Humic substances in soils: are they really chemically distinct?

The redox reactions of U(VI)/UO2 on Tamusu claystone: Effects of Fe2+/Fe3+ and organic matters

The claystone-based Tamusu area in the Bayingebi Basin, Inner Mongolia, is preselected as a China's high-level radioactive waste (HLRW) repository site. This study investigated the redox reactions of U(VI)/UO2 on Tamusu claystone. Five Tamusu claystone samples collected from boreholes Tzk1 and Tzk2 at different depths were used for batch experiments at pH ∼5.0, ∼7.0, and ∼9.0. These claystones contain considerable amounts of organic matters and Fe2+-containing minerals such as pyrite, fluorannite, and ankerite. Results showed that aqueous U(VI) could be partially reduced to U(IV) and/or U(V)-containing precipitates (U3O8, U4O9, etc.) by these Tamusu claystones, and the reaction is more favorable under acidic condition. We proposed that leaching of the structural Fe2+ followed by surface adsorption and interface reaction, is the primary mechanism responsible for U(VI) reduction. Under alkaline condition, organic matters might dominate the partial reduction of aqueous U(VI). Besides, the phosphorus-containing spots on Tamusu claystone surfaces are the reactive sites for U aggregation, implying the possible formation of U(VI)- and/or U(IV)-phosphate minerals. It is important to note that, due to the presence of minor Fe3+ in Tamusu claystones, the high-purity UO2 could undergo partial oxidation to U4O9 and/or U3O8. Therefore, insoluble UO2+x (0 < x ≤ 0.67) is proposed to be the most thermodynamically stable form in Tamusu claystone. This study enhances our comprehension of the essential geochemical processes of uranium in claystone surroundings, but also offers crucial information for the safety evaluation of China's HLRW repository.

Mechanistic study of the increased phototoxicity of titanium dioxide nanoparticles to Chlorella vulgaris in the presence of NOM eco-corona

Widespread applications and release of photoactive nanoparticles (NPs) such as titanium dioxide (TiO₂) into environmental matrices warrant mechanistic investigations addressing toxicity of NPs under environmentally relevant conditions. Accordingly, we investigated the effects of surface adsorbed natural organic matters (NOMs) such as humic acid, tannic acid and lignin on the band gap energy, abiotic reactive oxygen species (ROS) generation, surface chemistry and phototoxicity of TiO₂ NPs. Initially, a liquid assisted grinding method was optimized to produce TiO₂ NPs with a NOM layer of defined thickness for further analysis. Generally, adsorption of NOM reduced the band-gap energy of TiO₂ NPs from 3.08 eV to 0.56 eV with humic acid, 1.92 eV with tannic acid and 2.48 eV with lignin. Light activated ROS generation by TiO₂ NPs such as hydroxyl radicals, however, was reduced by 4, 2, 9 times in those coated with humic acid, tannic acid and lignin, respectively. This reduction in ROS despite decrease in band gap energy corroborated with the decreased surface oxygen vacancy (as revealed by X-ray Photoelectron Spectroscopy (XPS)) and quenching of ROS by surface adsorbed NOM. Despite the reduced ROS generation, the NOM-modified TiO₂ NPs exhibited an increased phototoxicity to Chlorella vulgaris in comparison to pristine TiO₂ NPs. Further analysis suggested that photoactivation of NOM modified TiO₂ NPs releases toxic degradation products. Findings from our studies thus provide mechanistic insight into the ecotoxic potential of NOM-modified TiO₂ NPs when exposed to light in the environment.

Exogenous microbial antagonism affects the bioaugmentation of humus formation under different inoculation using Trichoderma reesei and Phanerochaete chrysosporium

This study was aimed at exploring the effect of antagonism of Trichoderma reesei (T.r) and Phanerochaete chrysosporium (P.c) on humification during fermentation of rice (RS) and canola straw (CS). Results showed that exogeneous fungi accelerated straw degradation and enzyme activities of CMCase, xylanase and LiP. P.c inhibited the activity of LiP when co-existing with T.r beginning, it promoted the degradation of lignin and further increased the production of humus-like substances (HLS) and humic-like acid (HLA) in later fermentation when nutrients were insufficient. The HLS of RTP was 54.9 g/kg RS, higher than the other treatments, and displayed more complex structure and higher thermostability. Brucella and Bacillus were the main HLA bacterial producers. P.c was the HLA fungal producer, while T.r assisted FLA and polyphenol transformation. Therefore, RTP was recommended to advance technologies converting crop straw into humus resources.

A data-driven approach for understanding the structure dependence of redox activity in humic substances

Humic substances (HS) can facilitate electron transfer during biogeochemical processes due to their redox properties, but the structure-redox activity relationships are still difficult to describe and poorly understood. Herein, the linear (Partial Least Squares regressions; PLS) and nonlinear (artificial neural network; ANN) models were applied to monitor the structure dependence of HS redox activities in terms of electron accepting (EAC), electron donating (EDC) and overall electron transfer capacities (ETC) using its physicochemical features as input variables. The PLS model exhibited a moderate ability with R² values of 0.60, 0.53 and 0.65 to evaluate EAC, EDC and ETC, respectively. The variable influence in the projection (VIP) scores of the PLS identified that the phenols, quinones and aromatic systems were particularly important for describing the redox activities of HS. Compared with the PLS model, the back-propagation ANN model achieved higher performance with R² values of 0.81, 0.65 and 0.78 for monitoring the EAC, EDC and ETC, respectively. Sensitivity analysis of the ANN separately identified that the EAC highly depended on quinones, aromatics and protein-like fluorophores, while the EDC depended on phenols, aromatics and humic-like fluorophores (or stable free radicals). Additionally, carboxylic groups were the best indicator for evaluating both the EAC and EDC. Good model performances were obtained from the selected features via the PLS and sensitivity analysis, further confirming the accuracy of describing the structure-redox activity relationships with these analyses. This study provides a potential approach for identifying the structure-activity relationships of HS and an efficient machine-learning model for predicting HS redox activities.

Clarifying the evidence for microbial- and plant-derived soil organic matter, and the path toward a more quantitative understanding

Predicting and mitigating changes in soil carbon (C) stocks under global change requires a coherent understanding of the factors regulating soil organic matter (SOM) formation and persistence, including knowledge of the direct sources of SOM (plants vs. microbes). In recent years, conceptual models of SOM formation have emphasized the primacy of microbial-derived organic matter inputs, proposing that microbial physiological traits (e.g., growth efficiency) are dominant controls on SOM quantity. However, recent quantitative studies have challenged this view, suggesting that plants make larger direct contributions to SOM than is currently recognized by this paradigm. In this review, we attempt to reconcile these perspectives by highlighting that variation across estimates of plant- versus microbial-derived SOM may arise in part from methodological limitations. We show that all major methods used to estimate plant versus microbial contributions to SOM have substantial shortcomings, highlighting the uncertainty in our current quantitative estimates. We demonstrate that there is significant overlap in the chemical signatures of compounds produced by microbes, plant roots, and through the extracellular decomposition of plant litter, which introduces uncertainty into the use of common biomarkers for parsing plant- and microbial-derived SOM, especially in the mineral-associated organic matter (MAOM) fraction. Although the studies that we review have contributed to a deeper understanding of microbial contributions to SOM, limitations with current methods constrain quantitative estimates. In light of recent advances, we suggest that now is a critical time to re-evaluate long-standing methods, clearly define their limitations, and develop a strategic plan for improving the quantification of plant- and microbial-derived SOM. From our synthesis, we outline key questions and challenges for future research on the mechanisms of SOM formation and stabilization from plant and microbial pathways.

Electron shuttles enhanced the removal of antibiotics and antibiotic resistance genes in anaerobic systems: A review

The environmental and epidemiological problems caused by antibiotics and antibiotic resistance genes have attracted a lot of attention. The use of electron shuttles based on enhanced extracellular electron transfer for anaerobic biological treatment to remove widespread antibiotics and antibiotic resistance genes efficiently from wastewater or organic solid waste is a promising technology. This paper reviewed the development of electron shuttles, described the mechanism of action of different electron shuttles and the application of enhanced anaerobic biotreatment with electron shuttles for the removal of antibiotics and related genes. Finally, we discussed the current issues and possible future directions of electron shuttle technology.

Comparison of Sample Preparation Techniques for the (-)ESI-FT-ICR-MS Analysis of Humic and Fulvic Acids

Soil organic matter (SOM) plays a key role in the global carbon and nitrogen cycles. Soil biogeochemistry is regularly studied by extracting the base-soluble fractions of SOM: acid-insoluble humic acid (HA) and acid-soluble fulvic acid (FA). Electrospray ionization-Fourier transform-ion cyclotron resonance-mass spectrometry (ESI-FT-ICR-MS) is commonly utilized for molecularly characterizing these fractions. Different sample preparation techniques exist for the analysis of HA and FA though questions remain regarding data comparability following different preparations. Comparisons of different sample preparation techniques here revealed that the negative-mode ESI-FT-ICR-MS analytical window can be skewed to detect different groups of molecules, with primary differences in oxygenation, aromaticity, and molecular weight. It was also observed that HA and FA from soils versus an aquatic matrix behaved very differently. Thus, we conclude that sample preparation techniques determined to be "most optimal" in our study are in no way universal. We recommend that future studies of HA and FA involve similar comparative studies for determining the most suitable sample preparation technique for their particular type of HA or FA matrices. This will enhance data comparability among different studies and environmental systems and ultimately allow us to better understand the complex composition of environmental matrices.

Structural characterization using 2D NMR spectroscopy and TMAH-GC × GC-MS: Application to humic acids from soils of an integrated agricultural system and an Atlantic native forest

Understanding the chemical make-up of soils and their structure is critical for constraining the role of soil organic matter (SOM) into the global biogeochemical cycles, as well as to understand the capability of SOM to sequester carbon and mitigate greenhouse gas emissions. Here, we use two-dimensional ¹H-¹³C heteronuclear single quantum coherence nuclear magnetic resonance (2D ¹H-¹³C HSQC NMR) spectroscopy to structurally characterize the most refractory component of SOM, the humic acid (HA). The observations from 2D ¹H-¹³C HSQC NMR were coupled with lignin phenol and fatty acid measurements using tetramethylammonium hydroxide (TMAH) thermochemolysis - two-dimensional gas chromatography - mass spectrometry (TMAH-GC × GC-MS). We studied humic acids extracted from an integrated Crop - Livestock - Forest System (CLFS) agricultural area and an undisturbed Atlantic Native Forest (NF) area. We evaluated soils from two different depths: the topsoil (0-20 cm) and subsoil (60-100 cm) layers, and reveal the presence of oxidized ligninaceous phenols as we had previously hypothesized. Collectively, our results indicate that there are significant oxidative processes with increasing soil depth which are more pronounced in the CLFS relative to the NF area. Degradation of stearic acid with increasing depth in the CLFS soils indicated that the CLFS is more microbiologically active than NF. Therefore, CLFS is less biochemically stable than we originally perceived. The enhanced bio-reactivity of CLFS is likely driving the enhanced carbon sequestration in the CLFS soils. This is perhaps due to the diversity of biomass remnants available at the CLFS soil rhizosphere which allows for more different types of biomass to be sequestered as oxidized ligninaceous phenols. Our results employing structural characterization with 2D ¹H-¹³C HSQC NMR and TMAH-GC × GC-MS provide a new layer of knowledge about the practice of integrated agricultural systems and allow us to understand the structure and fate of sequestered carbon in soils from different soil environments.

1H-13C heteronuclear single quantum coherence NMR evidence for iodination of natural organic matter influencing organo-iodine mobility in the environment

The complex biogeochemical behavior of iodine (I) isotopes and their interaction with natural organic matter (NOM) pose a challenge for transport models. Here, we present results from iodination experiments with humic acid (HA) and fulvic acid (FA) using ¹H-¹³C heteronuclear single quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectroscopy. Even though not a quantitative approach, ¹H-¹³C HSQC NMR corroborated that iodination of NOM occurs primarily through aromatic electrophilic substitution of proton by I, and also revealed how iodination chemically alters HA and FA in a manner that potentially affects the mobility of iodinated NOM in the environment. Three types of iodination experiments were conducted with HA and FA: a) non-enzymatic iodination by IO₃^- (pH 3) and I^- (pH 4 and 7), b) addition of lactoperoxidase to promote I^--iodination in the presence of the co-substrate, H₂O₂ (pH 7), and c) addition of laccase for facilitating I^--iodination in the presence of O₂, with or without a mediator (pH 4). When mediators or H₂O₂ were present, extracellular oxidases and peroxidases enhanced I^- incorporation into NOM by between 54% and 3400%. Iodination of HA, which was less than that of FA, enhanced HA's stability (inferred from increases in aliphatic compounds, decreases in carbohydrate moieties, and thus increased molecular hydrophobicity) yet reduced HA's tendency to incorporate more iodine. As such, HA is expected to act more as a sink for iodine in the environment. In contrast, iodination of FA appeared to generate additional iodine binding sites, which resulted in greater iodine uptake capability and enhanced mobility (inferred from decreases in aliphatic compounds, increases in carbohydrates, and thus decreases in molecular hydrophobicity). These results indicate that certain NOM moieties may enhance while others may inhibit radioiodine mobility in the aqueous environment.

A History of Molecular Level Analysis of Natural Organic Matter by FTICR Mass Spectrometry and The Paradigm Shift in Organic Geochemistry

Natural organic matter (NOM) is a complex mixture of biogenic molecules resulting from the deposition and transformation of plant and animal matter. It has long been recognized that NOM plays an important role in many geological, geochemical, and environmental processes. Of particular concern is the fate of NOM in response to a warming climate in environments that have historically sequestered carbon (e.g., peatlands and swamps) but may transition to net carbon emitters. In this review, we will highlight developments in the application of high-field Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) in identifying the individual components of complex NOM mixtures, focusing primarily on the fraction that is dissolved in natural waters (dissolved organic matter or DOM). We will first provide some historical perspective on developments in FTICR technology that made molecular-level characterizations of DOM possible. A variety of applications of the technique will then be described, followed by our view of the future of high-field FTICR MS in carbon cycling research, including a particularly exciting metabolomic approach.

Pathway analysis of the biodegradation of lignin by Brevibacillus thermoruber

With increased interest in the biodegradation of lignin, there is a pressing need to evaluate the feasibility of using microorganisms for lignin degradation. A novel Bacillus strain was separated from compost and identified as Brevibacillus thermoruber. B. thermoruber showed excellent performance in lignin degradation and degraded 81.97% of lignin after 7 d, which was similar to the lignin degradation rate of fungi. The biodegradation of lignin G and H monomers mainly proceeded via the β-ketoadipate pathway at 37 °C. At 55 °C, the degradation product of lignin S monomer was mainly a benzoic acid substance, indicating that the lignin was degraded via the benzoic acid pathway. The degradation products of lignin are important precursors for humus formation in compost. The results of this study provide new insights into the biodegradation pathway of lignin in different stages of composting.

The exposome paradigm to predict environmental health in terms of systemic homeostasis and resource balance based on NMR data science

The environment, from microbial ecosystems to recycled resources, fluctuates dynamically due to many physical, chemical and biological factors, the profile of which reflects changes in overall state, such as environmental illness caused by a collapse of homeostasis. To evaluate and predict environmental health in terms of systemic homeostasis and resource balance, a comprehensive understanding of these factors requires an approach based on the "exposome paradigm", namely the totality of exposure to all substances. Furthermore, in considering sustainable development to meet global population growth, it is important to gain an understanding of both the circulation of biological resources and waste recycling in human society. From this perspective, natural environment, agriculture, aquaculture, wastewater treatment in industry, biomass degradation and biodegradable materials design are at the forefront of current research. In this respect, nuclear magnetic resonance (NMR) offers tremendous advantages in the analysis of samples of molecular complexity, such as crude bio-extracts, intact cells and tissues, fibres, foods, feeds, fertilizers and environmental samples. Here we outline examples to promote an understanding of recent applications of solution-state, solid-state, time-domain NMR and magnetic resonance imaging (MRI) to the complex evaluation of organisms, materials and the environment. We also describe useful databases and informatics tools, as well as machine learning techniques for NMR analysis, demonstrating that NMR data science can be used to evaluate the exposome in both the natural environment and human society towards a sustainable future.

Molecular properties of the Humeome of two calcareous grassland soils as revealed by GC/qTOF-MS and NMR spectroscopy

A Humeomic fractionation revealed the humus molecular composition of two uncropped calcareous soils of Northern France and differentiated the soils Humeome by extracting humic components first unbound to the organo-mineral matrix and then liberated from their progressively stronger intermolecular and intramolecular ester and ether linkages. We separated organo- (ORG1-3) and water-soluble (AQU2 and AQU4) fractions, a final extractable fraction (RESOM) and soil residues. Organo-soluble fractions were studied by GC coupled with high-resolution mass spectrometry (GC/qTOF-MS), all fractions underwent mono- and two-dimensional liquid-state NMR (except for the iron-rich AQU4 fraction), while solid-state ¹³C-CPMAS-NMR spectroscopy analyzed soil residues. The Calcaric Leptosol (A) showed a larger mass extraction than the Calcaric Cambisol (B), and a greater cumulative C and N content in its Humeome. Both soils showed the greatest weight yield for AQU4 fraction, followed by ORG2, RESOM, ORG1, AQU2, and ORG3. ORG2 was the most differentiating fraction between the two soils for both compound concentration and diversity, showing a larger C content for soil A than for soil B and a different distribution in aromatic compounds, fatty acids, and dicarboxylic acids. No significant differences between soils were found for ORG 3, suggesting similar processes of OM stabilization for its recalcitrant components, mostly hydrophobic esters of alkanoic, hydroxy, and aromatic acids with linear alkanols. We confirmed that Humeomic fractionation coupled to advanced analytical instrumentations enabled a detailed molecular characterization of the soil Humeome and differentiated between the two calcareous grassland soils and the other soils previously subjected to Humeomics.

Soil Organic Matter Characterization by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry (FTICR MS): A Critical Review of Sample Preparation, Analysis, and Data Interpretation

The biogeochemical cycling of soil organic matter (SOM) plays a central role in regulating soil health, water quality, carbon storage, and greenhouse gas emissions. Thus, many studies have been conducted to reveal how anthropogenic and climate variables affect carbon sequestration and nutrient cycling. Among the analytical techniques used to better understand the speciation and transformation of SOM, Fourier transform ion cyclotron resonance mass spectrometry (FTICR MS) is the only technique that has sufficient mass resolving power to separate and accurately assign elemental compositions to individual SOM molecules. The global increase in the application of FTICR MS to address SOM complexity has highlighted the many challenges and opportunities associated with SOM sample preparation, FTICR MS analysis, and mass spectral interpretation. Here, we provide a critical review of recent strategies for SOM characterization by FTICR MS with emphasis on SOM sample collection, preparation, analysis, and data interpretation. Data processing and visualization methods are presented with suggested workflows that detail the considerations needed for the application of molecular information derived from FTICR MS. Finally, we highlight current research gaps, biases, and future directions needed to improve our understanding of organic matter chemistry and cycling within terrestrial ecosystems.

Bioactivity of Humic Acids Extracted From Shale Ore: Molecular Characterization and Structure-Activity Relationship With Tomato Plant Yield Under Nutritional Stress

The increasing demands for biostimulants in the agricultural market over the last years have posed the problem of regulating this product category by requiring the industry to make available the information about efficacy and safety, including the explanation of mode of action and the definition of bioactive constituents. In the present study, we tested the biostimulant proprieties of a sedimentary shale ore-extracted humic acid (HA) on Micro Tom tomato plants under increasing nutritional stress and investigated the correlation with the chemical features of HA by means of ultra-high resolution FT-ICR MS, FT-ATR, and ¹³C-NMR. Humic acid application proved effective in alleviating the nutritional stress by improving nutrient use efficiency, with results comparable to the control treatment supplied with higher NPK nutrition. Increased yield (up to +19%) and fruit quality (in the range +10-24%), higher ascorbic acid content and a better root growth were the main parameters affected by HA application. Molecular-level characterization identified the possible chemical drivers of bioactivity, and included flavonoids, quinones, and alkaloids among the most represented molecules, some of which exhibiting antioxidant, pro-oxidant, and antimicrobial activity. The redox effect was discussed as a determinant of the delicate homeostasis balance, capable of triggering plant defense response and eventually inducing a protective priming effect on the plants.

Interactions between Humic Substances and Microorganisms and Their Implications for Nature-like Bioremediation Technologies

The state of the art of the reported data on interactions between microorganisms and HSs is presented herein. The properties of HSs are discussed in terms of microbial utilization, degradation, and transformation. The data on biologically active individual compounds found in HSs are summarized. Bacteria of the phylum Proteobacteria and fungi of the phyla Basidiomycota and Ascomycota were found to be the main HS degraders, while Proteobacteria, Actinobacteria, Bacteroidetes, and Firmicutes were found to be the predominant phyla in humic-reducing microorganisms (HRMs). Some promising aspects of interactions between microorganisms and HSs are discussed as a feasible basis for nature-like biotechnologies, including the production of enzymes capable of catalyzing the oxidative binding of organic pollutants to HSs, while electron shuttling through the utilization of HSs by HRMs as electron shuttles may be used for the enhancement of organic pollutant biodegradation or lowering bioavailability of some metals. Utilization of HSs by HRMs as terminal electron acceptors may suppress electron transfer to CO2, reducing the formation of CH4 in temporarily anoxic systems. The data reported so far are mostly related to the use of HSs as redox compounds. HSs are capable of altering the composition of the microbial community, and there are environmental conditions that determine the efficiency of HSs. To facilitate the development of HS-based technologies, complex studies addressing these factors are in demand.

Supramolecular aggregation of colloidal natural organic matter masks priority pollutants released in water from peat soil

Natural organic matter (NOM) from Sphagnum peat soil is extracted in water and subjected to several investigations to obtain structural and conformational information. Data show that the extracted NOM is self-organized in colloidal aggregates of variable sizes (from nano to micro scales, depending on the solvent composition, i.e., ultrapure water, solutions with denaturing agents, acetone, ethanol). Aggregates are formed by highly heterogeneous classes of organic compounds. According to the results of nuclear magnetic resonance and fluorescence measurements, the three-dimensional structure of aggregates, revealed by scanning electron microscope imaging, is supposed to be stabilized by the exposition of polar functional groups to the solvent, with consequent formation of hydrogen bonds, dipole-interactions and cation bridging. In contrast, the inner part of the aggregates displays hydrophobic features and is hypothesized to be further reinforced by the establishment of π-stacking interactions. The structure is assumed to be a supramolecular aggregation of small-medium oligomeric fragments (Max 750 Da) in which priority pollutants are entrapped by dispersive forces. The structures are shown to be nanosized spheroidal particles further aggregated to form higher dimension supra-structures. Carbohydrates play primary role, stabilizing the structure and giving marked hydrophilic properties to the aggregates.

Improved model simulation of soil carbon cycling by representing the microbially derived organic carbon pool

During the decomposition process of soil organic carbon (SOC), microbial products such as microbial necromass and microbial metabolites may form an important stable carbon (C) pool, called microbially derived C, which has different decomposition patterns from plant-derived C. However, current Earth System Models do not simulate this microbially derived C pool separately. Here, we incorporated the microbial necromass pool to the first-order kinetic model and the Michaelis-Menten model, respectively, and validated model behaviors against previous observation data from the decomposition experiments of ¹³C-labeled necromass. Our models showed better performance than existing models and the Michaelis-Menten model was better than the first-order kinetic model. Microbial necromass C was estimated to be 10-27% of total SOC in the study soils by our models and therefore should not be ignored. This study provides a novel modification to process-based models for better simulation of soil organic C under the context of global changes.

Effects of elevation and slope aspect on the distribution of the soil organic carbon associated with Al and Fe mineral phases in alpine shrub-meadow soil

Mountain ecosystems store a large amount of soil organic carbon (SOC) sensitive to global climate change. The SOC associated with Al and Fe minerals is important for SOC retention because of the ubiquitous nature and highly reactive surface properties of these minerals. Topography is also known to impact the distribution and transformation of SOC by creating different microclimates. However, the effect of topography on the distribution of organo-mineral associations has seldom been reported. This study uses a selective dissolution method to quantify the soil carbon (C) fractions associated with Al and Fe minerals in alpine shrub-meadow soil. Na-pyrophosphate (PP), HCl-hydroxylamine (HH) and dithionite-HCl (DH) were used to quantify organo-metal complexes, SOC associated with short-range order (SRO) phases and crystalline phases, respectively. Results suggest that the Al and Fe mineral-associated C accounted for a small proportion of SOC (less than 30%) in each extraction. A higher concentration coupled with a lower percentage of SOC was found in the A horizon compared to the B horizon. A significant correlation was observed between Fe and C in PP and HH extractions, whereas Al was significantly correlated with C in DH extractions. Elevation and slope aspect strongly influenced soil biotic and abiotic parameters, as well as organo-mineral associations. The C fractions extracted by PP and HH were significantly higher in the NE slope aspect than the SW slope aspect. These fractions were positively correlated with soil water content and negatively correlated with soil pH. The C fractions extracted using DH decreased with increasing elevation and were positively correlated with DH extractable Al. Our results highlight the role of topography on the distribution of organo-mineral associations, which should be considered during the assessment of SOC stability in alpine soils.

Critical review on soil phosphorus migration and transformation under freezing-thawing cycles and typical regulatory measurements

Freezing-thawing period plays an important role in the soil nutrient cycling. The frequency of freezing-thawing cycles (FTCs) can directly affect the supply of effective soil nutrients, further influences the growth and development of crops. Phosphorus is one of the essential nutrients for crop growth, and almost no compounds in gas form in nature, which is non-renewable resources. In modern agricultural production, phosphorus required by plants is mainly from the soil, but the utilization rate of phosphorus fertilizer in soil is generally only 10%-25%. Therefore, it is of great significance to study phosphorus migration and transformation behavior of soil in the non-growth period and related interfacial processes for improving the utilization efficiency of phosphorus fertilizer, increasing crop yield, reducing excessive application of phosphorus fertilizer, and subsiding environmental pollution. This paper systematically concludes key interfacial process of soil phosphorus in freezing-thawing soil system and relative mechanisms describing migration and transformation behavior of soil phosphorus. Besides, it summarizes the mediating effects of widely used soil conditioner on phosphorus cycling. The results show that freezing- thawing will destroy the structure of the soil, causing phosphorus to migrate along with runoff, soil water and heat movement. It also affects the types of microorganisms, the activity of microbial communities and the oxidation-reduction reaction of related minerals, making the phosphorus in soil from an unstable form to an active form. Biochar and humic substances can improve the physical and chemical properties of the soil, and have favorable effects on soil during freezing-thawing period. This review has important significance for the rational utilization of existing phosphorus resources, the maintenance of soil phosphorus cycle balance and the sustainable development of agriculture, meanwhile, has guiding significance for the reasonable utilization of agricultural wastes.

The role of humic substances in mitigating greenhouse gases emissions: Current knowledge and research gaps

Humic substances (HS) constitute a highly transformed fraction of natural organic matter (NOM) with a heterogeneous structure, which is rich in electron-transferring functional moieties. Because of this feature, HS display a versatile reactivity with a diversity of environmentally relevant organic and inorganic compounds either by abiotic or microbial processes. Consequently, extensive research has been conducted related to the potential of HS to drive relevant processes in bio-engineered systems, as well as in the biogeochemical cycling of key elements in natural environments. Nevertheless, the increase in the number of reports examining the relationship between HS and the microorganisms related to the production and consumption of greenhouse gases (GHG), the main drivers of global warming, has just emerged in the last years. In this paper, we discuss the importance of HS, and their analogous redox-active organic molecules (RAOM), on controlling the emission of three of the most relevant GHG due to their tight relationship with microbial activity, their abundance on the Earth's atmosphere, and their important global warming potentials: carbon dioxide (CO₂), methane (CH₄) and nitrous oxide (N₂O). The current knowledge gaps concerning the microbial component, on-site occurrence, and environmental constraints affecting these HS-mediated processes are provided. Furthermore, strategies involving the metabolic traits that GHG-consuming/HS-reducing and -oxidizing microbes display for the development of environmental engineered processes are also discussed.

Role of clay-associated humic substances in catalyzing bioreduction of structural Fe(III) in nontronite by Shewanella putrefaciens CN32

Previous studies have shown that humic substances can serve as electron shuttle to catalyze bioreduction of structural Fe(III) in clay minerals, but it is unclear if clay-sorbed humic substances can serve the same function. It is unknown if the electron shuttling function is dependent on electron donor type and if humic substances undergo change as a result. In this study, humic acid (HA) and fulvic acid (FA) were sorbed onto nontronite (NAu-2) surface. Structural Fe(III) in HA- and FA-coated NAu-2 samples was bioreduced by Shewanella putrefaciens CN32 using H₂ and lactate as electron donors. The results showed a contrasting effect of humic substances on bioreduction of structural Fe(III), depending on the electron donor type. With H₂ as electron donor, humic substances had little effect on bioreduction of Fe(III) (the reduction extent: 26.2%, 27.4%, 29.3% for HA-coated, FA-coated, and uncoated NAu-2, respectively). In contrast, these substances significantly enhanced bioreduction of Fe(III) with lactate as electron donor (the reduction extent: 20.2%, 20.7%, 11.5% for HA-coated, FA-coated, and uncoated NAu-2, respectively). This contrasting behavior is likely caused by the difference in reaction free energy and electron transport process between H₂ and lactate. When H₂ served as electron donor, more energy was released than when lactate served as electron donor. In addition, because of different cellular locations of lactate dehydrogenase (inner membrane) and H₂ hydrogenase (the periplasm), electrons generated by H₂ hydrogenase may pass through the electron transport chain more rapidly than those generated from lactate dehydrogenase. Through their functions as electron shuttle and/or carbon source, clay-sorbed HA/FA underwent partial transformation to amino acids and other compounds. The availability of external carbon source played an important role in the amount and type of secondary product generation. These results have important implications for coupled iron and carbon biogeochemical cycles in clay- and humic substance-rich environments.

Microbial Interaction with Clay Minerals and Its Environmental and Biotechnological Implications

Clay minerals are very common in nature and highly reactive minerals which are typical products of the weathering of the most abundant silicate minerals on the planet. Over recent decades there has been growing appreciation that the prime involvement of clay minerals in the geochemical cycling of elements and pedosphere genesis should take into account the biogeochemical activity of microorganisms. Microbial intimate interaction with clay minerals, that has taken place on Earth’s surface in a geological time-scale, represents a complex co-evolving system which is challenging to comprehend because of fragmented information and requires coordinated efforts from both clay scientists and microbiologists. This review covers some important aspects of the interactions of clay minerals with microorganisms at the different levels of complexity, starting from organic molecules, individual and aggregated microbial cells, fungal and bacterial symbioses with photosynthetic organisms, pedosphere, up to environmental and biotechnological implications. The review attempts to systematize our current general understanding of the processes of biogeochemical transformation of clay minerals by microorganisms. This paper also highlights some microbiological and biotechnological perspectives of the practical application of clay minerals–microbes interactions not only in microbial bioremediation and biodegradation of pollutants but also in areas related to agronomy and human and animal health.

Testing Os Staining Approach for Visualizing Soil Organic Matter Patterns in Intact Samples via X-ray Dual-Energy Tomography Scanning

Challenges with in situ visualization of nonparticulate organics in porous materials limit understanding and modeling processes of transport, decomposition, and storage of organic compounds. In particular, it impedes deciphering the mechanisms driving accumulation and protection of soil organic matter (SOM), processes crucial for sustaining soil fertility and mitigating effects of global climate change. A recently proposed method of staining soil organics by OsO₄ vapors with subsequent dual-energy X-ray computed microtomography scanning (μCT) offers new opportunities to visualize SOM within intact soil matrix. Our objective was to test the method's performance in staining different organic materials located in media with contrasting pore characteristics: (1) roots of switchgrass (Panicum virgatum L.), either placed within fine and coarse sands or grown within soil microcores, (2) biochar fragments, and (3) soils with relatively low and high C contents. We found that the method was effective in staining organic materials of root origin and the organics associated with fine soil particles, but not the biochar. The estimated percent of total C that reacted with OsO₄ vapors ranged from 0.7% in plant roots to 3.2% in sand-free fraction of the high C soil and was only 0.2% in the studied biochar. Total soil C and Os concentrations were strongly linearly related, suggesting a potential for future method development. However, we would recommend caution when interpreting the results in cases when gas diffusion through the soil matrix is limited.

Chlorines Are Not Evenly Substituted in Chlorinated Paraffins: A Predicted NMR Pattern Matching Framework for Isomeric Discrimination in Complex Contaminant Mixtures

Chlorinated paraffins (CPs) can be mixtures of nearly a half-million possible isomers. Despite the extensive use of CPs, their isomer composition and effects on the environment remain poorly understood. Here, we reveal the isomeric distributions of nine CP mixtures with single-chain lengths (C14/15) and varying degrees of chlorination. The molar distribution of C n H2n+2-m Cl m in each mixture was determined using high-resolution mass spectrometry (MS). Next, the mixtures were analyzed by applying both one-dimensional 1H, 13C and two-dimensional nuclear magnetic resonance (NMR) spectroscopy. Due to substantially overlapping signals in the experimental NMR spectra, direct assignment of individual isomers was not possible. As such, a new NMR spectral matching approach that used massive NMR databases predicted by a neural network algorithm to provide the top 100 most likely structural matches was developed. The top 100 isomers appear to be an adequate representation of the overall mixture. Their modeled physicochemical and toxicity parameters agree with previous experimental results. Chlorines are not evenly distributed in any of the CP mixtures and show a general preference at the third carbon. The approach described here can play a key role in understanding of complex isomeric mixtures such as CPs that cannot be resolved by MS alone.

Unrevealing model compounds of soil conditioners impacts on the wheat straw autohydrolysis efficiency and enzymatic hydrolysis

BACKGROUND

Soil-derived exogenous ash (EA) poses a challenge toward lignocellulosic autohydrolysis due to its buffering capacity. Previous works focusing on this phenomenon have failed to also investigate the role that soluble salts, and organic matter plays in this system. Herein, sodium phosphate and sodium humate were employed as model buffering compounds representing soluble salts and organic matter and dosed into a de-ashed wheat straw (DWS) autohydrolysis process to show the potential impacts of WS attached soil conditioners on the WS autohydrolysis efficiency which would further affect the enzymatic digestibility of autohydrolyzed WS.

RESULTS

Results showed that with the increasing loadings of sodium phosphate and sodium humate resulted in elevated pH values (from 4.0 to 5.1 and from 4.1 to 4.7, respectively). Meanwhile, the reductions of xylan removal yields from ~ 84.3-61.4% to 72.3-53.0% by loading (1-30 g/L) sodium phosphate and sodium humate during WS autohydrolysis lead to a significant decrease of cellulose accessibilities which finally lead to a reduction of the enzymatic digestibility of autohydrolyzed WS from ~ 75.4-77.2% to 47.3-57.7%.

CONCLUSION

The existence of different types soil conditioner model compounds results in various component fractions from autohydrolyzed WS in the process of autohydrolysis. A lack of sufficient xylan removal was found to drive the significant decrease in enzymatic accessibility. The results demonstrated the various effects of two typical tested soil conditioners on WS autohydrolysis and enzymatic hydrolysis.

Microbially reducible extent of solid-phase humic substances is governed by their physico-chemical protection in soils: Evidence from electrochemical measurements

A significant fraction of humic substances (HS) in natural soils is protected due to the interactions with mineral surfaces or occlusion within aggregates and clay microstructures, which could render the solid-phase HS less spatially accessible to microorganisms and thus affect their extracellular electron transfer. However, more diverse and convincing evidence is needed to further verify the link between extracellular electron transfer of solid-phase HS and their physico-chemical protection mechanisms in soils. In this study, soil physical fractionation and mediated electrochemical measurements were combined for the first time to assess the microbially reducible extents of solid-phase HS in mineral soils. The results show that the solid-phase HS in soil contain several pools with different microbially reducible extents, due to the fact that different pools employ distinct protection mechanisms of soil organic matter against microbial attacks; the particulate HS exert the greatest microbially reducible extent, followed by the microaggregate occluded HS and non-aggregated silt associated HS, and non-aggregated clay associated HS exert the lowest microbially reducible extent. Our work provides a new evidence to validate the view that the extracellular electron transfer process of solid-phase HS in natural soils is largely controlled by their physico-chemical protection mechanisms.

Molecular Understanding of Humic Acid-Limited Phosphate Precipitation and Transformation

Phosphorus (P) availability is widely assumed to be limited by the formation of metal (Ca, Fe, or Al) phosphate precipitates that are modulated by soil organic matter (SOM), but the SOM-precipitate interactions remain uncertain because of their environmental complexities. Here, we present a model system by quantifying the in situ nanoscale nucleation kinetics of calcium phosphates (Ca-Ps) on mica in environmentally relevant aqueous solutions by liquid-cell atomic force microscopy. We find that Ca-P precipitate formation is slower when humic acid (HA) concentration is higher. High-resolution transmission electron microscopy observations demonstrate that HA strongly stabilizes amorphous calcium phosphate (ACP), delaying its subsequent transformation to thermodynamically more stable phases. Consistent with the formation of molecular organo-mineral bonding, dynamic force spectroscopy measurements display larger binding energies of organic ligands with certain chemical functionalities on HA to the initially formed ACP than to mica that are responsible for stabilization of ACP through stronger HA-ACP interactions. Our results provide direct evidence for the proposed importance of SOM in inhibiting Ca-P precipitation/transformation. We suggest that similar studies of binding strength in SOM-Fe/Al-P may reveal how both organic matter and metal ions control P availability and fate, and thus the eventual P management for agronomical and environmental sustainability.

Release of sugars and fatty acids from heavy oil biodegradation by common hydrolytic enzymes

In response to recent advances in understanding relating to the remarkable persistence of soil organic matter during burial and diagenesis, we examine the extent to which bitumen compositionally reflects the soil organic matter from which it was derived. Through a simple set of experiments, exposure of bitumen to lipase and cellulase, two enzymes effective in the biodegradation of soil organic matter, resulted in the release of glycerin, palmitic and oleic fatty acids from lipase digestion in addition to the release of glucose, alkylphenols and acyclic polyols from fermentation with cellulase, consistent with the products expected these enzymes. These results are significant in that they suggest that heavy oils are more similar to their soil precursor than previously thought, that biodegradation of bitumen can be accelerated using common over the counter enzymes in aerobic conditions and that heavy oils, which are 1000 times more abundant than coal, can release similar biomolecules as those generated in bioreactor culture or biomass harvest, using two of the most abundantly produced enzymes presently available.

Electrochemical characterization of natural organic matter by direct voltammetry in an aprotic solvent

The complex and indeterminant composition of NOM makes characterization of its redox properties challenging. Approaches that have been taken to address this challenge include chemical probe reactions, potentiometric titrations, chronocoulometry, and voltammetry. In this study, we revisit the use of direct voltammetric methods in aprotic solvents by applying an expanded and refined suite of methods to a large set of NOM samples and model compounds (54 NOM samples from 10 different sources, 7 NOM model compounds, and 2 fresh extracts of plant materials that are high in redox-active quinonoid model compounds dissolved in DMSO). Refinements in the methods of fitting the data obtained by staircase cyclic voltammetry (SCV) provided improved definition of peaks, and square wave voltammetry (SWV), performed under the same conditions as SCV, provided even more reliable identification and quantitation of peaks. Further evidence is provided that DMSO improves the electrode response by unfolding some of the tertiary structure of NOM polymers, thereby allowing greater contact between redox active functional groups and the electrode surface. We averaged experimental peak potentials for all NOM compounds and calculated potentials in water. Average values for Epa1, Epc1, and Ep1 in DMSO were -0.866 ± 0.069, -1.35 ± 0.071, and -0.831 ± 0.051 V vs. Ag/Ag+, and -0.128, -0.613, and -0.0930 V vs. SHE in water. In addition to peak potentials, the breadth of SCV peaks was quantified as a way to characterize the degree to which the redox activity of NOM is due to a continuum of contributing functional groups. The average breadth values were 1.63 ± 0.24, 1.28 ± 0.34, and 0.648 ± 0.15 V for Epa1, Epc1, and Ep1 respectively. Comparative analysis of the overall dataset-from SCV and SWV on all NOMs and model compounds-revealed that NOM redox properties vary over a narrower range than expected based on model compound properties. This lack of diversity in redox properties of NOM is similar to conclusions from other recent work on the molecular structure of NOM, all of which could be the result of selectivity in the common extraction methods used to obtain the materials.

Expression Profiling of Candidate Genes in Sugar Beet Leaves Treated with Leonardite-Based Biostimulant

Leonardite-based biostimulants are a large class of compounds, including humic acid substances. Foliar application of biostimulants at field level improves plant growth, yield and quality through metabolic changes and stimulation of plant proton pumps. The present study aimed at identifying optimum dosage of BLACKJAK, a humic acid-based substance, which is able to modify genes involved in sugar beet growth. Thirty-three genes belonging to various biochemical pathway categories were tested in leaves of treated sugar beet (Beta vulgaris L.) samples to assess gene expression profiling in response to BLACKJAK. Seedlings of a diploid and multigerm variety were grown in plastic pots and sprayed with two dilutions of BLACKJAK (dilution 1:500–1.0 mg C L⁻¹ and dilution 1:1000–0.5 mg C L⁻¹). Leaf samples were collected after 24, 48, and 72 h treatment with BLACKJAK for each dilution. RNA was extracted and the quantification of gene expression was performed while using an OpenArray platform. Results of analysis of variance demonstrated that, 15 genes out of a total of 33 genes tested with OpenArray qPCR were significantly affected by treatment and exposure time. Analysis for annotation of gene products and pathways revealed that genes belonging to the mitochondrial respiratory pathways, nitrogen and hormone metabolisms, and nutrient uptake were up-regulated in the BLACKJAK treated samples. Among the up-regulated genes, Bv_PHT2;1 and Bv_GLN1 expression exerted a 2-fold change in 1:1000 and 1:500 BLACKJAK concentrations. Overall, the gene expression data in the BLACKJAK treated leaves demonstrated the induction of plant growth–related genes that were contributed almost to amino acid and nitrogen metabolism, plant defense system, and plant growth.

Molecular characterization of particulate organic matter in full scale anaerobic digesters: An NMR spectroscopy study

This study assesses the molecular characteristics of particulate organic matter (POM) in agricultural and food waste digesters and elucidates the molecular properties of the recalcitrant POM fraction, which remains in the digestate after AD process. Molecular properties of POM in influent (substrate) and effluent (digestate) of seven full-scale AD plants (three agricultural waste and four food waste digesters) were characterized and compared using solid-state ¹³C cross-polarization magic angle spinning (CP-MAS) and solution-state ¹H,¹³C heteronuclear single-quantum coherence (HSQC) nuclear magnetic resonance (NMR) spectroscopy. Comparison of the POM structural compositions of substrate and digestate from each AD plant revealed an enrichment of protein structures relative to the carbohydrates in most cases, implying a preferential degradation of the carbohydrates over proteins and/or increase of microbial biomass upon AD of agricultural and food wastes. Distinctive molecular structures of labile and recalcitrant fractions of POM, subjected to AD, were identified by comparing the NMR spectra of all substrate and digestate POM. Accordingly, the labile POM fraction in food and agricultural solid wastes is characterized by structural entities of lipids and starch-like carbohydrates, whereas recalcitrant POM structures resemble alkyl and aromatic subunits of amino acids, lignin, and polysaccharides with β-glycosidic linkages. This information serves as a basis to further explore optimization approaches for improving AD of the underutilized POM and the fate of organic matter in digestate-amended arable lands.

Extraction and characterization of extracellular polymeric substances from a mixed fungal culture during the adaptation process with waste printed circuit boards

Extracellular polymeric substances (EPSs) extracted from fungal mycelium by four chemical methods (NaOH, H₂SO₄, formaldehyde-NaOH, glutaraldehyde-NaOH), three physical methods (heating, ultrasound, vibration), and a control method (centrifugation alone) were investigated. Results indicated formaldehyde-NaOH outperformed other methods with 186.6 ± 8.0 mg/g of polysaccharides and 23.2 ± 4.6 mg/g of protein extracted and ensured little contamination by intracellular substances. Thereafter, this method was applied in extracting EPS from a mixed fungal culture in the adaptation process with 0.5% (w/v) waste printed circuit boards (PCBs). With the four adaptation stages continuing, the culture tended to become more sensitive to respond to the external toxic environment characterized by secreting EPS more easily and quickly. The maximum amount of polysaccharides and protein could be achieved in only 3 days both at the 3rd and 4th adaptation stage. Three-dimensional excitation-emission matrix fluorescence spectrum indicated the peaks obtained for EPS were mainly associated to soluble microbial by-product-like and aromatic protein-like compounds. Transmission electron microscopic observation illustrated that although metal ions penetrated into hypha cells, parts of them could be absorbed by EPS, implying that EPS secretion may be a primary protective strategy adopted by the culture.

Accelerating effects of humin on sulfide-mediated azo dye reduction

As an important fraction of humic substances, humin has been found capable of stimulating bioreduction reactions. However, whether humin could promote abiotic reduction and the effects of coexisting soluble humic substance and insoluble mineral remained unsolved. In this study, a humin sample was isolated from a paddy soil. Cyclic voltammetry, electron paramagnetic resonance, Fourier transform infrared spectroscopy and X-ray photoelectron spectroscopy analyses of the humin indicated the existence of redox-active quinone moieties and other oxygen-containing groups. The humin could be reduced by sulfide and its presence stimulated the abiotic reduction of acid red 27 (AR27) and four other azo dyes by sulfide. In the presence of 100-1000 mg/L intact humin, the sulfide-mediated AR27 reduction efficiency in 7 d was enhanced from 56.3% to 92.5%. The stimulating behavior of intact humin was observed for 100-300 mg/L AR27 and increased with the increase of sulfide concentration (1.2-3.0 mM). Much higher stimulating effects were found with the presence of humin pre-reduced by sulfide. Moreover, for sulfide-mediated AR27 reduction, the coexistence of humin (500 mg/L) and humic acid (10-30 mg/L) or Wyoming sodium-montmorillonite (SWy-2, 1-4 g/L) led to better promotion activities than the presence of single component. And synergistic promotion of sulfide-mediated AR27 reduction was observed with coexisting humin and SWy-2 due to enhanced Fe(II) production. These findings extended our understanding of the influence of humin on reductive transformation of pollutants in the environment.

Stimulated Adsorption of Humic Acids on Capped Plasmonic Ag Nanoparticles Investigated by Surface-Enhanced Optical Techniques

The adsorption of humic substances on Ag nanoparticles (AgNPs) is of crucial environmental importance and determines the toxicity of these NPs and the structure of adsorbed organic matter. In this work, the adsorption of two standard soil and leonardite International Humic Substances Society humic acids was studied on AgNPs of different sizes, shapes (spherical and star-like), and interfacial chemical compositions. Surface-enhanced optical (Raman and fluorescence) spectroscopies were used to follow the specific chemical groups involved in this adsorption. By means of the latter optical techniques, information regarding the binding mechanism and the macromolecular aggregation can be deduced. The influence of the surface chemical composition induced by the different functionalizations of the interfaces of these NPs is highly important regarding the chemical interactions of these complex organic macromolecules. The surface functionalization with positively charged alkyl diamines led to a large increase in the adsorption as well as a strong structural rearrangement of the macromolecule once adsorbed onto the surface.

Shilajit (Mumie): Current Status of Biochemical, Therapeutic and Clinical Advances

Methods:

Scientific literature and ethnopharmacological information were compiled from the published peer-reviewed articles, unpublished materials, thesis, books, patent databases, clinical trial registries and from the websites of research councils of traditional medicine. The scientific databases, thesis repositories and books databases were searched with keywords Shilajit, mumie, mumijo, salajeet, asphaltum, fulvic acid, dibenzo-alpha-pyrones etc.

Results:

Scientifically validated research and ancient texts suggest multifaceted benefits of Shilajit. It is endowed with anti-stress, memory and energy enhancing, antioxidant, anti-inflammatory, antidiabetic, spermatogenic, neuroprotective, antiulcer and wound healing activities. These pharmacological effects are mainly attributed to the presence of humic acid, fulvic acid, dibenzo-&#945;-pyrones, dibenzo- &#945;-pyrones chromoproteins and trace elements.

Conclusion:

This review summarizes the traditional importance of Shilajit for the treatment and prevention of several acute and chronic diseases and health ailments. Despite numerous health claims, there are still major gaps in our understanding of its mechanism of action, variability in efficacy and toxicity profile. Therefore, a coordinated interdisciplinary approach is needed to establish the underlying mechanisms of action, comprehensive toxicological profile, pharmacokinetics parameters and effects on different organ systems. Regulatory and governmental impetus to basic and clinical research, safety testing and formulations quality control is warranted.

Humic Substances Extracted by Alkali Are Invalid Proxies for the Dynamics and Functions of Organic Matter in Terrestrial and Aquatic Ecosystems

The conceptual rigor of using organic materials extracted from soil by alkali, called , as proxies for soil organic matter has been questioned for almost 180 years. However, the humic substances paradigm, i.e., the understanding that alkali-extracted humic substances are newly synthesized materials with unique properties that are distinct from non-humic organic matter, continues to be propagated throughout the literature. Here, we revisit the mechanistic background of the extraction process to show that alkaline extraction is unable to discriminate for the chemical history of a compound. For this reason, alkaline extraction cannot distinguish between (i) materials that have undergone secondary synthesis or humification ("humic" substances), and (ii) materials that are decorated with ionizable functional groups for other reasons, such as oxidative depolymerization ("non-humic" substances). While this mechanistic consideration alone renders invalid a distinction between humic substances and non-humic substances based on alkaline extraction, we further show that the evidence available to date does not support the assumption that processes of secondary synthesis create quantitatively significant proportions of "chemically reactive, yet recalcitrant" materials in natural environments. Any definition of humic substances that invokes both alkaline extraction and secondary synthesis is thus flawed on at least two accounts: (i) alkaline extraction is unable to achieve its purpose of separating humic from non-humic substances, and (ii) the assertion that the extracted materials have unique molecular properties as a consequence of secondary synthesis cannot be proven because alkaline extraction cannot separate materials created by secondary synthesis from other, ionizable organic compounds. Finally, we point out that since the definition of humic substances is tied to the alkaline-extraction procedure, neither the existence of operationally defined humic substances in the environment nor their chemical integrity during the course of alkaline extraction can be independently verified. We conclude that organic materials extracted by alkali require appropriate nomenclature and rigorous definition to merit consideration in teaching, research, and application.

Pathways of mineral-associated soil organic matter formation: Integrating the role of plant carbon source, chemistry, and point of entry

To predict the behavior of the terrestrial carbon cycle, it is critical to understand the source, formation pathway, and chemical composition of soil organic matter (SOM). There is emerging consensus that slow-cycling SOM generally consists of relatively low molecular weight organic carbon substrates that enter the mineral soil as dissolved organic matter and associate with mineral surfaces (referred to as "mineral-associated OM," or MAOM). However, much debate and contradictory evidence persist around: (a) whether the organic C substrates within the MAOM pool primarily originate from aboveground vs. belowground plant sources and (b) whether C substrates directly sorb to mineral surfaces or undergo microbial transformation prior to their incorporation into MAOM. Here, we attempt to reconcile disparate views on the formation of MAOM by proposing a spatially explicit set of processes that link plant C source with MAOM formation pathway. Specifically, because belowground vs. aboveground sources of plant C enter spatially distinct regions of the mineral soil, we propose that fine-scale differences in microbial abundance should determine the probability of substrate-microbe vs. substrate-mineral interaction. Thus, formation of MAOM in areas of high microbial density (e.g., the rhizosphere and other microbial hotspots) should primarily occur through an in vivo microbial turnover pathway and favor C substrates that are first biosynthesized with high microbial carbon-use efficiency prior to incorporation in the MAOM pool. In contrast, in areas of low microbial density (e.g., certain regions of the bulk soil), MAOM formation should primarily occur through the direct sorption of intact or partially oxidized plant compounds to uncolonized mineral surfaces, minimizing the importance of carbon-use efficiency, and favoring C substrates with strong "sorptive affinity." Through this framework, we thus describe how the primacy of biotic vs. abiotic controls on MAOM dynamics is not mutually exclusive, but rather spatially dictated. Such an understanding may be integral to more accurately modeling soil organic matter dynamics across different spatial scales.

Focusing on “the important” through targeted NMR experiments: an example of selective13C–12C bond detection in complex mixtures

Here, a targeted NMR experiment is introduced which selectively detects the formation of¹³C–¹²C bonds in mixtures.

Surfactant properties of humic acids extracted from volcanic soils and their applicability in mineral flotation processes

Surface Tension (ST) of water solutions of humic acids extracted from volcanic ash derived soils (soil humic acids, S-HA), were measured under controlled conditions of pH (13.0), temperature (25 °C) and ionic strength (NaOH 0.1M) to establish the Critical Micellar Concentration (CMC). All S-HA were characterized by elemental analysis, acid-base titration, Transmission Electronic Microscopy (TEM) micrographs, isoelectric point (IEP) and solid state ¹³C-NMR. After that, these humic acids were evaluated as potential biomaterials to be used in mineral flotation processes, where a series of experiments were conducted at different S-HA and molybdenite ratio (from 0.2 to 50 g ton^-1) establishing the IEP of all resultant materials. The use of solid state ¹³C-NMR enabled the following sequence of intensity distribution areas of S-HA to be established: O/N Alkyl>Alkyl C>Aromatic C>Carboxyl. The experimental values of ST and the calculated CMC (ranging from 0.8 to 3.3 g L^-1) revealed that for S-HA no relationship between the abundance groups and their behavior as surfactant materials was observed. In relation with IEP determined for all materials, the highest surface charge, which can be useful for flotation processes, was obtained with 0.2 g of S-HA per ton of molybdenite. Additionally, TEM studies confirm the formation of pseudoaggregates for all the S-HA considered. Finally, the S-HA could be considered as an alternative to chemical products and commercial humic acids materials in mineral flotation processes.

Stability of Ferrihydrite-Humic Acid Coprecipitates under Iron-Reducing Conditions

Recent studies have suggested the potential for release of iron (hydr)oxide-bound organic carbon (OC) during dissimilatory iron oxide reduction (DIR). However, the stability of iron (hydr)oxide-bound OC in the presence of a natural microbial consortium capable of driving both OC metabolism and DIR has not been resolved. Pure ferrihydrite (Fhy) and Fhy-humic acid coprecipitates (Fhy-HA) were inoculated with a small quantity of freshwater sediment and incubated under anoxic conditions in the presence and absence of H₂ or glucose as electron donors for DIR. H₂ promoted DIR led to release of ca. 1 mM dissolved organic carbon (DOC). However, comparable amounts of DOC were released from both pure Fhy and Fhy-HA, similar to DOC levels in mineral-free, inoculum-only controls. These results suggest that the observed DOC release during H₂-promoted DIR originated from OC contained in the inoculum as opposed to the much larger pool (ca. 38 mM) of OC in the Fhy-HA. Thus, DIR preferentially released sorbed OC with low aromaticity (inoculum OC) versus highly aromatic OC (HA) coprecipitated with iron oxide. Our findings provide new insight into the extent and mechanisms by which DIR is likely to influence aqueous/solid-phase OC partitioning in anoxic soils and sediments.

Examining mineral-associated soil organic matter pools through depth in harvested forest soil profiles

Mineral-associated organic matter is associated with a suite of soil minerals that can confer stability, resulting in the potential for long-term storage of carbon (C). Not all interactions impart the same level of protection, however; evidence is suggesting that C in certain mineral pools is dynamic and vulnerable to disturbance in the decades following harvesting. The objective of this research was to describe and characterize organic matter-mineral interactions through depth in horizons of soils of contrasting stand age. Sequential selective dissolutions representing increasingly stable mineral-associated organic matter pools from water soluble minerals (deionized water), organo-metal complexes (Na-pyrophosphate), poorly-crystalline minerals (HCl hydroxylamine), and crystalline secondary minerals (Na-dithionite HCl)) were carried out for Ae, Bf and BC horizons sampled from a Young and Mature forest site (35 and 110 years post-harvest) in Mooseland, Nova Scotia, Canada. Sequential selective dissolution extracts were analyzed for C, δ13C, iron (Fe) and aluminum (Al). Organo-metal complexes (OMC) were the largest mineral-associated OM pool in all horizons. This pool dominated the C distribution in B horizons (~60-70% of Bf bulk C), with a minor contribution from poorly-crystalline (PCrys), crystalline (Crys) minerals and water soluble (WS) associations. C in OMC and PCrys pools explained the variation in bulk C in horizons through depth at both sites. Twice as much C in OMC pools was measured at the Mature site compared to the Young site in the Bf horizons, supported by higher C:(Fe+Al) ratios. Isotopic analysis indicated that this extraction procedure isolated distinct mineral-associated OM pools. δ13C signatures of pyrophosphate-extracted OMC pools ranged from -27‰ to -28‰, similar to δ13C of bulk C and to plant-derived humic acids and associated biomass. The water soluble phase (mean δ13C = -29 ‰) was up to 2 ‰ more depleted, whereas the δ13C of Crys pools were more enriched in 13C (-13‰ to -16 ‰) compared to bulk soil. The results from this study suggest that association with minerals does not necessarily confer stability: organo-metal pools dominate in podzol horizons through depth, and contribute most to C storage, but are potentially susceptible to destabilization following the physical changes resulting from forest harvesting disturbance.

Sub-micron level investigation reveals the inaccessibility of stabilized carbon in soil microaggregates

Direct evidence-based approaches are vital to evaluating newly proposed theories on the persistence of soil organic carbon and establishing the contributions of abiotic and biotic controls. Our primary goal was to directly identify the mechanisms of organic carbon stabilization in native-state, free soil microaggregates without disrupting the aggregate microstructure using scanning transmission x-ray microscopy coupled with near edge x-ray absorption fine structure spectroscopy (STXM-NEXAFS). The influence of soil management practices on microaggregate associated-carbon was also assessed. Free, stable soil microaggregates were collected from a tropical agro-ecosystem in Cruz Alta, Brazil. The long-term experimental plots (>25 years) comparing two tillage systems: no-till and till with a complex crop rotation. Based on simultaneously collected multi-elemental associations and speciation, STXM-NEXAFS successfully provided submicron level information on organo-mineral associations. Simple organic carbon sources were found preserved within microaggregates; some still possessing original morphology, suggesting that their stabilization was not entirely governed by the substrate chemistry. Bulk analysis showed higher and younger organic carbon in microaggregates from no-till systems than tilled systems. These results provide direct submicron level evidence that the surrounding environment is involved in stabilizing organic carbon, thus favoring newly proposed concepts on the persistence of soil organic carbon.

Using chromate to investigate the impact of mineral-organic contact time on the surface reactivity of goethite

Chromate was used as a chemical probe to investigate the impact of mineral-organic contact time on the surface reactivity of two different sizes of goethite particles. A series of goethite-chromate sorption batch reactions were conducted in the presence and absence of Suwannee River humic acid (HA) and natural organic matter (NOM) using nano- and micro-scale goethite particles. In experiments with added organics the amount of time allowed for goethite-organic matter interaction (i.e. contact time) was varied from less than 1 minute, up to 24 hours prior to the addition of chromate. Results indicated that nano- and micro-scale goethite in the absence of organics sorbed nearly identical amounts of chromate on a per mass basis, despite the greater surface area of the smaller particles. Results also indicated that the presence of ∼10 mg L-1 of HA and a contact time of less than 1 minute reduced the amount of chromate sorbed by both nano- and micro-scale goethite. Increasing the contact time resulted in greater decreases in chromate sorption. Experiments using NOM produced similar results. While chromate sorption was most rapid during the first hour of the experiments, goethite particles continued to sorb additional chromate over a period of up to 7 days. Additionally, a noticeable impact on chromate sorption due to increased contact time was present over that time period.

Humic substances, their microbial interactions and effects on biological transformations of organic pollutants in water and soil: A review

Depicted as large polymers by the traditional model, humic substances (HS) tend to be considered resistant to biodegradation. However, HS should be regarded as supramolecular associations of rather small molecules. There is evidence that they can be degraded not only by aerobic but also by anaerobic bacteria. HS presence alters biological transformations of organic pollutants in water and soil. HS, including humin, have a great potential for an application in aerobic and anaerobic wastewater treatment as well as in bioremediation. Black carbon materials, including char (biochar) and activated carbon (AC), long recognized effective sorbents, have been recently discovered to act as effective redox mediators (RM), which may significantly accelerate degradation of organic pollutants in a way similar to HS. Humic-like coating on the biochar surface has been identified. Explanation of mechanisms and possibility of applications of black carbon materials have only started to be explored. Results of many original and review papers, presented and discussed in this article, show an enormous potential for an interesting, multidisciplinary research as well as for a development of new, green technologies for biological wastewater treatment and bioremediation. Future research areas have been suggested.

Microbial Interactions With Dissolved Organic Matter Drive Carbon Dynamics and Community Succession

Knowledge of dynamic interactions between natural organic matter (NOM) and microbial communities is critical not only to delineate the routes of NOM degradation/transformation and carbon (C) fluxes, but also to understand microbial community evolution and succession in ecosystems. Yet, these processes in subsurface environments are usually studied independently, and a comprehensive view has been elusive thus far. In this study, we fed sediment-derived dissolved organic matter (DOM) to groundwater microbes and continually analyzed microbial transformation of DOM over a 50-day incubation. To document fine-scale changes in DOM chemistry, we applied high-resolution Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) and soft X-ray absorption spectroscopy (sXAS). We also monitored the trajectory of microbial biomass, community structure and activity over this time period. Together, these analyses provided an unprecedented comprehensive view of interactions between sediment-derived DOM and indigenous subsurface groundwater microbes. Microbial decomposition of labile C in DOM was immediately evident from biomass increase and total organic carbon (TOC) decrease. The change of microbial composition was closely related to DOM turnover: microbial community in early stages of incubation was influenced by relatively labile tannin- and protein-like compounds; while in later stages the community composition evolved to be most correlated with less labile lipid- and lignin-like compounds. These changes in microbial community structure and function, coupled with the contribution of microbial products to DOM pool affected the further transformation of DOM, culminating in stark changes to DOM composition over time. Our study demonstrates a distinct response of microbial communities to biotransformation of DOM, which improves our understanding of coupled interactions between sediment-derived DOM, microbial processes, and community structure in subsurface groundwater.

Strontium adsorption and desorption in wetlands: Role of organic matter functional groups and environmental implications

Strontium (Sr) is a chemical element that is often used as a tracer in hydrogeochemical studies, and is ubiquitously distributed as a radioactive contaminant in nuclear sites in the form of strontium-90 (Sr-90). At the interface between groundwater and surface water, wetlands possess unique hydrogeochemical properties whose impact on Sr transport has not been investigated thoroughly. In this study, the adsorption and desorption of Sr was investigated on six natural wetland substrates and two mixes of exogenous media and wetland sediment: winter and summer wetland sediments, decayed cattails, wood, leaf litter, moss, bone charcoal, and clinoptilolite. The composition of the organic matter was characterized using carbon-13, solid phase Nuclear Magnetic Resonance analysis. The range of the substrates' adsorption coefficients obtained could be explained by factors indicative of proteins in the organic matter, which were shown to support strong and poorly reversible Sr adsorption. In contrast, the proportion of carbohydrates and lignin were found to be indicative of lower adsorption coefficients and higher desorption. The implications of these results for Sr pollution remediation in wetlands are discussed.