1
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Ponnapalli KK, Ho YC, Tseng MC, Sekhar Vasamsetti BV, Shie JJ. One-Pot Glycosylation Strategy Assisted by Ion Mobility-Mass Spectrometry Analysis toward the Synthesis of N-Linked Oligosaccharides. J Org Chem 2022; 87:5339-5357. [PMID: 35377640 DOI: 10.1021/acs.joc.2c00184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
N-Glycans are major constituents of several cellular glycoproteins. One-pot strategies for the synthesis of N-glycans are crucial for the rapid generation of pure samples to determine their biological functions. Herein, we describe a double one-pot strategy for the synthesis of N-glycans assisted by an IM-MS analysis approach for rapid screening of optimized glycosylation reaction conditions. This research includes triflate-mediated direct β-mannosylation and tandem glycosylation in a one-pot strategy for the synthesis of the challenging N-linked trisaccharide core β-5. Furthermore, a one-pot sequential glycosylation of the N-linked trisaccharide core 7 furnishes diverse high-mannose type N-glycans with excellent stereo- and regioselectivities. In particular, ion mobility-mass spectrometry-based quantitative analysis is applied to identify the stereo- and regioselective outcomes of the crude reaction mixtures to develop a highly efficient one-pot protocol.
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Affiliation(s)
| | - Yi-Chi Ho
- Institute of Chemistry, Academia Sinica, Taipei 11529, Taiwan
| | - Mei-Chun Tseng
- Institute of Chemistry, Academia Sinica, Taipei 11529, Taiwan
| | | | - Jiun-Jie Shie
- Institute of Chemistry, Academia Sinica, Taipei 11529, Taiwan
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2
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Zhong X, Zhou S, Ao J, Guo A, Xiao Q, Huang Y, Zhu W, Cai H, Ishiwata A, Ito Y, Liu XW, Ding F. Zinc(II) Iodide-Directed β-Mannosylation: Reaction Selectivity, Mode, and Application. J Org Chem 2021; 86:16901-16915. [PMID: 34797079 DOI: 10.1021/acs.joc.1c02091] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A direct, efficient, and versatile glycosylation methodology promises the systematic synthesis of oligosaccharides and glycoconjugates in a streamlined fashion like the synthesis of medium to long-chain nucleotides and peptides. The development of a generally applicable approach for the construction of 1,2-cis-glycosidic bond with controlled stereoselectivity remains a major challenge, especially for the synthesis of β-mannosides. Here, we report a direct mannosylation strategy mediated by ZnI2, a mild Lewis acid, for the highly stereoselective construction of 1,2-cis-β linkages employing easily accessible 4,6-O-tethered mannosyl trichloroacetimidate donors. The versatility and effectiveness of this strategy were demonstrated with successful β-mannosylation of a wide variety of alcohol acceptors, including complex natural products, amino acids, and glycosides. Through iteratively performing ZnI2-mediated mannosylation with the chitobiosyl azide acceptor followed by site-selective deprotection of the mannosylation product, the novel methodology enables the modular synthesis of the key intermediate trisaccharide with Man-β-(1 → 4)-GlcNAc-β-(1 → 4)-GlcNAc linkage for N-glycan synthesis. Theoretical investigations with density functional theory calculations delved into the mechanistic details of this β-selective mannosylation and elucidated two zinc cations' essential roles as the activating agent of the donor and the principal mediator of the cis-directing intermolecular interaction.
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Affiliation(s)
- Xuemei Zhong
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Siai Zhou
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Jiaming Ao
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Aoxin Guo
- Division of Chemistry and Biological Chemistry, Nanyang Technological University, Singapore 637371, Singapore
| | - Qian Xiao
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Yan Huang
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Wanmeng Zhu
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Hui Cai
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
| | - Akihiro Ishiwata
- RIKEN Cluster for Pioneering Research, Wako, Saitama 3510198, Japan
| | - Yukishige Ito
- RIKEN Cluster for Pioneering Research, Wako, Saitama 3510198, Japan.,Graduate School of Science, Osaka University, Toyonaka, Osaka 5600043, Japan
| | - Xue-Wei Liu
- Division of Chemistry and Biological Chemistry, Nanyang Technological University, Singapore 637371, Singapore
| | - Feiqing Ding
- School of Pharmaceutical Sciences (Shenzhen), Sun Yat-sen University, Shenzhen 518107, China
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3
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Zeng C, Sun B, Cao X, Zhu H, Oluwadahunsi OM, Liu D, Zhu H, Zhang J, Zhang Q, Zhang G, Gibbons CA, Liu Y, Zhou J, Wang PG. Chemical Synthesis of Homogeneous Human E-Cadherin N-Linked Glycopeptides: Stereoselective Convergent Glycosylation and Chemoselective Solid-Phase Aspartylation. Org Lett 2020; 22:8349-8353. [PMID: 33045166 DOI: 10.1021/acs.orglett.0c02971] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
We report herein an efficient chemical synthesis of homogeneous human E-cadherin N-linked glycopeptides consisting of a heptapeptide sequence adjacent to the Asn-633 N-glycosylation site with representative N-glycan structures, including a conserved trisaccharide, a core-fucosylated tetrasaccharide, and a complex-type biantennary octasaccharide. The key steps are a chemoselective on-resin aspartylation using a pseudoproline-containing peptide and stereoselective glycosylation using glycosyl fluororide as a donor. This synthetic strategy demonstrates potential utility in accessing a wide range of homogeneous N-linked glycopeptides for the examination of their biological function.
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Affiliation(s)
- Chen Zeng
- School of Medicine, Southern University of Science and Technology, Shenzhen 518055, China
| | - Bin Sun
- School of Medicine, Southern University of Science and Technology, Shenzhen 518055, China
| | - Xuefeng Cao
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - Hailiang Zhu
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | | | - Ding Liu
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - He Zhu
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - Jiabin Zhang
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - Qing Zhang
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - Gaolan Zhang
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | | | - Yunpeng Liu
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
| | - Jun Zhou
- Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States.,R&D Headquarters, WuXi AppTec, Shanghai 200131, China
| | - Peng George Wang
- School of Medicine, Southern University of Science and Technology, Shenzhen 518055, China.,Department of Chemistry, Georgia State University, Atlanta, Georgia 30303, United States
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4
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Roy R, Ang E, Komatsu E, Domalaon R, Bosseboeuf A, Harb J, Hermouet S, Krokhin O, Schweizer F, Perreault H. Absolute Quantitation of Glycoforms of Two Human IgG Subclasses Using Synthetic Fc Peptides and Glycopeptides. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2018; 29:1086-1098. [PMID: 29796736 DOI: 10.1007/s13361-018-1900-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Revised: 12/21/2017] [Accepted: 12/21/2017] [Indexed: 06/08/2023]
Abstract
Immunoglobulins, such as immunoglobulin G (IgG), are of prime importance in the immune system. Polyclonal human IgG comprises four subclasses, of which IgG1 and IgG2 are the most abundant in healthy individuals. In an effort to develop an absolute MALDI-ToF-MS quantitative method for these subclasses and their Fc N-glycoforms, (glyco)peptides were synthesized using a solid-phase approach and used as internal standards. Tryptic digest glycopeptides from monoclonal IgG1 and IgG2 samples were first quantified using EEQYN(GlcNAc)STYR and EEQFN(GlcNAc)STFR standards, respectively. For IgG1, a similar glycopeptide where tyrosine (Y) was isotopically labelled was used to quantify monoclonal IgG1 that had been treated with the enzyme Endo-F2, i.e., yielding tryptic glycopeptide EEQYN(GlcNAc)STYR. The next step was to quantify single subclasses within polyclonal human IgG samples. Although ion abundances in the MALDI spectra often showed higher signals for IgG2 than IgG1, depending on the spotting solvent used, determination of amounts using the newly developed quantitative method allowed to obtain accurate concentrations where IgG1 species were predominant. It was observed that simultaneous analysis of IgG1 and IgG2 yielded non-quantitative results and that more success was obtained when subclasses were quantified one by one. More experiments served to assess the respective extraction and ionization efficiencies of EEQYNSTYR/EEQFNSTFR and EEQYN(GlcNAc)STYR/EEQFN(GlcNAc)STFR mixtures under different solvent and concentration conditions. Graphical Abstract ᅟ.
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Affiliation(s)
- Rini Roy
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
| | - Evelyn Ang
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
- Manitoba Centre for Proteomics and Systems Biology, University of Manitoba, Winnipeg, MB, R3E 3P4, Canada
| | - Emy Komatsu
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
| | - Ronald Domalaon
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
| | - Adrien Bosseboeuf
- CRCINA, Inserm U1232, Institut de Recherche en Santé 2, Université de Nantes, Nantes, France
| | - Jean Harb
- Centre de Recherche en Transplantation et Immunologie UMR1064, Inserm, Université de Nantes, Nantes, France
| | - Sylvie Hermouet
- CRCINA, Inserm U1232, Institut de Recherche en Santé 2, Université de Nantes, Nantes, France
| | - Oleg Krokhin
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
- Manitoba Centre for Proteomics and Systems Biology, University of Manitoba, Winnipeg, MB, R3E 3P4, Canada
| | - Frank Schweizer
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada
| | - Hélène Perreault
- Department of Chemistry, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
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5
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Zakharova AN, Awan SI, Nami F, Gotfredsen CH, Madsen R, Clausen MH. Synthesis of Two Tetrasaccharide Pentenyl Glycosides Related to the Pectic Rhamnogalacturonan I Polysaccharide. Molecules 2018; 23:molecules23020327. [PMID: 29401687 PMCID: PMC6017268 DOI: 10.3390/molecules23020327] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 01/29/2018] [Accepted: 02/01/2018] [Indexed: 11/29/2022] Open
Abstract
The synthesis of two protected tetrasaccharide pentenyl glycosides with diarabinan and digalactan branching related to the pectic polysaccharide rhamnogalacturonan I is reported. The strategy relies on the coupling of N-phenyl trifluoroacetimidate disaccharide donors to a common rhamnosyl acceptor. The resulting trisaccharide thioglycosides were finally coupled to an n-pentenyl galactoside acceptor to access the two protected branched tetrasaccharides.
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Affiliation(s)
- Alexandra N Zakharova
- Center for Nanomedicine and Theranostics, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
| | - Shahid I Awan
- Center for Nanomedicine and Theranostics, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
| | - Faranak Nami
- Center for Nanomedicine and Theranostics, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
| | - Charlotte H Gotfredsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
| | - Robert Madsen
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
| | - Mads H Clausen
- Center for Nanomedicine and Theranostics, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
- Department of Chemistry, Technical University of Denmark, Kemitorvet 207, DK-2800 Kgs. Lyngby, Denmark.
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6
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Joosten A, Boultadakis-Arapinis M, Gandon V, Micouin L, Lecourt T. Substitution of the Participating Group of Glycosyl Donors by a Halogen Atom: Influence on the Rearrangement of Transient Orthoesters Formed during Glycosylation Reactions. J Org Chem 2017; 82:3291-3297. [DOI: 10.1021/acs.joc.6b03088] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Antoine Joosten
- Normandie Univ, INSA Rouen, UNIROUEN, CNRS, COBRA UMR 6014, 76000 Rouen, France
| | | | - Vincent Gandon
- Institut de Chimie
Moléculaire et des Matériaux d’Orsay, CNRS UMR
8182, Univ. Paris-Sud, Université Paris-Saclay, Bâtiment 420, 91405 Orsay, France
| | - Laurent Micouin
- Université Paris Descartes, Sorbonne Paris Cité, CNRS (UMR
8601), 75006 Paris, France
| | - Thomas Lecourt
- Normandie Univ, INSA Rouen, UNIROUEN, CNRS, COBRA UMR 6014, 76000 Rouen, France
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7
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Bernardi S, Yi D, He N, Casnati A, Fessner WD, Sansone F. Complete tetraglycosylation of a calix[4]arene by a chemo-enzymatic approach. Org Biomol Chem 2017; 15:10064-10072. [DOI: 10.1039/c7ob02448g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
It was demonstrated that a calixarene can be a substrate for glycosyltransferases and thanks to an exhaustive glycosylation a multivalent tetralactosaminyl calix[4]arene was obtained.
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Affiliation(s)
- Silvia Bernardi
- Dipartimento di Scienze Chimiche
- della Vita e della Sostenibilità Ambientale
- Università di Parma
- I-43124 Parma
- Italy
| | - Dong Yi
- Technische Universität Darmstadt
- Institute of Organic Chemistry & Biochemistry
- D-64287 Darmstadt
- Germany
| | - Ning He
- Technische Universität Darmstadt
- Institute of Organic Chemistry & Biochemistry
- D-64287 Darmstadt
- Germany
| | - Alessandro Casnati
- Dipartimento di Scienze Chimiche
- della Vita e della Sostenibilità Ambientale
- Università di Parma
- I-43124 Parma
- Italy
| | - Wolf-Dieter Fessner
- Technische Universität Darmstadt
- Institute of Organic Chemistry & Biochemistry
- D-64287 Darmstadt
- Germany
| | - Francesco Sansone
- Dipartimento di Scienze Chimiche
- della Vita e della Sostenibilità Ambientale
- Università di Parma
- I-43124 Parma
- Italy
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8
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Chuh KN, Batt AR, Pratt MR. Chemical Methods for Encoding and Decoding of Posttranslational Modifications. Cell Chem Biol 2016; 23:86-107. [PMID: 26933738 DOI: 10.1016/j.chembiol.2015.11.006] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2015] [Revised: 11/25/2015] [Accepted: 11/25/2015] [Indexed: 12/13/2022]
Abstract
A large array of posttranslational modifications can dramatically change the properties of proteins and influence different aspects of their biological function such as enzymatic activity, binding interactions, and proteostasis. Despite the significant knowledge that has been gained about the function of posttranslational modifications using traditional biological techniques, the analysis of the site-specific effects of a particular modification, the identification of the full complement of modified proteins in the proteome, and the detection of new types of modifications remains challenging. Over the years, chemical methods have contributed significantly in both of these areas of research. This review highlights several posttranslational modifications where chemistry-based approaches have made significant contributions to our ability to both prepare homogeneously modified proteins and identify and characterize particular modifications in complex biological settings. As the number and chemical diversity of documented posttranslational modifications continues to rise, we believe that chemical strategies will be essential to advance the field in years to come.
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Affiliation(s)
- Kelly N Chuh
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA
| | - Anna R Batt
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA
| | - Matthew R Pratt
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089, USA; Department of Molecular and Computational Biology, University of Southern California, Los Angeles, CA 90089, USA.
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9
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Nguyen H, Zhu D, Li X, Zhu J. Stereoselective Construction of β‐Mannopyranosides by Anomeric
O
‐Alkylation: Synthesis of the Trisaccharide Core of
N
‐linked Glycans. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201600488] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Hai Nguyen
- Department of Chemistry and Biochemistry and School of Green Chemistry and Engineering The University of Toledo Toledo OH 43606 USA
| | - Danyang Zhu
- Department of Chemistry and Biochemistry and School of Green Chemistry and Engineering The University of Toledo Toledo OH 43606 USA
| | - Xiaohua Li
- Department of Natural Sciences University of Michigan-Dearborn Dearborn MI 48128 USA
| | - Jianglong Zhu
- Department of Chemistry and Biochemistry and School of Green Chemistry and Engineering The University of Toledo Toledo OH 43606 USA
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10
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Nguyen H, Zhu D, Li X, Zhu J. Stereoselective Construction of β-Mannopyranosides by Anomeric O-Alkylation: Synthesis of the Trisaccharide Core of N-linked Glycans. Angew Chem Int Ed Engl 2016; 55:4767-71. [PMID: 26948686 DOI: 10.1002/anie.201600488] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2016] [Indexed: 01/07/2023]
Abstract
A new and efficient approach for direct and stereoselective synthesis of β-mannopyranosides by anomeric O-alkylation has been developed. This anomeric O-alkylation of mannopyranose-derived lactols is proposed to occur under synergistic control of a kinetic anomeric effect and metal chelation. The presence of a conformationally flexible C6 oxygen atom in the sugar-derived lactol donors is required for this anomeric O-alkylation to be efficient, probably because of its chelation with cesium ion. In contrast, the presence of a C2 oxygen atom plays a minor role. This glycosylation method has been successfully utilized for the synthesis of the trisaccharide core of complex N-linked glycans.
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Affiliation(s)
- Hai Nguyen
- Department of Chemistry and Biochemistry and School of Green Chemistry and Engineering, The University of Toledo, Toledo, OH, 43606, USA
| | - Danyang Zhu
- Department of Chemistry and Biochemistry and School of Green Chemistry and Engineering, The University of Toledo, Toledo, OH, 43606, USA
| | - Xiaohua Li
- Department of Natural Sciences, University of Michigan-Dearborn, Dearborn, MI, 48128, USA.
| | - Jianglong Zhu
- Department of Chemistry and Biochemistry and School of Green Chemistry and Engineering, The University of Toledo, Toledo, OH, 43606, USA.
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11
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Schuster HJ, Vijayakrishnan B, Davis BG. Chain-growth polyglycosylation: synthesis of linker-equipped mannosyl oligomers. Carbohydr Res 2015; 403:135-41. [DOI: 10.1016/j.carres.2014.06.021] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2014] [Revised: 06/16/2014] [Accepted: 06/19/2014] [Indexed: 11/29/2022]
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12
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13
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Adamo R, Micoli F, Proietti D, Berti F. Efficient Synthesis of Meningococcal X Polysaccharide Repeating Unit (N-Acetylglucosamine-4-phosphate) as Analytical Standard for Polysaccharide Determination. SYNTHETIC COMMUN 2014. [DOI: 10.1080/00397911.2013.853189] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Roberto Adamo
- a Research Center , Novartis Vaccines and Diagnostics , Siena , Italy
| | - Francesca Micoli
- b Research Center , Novartis Vaccines Institute for Global Health , Siena , Italy
| | - Daniela Proietti
- a Research Center , Novartis Vaccines and Diagnostics , Siena , Italy
| | - Francesco Berti
- a Research Center , Novartis Vaccines and Diagnostics , Siena , Italy
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14
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Sanapala SR, Kulkarni SS. Chemical synthesis of asparagine-linked archaeal N-glycan from Methanothermus fervidus. Chemistry 2014; 20:3578-83. [PMID: 24616211 DOI: 10.1002/chem.201304950] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Revised: 02/02/2014] [Indexed: 12/12/2022]
Abstract
Several N-linked glycoproteins have been identified in archaea and there is growing evidence that the N-glycan is involved in survival and functioning of archaea in extreme conditions. Chemical synthesis of the archaeal N-glycans represents a crucial step towards understanding the putative function of protein glycosylation in archaea. Herein the first total synthesis of the archaeal L-asparagine linked hexasaccharide from Methanothermus fervidus is reported using a highly convergent [3+3] glycosylation approach in high overall yields. The synthesis relies on efficient preparation of regioselectively protected thioglycoside building blocks for orthogonal glycosylations and late stage N-aspartylation.
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Affiliation(s)
- Someswara Rao Sanapala
- Department of Chemistry, Indian Institute of Technology Bombay, Powai, Mumbai, 400076 (India)
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15
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Nishimura Y, Shudo H, Seto H, Hoshino Y, Miura Y. Syntheses of sulfated glycopolymers and analyses of their BACE-1 inhibitory activity. Bioorg Med Chem Lett 2013; 23:6390-5. [DOI: 10.1016/j.bmcl.2013.09.057] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Revised: 09/18/2013] [Accepted: 09/20/2013] [Indexed: 12/11/2022]
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16
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Walczak MA, Hayashida J, Danishefsky SJ. Building biologics by chemical synthesis: practical preparation of di- and triantennary N-linked glycoconjugates. J Am Chem Soc 2013; 135:4700-3. [PMID: 23461434 PMCID: PMC3632434 DOI: 10.1021/ja401385v] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
A unified strategy for the syntheses of bi- and triantennary fully sialylated N-glycans is described. The synthesis capitalizes on a global glycosylation strategy that delivers the desired undeca- and tetradecasaccharide in excellent yields. Finally, conjugation of the glycan to PSMA oligopeptide is described.
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Affiliation(s)
- Maciej A. Walczak
- Laboratory for Bioorganic Chemistry, Sloan-Kettering Institute for Cancer Research, 1275 York Avenue, New York, New York 10065, United States
| | - Joji Hayashida
- Laboratory for Bioorganic Chemistry, Sloan-Kettering Institute for Cancer Research, 1275 York Avenue, New York, New York 10065, United States
| | - Samuel J. Danishefsky
- Laboratory for Bioorganic Chemistry, Sloan-Kettering Institute for Cancer Research, 1275 York Avenue, New York, New York 10065, United States
- Department of Chemistry, Columbia University, 3000 Broadway, New York, New York 10027, United States
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17
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Wang P, Aussedat B, Vohra Y, Danishefsky SJ. An advance in the chemical synthesis of homogeneous N-linked glycopolypeptides by convergent aspartylation. Angew Chem Int Ed Engl 2012; 51:11571-5. [PMID: 23011954 PMCID: PMC3500778 DOI: 10.1002/anie.201205038] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2012] [Revised: 07/17/2012] [Indexed: 12/12/2022]
Abstract
We describe a useful advance in glycopeptide synthesis. We have developed a one-flask aspartylation/deprotection method, wherein long peptide fragments, bearing proximal pseudoproline functionality are merged with complex glycan domains. Following aspartylation, acidmediated global deprotection reveals the elaborated glycopeptide. The temporary pseudoproline functionality serves to suppress formation of aspartimide side products during solid phase peptide synthesis and aspartylation.
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Affiliation(s)
- Ping Wang
- Laboratory for Bioorganic Chemistry, Sloan-Kettering Institute for Cancer Research, 1275 York Avenue, New York, NY 10065, USA
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18
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Wang P, Aussedat B, Vohra Y, Danishefsky SJ. An Advance in the Chemical Synthesis of Homogeneous N-Linked Glycopolypeptides by Convergent Aspartylation. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201205038] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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19
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Kalmár L, Ágoston K, Szurmai Z, Döncző B, Kerékgyártó J. Synthesis of FullyO-BenzylatedN-Linked Core Pentasaccharide Glycosyl Azide. J Carbohydr Chem 2012. [DOI: 10.1080/07328303.2011.642433] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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20
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Lu Z, Ding N, Zhang W, Wang P, Li Y. A convenient synthesis of the core trisaccharide of the N-glycans. Tetrahedron Lett 2011. [DOI: 10.1016/j.tetlet.2011.04.060] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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21
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Epoxidation of glycals with oxone–acetone–tetrabutylammonium hydrogen sulfate: a convenient access to simple β-d-glycosides and to α-d-mannosamine and d-talosamine donors. ACTA ACUST UNITED AC 2011. [DOI: 10.1016/j.tetasy.2011.06.027] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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22
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Huang W, Li J, Wang LX. Unusual transglycosylation activity of Flavobacterium meningosepticum endoglycosidases enables convergent chemoenzymatic synthesis of core fucosylated complex N-glycopeptides. Chembiochem 2011; 12:932-41. [PMID: 21374780 DOI: 10.1002/cbic.201000763] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2010] [Indexed: 11/05/2022]
Abstract
Structurally well defined, homogeneous glycopeptides and glycoproteins are indispensable tools for functional glycomics studies. By screening of various endo-β-N-acetylglucosaminidases through the use of appropriate synthetic donor and acceptor substrates, we have found that the Flavobacterium meningosepticum endo-β-N-acetyl-glucosaminidases (GH family 18), including Endo-F2 and Endo-F3, were able to glycosylate α-1,6-fucosylated GlcNAc derivative to provide natural, core-fucosylated complex-type N-glycopeptides. The Endo-F2 and Endo-F3 were efficient for transferring both sialylated and asia-lylated glycans and were highly specific for an α-1,6-fucosylated GlcNAc-peptide as acceptor for transglycosylation, showing only marginal activity with non-fucosylated GlcNAc-peptides. In contrast, we found that the commonly used endoglycosidases such as Endo-A and Endo-M, which belong to GH family 85, were unable to take α-1,6-fucosyl-GlcNAc derivative as acceptors for transglycosylation. The novel activity of Endo-F2 and Endo-F3 was successfully applied for a highly convergent chemoenzymatic synthesis of a full-sized CD52 glycopeptide antigen carrying both terminal sialic acid and core fucose. This is the first report on endoglycosidases that are able to glycosylate α-1,6-fucosylated GlcNAc derivatives to form natural core-fucosylated glycopeptides.
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Affiliation(s)
- Wei Huang
- Institute of Human Virology and Department of Biochemistry and Molecular Biology, University of Maryland School of Medicine, Baltimore, Maryland 21201 (USA), Fax: (+1) 410-706-4694
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23
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Liu Y, Chan YM, Wu J, Chen C, Benesi A, Hu J, Wang Y, Chen G. Chemical synthesis of a bisphosphorylated mannose-6-phosphate N-glycan and its facile monoconjugation with human carbonic anhydrase II for in vivo fluorescence imaging. Chembiochem 2011; 12:685-90. [PMID: 21404409 DOI: 10.1002/cbic.201000785] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2010] [Indexed: 12/11/2022]
Affiliation(s)
- Yunpeng Liu
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, PA 16802, USA
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Huang W, Zhang X, Ju T, Cummings RD, Wang LX. Expeditious chemoenzymatic synthesis of CD52 glycopeptide antigens. Org Biomol Chem 2010; 8:5224-33. [PMID: 20848033 DOI: 10.1039/c0ob00341g] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
CD52 is a glycosylphosphatidylinositol (GPI)-anchored glycopeptide antigen found on sperm cells and human lymphocytes. Recent structural studies indicate that sperm-associated CD52 antigen carries both a complex type N-glycan and an O-glycan on the polypeptide backbone. To facilitate functional and immunological studies of distinct CD52 glycoforms, we report in this paper the first chemoenzymatic synthesis of homogeneous CD52 glycoforms carrying both N- and O-glycans. The synthetic strategy consists of two key steps: monosaccharide primers GlcNAc and GalNAc were first installed at the pre-determined N- and O-glycosylation sites by a facile solid-phase peptide synthesis, and then the N- and O-glycans were extended by respective enzymatic glycosylations. It was found that the endoglycosidase-catalyzed transglycosylation allowed efficient attachment of an intact N-glycan in a single step at the N-glycosylation site, while the recombinant human T-synthase could independently extend the O-linked GalNAc to form the core 1 O-glycan. This chemoenzymatic approach is highly convergent and permits easy construction of various homogeneous CD52 glycoforms from a common polypeptide precursor. In addition, the introduction of a latent thiol group in the form of protected cysteamine at the C-terminus of the CD52 glycoforms will enable site-specific conjugation to a carrier protein to provide immunogens for generating CD52 glycoform-specific antibodies for functional studies.
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Affiliation(s)
- Wei Huang
- Institute of Human Virology and Department of Biochemistry & Molecular Biology, University of Maryland School of Medicine, Baltimore, Maryland 21201, USA
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25
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Dinkelaar J, Duivenvoorden BA, Wennekes T, Overkleeft HS, Boot RG, Aerts JMFG, Codée JDC, van der Marel GA. A Preparative Synthesis of Human Chitinase Fluorogenic Substrate (4′-Deoxychitobiosyl)-4-methylumbelliferone. European J Org Chem 2010. [DOI: 10.1002/ejoc.201000080] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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26
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Richardson JP, Chan CH, Blanc J, Saadi M, Macmillan D. Exploring neoglycoprotein assembly through native chemical ligation using neoglycopeptide thioesters prepared via N→S acyl transfer. Org Biomol Chem 2010; 8:1351-60. [DOI: 10.1039/b920535g] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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27
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Masania J, Li J, Smerdon SJ, Macmillan D. Access to phosphoproteins and glycoproteins through semi-synthesis, Native Chemical Ligation and N→S acyl transfer. Org Biomol Chem 2010; 8:5113-9. [DOI: 10.1039/c0ob00363h] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
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28
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Tanaka K, Fujii Y, Tokimoto H, Mori Y, Tanaka SI, Bao GM, Siwu ER, Nakayabu A, Fukase K. Synthesis of a Sialic Acid Containing Complex-TypeN-Glycan on a Solid Support. Chem Asian J 2009; 4:574-80. [DOI: 10.1002/asia.200800411] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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29
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Wang G, Zhang W, Lu Z, Wang P, Zhang X, Li Y. Convenient Synthesis of an N-Glycan Octasaccharide of the Bisecting Type. J Org Chem 2009; 74:2508-15. [DOI: 10.1021/jo900016j] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Guangfa Wang
- Key Laboratory of Marine Drugs, The Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
| | - Wei Zhang
- Key Laboratory of Marine Drugs, The Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
| | - Zhichao Lu
- Key Laboratory of Marine Drugs, The Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
| | - Peng Wang
- Key Laboratory of Marine Drugs, The Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
| | - Xiuli Zhang
- Key Laboratory of Marine Drugs, The Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
| | - Yingxia Li
- Key Laboratory of Marine Drugs, The Ministry of Education of China, School of Medicine and Pharmacy, Ocean University of China, Qingdao 266003, China
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30
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Affiliation(s)
- David P Gamblin
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Mansfield Road, Oxford OX1 3TA, United Kingdom
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31
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Tanaka T, Nagai H, Noguchi M, Kobayashi A, Shoda SI. One-step conversion of unprotected sugars to β-glycosyl azides using 2-chloroimidazolinium salt in aqueous solution. Chem Commun (Camb) 2009:3378-9. [DOI: 10.1039/b905761g] [Citation(s) in RCA: 156] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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32
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Dudnik AS, Sromek AW, Rubina M, Kim JT, Kel’in AV, Gevorgyan V. Metal-catalyzed 1,2-shift of diverse migrating groups in allenyl systems as a new paradigm toward densely functionalized heterocycles. J Am Chem Soc 2008; 130:1440-52. [PMID: 18173272 PMCID: PMC3686647 DOI: 10.1021/ja0773507] [Citation(s) in RCA: 256] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A general, mild, and efficient 1,2-migration/cycloisomerization methodology toward multisubstituted 3-thio-, seleno-, halo-, aryl-, and alkyl-furans and pyrroles, as well as fused heterocycles, valuable building blocks for synthetic chemistry, has been developed. Moreover, regiodivergent conditions have been identified for C-4 bromo- and thio-substituted allenones and alkynones for the assembly of regioisomeric 2-hetero substituted furans selectively. It was demonstrated that, depending on reaction conditions, ambident substrates can be selectively transformed into furan products, as well as undergo selective 6-exo-dig or Nazarov cyclizations. Our mechanistic investigations have revealed that the transformation proceeds via allenylcarbonyl or allenylimine intermediates followed by 1,2-group migration to the allenyl sp carbon during cycloisomerization. It was found that 1,2-migration of chalcogens and halogens predominantly proceeds via formation of irenium intermediates. Analogous intermediate can also be proposed for 1,2-aryl shift. Furthermore, it was shown that the cycloisomerization cascade can be catalyzed by Brønsted acids, albeit less efficiently, and commonly observed reactivity of Lewis acid catalysts cannot be attributed to the eventual formation of proton. Undoubtedly, thermally induced or Lewis acid-catalyzed transformations proceed via intramolecular Michael addition or activation of the enone moiety pathways, whereas certain carbophilic metals trigger carbenoid/oxonium type pathway. However, a facile cycloisomerization in the presence of cationic complexes, as well as observed migratory aptitude in the cycloisomerization of unsymmetrically disubstituted aryl- and alkylallenes, strongly supports electrophilic nature for this transformation. Full mechanistic details, as well as the scope of this transformation, are discussed.
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Affiliation(s)
- Alexander S. Dudnik
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, 4500 SES, M/C 111, Chicago, Illinois 60607-7061
| | - Anna W. Sromek
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, 4500 SES, M/C 111, Chicago, Illinois 60607-7061
| | - Marina Rubina
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, 4500 SES, M/C 111, Chicago, Illinois 60607-7061
| | - Joseph T. Kim
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, 4500 SES, M/C 111, Chicago, Illinois 60607-7061
| | - Alexander V. Kel’in
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, 4500 SES, M/C 111, Chicago, Illinois 60607-7061
| | - Vladimir Gevorgyan
- Department of Chemistry, University of Illinois at Chicago, 845 West Taylor Street, 4500 SES, M/C 111, Chicago, Illinois 60607-7061
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Mandai H, Mukaiyama T. 6-Nitro-2-benzothiazolyl α-Mannoside: A Highly Efficient Mannosyl Donor in Constructing β-Man(1→4)GlcN Linkage and Its Application to the Synthesis of the Pentasaccharide Core ofN-Glycans. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2006. [DOI: 10.1246/bcsj.79.479] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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34
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35
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36
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Mandai H, Mukaiyama T. Efficient and Concise Synthesis of βMan1–4GlcN Linkage of Pentasaccharide Core by Using 6-Nitro-2-benzothiazolyl α-Mannoside. CHEM LETT 2005. [DOI: 10.1246/cl.2005.702] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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37
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Hölemann A, Seeberger PH. Carbohydrate diversity: synthesis of glycoconjugates and complex carbohydrates. Curr Opin Biotechnol 2005; 15:615-22. [PMID: 15560990 DOI: 10.1016/j.copbio.2004.10.001] [Citation(s) in RCA: 77] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The fundamental role of glycoconjugates in many biological processes is now well appreciated and has intensified the development of innovative and improved synthetic strategies. All areas of synthetic methodology have seen major advances and many complex, highly branched carbohydrates and glycoproteins have been prepared using solution- and/or solid-phase approaches. The development of an automated oligosaccharide synthesizer provides rapid access to biologically relevant compounds. These chemical approaches help to produce sufficient quantities of defined oligosaccharides for biological studies. Synthetic chemistry also supports an improved understanding of glycobiology and will eventually result in the discovery of new therapeutics.
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Affiliation(s)
- Alexandra Hölemann
- Eidgenössische Technische Hochschule Zürich, Laboratory for Organic Chemistry, ETH Hönggerberg, HCI F315, Wolfgang-Pauli-Strasse 10, CH-8093 Zürich, Switzerland
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38
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Li H, Singh S, Zeng Y, Song H, Wang LX. Chemoenzymatic synthesis of CD52 glycoproteins carrying native N-glycans. Bioorg Med Chem Lett 2005; 15:895-8. [PMID: 15686882 DOI: 10.1016/j.bmcl.2004.12.066] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2004] [Revised: 12/20/2004] [Accepted: 12/21/2004] [Indexed: 10/25/2022]
Abstract
A facile synthesis of homogeneous CD52 glycoproteins carrying native N-glycans was achieved using an endolycosidase-catalyzed oligosaccharide transfer as the key step. The synthesis consists of two steps: the solid phase synthesis of GlcNAc-CD52 and the transfer of a high-mannose type or complex type N-glycan from Man(9)GlcNAc(2) Asn or a sialglycopeptide to the GlcNAc-CD52, under the catalysis of the endo-beta-N-acetylglucosaminidases from Arthrobacter (Endo-A) and Mucor hiemalis (Endo-M), respectively.
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Affiliation(s)
- Hengguang Li
- Institute of Human Virology, University of Maryland Biotechnology Institute, University of Maryland, 725 West Lombard Street, Baltimore, MD 21201, USA
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39
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Guo Z, Shao N. Glycopeptide and glycoprotein synthesis involving unprotected carbohydrate building blocks. Med Res Rev 2005; 25:655-78. [PMID: 15895471 DOI: 10.1002/med.20033] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
This review summarizes the chemical and chemoenzymatic synthesis of glycopeptides and glycoproteins using unprotected carbohydrates as key intermediates. The synthetic methods covered herein include the convergent synthesis of glycopeptides by chemoselective ligation of peptides and free glycans, solution- and solid-phase synthesis of glycopeptides by sequential peptide elongation with unprotected glycosyl amino acids or short glycopeptides as building blocks, and the synthesis of glycopeptides by enzymatic and/or chemical elongation of the free glycans. The use of unprotected carbohydrates in these syntheses can circumvent the final-stage carbohydrate deprotection, lead to highly convergent synthetic designs, and more significantly, take advantage of the commercially available free glycans isolated from nature, which could considerably facilitate the synthesis of complex glycopeptides and glycoproteins.
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Affiliation(s)
- Zhongwu Guo
- Department of Chemistry, Case Western Reserve University, Cleveland, Ohio 44106, USA.
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40
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Abstract
Novel chemical variants of proteins have been found in nature, including potent 'microprotein' natural products and folded protein molecules that contain a cyclic polypeptide chain. Researchers have used chemical synthesis and genetic methods to make these proteins and more: protein catenanes, neoglycoproteins, and artificial protein molecules with novel architectures or made from novel building blocks. De novo design has taken a big step forward with the accurate design and construction of proteins with complex molecular structure. A variety of non-coded amino acids and other building blocks has been used to make increasingly sophisticated protein molecular devices for use as biosensors and for the study of signal transduction inside living cells.
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Affiliation(s)
- Stephen Kent
- Cummings Life Sciences Center #325, The University of Chicago, 920 East 58th Street, Chicago, Illinois 60637, USA.
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