Semiconductive and magnetic one-dimensional coordination polymers of Cu(II) with modified nucleobases

Structural and Theoretical Study of Copper(II)-5-fluoro Uracil Acetate Coordination Compounds: Single-Crystal to Single-Crystal Transformation as Possible Humidity Sensor

This paper describes the synthesis and characterization of seven different copper(II) coordination compounds, as well as the formation of a protonated ligand involving all compounds from the same reaction. Their synthesis required hydrothermal conditions, causing the partial in situ transformation of 5-fluoro uracil-1-acetic acid (5-FUA) into an oxalate ion (ox), as well as the protonation of the 4,4'-bipyridine (bipy) ligand through a catalytic process resulting from the presence of Cu(II) within the reaction. These initial conditions allowed obtaining the new coordination compounds [Cu₂(5-FUA)₂(ox)(bipy)]_n·2n H₂O (CP2), [Cu(5-FUA)₂(H₂O)(bipy)]_n·2n H₂O (CP3), as well as the ionic pair [(H₂bipy)⁺² 2NO₃^-] (1). The mother liquor evolved rapidly at room temperature and atmospheric pressure, due to the change in concentration of the initial reagents and the presence of the new chemical species generated in the reaction process, yielding CPs [Cu(5-FUA)₂(bipy)]_n·3.5n H₂O, [Cu₃(ox)₃(bipy)₄]_n and [Cu(ox)(bipy)]_n. The molecular compound [Cu(5-FUA)₂(H₂O)₄]·4H₂O (more thermodynamically stable) ended up in the mother liquor after filtration at longer reaction times at 25 °C and 1 atm., cohabiting in the medium with the other crystalline solids in different proportions. In addition, the evaporation of H₂O caused the single-crystal to single-crystal transformation (SCSC) of [Cu(5-FUA)₂(H₂O)(bipy)]_n·2n H₂O (CP3) into [Cu(5-FUA)₂(bipy)]_n·2n H₂O (CP4). A theoretical study was performed to analyze the thermodynamic stability of the phases. The observed SCSC transformation also involved a perceptible color change, highlighting this compound as a possible water sensor.

A Nanostructured Cu(II) Coordination Polymer Based on Alanine as a Trifunctional Mimic Enzyme and Efficient Composite in the Detection of Sphingobacteria

This research raises the potential use of coordination polymers as new useful materials in two essential research fields, allowing the obtaining of a new multiartificial enzyme with the capacity to inhibit the growth of bacteria resistance. The fine selection of the ligands allows the design of a new 2D coordination polymer (CP), with the formula [Cu2(IBA)2(OH2)4]n·6nH2O, by the combination of Cu (II) as the metal center with a pseudoamino acid (H2IBA = isophthaloyl bis β-alanine). Quantitative total X-ray fluorescence (TXRF) analyses show that the obtained CP can gradually release Cu (II) ions. Additionally, this CP can be nanoprocessed and transformed into a metal-organic gel (MOG) by using different Cu (II) salt concentrations and the application of ultrasounds. Considering its nanometric dimensions, the slow Cu (II) release and its simple processability, its performance as an artificial enzyme, and its antibacterial ability were explored. The results obtained show the first nanocoordination polymer acting as an artificial multienzyme (peroxidase, catalase, and superoxodismutase) exhibiting antibacterial activity in the presence of hydrogen peroxide, with selective behavior for three bacterium strains (S. spiritovirum, A. faecales, and B. cereus). Indeed, this CP shows a more robust inhibition capacity for Sphingobacterium. Going beyond that, as there are no comfortable and practically clinical tests capable of detecting the presence of Sphingobacteria, the compound can be easily embedded to form moldable gelatin that will facilitate the handling and low-cost commercial kits.

Surface-enhanced Raman spectroscopy and density functional theory study of thymine-1-acetic acid interaction with silver nanoparticles

Thymine-1-acetic acid (TAA) is a modified nucleobase often used to add thymine functionality to materials. This study reports the Raman band assignments for TAA by comparing its experimental and density functional theory (DFT) simulated Raman spectra. Further comparison of experimental surface-enhanced Raman spectroscopy (SERS) of TAA on silver nanoparticles (Ag NPs) with simulated spectra of various complexes of xAg+ (x = 1, 2, or 3) and TAA reveals its likely adsorption orientation on the Ag NPs. This is one of the few studies that has achieved reasonably accurate simulation of SERS by employing multiple unconnected Ag+ ions, which could represent a compromise between a single atom or ion on one hand and a computationally expensive cluster on the other.

Rational Design of Copper(II)-Uracil Nanoprocessed Coordination Polymers to Improve Their Cytotoxic Activity in Biological Media

This work is focused on the rational structural design of two isostructural Cu(II) nano-coordination polymers (NCPs) with uracil-1-acetic acid (UAcOH) (CP1n) and 5-fluorouracil-1-acetic acid (CP2n). Suitable single crystals for X-ray diffraction studies of CP1 and CP2 were prepared under hydrothermal conditions, enabling their structural determination as 1D-CP ladder-like polymeric structures. The control of the synthetic parameters allows their processability into water colloids based on nanoplates (CP1n and CP2n). These NCPs are stable in water at physiological pHs for long periods. However, interestingly, CP1n is chemically altered in culture media. These transformations provoke the partial release of its building blocks and the formation of new species, such as [Cu(UAcO)₂(H₂O)₄]·2H₂O (Cu(II)-complex), and species corresponding to the partial reduction of the Cu(II) centers. The cytotoxic studies of CP1n versus human pancreatic adenocarcinoma and human uveal melanoma cells show that CP1n produces a decrease in the cell viability, while their UAcOH and Cu(II)-complex are not cytotoxic under similar conditions. The copper reduction species detected in the hydrolysis of CP1n are closely related to the formation of the reactive oxygen species (ROS) detected in the cytotoxic studies. These results prompted us to prepare CP2n that was designed to improve the cytotoxicity by the substitution of UAcO by 5-FUAcO, taking into account the anticancer activity of the 5-fluorouracil moiety. The new CP2n has a similar behavior to CP1n both in water and in biological media. However, its subtle structural differences are vital in improving its cytotoxic activity. Indeed, the release during the hydrolysis of species containing the 5-fluorouracil moiety provokes a remarkable increase in cellular toxicity and a significant increase in ROS species formation.

Electrically conductive 1D coordination polymers: design strategies and controlling factors

Due to the easy functionality and structural diversity of coordination polymers (CPs) coupled with superior thermal stability, many researchers have been prompted to explore the opportunity of introducing these hybrid materials as active components in various electronic devices, such as light emitting diodes (LED), solar cells, field effect transistors (FET), and Schottky barrier diodes (SBD). Therefore, the judicious selection of the structural components of CPs is directly related to their structure-property relationship and applications. One-dimensional (1D) CPs have recently emerged as excellent electrical conductors and are gaining enormous attention owing to their simple chain-like coordination arrays. In this article, we review the rational design strategies for synthesising 1D CPs and also point out the structural factors that affect the charge transport properties as well as the electrical conductivity of these materials.

Multifunctional coordination polymers based on copper(i) and mercaptonicotinic ligands: synthesis, and structural, optical and electrical characterization

Three new coordination polymers (CPs) named [Cu(6mna)]n (CP1), [CuCl(H6mna)(H2O)0.33]n (CP2), and {[(CuI)2H2dtdn].MeCN}n (CP3), (H6mna = 6-mercaptonicotinic acid, and H2dtdn = 6,6'-dithiodinicotinic acid) have been synthesized and their structures determined by single-crystal X-ray diffraction. Complexes 1 and 3 are 2D-CPs while complex 2 is a 1D-CP. The optical properties of these complexes have been evaluated in the solid state, at room temperature and at 77 K, and compared with those of the starting ligands. The electrical conductivity of CPs 1-3 has been evaluated and their thermal stabilities have been studied. CP2 shows an interesting crystal arrangement, where the connection between the ligand and the copper forms a channel-like structure characterized by an intrinsic disorder. Crystal data collected at low temperatures for this complex revealed minor structural changes in the CuCu distances and Cu-S-Cu angles along the chain, excluding phase transition. In CP1, the N and S atoms are involved in metal coordination bonds giving rise to a 2D coordination polymer. In CP3, the Cu-I bonds compose double ladder-like structures, bridged by H2dtdn ligands. The electrical conductivities of CPs 1-3 suggest their semiconductive behavior.

A bioinspired metal-organic approach to cross-linked functional 3D nanofibrous hydro- and aero-gels with effective mixture separation of nucleobases by molecular recognition

The direct reaction between Cu(CH3COO)2 and uracil-1-acetic acid in water gives rise to the formation of a hydrogel consisting of entangled nanometric ribbons of a crystalline antiferromagnetic 1D Cu(ii) coordination polymer (CP) decorated with biocompatible uracil nucleobases. This hydrogel is the precursor for the preparation of a meso/macroporous ultralight aerogel that shows a remarkable Young's modulus. As a proof-of-concept of the molecular recognition capability of the terminal uracil moieties anchored at Cu(ii) CP chains, this material has been tested as the selective stationary phase for the separation of nucleobase derivatives in HPLC columns.

Synthesis and surface characterization of new triplex polymer of Ag(I) and mixture nucleosides: cytidine and 8-bromoguanosine

In this work one-dimensional (1D) triplex polymer of silver (I): mixture nucleosides of cytidine and 8-bromoguanosine was synthesised. The polymer showed high stability due to the presence Ag(I) ions in the structure of the polymer in addition to the stability that produces from the effect of Hoogsteen hydrogen bonding in the triplex CGC. Atomic Force Microscopy (AFM) and transmission electron microscopy (TEM) were used to investigate the morphology of the polymer. The AFM images revealed formation of nanofibres extending many microns in length with height in the range of 2-3 nm. Statistical analyses carried out to analyse the AFM images to determine the height of the loops that formed in the polymer. The data displayed that the height value was in the range between 10 nm to 15 nm. The data of TEM images were consistent with the data of AFM images by displaying a very long fibre. Gwyddion software program was used to investigate surface parameters (roughness and waviness), diameter (size distribution), and probability density of the fibre. The data showed that the diameter of the fibre was ∼0.4 nm.

Synthesis and Preliminary Evaluation of Biological Activity of Glycoconjugates Analogues of Acyclic Uridine Derivatives

Herein we present the methodology for obtaining glycosyltransferase inhibitors, analogues of natural enzyme substrates of donor-type: UDP-glucose and UDP-galactose. The synthesis concerned glycoconjugates, nucleoside analogues containing an acyclic ribose mimetic linked to a uracil moiety in their structure. The biological activity of the synthesised compounds was determined on the basis of their ability to inhibit the model enzyme action of β-1,4-galactosyltransferase from bovine milk. The obtained results allowed to expand and supplement the existing library of synthetic compounds that are able to regulate the biological activity of enzymes from the GT class.

Supramolecular Interactions Modulating Electrical Conductivity and Nanoprocessing of Copper-Iodine Double-Chain Coordination Polymers

Two coordination polymers (CPs), based on Cu(I)-I double zig-zag chains bearing isonicotinic acid or 3-chloroisonicotinic acid as terminal ligands with molecular recognition capabilities, have been synthesized and fully characterized. Both compounds present extended networks with supramolecular interactions directed by the formation of H-bonds between the complementary carboxylic groups, giving supramolecular sheets. The chloro substituent allows establishing additional Cl···Cl supramolecular interactions that reinforce the stability of the supramolecular sheets. These CPs are semiconductor materials; however, the presence of chlorine produces slight changes in the I-Cu-I chains, generating a worse overlap in the Cu-I orbitals, thus determining a decrease in its electrical conductivity value. These experimental results have also been corroborated by theoretical calculations using the study of the morphology of the density of states and 3D orbital isodensities, which determine that conductivity is mostly produced through the Cu-I skeleton and is less efficient in the case of the chloro derivative compound. A fast and efficient bottom-up approach based on the self-assembly of the initial building blocks and the low solutibility of these CPs has proved very useful for the production of nanostructures.

Construction of a bicontinuous donor-acceptor hybrid material at the molecular level by inserting inorganic nanowires into porous MOFs

Herein, we report an unprecedented hybrid structure of electron-rich iodoplumbate nanowires precisely inserted into the periodic pores of electron-deficient pyridinium metal-organic frameworks (MOFs). To the best of our knowledge, this is the first example of semiconductive MOFs in situ loaded with inorganic semiconductive nanowires via a simple self-assembly method. Due to the dissimilar semiconductivities between the host and guest components, this hybrid also represents the first bicontinuous donor-acceptor hybrid at the molecular level based on host-guest interactions.

Copper(II) complex with 6-methylpyridine-2-carboxyclic acid: Experimental and computational study on the XRD, FT-IR and UV-Vis spectra, refractive index, band gap and NLO parameters

Crystal structure of the synthesized copper(II) complex with 6-methylpyridine-2-carboxylic acid, [Cu(6-Mepic)₂·H₂O]·H₂O, was determined by XRD, FT-IR and UV-Vis spectroscopic techniques. Furthermore, the geometry optimization, harmonic vibration frequencies for the Cu(II) complex were carried out by using Density Functional Theory calculations with HSEh1PBE/6-311G(d,p)/LanL2DZ level. Electronic absorption wavelengths were obtained by using TD-DFT/HSEh1PBE/6-311G(d,p)/LanL2DZ level with CPCM model and major contributions were determined via Swizard/Chemissian program. Additionally, the refractive index, linear optical (LO) and non-nonlinear optical (NLO) parameters of the Cu(II) complex were calculated at HSEh1PBE/6-311G(d,p) level. The experimental and computed small energy gap shows the charge transfer in the Cu(II) complex. Finally, the hyperconjugative interactions and intramolecular charge transfer (ICT) were studied by performing of natural bond orbital (NBO) analysis.

Fast and efficient direct formation of size-controlled nanostructures of coordination polymers based on copper(i)–iodine bearing functional pyridine terminal ligands

We report on the direct formation of 1D nanostructures of two coordination polymers based on copper(i)–iodine double chains decorated with ethyl isonicotinate or 2-amino-5-nitropyridine as terminal ligands.

Crystal structures of N6-modified-aminoacid/peptide nucleobase analogs: hybrid adenine–glycine and adenine–glycylglycine molecules

Anion–π interactions in crystal structures of N⁶-modified-aminoacid and dipeptide adenine analogs are investigated using X-ray crystallography and DFT calculations.

Direct Formation of Sub-Micron and Nanoparticles of a Bioinspired Coordination Polymer Based on Copper with Adenine

We report on the use of different reaction conditions, e.g., temperature, time, and/or concentration of reactants, to gain control over the particle formation of a bioinspired coordination polymer based on copper(II) and adenine, allowing homogeneous particle production from micro- to submicro-, and up to nano-size. Additionally, studies on this reaction carried out in the presence of different surfactants gives rise to the control of the particle size due to the modulation of the electrostatic interactions. Stability of the water suspensions obtained within the time and pH has been evaluated. We have also studied that there is no significant effect of the size reduction in the magnetic properties of the Cu(II)-adenine coordination polymer.

Semiconducting Coordination Polymers Based on the Predesigned Ternary Te-Fe-Cu Carbonyl Cluster and Conjugation-Interrupted Dipyridyl Linkers

A series of semiconducting cluster-incorporated Cu-based coordination polymers, namely, 1D zigzag polymers [{TeFe₃ (CO)₉ Cu₂ }(L)]_n (L=1,2-bis(4-pyridyl)ethane (bpea), 1; L=1,2-bis(4-pyridyl)ethylene (bpee), 5), 2D honeycomb-like polymers [{TeFe₃ (CO)₉ Cu}Cu(L)_2.5 ]_n (L=bpea, 2; L=bpee, 6), and 2D wave-like cation-anion polymer [{Cu₂ (L)₄ }({TeFe₃ (CO)₉ Cu}₂ (L))]_n (L=1,3-bis(4-pyridyl)propane (bpp), 4), as well as the macrocycle [{TeFe₃ (CO)₉ Cu₂ }₂ (bpp)₂ ] (3) have been quantitatively synthesized via the liquid-assisted grinding from the pre-designed cluster [TeFe₃ (CO)₉ Cu₂ (MeCN)₂ ] with conjugated or conjugation-interrupted dipyridyl linkers. Notably, the most conjugation-interrupted bpp-bridged polymer 4 exhibited extraordinary semiconducting characteristics with an ultra-narrow bandgap of 1.43 eV and a DC conductivity of 1.5×10^-2 Ω^-1  cm^-1 , which violates our knowledge, mainly attributed to the through-space electron transport via non-classical C-H⋅⋅⋅O(carbonyl) hydrogen bonds and aromatic C-H⋅⋅⋅π interactions. The incorporated Te-Fe-CO anions can not only provide numerous possibilities for secondary interactions within these Cu-based polymers but also serve as a redox-active coordination ligand to promote their conductivities. The intriguing structure-property relationships were studied by X-ray and DFT analyses and further demonstrated by significant change in the oxidation state of Cu atoms by XPS and Cu K-edge XANES.

N9 substituent mediated structural tuning of copper–purine complexes: chelate effect and thin film studies

Six Cu(ii) complexes of strategically designed derivatives of 6-chloropurine, one of which has been explored as a thin film precursor on quartz and Si(111) surfaces by using chemical vapor deposition (CVD).

Structural diversity of five new bitriazole-based complexes: luminescence, sorption, and magnetic properties

Employing a new bitriazole ligand, five complexes were assembled that display diverse structures, selective CO₂/CH₄ adsorption, luminescent sensing, and antiferromagnetic properties.

Preparation, crystal structure, and magnetic properties of a copper hydroxy salt with diamond chain magnetic network

The copper hydroxy salt, α-[Cu₃(OH)₂(CH₃CO₂)₂(H₂O)₄](C₆H₅SO₃)₂, exhibited a distorted diamond chain magnetic network and no magnetic order down to 2 K.