitative insights underlying the stability of clays in tailings ponds and the behaviors of clays in diverse industrial and natural environments.
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Affiliation(s)
- Amin Pourmohammadbagher
- Department of Chemical and Materials Engineering, University of Alberta , Edmonton, Alberta T6G 2V4, Canada
| | - John M Shaw
- Department of Chemical and Materials Engineering, University of Alberta , Edmonton, Alberta T6G 2V4, Canada
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Ash K, Brown T, Watford T, Scott LE, Stephens C, Ely B. A comparison of the Caulobacter NA1000 and K31 genomes reveals extensive genome rearrangements and differences in metabolic potential. Open Biol 2015; 4:rsob.140128. [PMID: 25274120 PMCID: PMC4221894 DOI: 10.1098/rsob.140128] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022] Open
Abstract
The genus Caulobacter is found in a variety of habitats and is known for its ability to thrive in low-nutrient conditions. K31 is a novel Caulobacter isolate that has the ability to tolerate copper and chlorophenols, and can grow at 4°C with a doubling time of 40 h. K31 contains a 5.5 Mb chromosome that codes for more than 5500 proteins and two large plasmids (234 and 178 kb) that code for 438 additional proteins. A comparison of the K31 and the Caulobacter crescentus NA1000 genomes revealed extensive rearrangements of gene order, suggesting that the genomes had been randomly scrambled. However, a careful analysis revealed that the distance from the origin of replication was conserved for the majority of the genes and that many of the rearrangements involved inversions that included the origin of replication. On a finer scale, numerous small indels were observed. K31 proteins involved in essential functions shared 80–95% amino acid sequence identity with their C. crescentus homologues, while other homologue pairs tended to have lower levels of identity. In addition, the K31 chromosome contains more than 1600 genes with no homologue in NA1000.
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Affiliation(s)
- Kurt Ash
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
| | - Theta Brown
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
| | - Tynetta Watford
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
| | - LaTia E Scott
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
| | - Craig Stephens
- Biology Department, Santa Clara University, Santa Clara, CA 95053, USA
| | - Bert Ely
- Department of Biological Sciences, University of South Carolina, Columbia, SC 29208, USA
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Tian H, Shi Q, Jing C. Arsenic biotransformation in solid waste residue: comparison of contributions from bacteria with arsenate and iron reducing pathways. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2015; 49:2140-2146. [PMID: 25635348 DOI: 10.1021/es504618x] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Arsenic- and iron-reducing bacteria play an important role in regulating As redox transformation and mobility. The motivation of this study was to compare the contributions of different As- and Fe-reducing bacteria to As biotransformation. In this work, three bacteria strains with different functional genes were employed including Pantoea sp. IMH with the arsC gene, Alkaliphilus oremlandii OhILAs possessing the arrA gene, and Shewanella oneidensis MR-1, an iron reducer. The incubation results showed that Pantoea sp. IMH aerobically reduced 100% of As(V) released from waste residues, though total As release was not enhanced. Similarly, strain OhILAs anaerobically reduced dissolved As(V) but could not enhance As release. In contrast, strain MR-1 substantially enhanced As mobilization because of iron reduction, but without changing the As speciation. The formation of the secondary iron mineral pyrite in the MR-1 incubation experiments, as evidenced by the X-ray absorption near-edge spectroscopy (XANES) analysis, contributed little to the uptake of the freed As. Our results suggest that the arsC gene carriers mainly control the As speciation in the aqueous phase in aerobic environments, whereas in anaerobic conditions, the As speciation should be regulated by arrA gene carriers, and As mobility is greatly enhanced by iron reduction.
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Affiliation(s)
- Haixia Tian
- State Key Laboratory of Environmental Chemistry and Ecotoxicology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing 100085, China
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Xie Z, Sun X, Wang Y, Luo Y, Xie X, Su C. Response of growth and superoxide dismutase to enhanced arsenic in two Bacillus species. ECOTOXICOLOGY (LONDON, ENGLAND) 2014; 23:1922-1929. [PMID: 25142350 DOI: 10.1007/s10646-014-1318-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/09/2014] [Indexed: 06/03/2023]
Abstract
Species differences in inorganic arsenic tolerance were investigated by comparing the responses of Bacillus subtilis (B. subtilis) and Bacillus thuringiensis (B. thuringiensis) to elevated concentrations of As(III) and As(V). The cell densities in treatments were always lower during the experiment compared to controls, with the exception of exposure to 1.0 mg As(V) l(-1) on the first day. It was also found that relative growth rate (RGR) of B. thuringiensis was lower than that of B. subtilis. Furthermore, RGR of each Bacillus species was negative correlation with toxicity of inorganic arsenic. However, total cell number still increased in each treatment according to cell density and RGR assays. Superoxide dismutase (SOD) activity of both Bacillus species was promoted by As(III) and As(V), especially under high arsenic concentration condition. In addition, SOD activity of B. thuringiensis was higher than that of B. subtilis during the same exposure time. In lipid peroxidation assay, thiobarbituric acid-reactive substances (TBARS) content of each Bacillus species had a significant increase with increment of arsenic concentration. Moreover, significant difference was observed between the two Bacillus species under high arsenic concentration. TBARS content of B. thuringiensis was higher than that of B. subtilis, indicating that effect of arsenic on cell membranes of B. thuringiensis was much more than that of B. subtilis. These results suggest that the two Bacillus species could adapt and live in high arsenic aquifers, although their growth and cell membranes were affected by As treatment in a way.
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Affiliation(s)
- Zuoming Xie
- School of Environmental Studies, China University of Geosciences, Wuhan, 430074, People's Republic of China
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37
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Nahar MS, Zhang J, Ueda A, Yoshihisa F. Investigation of severe water problem in urban areas of a developing country: the case of Dhaka, Bangladesh. ENVIRONMENTAL GEOCHEMISTRY AND HEALTH 2014; 36:1079-1094. [PMID: 24748410 DOI: 10.1007/s10653-014-9616-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2013] [Accepted: 04/08/2014] [Indexed: 06/03/2023]
Abstract
The present study evaluated water supply geochemistry in Dhaka City, Bangladesh, to provide detailed trace level (subppb) water quality data that include major ions, low dissolved oxygen (DO) and toxic trace metals for sustainable development. Dhaka Groundwater, which almost uniformly meets the World Health Organization guideline, has become the preferred source. Due to groundwater depletion and an ever-increasing need to meet water demands by city residents, Dhaka water supply and sewerage authority has initiated the treatment of river water, despite the fact that very little is known about the geochemical structure, and trace metal content in the Dhaka water supply. Major ion composition of water samples was determined, and the results used to generate Stiff diagrams. The diagrams served to visually compare water from different sources based on units of mass/volume. Hydrochemical facies analysis showed supply ground and surface waters are comprised predominately of Ca-Na-Mg-HCO3 and Ca-Na-Mg-HCO3-Cl types. Spatial distribution of ions, and Na/Cl and Na/SiO2 molar ratio indicated that silicate weathering is the dominant geochemical process. Chemical data revealed that toxic Cr metal mobilization is associated with chemical hazards from the leather industry. The vulnerability of deep wells to contamination by As is governed by the geometry of induced groundwater flow paths and the geochemical conditions encountered between the shallow and deep regions of the aquifer. Quantifying total arsenic (As) and As from interlocking geochemical cycles (Fe, Mn) may assist in interpreting As dynamics in Dhaka well water. The surface source water was hypoxic to anoxic low DO associated with very high concentrations of biological oxygen demands, and electrical conductivity compared to industrial and non-industrial urban processes and standard activity guidelines. The results of this study should be applied to future research focused on the potential to improve water quality in urban and surrounding areas.
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Affiliation(s)
- Mst Shamsun Nahar
- Department of Environmental Biology and Chemistry, Graduate School of Science and Engineering, University of Toyama, 3190 Gofuku, Toyama, 930-8555, Japan,
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38
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Dong G, Huang Y, Yu Q, Wang Y, Wang H, He N, Li Q. Role of nanoparticles in controlling arsenic mobilization from sediments near a realgar tailing. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:7469-7476. [PMID: 24853472 DOI: 10.1021/es4055077] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Microcosm experiments were conducted to investigate the mechanism of microbial-mediated As mobilization from high arsenic tailing sediments amended with nanoparticles (NPs). The addition of SiO2 NPs could substantially stimulate arsenic mobilization in the sodium acetate amendment sediments. However, the addition of Fe2O3 and Fe3O4 NPs restrained arsenic release because these NPs resulted in Fe-As coprecipiate. Moreover, NP additions in sediments amended with sodium acetate as the electron donor clearly promoted microbial dissimilatory iron reduction. Nearly 4 times the Fe(II) (11.67-12.87 mg·L(-1)) from sediments amended with NPs and sodium acetate was released compared to sediments amended with only sodium acetate (3.49 mg·L(-1)). Based on molecular fingerprinting and sequencing analyses, the NP additions could potentially change the sediment bacterial community composition and increase the abundance of Fe(III) and As(V) reduction bacteria. Several potential NP-stimulated bacteria were related to Geobacter, Anaeromyxobacter, Clostridium, and Alicyclobacillus. The findings offer a relatively comprehensive assessment of NP (e.g., Fe2O3, Fe3O4, and SiO2) effects on sediment bacterial communities and As mobilization.
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Affiliation(s)
- Guowen Dong
- Department of Chemical and Biochemical Engineering, College of Chemistry and Chemical Engineering, and The Key Laboratory for Synthetic Biotechnology of Xiamen City, Xiamen University , Xiamen, P. R. China
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Jia Y, Huang H, Chen Z, Zhu YG. Arsenic uptake by rice is influenced by microbe-mediated arsenic redox changes in the rhizosphere. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2014; 48:1001-7. [PMID: 24383760 DOI: 10.1021/es403877s] [Citation(s) in RCA: 118] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Arsenic (As) uptake by rice is largely determined by As speciation, which is strongly influenced by microbial activities. However, little is known about interactions between root and rhizosphere microbes, particularly on arsenic oxidation and reduction. In this study, two rice cultivars with different radial oxygen loss (ROL) ability were used to investigate the impact of microbially mediated As redox changes in the rhizosphere on As uptake. Results showed that the cultivar with higher ROL (Yangdao) had lower As uptake than that with lower ROL (Nongken). The enhancement of the rhizospheric effect on the abundance of the arsenite (As(III)) oxidase gene (aroA-like) was greater than on the arsenate (As(V)) reductase gene (arsC), and As(V) respiratory reductase gene (arrA), resulting in As oxidation and sequestration in the rhizosphere, particularly for cultivar Yangdao. The community of As(III)-oxidizing bacteria in the rhizosphere was dominated by α-Proteobacteria and β-Proteobacteria and was influenced by rhizospheric effects, rice straw application, growth stage, and cultivar. Application of rice straw into the soil increased As release and accumulation into rice plants. These results highlighted that uptake of As by rice is influenced by microbial processes, especially As oxidation in the rhizosphere, and these processes are influenced by root ROL and organic matter application.
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Affiliation(s)
- Yan Jia
- State Key Lab of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences , Beijing 100085, China
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40
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Rahman A, Nahar N, Nawani NN, Jass J, Desale P, Kapadnis BP, Hossain K, Saha AK, Ghosh S, Olsson B, Mandal A. Isolation and characterization of a Lysinibacillus strain B1-CDA showing potential for bioremediation of arsenics from contaminated water. JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH. PART A, TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING 2014; 49:1349-1360. [PMID: 25072766 DOI: 10.1080/10934529.2014.928247] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The main objective of this study was to identify and isolate arsenic resistant bacteria that can be used for removing arsenic from the contaminated environment. Here we report a soil borne bacterium, B1-CDA that can serve this purpose. B1-CDA was isolated from the soil of a cultivated land in Chuadanga district located in the southwest region of Bangladesh. The morphological, biochemical and 16S rRNA analysis suggested that the isolate belongs to Lysinibacillus sphaericus. The minimum inhibitory concentration (MIC) value of the isolate is 500 mM (As) as arsenate. TOF-SIMS and ICP-MS analysis confirmed intracellular accumulation and removal of arsenics. Arsenic accumulation in cells amounted to 5.0 mg g(-1) of the cells dry biomass and thus reduced the arsenic concentration in the contaminated liquid medium by as much as 50%. These results indicate that B1-CDA has the potential for remediation of arsenic from the contaminated water. We believe the benefits of implementing this bacterium to efficiently reduce arsenic exposure will not only help to remove one aspect of human arsenic poisoning but will also benefit livestock and native animal species. Therefore, the outcome of this research will be highly significant for people in the affected area and also for human populations in other countries that have credible health concerns as a consequence of arsenic-contaminated water.
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Affiliation(s)
- Aminur Rahman
- a Systems Biology Research Center, School of Bioscience , University of Skövde , Skövde , Sweden
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Drewniak L, Sklodowska A. Arsenic-transforming microbes and their role in biomining processes. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2013; 20:7728-39. [PMID: 23299972 PMCID: PMC3824281 DOI: 10.1007/s11356-012-1449-0] [Citation(s) in RCA: 60] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2012] [Accepted: 12/19/2012] [Indexed: 05/25/2023]
Abstract
It is well known that microorganisms can dissolve different minerals and use them as sources of nutrients and energy. The majority of rock minerals are rich in vital elements (e.g., P, Fe, S, Mg and Mo), but some may also contain toxic metals or metalloids, like arsenic. The toxicity of arsenic is disclosed after the dissolution of the mineral, which raises two important questions: (1) why do microorganisms dissolve arsenic-bearing minerals and release this metal into the environment in a toxic (also for themselves) form, and (2) How do these microorganisms cope with this toxic element? In this review, we summarize current knowledge about arsenic-transforming microbes and their role in biomining processes. Special consideration is given to studies that have increased our understanding of how microbial activities are linked to the biogeochemistry of arsenic, by examining (1) where and in which forms arsenic occurs in the mining environment, (2) microbial activity in the context of arsenic mineral dissolution and the mechanisms of arsenic resistance, (3) the minerals used and technologies applied in the biomining of arsenic, and (4) how microbes can be used to clean up post-mining environments.
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Affiliation(s)
- L Drewniak
- Laboratory of Environmental Pollution Analysis, Faculty of Biology, University of Warsaw, Miecznikowa 1, 02-096, Warsaw, Poland,
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42
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Summers MM, Katz S, Allen EE, Rouse GW. Association of rhizobia with a marine polychaete. ENVIRONMENTAL MICROBIOLOGY REPORTS 2013; 5:492-8. [PMID: 23864561 DOI: 10.1111/1758-2229.12043] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2012] [Revised: 01/30/2013] [Accepted: 02/12/2013] [Indexed: 05/22/2023]
Abstract
We report the presence of Mesorhizobium, a genus best known for its nitrogen-fixing symbiosis with terrestrial legumes, associated with the marine polychaete Meganerilla bactericola (Annelida: Nerillidae). Abundant epibionts were previously described as coating the exterior of M. bactericola, which is found within the anoxic sulfide-oxidizing microbial mats of the Santa Barbara Basin, California, USA. 16S rRNA investigation of the bacterial community associated with this polychaete discovered the presence of bacteria belonging to Mesorhizobium. We identified these bacteria using phylogenetic analyses of 16S rRNA and three additional functional genes, nifH, atpD and recA, and group-specific fluorescence in situ hybridization (FISH).
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Affiliation(s)
- Mindi M Summers
- Marine Biology Research Division, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA, USA.
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Mansfeldt T, Overesch M. Arsenic mobility and speciation in a gleysol with petrogleyic properties: a field and laboratory approach. JOURNAL OF ENVIRONMENTAL QUALITY 2013; 42:1130-1141. [PMID: 24216364 DOI: 10.2134/jeq2012.0225] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Naturally elevated levels of As have been observed in some iron-enriched lowland soils of the southern Münsterland, Germany. To determine whether As is mobilized by the reductive dissolution of As-hosting Fe oxides at reducing soil conditions, the release of arsenate and arsenite was investigated in the field for 24 mo and in laboratory experiments. The grassland Gleysol consists of oximorphic soil horizons (Ah 0-15, Bg 15-35, CrBg 35-70 cm) developed from fluvial loam overlaying sand with reductomorphic properties (2Cr, +70 cm). The soil has petrogleyic properties due to enrichment of oxidic Fe in the Bg and CrBg horizons (275 and 390 g kg, respectively). Most of the petrogleyic Fe belonged to nanosized goethite, whereas ferrihydrite was dominant in the topsoil. Arsenic levels of 149 mg kg were found in the topsoil. Levels peaked in the oximorphic soil horizons (626 and 999 mg kg, respectively) and were lowest in the sand (12 mg kg). Sequential fractionation revealed that 84 to 96% of the As in the oximorphic horizons was associated with Fe oxides. Water saturation in combination with soil temperatures above 5 to 10°C resulted in a fast decrease of the redox potential (up to -120 mV) and release of As (up to 35 μg L) with Fe into the soil solution only in the Ah horizon. Although the petrogleyic horizons were mostly water saturated with reducing conditions, no As release was observed. A lack of As mobilization was confirmed in experiments performed under fixed redox conditions; neither Fe nor As was released into solution at an appropriate redox potential. The As species distribution showed redox disequilibrium because arsenate was detected under reducing conditions and arsenite under oxidizing conditions. We conclude that microbial-mediated reductive dissolution of Fe oxides pushes the As mobilization in the topsoil; water saturation and soil temperature were key factors. The dominance of goethite, which is more resistant to microbial reduction, and/or the possible readsorption of released As onto remaining or newly formed Fe oxide surfaces is responsible for the absent As mobilization in the petrogleyic horizons.
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Talano MA, Cejas RB, González PS, Agostini E. Arsenic effect on the model crop symbiosis Bradyrhizobium-soybean. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2013; 63:8-14. [PMID: 23228549 DOI: 10.1016/j.plaphy.2012.11.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/10/2012] [Accepted: 11/07/2012] [Indexed: 06/01/2023]
Abstract
Soybean (Glycine max) is often being cultivated in soils with moderate to high arsenic (As) concentrations or under irrigation with As contaminated groundwater. The purpose of this study was to determine the effect of As on soybean germination, development and nodulation in soybean-Bradyrhizobium japonicum E109 symbiosis, as a first-step approach to evaluate the impact of As on soybean production. Semi-hydroponic assays were conducted using soybean seedlings inoculated and non-inoculated with B. japonicum E109 and treated with arsenate or arsenite. Soybean germination and development, at early stage of growth, were significantly reduced from 10 μM arsenate or arsenite. This also was seen for soybean seedlings inoculated with B. japonicum mainly with arsenite where, in addition, the number of effective nodules was reduced, despite that the microorganism tolerated the metalloid. This minor nodulation could be due to a reduced motility (swarming and swimming) of the microorganism in presence of As. Arsenic concentration in roots was about 250-times higher than in shoots. Transference coefficient values indicated that As translocation to aerial parts was low and As accumulated mainly in roots, without significant differences between inoculated and non-inoculated plants. The presence of As restricted soybean-B. japonicum symbiosis and hence, the efficiency of most used commercial inoculants for soybean. Thus, water and/or soils containing As would negatively impact on soybean production, even in plants inoculated with B. japonicum E109.
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Affiliation(s)
- Melina A Talano
- Departamento de Biología Molecular, FCEFQyN, Universidad Nacional de Río Cuarto, Ruta Nacional 36 Km 601, CP 5800 Río Cuarto, Córdoba, Argentina.
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Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Spröer C, Overmann J. Reclassification and emended description of
Caulobacter leidyi
as Sphingomonas leidyi comb. nov., and emendation of the genus
Sphingomonas. Int J Syst Evol Microbiol 2012; 62:2835-2843. [DOI: 10.1099/ijs.0.039636-0] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
‘
Caulobacter leidyi
’ DSM 4733T has been shown to be affiliated with the family
Sphingomonadaceae
instead of the
Caulobacteraceae
, and due to its poor characterization has been omitted from the current edition of Bergey’s Manual of Systematic Bacteriology and removed to limbo. We isolated a novel sphingoglycolipid-containing dimorphic prosthecate bacterium, designated strain 247, from a pre-alpine freshwater lake. Strain 247 and ‘
Caulobacter leidyi
’ DSM 4733T were characterized in detail. The rod-shaped cells were Gram-stain-negative, aerobic, catalase- and oxidase-positive, and formed a stalk or polar flagellum. Both strains grew optimally at 28–30 °C, and pH 6.0–8.0. The major fatty acids were C18 : 1ω7c, C16 : 0 and 11-methyl C18 : 1ω7c. C14 : 0 2-OH represents the major 2-hydroxy fatty acid. Q-10 was the major respiratory quinone and the major polar lipids were diphosphatidylglycerol, phosphatidyldimethylethanolamine, phosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, phosphatidylcholine, three glycolipids, two phosphoaminolipids and two unidentified sphingoglycolipids. The major polyamine was sym-homospermidine. The G+C content of genomic DNA of strains 247 and DSM 4733T was 67.6 mol% and 67.0 mol%, respectively. According to 16S rRNA gene sequence analysis and DNA–DNA hybridization, strains DSM 4733T and 247 were phylogenetically closely related (99.6 % 16S rRNA gene sequence similarity, 82.9 % DNA–DNA hybridization value) and affiliated to the genus
Sphingomonas
. The closest recognized species was
Sphingomonas aquatilis
DSM 15581T (98.1 % sequence similarity). In addition, the presence of cystine arylamidase, absence of β-galactosidase, and the inability to utilize l-arabinose, galactose and sucrose distinguished strains DSM 4733T and 247 from most other members of the family
Sphingomonadaceae
. So far, the dimorphic life cycle that involves a prosthecate and a flagellated stage is unique for strains DSM 4733T and 247 among all members of the family
Sphingomonadaceae
. Therefore,
Caulobacter leidyi
is reclassified as Sphingomonas leidyi, with the type strain DSM 4733T ( = ATCC 15260T = CIP 106443T = VKM B-1368T) and strain 247 (DSM 25078 = LMG 26658) as an additional strain of this species.
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Affiliation(s)
- Hong Chen
- Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen Braunschweig GmbH, Germany
- Bereich Mikrobiologie, Department Biologie I, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Mareike Jogler
- Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen Braunschweig GmbH, Germany
- Bereich Mikrobiologie, Department Biologie I, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
| | - Manfred Rohde
- Helmholtz-Zentrum für Infektionsforschung, Braunschweig, Germany
| | - Hans-Peter Klenk
- Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen Braunschweig GmbH, Germany
| | - Hans-Jürgen Busse
- Institute of Bacteriology, Mycology and Hygiene (IBMH), University of Veterinary Medicine Vienna, Austria
| | - Brian J. Tindall
- Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen Braunschweig GmbH, Germany
| | - Cathrin Spröer
- Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen Braunschweig GmbH, Germany
| | - Jörg Overmann
- Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen Braunschweig GmbH, Germany
- Bereich Mikrobiologie, Department Biologie I, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany
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Herbel MJ, Switzer Blum J, Hoeft SE, Cohen SM, Arnold LL, Lisak J, Stolz JF, Oremland RS. Dissimilatory arsenate reductase activity and arsenate-respiring bacteria in bovine rumen fluid, hamster feces, and the termite hindgut. FEMS Microbiol Ecol 2012; 41:59-67. [PMID: 19709239 DOI: 10.1111/j.1574-6941.2002.tb00966.x] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
Abstract Bovine rumen fluid and slurried hamster feces completely reduced millimolar levels of arsenate to arsenite upon incubation under anoxic conditions. This activity was strongly inhibited by autoclaving or aerobic conditions, and partially inhibited by tungstate or chloramphenicol. The rate of arsenate reduction was faster in feces from a population of arsenate-watered (100 ppm) hamsters compared to a control group watered without arsenate. Using radioisotope methods, arsenate reductase activity in hamster feces was also detected at very low concentrations of added arsenate ( approximately 10 muM). Bacterial cultures were isolated from these materials, as well as from the termite hindgut, that grew using H(2) as their electron donor, acetate as their carbon source, and arsenate as their respiratory electron acceptor. The three cultures aligned phylogenetically either with well-established enteric bacteria, or with an organism associated with feedlot fecal wastes. Because arsenite is transported across the gut epithelium more readily than arsenate, microbial dissimilatory reduction of arsenate in the gut may promote the body's absorption of arsenic and hence potentiate its toxicity.
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Affiliation(s)
- Mitchell J Herbel
- US Geological Survey, ms 480, 345 Middlefield Road, Menlo Park, CA 94025, USA
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47
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Mercer TG, Frostick LE. Leaching characteristics of CCA-treated wood waste: a UK study. THE SCIENCE OF THE TOTAL ENVIRONMENT 2012; 427-428:165-174. [PMID: 22575377 DOI: 10.1016/j.scitotenv.2012.04.008] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/15/2012] [Revised: 04/04/2012] [Accepted: 04/04/2012] [Indexed: 05/31/2023]
Abstract
CCA-treated wood is expected to increase in the UK waste stream over the next 20-50 years. The potential pollution from this waste has been evaluated through two leaching studies, one based upon batch leaching tests and another based upon a series of lysimeter tests. The aim of the studies was to characterise the behaviour of arsenic (As), chromium (Cr) and copper (Cu) from this wood when applied to soil as a mulch. Results demonstrate that all three elements leach from CCA waste wood, occasionally in concentrations exceeding regulatory thresholds by two to three orders of magnitude. In the lysimeter study, wood mulch monofills and wood mulch in combination with soil were used to monitor the leaching of As, Cr and Cu. Peak concentrations for As, Cr and Cu were 1885 μg/l, 1243 μg/l and 1261 μg/l, respectively. Freshly treated wood leached 11, 23 and 33 times more Cu, Cr and As, respectively than weathered wood. The toxic and mobile species of arsenic (As III, As V) were detected. Leaching in the CCA wood monofill was influenced by rainfall, with higher concentrations of metal(loid)s produced in lower intensity events. As and Cu were mobilised preferentially, with all metals exhibiting similar temporal trends. Retention of leached metal(loid)s was observed in lysimeters containing soil. Leaching processes appear to be favoured by the chipping process, diffusion and weathering. This study has shown that weathered waste wood mulch can cause significant pollution in soil water with potential impacts on both the environment and human health.
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Affiliation(s)
- T G Mercer
- School of Physical and Geographical Sciences, Keele University, Staffordshire, England, ST5 5BG, United Kingdom.
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Abstract
In this study with the model organism Agrobacterium tumefaciens, we used a combination of lacZ gene fusions, reverse transcriptase PCR (RT-PCR), and deletion and insertional inactivation mutations to show unambiguously that the alternative sigma factor RpoN participates in the regulation of As(III) oxidation. A deletion mutation that removed the RpoN binding site from the aioBA promoter and an aacC3 (gentamicin resistance) cassette insertional inactivation of the rpoN coding region eliminated aioBA expression and As(III) oxidation, although rpoN expression was not related to cell exposure to As(III). Putative RpoN binding sites were identified throughout the genome and, as examples, included promoters for aioB, phoB1, pstS1, dctA, glnA, glnB, and flgB that were examined by using qualitative RT-PCR and lacZ reporter fusions to assess the relative contribution of RpoN to their transcription. The expressions of aioB and dctA in the wild-type strain were considerably enhanced in cells exposed to As(III), and both genes were silent in the rpoN::aacC3 mutant regardless of As(III). The expression level of glnA was not influenced by As(III) but was reduced (but not silent) in the rpoN::aacC3 mutant and further reduced in the mutant under N starvation conditions. The rpoN::aacC3 mutation had no obvious effect on the expression of glnB, pstS1, phoB1, or flgB. These experiments provide definitive evidence to document the requirement of RpoN for As(III) oxidation but also illustrate that the presence of a consensus RpoN binding site does not necessarily link the associated gene with regulation by As(III) or by this sigma factor.
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49
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Inhibition of microbial arsenate reduction by phosphate. Microbiol Res 2012; 167:151-6. [DOI: 10.1016/j.micres.2011.05.007] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2010] [Revised: 05/13/2011] [Accepted: 05/13/2011] [Indexed: 11/22/2022]
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50
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Sri Lakshmi Sunita M, Prashant S, Bramha Chari PV, Nageswara Rao S, Balaravi P, Kavi Kishor PB. Molecular identification of arsenic-resistant estuarine bacteria and characterization of their ars genotype. ECOTOXICOLOGY (LONDON, ENGLAND) 2012; 21:202-212. [PMID: 21879358 DOI: 10.1007/s10646-011-0779-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 08/19/2011] [Indexed: 05/31/2023]
Abstract
In the present study, 44 arsenic-resistant bacteria were isolated through serial dilutions on agar plate with concentrations ≥0.05 mM of sodium arsenite and ≥10 mM of sodium arsenate from Mandovi and Zuari--estuarine water systems. The ars genotype characterization in 36 bacterial isolates (resistant to 100 mM of sodium arsenate) revealed that only 17 isolates harboured the arsA (ATPase), B (arsenite permease) and C (arsenate reductase) genes on the plasmid DNA. The arsA, B and C genes were individually detected using PCR in 16, 9 and 13 bacterial isolates respectively. Molecular identification of the 17 isolates bearing the ars genotype was carried using 16S rDNA sequencing. A 1300 bp full length arsB gene encoding arsenite efflux pump and a 409 bp fragment of arsC gene coding for arsenate reductase were isolated from the genera Halomonas and Acinetobacter. Phylogenetic analysis of arsB and arsC genes indicated their close genetic relationship with plasmid borne ars genes of E. coli and arsenate reductase of plant origin. The putative arsenate reductase gene isolated from Acinetobacter species complemented arsenate resistance in E. coli WC3110 and JM109 validating its function. This study dealing with isolation of native arsenic-resistant bacteria and characterization of their ars genes might be useful to develop efficient arsenic detoxification strategies for arsenic contaminated aquifers.
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