1
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Ramu A, Rajendrakumar K. Evaluation of the Role of [{Cu(PMDETA)} 2(O 2 2-)] 2+ in Open-Air Photo ATRP of Methyl Methacrylate. ACS OMEGA 2024; 9:44916-44930. [PMID: 39554403 PMCID: PMC11561604 DOI: 10.1021/acsomega.4c02773] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2024] [Revised: 09/20/2024] [Accepted: 10/01/2024] [Indexed: 11/19/2024]
Abstract
Herein, we report an open-air, photo accelerated atom transfer radical polymerization (ATRP) of methyl methacrylate (MMA) without employing any deoxygenating agent. Under open-air photo ATRP conditions, oxygen reversibly binds with [{Cu (PMDETA)}2(O2 2-)]2+ (1) to form the required activator, which was demonstrated by simple benchtop oxygen/nitrogen purging experiments. The binding mode of oxygen in (1) (μ(η2-η2) peroxo dicopper(II)) was investigated using UV Visible-NIR, FT-Raman and X-ray photoelectron (XPS) spectroscopic techniques. DFT studies and electrochemical measurements further support the catalytic role of (1) in open-air photo ATRP. With the synergistic involvement of Cu (II)Br2, PMDETA ligand and the intensity of light (365 nm, 4.2 mW cm-2), a well-controlled rapid polymerization of MMA under open-air condition was achieved (1.25< Đ < 1.47, 94% conversion in 200 min). The bromo chain end fidelity was exemplified by chain extension experiment, block copolymerization and MALDI-ToF analysis. Other monomers such as methyl acrylate, glycidyl methacrylate, and benzyl methacrylate were also polymerized under open-air condition with reasonable control over molecular weight and Đ. An open-air photo polymerization methodology would be fruitful for applications like photocurable printing, dental, optoelectronics, stereolithography, and protective coatings where simple but rapid photopolymerizations are desirable.
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Affiliation(s)
- Arumugam Ramu
- Department
of chemistry, School of Advanced Sciences Vellore Institute of Technology, Chennai 600127, India
| | - Kannapiran Rajendrakumar
- Centre
for Advanced Materials and Innovative Technologies (CAMIT) Vellore Institute of Technology, Chennai 600127, India
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2
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Kass D, Katz S, Özgen H, Mebs S, Haumann M, García-Serres R, Dau H, Hildebrandt P, Lohmiller T, Ray K. A Bioinspired Nonheme Fe III-(O 22-)-Cu II Complex with an St = 1 Ground State. J Am Chem Soc 2024; 146:24808-24817. [PMID: 38967560 PMCID: PMC11403606 DOI: 10.1021/jacs.4c04492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/06/2024]
Abstract
Cytochrome c oxidase (CcO) is a heme copper oxidase (HCO) that catalyzes the natural reduction of oxygen to water. A profound understanding of some of the elementary steps leading to the intricate 4e-/4H+ reduction of O2 is presently lacking. A total spin St = 1 FeIII-(O22-)-CuII (IP) intermediate is proposed to reduce the overpotentials associated with the reductive O-O bond rupture by allowing electron transfer from a tyrosine moiety without the necessity of any spin-surface crossing. Direct evidence of the involvement of IP in the CcO catalytic cycle is, however, missing. A number of heme copper peroxido complexes have been prepared as synthetic models of IP, but all of them possess the catalytically nonrelevant St = 0 ground state resulting from antiferromagnetic coupling between the S = 1/2 FeIII and CuII centers. In a complete nonheme approach, we now report the spectroscopic characterization and reactivity of the FeIII-(O22-)-CuII intermediates 1 and 2, which differ only by a single -CH3 versus -H substituent on the central amine of the tridentate ligands binding to copper. Complex 1 with an end-on peroxido core and ferromagnetically (St = 1) coupled FeIII and CuII centers performs H-bonding-mediated O-O bond cleavage in the presence of phenol to generate oxoiron(IV) and exchange-coupled copper(II) and PhO• moieties. In contrast, the μ-η2:η1 peroxido complex 2, with a St = 0 ground state, is unreactive toward phenol. Thus, the implications for spin topology contributions to O-O bond cleavage, as proposed for the heme FeIII-(O22-)-CuII intermediate in CcO, can be extended to nonheme chemistry.
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Affiliation(s)
- Dustin Kass
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Sagie Katz
- Department of Chemistry, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Hivda Özgen
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
| | - Stefan Mebs
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Michael Haumann
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Ricardo García-Serres
- Université Grenoble Alpes, CEA, CNRS, Laboratoire de Chimie et Biologie des Métaux, 38000 Grenoble, France
| | - Holger Dau
- Department of Physics, Freie Universität Berlin, Arnimallee 14, 14195 Berlin, Germany
| | - Peter Hildebrandt
- Department of Chemistry, Technische Universität Berlin, Straße des 17. Juni 135, 10623 Berlin, Germany
| | - Thomas Lohmiller
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
- EPR4Energy Joint Lab, Department Spins in Energy Conversion and Quantum Information Science, Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Albert-Einstein-Straße 16, 12489 Berlin, Germany
| | - Kallol Ray
- Institut für Chemie, Humboldt-Universität zu Berlin, Brook-Taylor-Straße 2, 12489 Berlin, Germany
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3
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Hota PK, Panda S, Phan H, Kim B, Siegler MA, Karlin KD. Dioxygenase Chemistry in Nucleophilic Aldehyde Deformylations Utilizing Dicopper O 2-Derived Peroxide Complexes. J Am Chem Soc 2024; 146:23854-23871. [PMID: 39141923 PMCID: PMC11472664 DOI: 10.1021/jacs.4c06243] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/16/2024]
Abstract
The chemistry of copper-dioxygen complexes is relevant to copper enzymes in biology as well as in (ligand)Cu-O2 (or Cu2-O2) species utilized in oxidative transformations. For overall energy considerations, as applicable in chemical synthesis, it is beneficial to have an appropriate atom economy; both O-atoms of O2(g) are transferred to the product(s). However, examples of such dioxygenase-type chemistry are extremely rare or not well documented. Herein, we report on nucleophilic oxidative aldehyde deformylation reactivity by the peroxo-dicopper(II) species [Cu2II(BPMPO-)(O22-)]1+ {BPMPO-H = 2,6-bis{[(bis(2-pyridylmethyl)amino]methyl}-4-methylphenol)} and [Cu2II(XYLO-)(O22-)]1+ (XYLO- = a BPMPO- analogue possessing bis(2-{2-pyridyl}ethyl)amine chelating arms). Their dicopper(I) precursors are dioxygenase catalysts. The O2(g)-derived peroxo-dicopper(II) intermediates react rapidly with aldehydes like 2-phenylpropionaldehyde (2-PPA) and cyclohexanecarboxaldehyde (CCA) in 2-methyltetrahydrofuran at -90 °C. Warming to room temperature (RT) followed by workup results in good yields of formate (HC(O)O-) along with ketones (acetophenone or cyclohexanone). Mechanistic investigation shows that [Cu2II(BPMPO-)(O22-)]1+ species initially reacts reversibly with the aldehydes to form detectable dicopper(II) peroxyhemiacetal intermediates, for which optical titrations provide the Keq (at -90 °C) of 73.6 × 102 M-1 (2-PPA) and 10.4 × 102 M-1 (CCA). In the reaction of [Cu2II(XYLO-)(O22-)]1+ with 2-PPA, product complexes characterized by single-crystal X-ray crystallography are the anticipated dicopper(I) complex, [Cu2I(XYLO-)]1+ plus a mixed-valent Cu(I)Cu(II)-formate species. Formate was further identified and confirmed by 1H NMR spectroscopy and electrospray ionization mass spectrometry (ESI-MS) analysis. Using 18O2(g)-isotope labeling the reaction produced a high yield of 18-O incorporated acetophenone as well as formate. The overall results signify that true dioxygenase reactions have occurred, supported by a thorough mechanistic investigation.
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Affiliation(s)
- Pradip Kumar Hota
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Hai Phan
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Bohee Kim
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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4
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Karlin KD, Hota PK, Kim B, Panda S, Phan H. Synthetic Copper-(Di)oxygen Complex Generation and Reactivity Relevant to Copper Protein O 2-Processing. BULLETIN OF JAPAN SOCIETY OF COORDINATION CHEMISTRY 2024; 83:16-27. [PMID: 39372915 PMCID: PMC11448371 DOI: 10.4019/bjscc.83.16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/08/2024]
Abstract
Synthetic copper-dioxygen complex design, generation and characterization, play a crucial role in elucidating the structure/function of copper-based metalloenzymes, including dopamine β-monooxygenase, lytic polysaccharide monooxygenases, particulate methane monooxygenase, tyrosinase, hemocyanin, and catechol oxidase. Designing suitable ligands to closely mimic the variable active sites found in these enzymes poses a challenging task for synthetic bioinorganic chemists. In this review, we have highlighted a few representative ligand systems capable of stabilizing various copper-dioxygen species such as CuII-(O2 •-)(superoxide), Cu2 II-(μ-η 1:η 1-O2 2-) (trans/cis-peroxide), Cu2 II-(μ-η 2:η 2-O2 2-)(side-on peroxide) and Cun II--OOH (hydroperoxide) species. Here, we discuss the ligand type utilized, syntheses, and spectroscopic characterization of these species. We also delineate reactivity patterns, particularly electrophilic arene hydroxylation by a side-on peroxo species which occurs via a "NIH shift" mechanism and thermodynamic-kinetic relationships among Cu2-(O2 •-)/O2 2-/-OOH moieties.
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Affiliation(s)
| | | | - Bohee Kim
- Department of Chemistry, Johns Hopkins University
| | - Sanjib Panda
- Department of Chemistry, Johns Hopkins University
| | - Hai Phan
- Department of Chemistry, Johns Hopkins University
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5
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Panda S, Phan H, Dunietz EM, Brueggemeyer MT, Hota PK, Siegler MA, Jose A, Bhadra M, Solomon EI, Karlin KD. Intramolecular Phenolic H-Atom Abstraction by a N 3ArOH Ligand-Supported (μ-η 2:η 2-Peroxo)dicopper(II) Species Relevant to the Active Site Function of oxy-Tyrosinase. J Am Chem Soc 2024; 146:14942-14947. [PMID: 38775712 PMCID: PMC11193493 DOI: 10.1021/jacs.4c04402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
Abstract
Synthetic side-on peroxide-bound dicopper(II) (SP) complexes are important for understanding the active site structure/function of many copper-containing enzymes. This work highlights the formation of new {CuII(μ-η2:η2-O22-)CuII} complexes (with electronic absorption and resonance Raman (rR) spectroscopic characterization) using tripodal N3ArOH ligands at -135 °C, which spontaneously participate in intramolecular phenolic H-atom abstraction (HAA). This results in the generation of bis(phenoxyl radical)bis(μ-OH)dicopper(II) intermediates, substantiated by their EPR/UV-vis/rR spectroscopic signatures and crystal structural determination of a diphenoquinone dicopper(I) complex derived from ligand para-C═C coupling. The newly observed chemistry in these ligand-Cu systems is discussed with respect to (a) our Cu-MeAN (tridentate N,N,N',N',N″-pentamethyldipropylenetriamine)-derived model SP species, which was unreactive toward exogenous monophenol addition (J. Am. Chem. Soc. 2012, 134, 8513-8524), emphasizing the impact of intramolecularly tethered ArOH groups, and (b) recent advances in understanding the mechanism of action of the tyrosinase (Ty) enzyme.
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Affiliation(s)
- Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Hai Phan
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Eleanor M Dunietz
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | | | - Pradip Kumar Hota
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Anex Jose
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Mayukh Bhadra
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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6
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Hota PK, Jose A, Panda S, Dunietz EM, Herzog AE, Wojcik L, Le Poul N, Belle C, Solomon EI, Karlin KD. Coordination Variations within Binuclear Copper Dioxygen-Derived (Hydro)Peroxo and Superoxo Species; Influences upon Thermodynamic and Electronic Properties. J Am Chem Soc 2024; 146:13066-13082. [PMID: 38688016 PMCID: PMC11161030 DOI: 10.1021/jacs.3c14422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/02/2024]
Abstract
Copper ion is a versatile and ubiquitous facilitator of redox chemical and biochemical processes. These include the binding of molecular oxygen to copper(I) complexes where it undergoes stepwise reduction-protonation. A detailed understanding of thermodynamic relationships between such reduced/protonated states is key to elucidate the fundamentals of the chemical/biochemical processes involved. The dicopper(I) complex [CuI2(BPMPO-)]1+ {BPMPOH = 2,6-bis{[(bis(2-pyridylmethyl)amino]methyl}-4-methylphenol)} undergoes cryogenic dioxygen addition; further manipulations in 2-methyltetrahydrofuran generate dicopper(II) peroxo [CuII2(BPMPO-)(O22-)]1+, hydroperoxo [CuII2(BPMPO-)(-OOH)]2+, and superoxo [CuII2(BPMPO-)(O2•-)]2+ species, characterized by UV-vis, resonance Raman and electron paramagnetic resonance (EPR) spectroscopies, and cold spray ionization mass spectrometry. An unexpected EPR spectrum for [CuII2(BPMPO-)(O2•-)]2+ is explained by the analysis of its exchange-coupled three-spin frustrated system and DFT calculations. A redox equilibrium, [CuII2(BPMPO-)(O22-)]1+ ⇄ [CuII2(BPMPO-)(O2•-)]2+, is established utilizing Me8Fc+/Cr(η6-C6H6)2, allowing for [CuII2(BPMPO-)(O2•-)]2+/[CuII2(BPMPO-)(O22-)]1+ reduction potential calculation, E°' = -0.44 ± 0.01 V vs Fc+/0, also confirmed by cryoelectrochemical measurements (E°' = -0.40 ± 0.01 V). 2,6-Lutidinium triflate addition to [CuII2(BPMPO-)(O22-)]1+ produces [CuII2(BPMPO-)(-OOH)]2+; using a phosphazene base, an acid-base equilibrium was achieved, pKa = 22.3 ± 0.7 for [CuII2(BPMPO-)(-OOH)]2+. The BDFEOO-H = 80.3 ± 1.2 kcal/mol, as calculated for [CuII2(BPMPO-)(-OOH)]2+; this is further substantiated by H atom abstraction from O-H substrates by [CuII2(BPMPO-)(O2•-)]2+ forming [CuII2(BPMPO-)(-OOH)]2+. In comparison to known analogues, the thermodynamic and spectroscopic properties of [CuII2(BPMPO-)] O2-derived adducts can be accounted for based on chelate ring size variations built into the BPMPO- framework and the resulting enhanced CuII-ion Lewis acidity.
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Affiliation(s)
- Pradip Kumar Hota
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Anex Jose
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Eleanor M Dunietz
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Austin E Herzog
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Laurianne Wojcik
- UMR CNRS 6521, Université de Bretagne Occidentale, 6 Avenue Le Gorgeu, CS 93837, Brest Cedex 3 29238, France
| | - Nicolas Le Poul
- UMR CNRS 6521, Université de Bretagne Occidentale, 6 Avenue Le Gorgeu, CS 93837, Brest Cedex 3 29238, France
| | - Catherine Belle
- Université Grenoble-Alpes, CNRS, DCM, UMR 5250, Grenoble 38058, France
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, California 94025, United States
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, Maryland 21218, United States
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7
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Farshadfar K, Laasonen K. DFT Mechanistic Investigation into Ni(II)-Catalyzed Hydroxylation of Benzene to Phenol by H 2O 2. Inorg Chem 2024; 63:5509-5519. [PMID: 38471975 PMCID: PMC11186014 DOI: 10.1021/acs.inorgchem.3c04461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 01/31/2024] [Accepted: 02/28/2024] [Indexed: 03/14/2024]
Abstract
Introduction of oxygen into aromatic C-H bonds is intriguing from both fundamental and practical perspectives. Although the 3d metal-catalyzed hydroxylation of arenes by H2O2 has been developed by several prominent researchers, a definitive mechanism for these crucial transformations remains elusive. Herein, density functional theory calculations were used to shed light on the mechanism of the established hydroxylation reaction of benzene with H2O2, catalyzed by [NiII(tepa)]2+ (tepa = tris[2-(pyridin-2-yl)ethyl]amine). Dinickel(III) bis(μ-oxo) species have been proposed as the key intermediate responsible for the benzene hydroxylation reaction. Our findings indicate that while the dinickel dioxygen species can be generated as a stable structure, it cannot serve as an active catalyst in this transformation. The calculations allowed us to unveil an unprecedented mechanism composed of six main steps as follows: (i) deprotonation of coordinated H2O2, (ii) oxidative addition, (iii) water elimination, (iv) benzene addition, (v) ketone generation, and (vi) tautomerization and regeneration of the active catalyst. Addition of benzene to oxygen, which occurs via a radical mechanism, turns out to be the rate-determining step in the overall reaction. This study demonstrates the critical role of Ni-oxyl species in such transformations, highlighting how the unpaired spin density value on oxygen and positive charges on the Ni-O• complex affect the activation barrier for benzene addition.
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Affiliation(s)
- Kaveh Farshadfar
- Department of Chemistry and
Material Science, School of Chemical Engineering, Aalto University, 02150 Espoo, Finland
| | - Kari Laasonen
- Department of Chemistry and
Material Science, School of Chemical Engineering, Aalto University, 02150 Espoo, Finland
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8
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Lionetti D, Suseno S, Shiau AA, de Ruiter G, Agapie T. Redox Processes Involving Oxygen: The Surprising Influence of Redox-Inactive Lewis Acids. JACS AU 2024; 4:344-368. [PMID: 38425928 PMCID: PMC10900226 DOI: 10.1021/jacsau.3c00675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 12/12/2023] [Accepted: 12/13/2023] [Indexed: 03/02/2024]
Abstract
Metalloenzymes with heteromultimetallic active sites perform chemical reactions that control several biogeochemical cycles. Transformations catalyzed by such enzymes include dioxygen generation and reduction, dinitrogen reduction, and carbon dioxide reduction-instrumental transformations for progress in the context of artificial photosynthesis and sustainable fertilizer production. While the roles of the respective metals are of interest in all these enzymatic transformations, they share a common factor in the transfer of one or multiple redox equivalents. In light of this feature, it is surprising to find that incorporation of redox-inactive metals into the active site of such an enzyme is critical to its function. To illustrate, the presence of a redox-inactive Ca2+ center is crucial in the Oxygen Evolving Complex, and yet particularly intriguing given that the transformation catalyzed by this cluster is a redox process involving four electrons. Therefore, the effects of redox inactive metals on redox processes-electron transfer, oxygen- and hydrogen-atom transfer, and O-O bond cleavage and formation reactions-mediated by transition metals have been studied extensively. Significant effects of redox inactive metals have been observed on these redox transformations; linear free energy correlations between Lewis acidity and the redox properties of synthetic model complexes are observed for several reactions. In this Perspective, these effects and their relevance to multielectron processes will be discussed.
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Affiliation(s)
| | - Sandy Suseno
- Division of Chemistry and
Chemical Engineering, California Institute
of Technology, 1200 East California Boulevard, MC 127-72, Pasadena, California 91125, United States
| | - Angela A. Shiau
- Division of Chemistry and
Chemical Engineering, California Institute
of Technology, 1200 East California Boulevard, MC 127-72, Pasadena, California 91125, United States
| | - Graham de Ruiter
- Division of Chemistry and
Chemical Engineering, California Institute
of Technology, 1200 East California Boulevard, MC 127-72, Pasadena, California 91125, United States
| | - Theodor Agapie
- Division of Chemistry and
Chemical Engineering, California Institute
of Technology, 1200 East California Boulevard, MC 127-72, Pasadena, California 91125, United States
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9
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Panda S, Phan H, Karlin KD. Heme-copper and Heme O 2-derived synthetic (bioinorganic) chemistry toward an understanding of cytochrome c oxidase dioxygen chemistry. J Inorg Biochem 2023; 249:112367. [PMID: 37742491 PMCID: PMC10615892 DOI: 10.1016/j.jinorgbio.2023.112367] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 08/22/2023] [Accepted: 09/07/2023] [Indexed: 09/26/2023]
Abstract
Cytochrome c oxidase (CcO), also widely known as mitochondrial electron-transport-chain complex IV, is a multi-subunit transmembrane protein responsible for catalyzing the last step of the electron transport chain, dioxygen reduction to water, which is essential to the establishment and maintenance of the membrane proton gradient that drives ATP synthesis. Although many intermediates in the CcO catalytic cycle have been spectroscopically and/or computationally authenticated, the specifics regarding the IP intermediate, hypothesized to be a heme-Cu (hydro)peroxo species whose O-O bond homolysis is supported by a hydrogen-bonding network of water molecules, are largely obscured by the fast kinetics of the A (FeIII-O2•-/CuI/Tyr) → PM (FeIV=O/CuII-OH/Tyr•) step. In this review, we have focused on the recent advancements in the design, development, and characterization of synthetic heme-peroxo‑copper model complexes, which can circumvent the abovementioned limitation, for the investigation of the formation of IP and its O-O cleavage chemistry. Novel findings regarding (a) proton and electron transfer (PT/ET) processes, together with their contributions to exogenous phenol induced O-O cleavage, (b) the stereo-electronic tunability of the secondary coordination sphere (especially hydrogen-bonding) on the geometric and spin state alteration of the heme-peroxo‑copper unit, and (c) a plausible mechanism for the Tyr-His cofactor biogenesis, are discussed in great detail. Additionally, since the ferric-superoxide and the ferryl-oxo (Compound II) species are critically involved in the CcO catalytic cycle, this review also highlights a few fundamental aspects of these heme-only (i.e., without copper) species, including the structural and reactivity influences of electron-donating trans-axial ligands and Lewis acid-promoted H-bonding.
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Affiliation(s)
- Sanjib Panda
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Hai Phan
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, MD 21218, USA.
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10
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Interplay of electronic and geometric structure on Cu phenanthroline, bipyridine and derivative complexes, synthesis, characterization, and reactivity towards oxygen. Coord Chem Rev 2023. [DOI: 10.1016/j.ccr.2022.214943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Kipouros I, Stańczak A, Culka M, Andris E, Machonkin TR, Rulíšek L, Solomon EI. Evidence for H-bonding interactions to the μ-η 2:η 2-peroxide of oxy-tyrosinase that activate its coupled binuclear copper site. Chem Commun (Camb) 2022; 58:3913-3916. [PMID: 35237779 PMCID: PMC8966618 DOI: 10.1039/d2cc00750a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The factors that control the diverse reactivity of the μ-η2:η2-peroxo dicopper(II) oxy-intermediates in the coupled binuclear copper proteins remain elusive. Here, spectroscopic and computational methods reveal H-bonding interactions between active-site waters and the μ-η2:η2-peroxide of oxy-tyrosinase, and define their effects on the Cu(II)2O2 electronic structure and O2 activation.
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Affiliation(s)
- Ioannis Kipouros
- Department of Chemistry, Stanford University, Stanford, California 94305, USA.
| | - Agnieszka Stańczak
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10, Praha 6, Czech Republic.
- Faculty of Science, Charles University, Albertov 2038/6, 128 00 Praha 2, Czech Republic
| | - Martin Culka
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10, Praha 6, Czech Republic.
| | - Erik Andris
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10, Praha 6, Czech Republic.
| | | | - Lubomír Rulíšek
- Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí 2, 166 10, Praha 6, Czech Republic.
| | - Edward I Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, USA.
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, California 94025, USA
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12
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Tao W, Yerbulekova A, Moore CE, Shafaat HS, Zhang S. Controlling the Direction of S-Nitrosation versus Denitrosation: Reversible Cleavage and Formation of an S-N Bond within a Dicopper Center. J Am Chem Soc 2022; 144:2867-2872. [PMID: 35139302 DOI: 10.1021/jacs.1c12799] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Iron and copper enzymes are known to promote reversible S-nitrosation/denitrosation in biology. However, it is unclear how the direction of S-N bond formation/scission is controlled. Herein, we demonstrate the interconversion of metal-S-nitrosothiol adduct M(RSNO) and metal nitrosyl thiolate complex M(NO)(SR), which may regulate the direction of reversible S-(de)nitrosation. Treatment of a dicopper(I,I) complex with RSNO leads to a mixture of two structural isomers: dicopper(I,I) S-nitrosothiol [CuICuI(RSNO)]2+ and dicopper(II,II) nitrosyl thiolate [CuIICuII(NO)(SR)]2+. The Keq between these two structural isomers is sensitive to temperature, the solvent coordination ability, and counterions. Our study illustrates how copper centers can modulate the direction of RS-NO bond formation and cleavage through a minor perturbation of the local environment.
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13
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Zhong X, Bouchey CJ, Kabir E, Tolman WB. Using a monocopper-superoxo complex to prepare multicopper-peroxo species relevant to proposed enzyme intermediates. J Inorg Biochem 2021; 222:111498. [PMID: 34120095 PMCID: PMC9835715 DOI: 10.1016/j.jinorgbio.2021.111498] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Revised: 05/29/2021] [Accepted: 05/29/2021] [Indexed: 01/16/2023]
Abstract
With the goal of generating a (peroxo)tricopper species analogous to the Peroxy Intermediate proposed for multicopper oxidases, solutions of the copper-superoxide complex [K(Krypt)][LCuO2] (L = N,N'-bis(2,6-diisopropylphenyl)-2,6-pyridinedicarboxamide, Krypt = 4,7,13,16,21,24-hexaoxa-1,10-diazabicyclo[8.8.8]hexacosane) were reacted with the dicopper(I) complex [(TPBN)Cu2(MeCN)2][PF6]2 at -70 °C (TPBN = N,N,N',N'-tetrakis-(2-pyridylmethyl)-1,4-diaminobutane). A metastable intermediate formed, which on the basis of UV-vis, EPR, and resonance Raman spectroscopy was proposed to derive from reaction of two equivalents of the copper-superoxide with one equivalent of the dicopper(I) complex to yield a complex with two (peroxo)dicopper moieties rather than the desired (peroxo)tricopper PI model. A similar intermediate formed upon reaction of [K(Krypt)][LCuO2] with [(BPMA)Cu(MeCN)][PF6] (BPMA = N,N-bis(2-pyridylmethyl)-methyl-amine), which contained the same donor set as provided by TPBN. Comparison of resonance Raman data and consideration of structural preferences for LCuX species led to hypothesis of a μ-η1:η2-peroxo structure for both intermediates.
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Affiliation(s)
- Xinzhe Zhong
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America
| | - Caitlin J. Bouchey
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America,Department of Chemistry, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN 55455, United States of America
| | - Evanta Kabir
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America
| | - William B. Tolman
- Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box 1134, St. Louis, MO 63130-4899, United States of America,Corresponding author. (W.B. Tolman)
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14
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Negri C, Selleri T, Borfecchia E, Martini A, Lomachenko KA, Janssens TVW, Cutini M, Bordiga S, Berlier G. Structure and Reactivity of Oxygen-Bridged Diamino Dicopper(II) Complexes in Cu-Ion-Exchanged Chabazite Catalyst for NH 3-Mediated Selective Catalytic Reduction. J Am Chem Soc 2020; 142:15884-15896. [PMID: 32830975 PMCID: PMC8011910 DOI: 10.1021/jacs.0c06270] [Citation(s) in RCA: 70] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Indexed: 01/14/2023]
Abstract
The NH3-mediated selective catalytic reduction (NH3-SCR) of NOx over Cu-ion-exchanged chabazite (Cu-CHA) catalysts is the basis of the technology for abatement of NOx from diesel vehicles. A crucial step in this reaction is the activation of oxygen. Under conditions for low-temperature NH3-SCR, oxygen only reacts with CuI ions, which are present as mobile CuI diamine complexes [CuI(NH3)2]+. To determine the structure and reactivity of the species formed by oxidation of these CuI diamine complexes with oxygen at 200 °C, we have followed this reaction, using a Cu-CHA catalyst with a Si/Al ratio of 15 and 2.6 wt% Cu, by X-ray absorption spectroscopies (XANES and EXAFS) and diffuse reflectance UV-Vis spectroscopy, with the support of DFT calculations and advanced EXAFS wavelet transform analysis. The results provide unprecedented direct evidence for the formation of a [Cu2(NH3)4O2]2+ mobile complex with a side-on μ-η2,η2-peroxo diamino dicopper(II) structure, accounting for 80-90% of the total Cu content. These [Cu2(NH3)4O2]2+ are completely reduced to [CuI(NH3)2]+ at 200 °C in a mixture of NO and NH3. Some N2 is formed as well, which suggests the role of the dimeric complexes in the low-temperature NH3-SCR reaction. The reaction of [Cu2(NH3)4O2]2+ complexes with NH3 leads to a partial reduction of the Cu without any formation of N2. The reaction with NO results in an almost complete reduction to CuI, under the formation of N2. This indicates that the low-temperature NH3-SCR reaction proceeds via a reaction of these complexes with NO.
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Affiliation(s)
- Chiara Negri
- Department
of Chemistry and NIS Centre, University
of Turin, Via Giuria
7, I-10125 Turin, Italy
| | - Tommaso Selleri
- Dipartimento
di Energia, Laboratorio di Catalisi e Processi
Catalitici, Politecnico
di Milano, Via La Masa 34, I-20156 Milano, Italy
| | - Elisa Borfecchia
- Department
of Chemistry and NIS Centre, University
of Turin, Via Giuria
7, I-10125 Turin, Italy
| | - Andrea Martini
- Department
of Chemistry and NIS Centre, University
of Turin, Via Giuria
7, I-10125 Turin, Italy
- Smart
Materials Research Institute, Southern Federal
University, Sladkova
Street 174/28, 344090 Rostov-on-Don, Russia
| | - Kirill A. Lomachenko
- European
Synchrotron Radiation Facility, 71 Avenue des Martyrs, CS 40220, 38043 Grenoble Cedex 9, France
| | | | - Michele Cutini
- Department
of Chemistry and NIS Centre, University
of Turin, Via Giuria
7, I-10125 Turin, Italy
| | - Silvia Bordiga
- Department
of Chemistry and NIS Centre, University
of Turin, Via Giuria
7, I-10125 Turin, Italy
| | - Gloria Berlier
- Department
of Chemistry and NIS Centre, University
of Turin, Via Giuria
7, I-10125 Turin, Italy
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15
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Fujieda N, Umakoshi K, Ochi Y, Nishikawa Y, Yanagisawa S, Kubo M, Kurisu G, Itoh S. Copper–Oxygen Dynamics in the Tyrosinase Mechanism. Angew Chem Int Ed Engl 2020; 59:13385-13390. [DOI: 10.1002/anie.202004733] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Indexed: 12/14/2022]
Affiliation(s)
- Nobutaka Fujieda
- Department of Applied Life Sciences Graduate School of Life and Environmental Sciences Osaka Prefecture University 1-1 Gakuen-cho, Naka-ku, Sakai-shi Osaka 599-8531 Japan
| | - Kyohei Umakoshi
- Department of Material and Life Science Graduate School of Engineering Osaka University 2-1 Yamada-oka, Suita Osaka 565-0871 Japan
| | - Yuta Ochi
- Department of Applied Life Sciences Graduate School of Life and Environmental Sciences Osaka Prefecture University 1-1 Gakuen-cho, Naka-ku, Sakai-shi Osaka 599-8531 Japan
| | - Yosuke Nishikawa
- Institute for Protein Research Osaka University 3-2 Yamada-oka, Suita Osaka 565-0871 Japan
| | - Sachiko Yanagisawa
- Graduate School of Life Science University of Hyogo 3-2-1 Kouto, Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
| | - Minoru Kubo
- Graduate School of Life Science University of Hyogo 3-2-1 Kouto, Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
| | - Genji Kurisu
- Institute for Protein Research Osaka University 3-2 Yamada-oka, Suita Osaka 565-0871 Japan
| | - Shinobu Itoh
- Department of Material and Life Science Graduate School of Engineering Osaka University 2-1 Yamada-oka, Suita Osaka 565-0871 Japan
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16
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Fujieda N, Umakoshi K, Ochi Y, Nishikawa Y, Yanagisawa S, Kubo M, Kurisu G, Itoh S. Copper–Oxygen Dynamics in the Tyrosinase Mechanism. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202004733] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Nobutaka Fujieda
- Department of Applied Life Sciences Graduate School of Life and Environmental Sciences Osaka Prefecture University 1-1 Gakuen-cho, Naka-ku, Sakai-shi Osaka 599-8531 Japan
| | - Kyohei Umakoshi
- Department of Material and Life Science Graduate School of Engineering Osaka University 2-1 Yamada-oka, Suita Osaka 565-0871 Japan
| | - Yuta Ochi
- Department of Applied Life Sciences Graduate School of Life and Environmental Sciences Osaka Prefecture University 1-1 Gakuen-cho, Naka-ku, Sakai-shi Osaka 599-8531 Japan
| | - Yosuke Nishikawa
- Institute for Protein Research Osaka University 3-2 Yamada-oka, Suita Osaka 565-0871 Japan
| | - Sachiko Yanagisawa
- Graduate School of Life Science University of Hyogo 3-2-1 Kouto, Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
| | - Minoru Kubo
- Graduate School of Life Science University of Hyogo 3-2-1 Kouto, Kamigori-cho, Ako-gun Hyogo 678-1297 Japan
| | - Genji Kurisu
- Institute for Protein Research Osaka University 3-2 Yamada-oka, Suita Osaka 565-0871 Japan
| | - Shinobu Itoh
- Department of Material and Life Science Graduate School of Engineering Osaka University 2-1 Yamada-oka, Suita Osaka 565-0871 Japan
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17
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Abe T, Shiota Y, Itoh S, Yoshizawa K. Theoretical rationalization for the equilibrium between (μ-η 2:η 2-peroxido)Cu IICu II and bis(μ-oxido)Cu IIICu III complexes: perturbational effects from ligand frameworks. Dalton Trans 2020; 49:6710-6717. [PMID: 32368776 DOI: 10.1039/d0dt01001d] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
DFT calculations are carried out to investigate the geometric effects of the supporting ligands in the relative energies of the (μ-η2:η2-peroxido)CuIICuII complex 1 and the bis(μ-oxido)CuIIICuIII complex 2. The N3-tridentate ligand bearing acyclic propane diamine framework La preferentially provided 1, whereas the N3-tridentate ligand with cyclic diamine framework such as 1,4-diazacycloheptane Lb gave 2 after the oxygenation of the corresponding CuI complexes as reported previously [S. Itoh, et al., Inorg. Chem., 2014, 53, 8786-8794]. Calculations at the B3LYP*-D3 level of theory can reasonably explain the experimental results in relative energies, structures and harmonic frequencies of 1 and 2. Perturbational effects of the diamine chelates of La and Lb especially on the equilibrium of 1 and 2 are investigated in detail. In the range from 2.30 Å to 3.40 Å of the N-N distance in the diamine moiety, 1 is more stable than 2 by 8.4 kcal mol-1 at the distance of 3.40 Å. Calculated potential energies indicate that the decrease in the N-N distance is associated with a decrease in energy of 2, leading that 2 can be most stabilized at the N-N distance of 2.60 Å. Furthermore, molecular orbitals analyses are performed to explain that the energy gaps between the σ* orbital of the O-O bond and the dx2-y2 orbitals of the CuII ions of 1 get small as the diamine moiety is shrunk, leading to facilitate the O-O bond cleavage from 1 to 2.
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Affiliation(s)
- Tsukasa Abe
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, Japan.
| | - Yoshihito Shiota
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, Japan.
| | - Shinobu Itoh
- Department of Material and Life Science, Division of Advanced Science and Biotechnology, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita, Osaka, Japan
| | - Kazunari Yoshizawa
- Institute for Materials Chemistry and Engineering and IRCCS, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, Japan.
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18
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19
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Liu YF, Shen J, Chen SL, Qiao W, Zhou S, Hong K. Theoretical study of aromatic hydroxylation of the [Cu 2(H-XYL)O 2] 2+ complex mediated by a side-on peroxo dicopper core and Cu-ligand effects. Dalton Trans 2019; 48:16882-16893. [PMID: 31621734 DOI: 10.1039/c9dt02814e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, the aromatic hydroxylation mechanism of the [Cu2(H-XYL)O2]2+ complex mediated by a peroxo dicopper core and Cu-ligand effects are investigated by using hybrid density functional theory (DFT) and the broken symmetry B3LYP method. Based on the calculated free-energy profiles, we proposed two available mechanisms. The first reaction steps of both mechanisms involve concerted O-O bond cleavage and C-O bond formation and the second step involves the Wagner-Meerwein rearrangement of the substrate by a [1,2] H shift (HA shift from CA to CC) or (HA shift from CA to OA) across the phenyl ring to form stable dienone intermediates, and this is followed by the protonation of bridging oxygen atoms to produce the final hydroxylated dicopper(ii) product. The HA shift from CA to CC mechanism is the energetically most favorable, in which the first reaction step is the rate-limiting reaction, with a calculated free-energy barrier of 19.0 kcal mol-1 and a deuterium kinetic isotope effect of 1.0, in agreement with experimental observations. The calculation also shows that the reaction started from the P-type species of [Cu2(H-XYL)O2]2+ which is capable of mediating the direct hydroxylation of aromatic substrates without the intermediacy of an O-type species. Finally, we designed some new complexes with different Cu-ligands and found the complex that computationally possesses a higher activity in mediating the hydroxylation of the ligand based aromatic substrate; here, Cu loses a pyridyl ligand donor by dissociation, compared to the [Cu2(H-XYL)O2]2+ complex.
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Affiliation(s)
- Yan Fang Liu
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China. and Shandong Provincial Key Laboratory of Synthetic Biology, Laboratory of Biofuels, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266061, China
| | - Junliang Shen
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China.
| | - Shi-Lu Chen
- School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing 100081, China
| | - Weiye Qiao
- Chemistry and Chemical Engineering College, University of Xingtai, Xingtai, Hebei 054001, China
| | - Suqin Zhou
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China.
| | - Kun Hong
- National & Local Joint Engineering Research Center for Mineral Salt Deep Utilization, Key Laboratory for Palygorskite Science and Applied Technology of Jiangsu Province, Huaiyin Institute of Technology, Huaian 223003, China.
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20
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Diaz DE, Bhadra M, Karlin KD. Dimethylanilinic N-Oxides and Their Oxygen Surrogacy Role in the Formation of a Putative High-Valent Copper-Oxygen Species. Inorg Chem 2019; 58:13746-13750. [PMID: 31580063 PMCID: PMC6896993 DOI: 10.1021/acs.inorgchem.9b02066] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The reaction of p-cyano-N,N-dimethylaniline N-oxide, an O-atom donor, with different copper(I) complexes (at room temperature and in acetone) indicates the formation via O-atom transfer of a high-valent copper oxyl species, CuII-O•, a putative key intermediate in the catalytic cycle of copper-containing monooxygenases. The formation of p-cyano-N-hydroxymethyl-N-methylaniline and p-cyano-N-methylaniline as the main products of the reaction highlight the capability of this species to hydroxylate strong C-H bonds (bond dissociation energy ∼ 90 kcal/mol). A plausible mechanism for the reactivity of this catalytic system is proposed.
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Affiliation(s)
- Daniel E. Diaz
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Mayukh Bhadra
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Kenneth D. Karlin
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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21
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Chen L, Janssens TVW, Grönbeck H. A comparative test of different density functionals for calculations of NH 3-SCR over Cu-Chabazite. Phys Chem Chem Phys 2019; 21:10923-10930. [PMID: 31089628 DOI: 10.1039/c9cp01576k] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
A general challenge in density functional theory calculations is to simultaneously account for different types of bonds. One such example is reactions in zeolites where both van der Waals and chemical bonds should be described accurately. Here, we use different exchange-correlation functionals to explore O2 dissociation over pairs of Cu(NH3)2+ complexes in Cu-Chabazite. This is an important part of selective catalytic reduction of NOx using NH3 as a reducing agent. The investigated functionals are PBE, PBE+U, PBE+D, PBE+U+D, PBE-cx, BEEF and HSE06+D. We find that the potential energy landscape for O2 activation and dissociation depends critically on the choice of functional. However, the van der Waals contributions are similarly described by the functionals accounting for this interaction. The discrepancies in the potential energy surface are instead related to different descriptions of the Cu-O chemical bond. By investigating the electronic, structural and energetic properties of reference systems including bulk copper oxides and (Cu2O2)2+ enzymatic crystals, we find that the PBE+U approach together with van der Waals corrections provides a reasonable simultaneous accuracy of the different bonds in the systems.
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Affiliation(s)
- Lin Chen
- Department of Physics and Competence Centre for Catalysis, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
| | - Ton V W Janssens
- Umicore Denmark ApS, Nøjsomhedsvej 20, DK-2800 Kgs. Lyngby, Denmark
| | - Henrik Grönbeck
- Department of Physics and Competence Centre for Catalysis, Chalmers University of Technology, SE-412 96 Göteborg, Sweden.
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22
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Cutsail GE, Gagnon NL, Spaeth AD, Tolman WB, DeBeer S. Valence-to-Core X-ray Emission Spectroscopy as a Probe of O-O Bond Activation in Cu 2 O 2 Complexes. Angew Chem Int Ed Engl 2019; 58:9114-9119. [PMID: 30994976 DOI: 10.1002/anie.201903749] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Indexed: 11/07/2022]
Abstract
Valence-to-Core (VtC) X-ray emission spectroscopy (XES) was used to directly detect the presence of an O-O bond in a complex comprising the [CuII 2 (μ-η2 :η2 -O2 )]2+ core relative to its isomer with a cleaved O-O bond having a [CuIII 2 (μ-O)2 ]2+ unit. The experimental studies are complemented by DFT calculations, which show that the unique VtC XES feature of the [CuII 2 (μ-η2 :η2 -O2 )]2+ core corresponds to the copper stabilized in-plane 2p π peroxo molecular orbital. These calculations illustrate the sensitivity of VtC XES for probing the extent of O-O bond activation in μ-η2 :η2 -O2 species and highlight the potential of this method for time-resolved studies of reaction mechanisms.
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Affiliation(s)
- George E Cutsail
- Inorganic Spectroscopy, Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470, Mülheim an der Ruhr, Germany
| | - Nicole L Gagnon
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN, 55455, USA
| | - Andrew D Spaeth
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN, 55455, USA
| | - William B Tolman
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota, 207 Pleasant St. SE, Minneapolis, MN, 55455, USA.,Present address: Department of Chemistry, Washington University in St. Louis, One Brookings Hall, Campus Box, 1134, St. Louis, MO, USA
| | - Serena DeBeer
- Inorganic Spectroscopy, Max Planck Institute for Chemical Energy Conversion, Stiftstraße 34-36, 45470, Mülheim an der Ruhr, Germany
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23
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Cutsail GE, Gagnon NL, Spaeth AD, Tolman WB, DeBeer S. Valence‐to‐Core X‐ray Emission Spectroscopy as a Probe of O−O Bond Activation in Cu
2
O
2
Complexes. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201903749] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- George E. Cutsail
- Inorganic SpectroscopyMax Planck Institute for Chemical Energy Conversion Stiftstraße 34–36 45470 Mülheim an der Ruhr Germany
| | - Nicole L. Gagnon
- Department of ChemistryCenter for Metals in BiocatalysisUniversity of Minnesota 207 Pleasant St. SE Minneapolis MN 55455 USA
| | - Andrew D. Spaeth
- Department of ChemistryCenter for Metals in BiocatalysisUniversity of Minnesota 207 Pleasant St. SE Minneapolis MN 55455 USA
| | - William B. Tolman
- Department of ChemistryCenter for Metals in BiocatalysisUniversity of Minnesota 207 Pleasant St. SE Minneapolis MN 55455 USA
- Present address: Department of ChemistryWashington University in St. Louis One Brookings Hall, Campus Box 1134 St. Louis MO USA
| | - Serena DeBeer
- Inorganic SpectroscopyMax Planck Institute for Chemical Energy Conversion Stiftstraße 34–36 45470 Mülheim an der Ruhr Germany
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24
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Nitrogen hybridization controls peroxo-oxo equilibrium in ethylenediamine bound binuclear [Cu2O2] complexes. Inorganica Chim Acta 2019. [DOI: 10.1016/j.ica.2018.11.026] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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25
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Wang B, Kinjo R. Boron-based stepwise dioxygen activation with 1,4,2,5-diazadiborinine. Chem Sci 2019; 10:2088-2092. [PMID: 30881633 PMCID: PMC6385103 DOI: 10.1039/c8sc04624g] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Accepted: 12/10/2018] [Indexed: 01/24/2023] Open
Abstract
Activation of dioxygen (O2) by 1,4,2,5-diazadiborinine 1 is reported. Two boron centers in 1 undergo a formal [4 + 2] cycloaddition with O2 at room temperature affording a bicyclo[2.2.2] molecule 2 featuring a B-O-O-B unit. Treatment of 2 with an additional equivalent of 1 leads to the cleavage of the O-O bond in 2 concomitant with the formation of two B-O bonds to yield 4 involving the extremely rare B4C2N2O2 ten-membered rings. A series of these reactions demonstrate the stepwise scission of the O[double bond, length as m-dash]O π-bond and the O-O σ-bond of O2.
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Affiliation(s)
- Baolin Wang
- Division of Chemistry and Biological Chemistry , School of Physical and Mathematical Sciences , Nanyang Technological University , Nanyang Link 21 , Singapore 637371 , Singapore .
| | - Rei Kinjo
- Division of Chemistry and Biological Chemistry , School of Physical and Mathematical Sciences , Nanyang Technological University , Nanyang Link 21 , Singapore 637371 , Singapore .
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26
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Aerobic Oxidation of Alcohols Catalysed by Cu(I)/NMI/TEMPO System and Its Mechanistic Insights. Catal Letters 2018. [DOI: 10.1007/s10562-018-2485-2] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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27
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Tsantis ST, Zagoraiou E, Savvidou A, Raptopoulou CP, Psycharis V, Szyrwiel L, Hołyńska M, Perlepes SP. Binding of oxime group to uranyl ion. Dalton Trans 2018; 45:9307-19. [PMID: 27184620 DOI: 10.1039/c6dt01293k] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Currently, the leading approach for extraction of uranium from seawater is selective sorption of UO2(2+) ions onto a poly(acrylamidoxime) fiber. Amidoxime functional groups are the most studied extractant moieties for this application, but are not perfectly selective, and understanding how these groups (and more generally the oxime groups) interact with UO2(2+) and competing ions in seawater is an important step in designing better extractants. We have started a new research programme aiming at in-depth studies of the uranyl-oxime/amidoxime interactions and we report here our first results which cover aspects of the coordination chemistry of 2-pyridyl ketoximes towards UO2(2+). Detailed synthetic investigations of various UO2(2+)/mepaoH and UO2(2+)/phpaoH reaction systems (mepaoH is methyl 2-pyridyl ketoxime and phpaoH is phenyl 2-pyridyl ketoxime) have provided access to the complexes [UO2(mepao)2(MeOH)2]{[UO2(NO3)(mepao)(MeOH)2]}2 (), [UO2(mepao)2(MeOH)2] (), [(UO2)2(O2)(O2CMe)2(mepaoH)2] () and [UO2(phpao)2(MeOH)2] (). The peroxido group in , which was isolated without the addition of external peroxide sources, probably arises from a bis(aquo)- and/or bis(hydroxido)-bridged diuranyl precursor in solution followed by photochemical oxidation of the bridging groups. The U(VI) atom in the [UO2(NO3)(mepao)(MeOH)2] molecules of () is surrounded by one nitrogen and seven oxygen atoms in a very distorted hexagonal bipyramidal geometry; two oxygen atoms from the terminal MeOH ligands, two oxygen atoms from the bidentate chelating nitrato group, and the oxygen and nitrogen atoms from the η(2) oximate group of the 1.110 (Harris notation) mepao(-) ligand define the equatorial plane. This plane consists of two terminal MeOH ligands and two η(2) oximate groups in the [UO2(mepao)2(MeOH)2] molecule () of . The structure of the [UO2(mepao)2(MeOH)2] molecule that is present in is very similar to the structure of the corresponding molecule in . The structure of the dinuclear molecule that is present in consists of two {UO2(O2CMe)(mepaoH)}(+) units bridged by a η(2):η(2):μ O2(2-) group. The equatorial plane of each uranyl site is composed of the pyridyl and oxime nitrogen atoms of a 1.011 mepaoH ligand, the oxygen atoms of an almost symmetrically coordinated bidentate chelating MeCO2(-) group and the two oxygen atoms of the peroxido groups. The core molecular structure of is similar to that of , the only difference being the presence of 1.110 phpao(-) ligands in the former instead of mepao(-) groups in the latter. The free pyridyl nitrogen atoms of mepao(-) and phpao(-) ligands of , and are acceptors of intramolecular H bonds from the ligated MeOH oxygen atoms. H-bonding and π-π stacking interactions build interesting supramolecular networks in the crystal structures of the four complexes. Compounds are the first structurally characterized uranyl complexes with 2-pyridyl aldoximes or ketoximes as ligands. IR data are discussed in terms of the coordination modes of the ligands in the complexes. (1)H NMR data in DMSO-d6 suggest that the complexes decompose in solution. The ESI(-) MS spectrum of dissolved in the NH4(O2CMe) buffer is indicative of the presence of [UO2(O2CMe)3](-), [UO2(O2CMe)2(phpao)](-), [UO2(O2CMe)(phpao)2](-) and [UO2(phpao)3](-) species. A common structural motif of the complexes containing the anionic mepao(-) (, ) and phpao(-) () ligands is that the deprotonated oximate group prefers to bind in the η(2) fashion forming a 3-membered chelating ring in spite of the presence of a pyridyl nitrogen atom, whose coordination would be expected to lead to 5- or 6-membered chelating rings.
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Affiliation(s)
| | - Eirini Zagoraiou
- Department of Chemistry, University of Patras, 26504 Patras, Greece.
| | - Aikaterini Savvidou
- Institute of Nanoscience and Nanotechnology, NCSR "Demokritos", 153 10 Aghia Paraskevi Attikis, Greece
| | - Catherine P Raptopoulou
- Institute of Nanoscience and Nanotechnology, NCSR "Demokritos", 153 10 Aghia Paraskevi Attikis, Greece
| | - Vassilis Psycharis
- Institute of Nanoscience and Nanotechnology, NCSR "Demokritos", 153 10 Aghia Paraskevi Attikis, Greece
| | - Lukasz Szyrwiel
- Department of Chemistry of Drugs, Wroclaw Medical University, ul. Borowska 211, 50-556 Wroclaw, Poland
| | - Małgorzata Hołyńska
- Fachbereich Chemie and Wissenschaftliches Zentrum für Materialwissenschaften, Philips-Universität Marburg, Hans-Meerwein-Strasse, D-35043 Marburg, Germany.
| | - Spyros P Perlepes
- Department of Chemistry, University of Patras, 26504 Patras, Greece. and Institute of Chemical Engineering Sciences, Foundation for Research and Technology-Hellas (FORTH/ICE-HT), Platani, P.O. Box 1414, 26504 Patras, Greece
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28
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Li ST, Braun-Cula B, Hoof S, Limberg C. Copper(i) complexes based on ligand systems with two different binding sites: synthesis, structures and reaction with O 2. Dalton Trans 2018; 47:544-560. [PMID: 29239430 DOI: 10.1039/c7dt03752j] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of the ligand systems L1 and L2 with two different N3-binding sites linked through a dibenzofuran spacer and their coordination properties towards a variety of CuI precursors are reported. The reaction of L1 with copper halides leads to the formation of a bimetallic species [(L1)(CuICl)2] (1), and metallodimers [((L1)(CuIX)2)2(μ-(Cu)(μ-X)2)] (2: X = Br, 3: X = I) in which two dicopper complexes are bridged by a (μ-(Cu)(μ-X)2)-moiety whereas L2 reacts with copper chloride to afford {[Cu(L2)Cl2]}n (8). Furthermore, starting from L1 in combination with copper(i) salts of weakly coordinating anions the dicopper complexes [(L1)(CuI(NCCH3))2](BF4)2 (4), [(L1)(CuI(NCCH3))(Cu(Y))](Y) (5: Y = OTf, 6: Y = ClO4) and [(L1)(Cu(dppe))](PF6)2 (7) were isolated, and employing L2, the complexes [(L2)(CuI(NCCH3))2](Z)2 (9: Z = PF6, 10: Z = OTf) and [(L2)(Cu(dppe))](PF6)2 (11) were obtained. Complexes 4-6 as well as 9 and 10 react rapidly with O2 to form metastable O2 adducts in acetone at -90 °C, where O2 is bound between the two copper centers within one dicopper molecule, as evidenced by UV/Vis spectroscopy, kinetic investigations, Raman spectroscopy and studies with ligands containing the isolated donor sites. The reactivity of the O2 adducts towards selected substrates was also investigated, showing their ability to act as electrophiles as well as nucleophiles.
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Affiliation(s)
- S T Li
- Department of Chemistry, Humboldt-Universität zu Berlin, Brook-Taylor-Str. 2, 12489 Berlin, Germany.
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29
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Electrocatalytic Properties of Cuprous Delafossite Oxides for the Alkaline Oxygen Reduction Reaction. ChemCatChem 2017. [DOI: 10.1002/cctc.201700712] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Liebhäuser P, Keisers K, Hoffmann A, Schnappinger T, Sommer I, Thoma A, Wilfer C, Schoch R, Stührenberg K, Bauer M, Dürr M, Ivanović-Burmazović I, Herres-Pawlis S. Record Broken: A Copper Peroxide Complex with Enhanced Stability and Faster Hydroxylation Catalysis. Chemistry 2017; 23:12171-12183. [PMID: 28425134 DOI: 10.1002/chem.201700887] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2017] [Indexed: 11/08/2022]
Abstract
Tyrosinase model systems pinpoint pathways to translating Nature's synthetic abilities for useful synthetic catalysts. Mostly, they use N-donor ligands which mimic the histidine residues coordinating the two copper centres. Copper complexes with bis(pyrazolyl)methanes with pyridinyl or imidazolyl moieties are already reported as excellent tyrosinase models. Substitution of the pyridinyl donor results in the new ligand HC(3-tBuPz)2 (4-CO2 MePy) which stabilises a room-temperature stable μ-η2 :η2 -peroxide dicopper(II) species upon oxygenation. It reveals highly efficient catalytic activity as it hydroxylates 8-hydroxyquinoline in high yields (TONs of up to 20) and much faster than all other model systems (max. conversion within 7.5 min). Stoichiometric reactions with para-substituted sodium phenolates show saturation kinetics which are nearly linear for electron-rich substrates. The resulting Hammett correlation proves the electrophilic aromatic substitution mechanism. Furthermore, density functional theory (DFT) calculations elucidate the influence of the substituent at the pyridinyl donor: the carboxymethyl group adjusts the basicity and nucleophilicity without additional steric demand. This substitution opens up new pathways in reactivity tuning.
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Affiliation(s)
- Patricia Liebhäuser
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
| | - Kristina Keisers
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
| | - Alexander Hoffmann
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
| | - Thomas Schnappinger
- Department für Chemie und Pharmazie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377, München, Germany
| | - Isabella Sommer
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
| | - Anne Thoma
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
| | - Claudia Wilfer
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
| | - Roland Schoch
- Department Chemie, Universität Paderborn, Warburger Straße 100, 33098, Paderborn, Germany
| | - Kai Stührenberg
- Department Chemie, Universität Paderborn, Warburger Straße 100, 33098, Paderborn, Germany
| | - Matthias Bauer
- Department Chemie, Universität Paderborn, Warburger Straße 100, 33098, Paderborn, Germany
| | - Maximilian Dürr
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058, Erlangen, Germany
| | - Ivana Ivanović-Burmazović
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058, Erlangen, Germany
| | - Sonja Herres-Pawlis
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074, Aachen, Germany
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Gennarini F, David R, López I, Le Mest Y, Réglier M, Belle C, Thibon-Pourret A, Jamet H, Le Poul N. Influence of Asymmetry on the Redox Properties of Phenoxo- and Hydroxo-Bridged Dicopper Complexes: Spectroelectrochemical and Theoretical Studies. Inorg Chem 2017; 56:7707-7719. [DOI: 10.1021/acs.inorgchem.7b00338] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Federica Gennarini
- Université de Bretagne Occidentale, CNRS UMR 6521, Laboratoire CEMCA, 6
Avenue Le Gorgeu, CS 93837, 29238 Brest Cedex 3, France
| | - Rolf David
- Université Grenoble Alpes - Grenoble1, CNRS-UGA UMR 5250, Laboratoire DCM/Cire, CS 40700, 38058 Grenoble Cedex 9, France
| | - Isidoro López
- Université de Bretagne Occidentale, CNRS UMR 6521, Laboratoire CEMCA, 6
Avenue Le Gorgeu, CS 93837, 29238 Brest Cedex 3, France
| | - Yves Le Mest
- Université de Bretagne Occidentale, CNRS UMR 6521, Laboratoire CEMCA, 6
Avenue Le Gorgeu, CS 93837, 29238 Brest Cedex 3, France
| | - Marius Réglier
- Université Aix Marseille, CNRS UMR 7313, Laboratoire de ISM2/BiosCiences, 52 avenue Escadrille Normandie-Niemen, 13397 Marseille Cedex 20, France
| | - Catherine Belle
- Université Grenoble Alpes - Grenoble1, CNRS-UGA UMR 5250, Laboratoire DCM/Cire, CS 40700, 38058 Grenoble Cedex 9, France
| | - Aurore Thibon-Pourret
- Université Grenoble Alpes - Grenoble1, CNRS-UGA UMR 5250, Laboratoire DCM/Cire, CS 40700, 38058 Grenoble Cedex 9, France
- Institut de Chimie, CLAC, UMR 7177 CNRS, Université de Strasbourg, 67008 Strasbourg, France
| | - Hélène Jamet
- Université Grenoble Alpes - Grenoble1, CNRS-UGA UMR 5250, Laboratoire DCM/Cire, CS 40700, 38058 Grenoble Cedex 9, France
| | - Nicolas Le Poul
- Université de Bretagne Occidentale, CNRS UMR 6521, Laboratoire CEMCA, 6
Avenue Le Gorgeu, CS 93837, 29238 Brest Cedex 3, France
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Goswami VE, Walli A, Förster M, Dechert S, Demeshko S, Holthausen MC, Meyer F. Acid/base triggered interconversion of μ-η 2:η 2-peroxido and bis(μ-oxido) dicopper intermediates capped by proton-responsive ligands. Chem Sci 2017; 8:3031-3037. [PMID: 28451371 PMCID: PMC5380878 DOI: 10.1039/c6sc04820j] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2016] [Accepted: 01/22/2017] [Indexed: 12/20/2022] Open
Abstract
CuII2(μ-η2:η2-peroxido) and CuIII2(μ-oxido)2 cores represent key intermediates in copper/dioxygen chemistry, and they are mechanistically important for biological hydroxylation and oxidation reactions mediated by dinuclear (type III) copper metalloenzymes. While the exact nature of the active species in different enzymes is still under debate, shifting equilibria between Cu x /O2 species is increasingly recognized as a means of switching between distinct reactivity patterns of these intermediates. Herein we report comprehensive spectroscopic, crystallographic and computational analysis of a family of synthetic CuII2(μ-η2:η2-peroxido) and CuIII2(μ-oxido)2 dicopper complexes with a bis(oxazoline) (BOX) capping ligand. In particular, we demonstrate that a reversible peroxido/bis(μ-oxido) interconversion of the [Cu2O2] core can be triggered by peripheral (de)protonation events on the ligand backbone. As the copper ions in the enzymes are typically supported by histidine imidazoles that offer a backside N atom amenable to potential (de)protonation, it is well conceivable that the shifting of equilibria between the [Cu2O2] species in response to changes in local pH is biologically relevant.
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Affiliation(s)
- V E Goswami
- Institut für Anorganische Chemie , Georg-August-Universität Göttingen , Tammannstraße 4 , 37077 Göttingen , Germany .
| | - A Walli
- Institut für Anorganische Chemie , Georg-August-Universität Göttingen , Tammannstraße 4 , 37077 Göttingen , Germany .
| | - M Förster
- Institut für Anorganische und Analytische Chemie , Goethe-Universität Frankfurt , Max-von-Laue-Straße 7 , 60438 Frankfurt am Main , Germany .
| | - S Dechert
- Institut für Anorganische Chemie , Georg-August-Universität Göttingen , Tammannstraße 4 , 37077 Göttingen , Germany .
| | - S Demeshko
- Institut für Anorganische Chemie , Georg-August-Universität Göttingen , Tammannstraße 4 , 37077 Göttingen , Germany .
| | - M C Holthausen
- Institut für Anorganische und Analytische Chemie , Goethe-Universität Frankfurt , Max-von-Laue-Straße 7 , 60438 Frankfurt am Main , Germany .
| | - F Meyer
- Institut für Anorganische Chemie , Georg-August-Universität Göttingen , Tammannstraße 4 , 37077 Göttingen , Germany .
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Quist DA, Diaz DE, Liu JJ, Karlin KD. Activation of dioxygen by copper metalloproteins and insights from model complexes. J Biol Inorg Chem 2017; 22:253-288. [PMID: 27921179 PMCID: PMC5600896 DOI: 10.1007/s00775-016-1415-2] [Citation(s) in RCA: 173] [Impact Index Per Article: 21.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Accepted: 11/11/2016] [Indexed: 02/08/2023]
Abstract
Nature uses dioxygen as a key oxidant in the transformation of biomolecules. Among the enzymes that are utilized for these reactions are copper-containing metalloenzymes, which are responsible for important biological functions such as the regulation of neurotransmitters, dioxygen transport, and cellular respiration. Enzymatic and model system studies work in tandem in order to gain an understanding of the fundamental reductive activation of dioxygen by copper complexes. This review covers the most recent advancements in the structures, spectroscopy, and reaction mechanisms for dioxygen-activating copper proteins and relevant synthetic models thereof. An emphasis has also been placed on cofactor biogenesis, a fundamentally important process whereby biomolecules are post-translationally modified by the pro-enzyme active site to generate cofactors which are essential for the catalytic enzymatic reaction. Significant questions remaining in copper-ion-mediated O2-activation in copper proteins are addressed.
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Affiliation(s)
- David A Quist
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Daniel E Diaz
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Jeffrey J Liu
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA
| | - Kenneth D Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, MD, 21218, USA.
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34
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Garcia-Bosch I, Cowley RE, Díaz DE, Peterson RL, Solomon EI, Karlin KD. Substrate and Lewis Acid Coordination Promote O-O Bond Cleavage of an Unreactive L 2Cu II2(O 22-) Species to Form L 2Cu III2(O) 2 Cores with Enhanced Oxidative Reactivity. J Am Chem Soc 2017; 139:3186-3195. [PMID: 28195739 PMCID: PMC5532877 DOI: 10.1021/jacs.6b12990] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Copper-dependent metalloenzymes are widespread throughout metabolic pathways, coupling the reduction of O2 with the oxidation of organic substrates. Small-molecule synthetic analogs are useful platforms to generate L/Cu/O2 species that reproduce the structural, spectroscopic, and reactive properties of some copper-/O2-dependent enzymes. Landmark studies have shown that the conversion between dicopper(II)-peroxo species (L2CuII2(O22-) either side-on peroxo, SP, or end-on trans-peroxo, TP) and dicopper(III)-bis(μ-oxo) (L2CuIII2(O2-)2: O) can be controlled through ligand design, reaction conditions (temperature, solvent, and counteranion), or substrate coordination. We recently published ( J. Am. Chem. Soc. 2012 , 134 , 8513 , DOI: 10.1021/ja300674m ) the crystal structure of an unusual SP species [(MeAN)2CuII2(O22-)]2+ (SPMeAN, MeAN: N-methyl-N,N-bis[3-(dimethylamino)propyl]amine) that featured an elongated O-O bond but did not lead to O-O cleavage or reactivity toward external substrates. Herein, we report that SPMeAN can be activated to generate OMeAN and perform the oxidation of external substrates by two complementary strategies: (i) coordination of substituted sodium phenolates to form the substrate-bound OMeAN-RPhO- species that leads to ortho-hydroxylation in a tyrosinase-like fashion and (ii) addition of stoichiometric amounts (1 or 2 equiv) of Lewis acids (LA's) to form an unprecedented series of O-type species (OMeAN-LA) able to oxidize C-H and O-H bonds. Spectroscopic, computational, and mechanistic studies emphasize the unique plasticity of the SPMeAN core, which combines the assembly of exogenous reagents in the primary (phenolates) and secondary (Lewis acids association to the MeAN ligand) coordination spheres with O-O cleavage. These findings are reminiscent of the strategy followed by several metalloproteins and highlight the possible implication of O-type species in copper-/dioxygen-dependent enzymes such as tyrosinase (Ty) and particulate methane monooxygenase (pMMO).
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Affiliation(s)
- Isaac Garcia-Bosch
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275, United States
| | - Ryan E. Cowley
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Daniel E. Díaz
- Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Ryan L. Peterson
- Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Edward I. Solomon
- Department of Chemistry, Stanford University, Stanford, California 94305, United States
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K- and L-edge X-ray Absorption Spectroscopy (XAS) and Resonant Inelastic X-ray Scattering (RIXS) Determination of Differential Orbital Covalency (DOC) of Transition Metal Sites. Coord Chem Rev 2017; 345:182-208. [PMID: 28970624 DOI: 10.1016/j.ccr.2017.02.004] [Citation(s) in RCA: 128] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Continual advancements in the development of synchrotron radiation sources have resulted in X-ray based spectroscopic techniques capable of probing the electronic and structural properties of numerous systems. This review gives an overview of the application of metal K-edge and L-edge X-ray absorption spectroscopy (XAS), as well as K resonant inelastic X-ray scattering (RIXS), to the study of electronic structure in transition metal sites with emphasis on experimentally quantifying 3d orbital covalency. The specific sensitivities of K-edge XAS, L-edge XAS, and RIXS are discussed emphasizing the complementary nature of the methods. L-edge XAS and RIXS are sensitive to mixing between 3d orbitals and ligand valence orbitals, and to the differential orbital covalency (DOC), that is, the difference in the covalencies for different symmetry sets of the d orbitals. Both L-edge XAS and RIXS are highly sensitive to and enable separation of and donor bonding and back bonding contributions to bonding. Applying ligand field multiplet simulations, including charge transfer via valence bond configuration interactions, DOC can be obtained for direct comparison with density functional theory calculations and to understand chemical trends. The application of RIXS as a probe of frontier molecular orbitals in a heme enzyme demonstrates the potential of this method for the study of metal sites in highly covalent coordination sites in bioinorganic chemistry.
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Elwell CE, Gagnon NL, Neisen BD, Dhar D, Spaeth AD, Yee GM, Tolman WB. Copper-Oxygen Complexes Revisited: Structures, Spectroscopy, and Reactivity. Chem Rev 2017; 117:2059-2107. [PMID: 28103018 PMCID: PMC5963733 DOI: 10.1021/acs.chemrev.6b00636] [Citation(s) in RCA: 465] [Impact Index Per Article: 58.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A longstanding research goal has been to understand the nature and role of copper-oxygen intermediates within copper-containing enzymes and abiological catalysts. Synthetic chemistry has played a pivotal role in highlighting the viability of proposed intermediates and expanding the library of known copper-oxygen cores. In addition to the number of new complexes that have been synthesized since the previous reviews on this topic in this journal (Mirica, L. M.; Ottenwaelder, X.; Stack, T. D. P. Chem. Rev. 2004, 104, 1013-1046 and Lewis, E. A.; Tolman, W. B. Chem. Rev. 2004, 104, 1047-1076), the field has seen significant expansion in the (1) range of cores synthesized and characterized, (2) amount of mechanistic work performed, particularly in the area of organic substrate oxidation, and (3) use of computational methods for both the corroboration and prediction of proposed intermediates. The scope of this review has been limited to well-characterized examples of copper-oxygen species but seeks to provide a thorough picture of the spectroscopic characteristics and reactivity trends of the copper-oxygen cores discussed.
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Affiliation(s)
- Courtney E Elwell
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
| | - Nicole L Gagnon
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
| | - Benjamin D Neisen
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
| | - Debanjan Dhar
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
| | - Andrew D Spaeth
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
| | - Gereon M Yee
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
| | - William B Tolman
- Department of Chemistry, Center for Metals in Biocatalysis, University of Minnesota , 207 Pleasant St. SE, Minneapolis, Minnesota 55455, United States
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Deville C, McKee V, McKenzie CJ. Copper-promoted methylene C–H oxidation to a ketone derivative by O2. Dalton Trans 2017; 46:709-719. [DOI: 10.1039/c6dt03349k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The oxime-dipyridyl ligand on a copper complex is slowly oxygenated at the benzylic C–H bond in air.
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Affiliation(s)
- Claire Deville
- Department of Physics
- Chemistry and Pharmacy
- University of Southern Denmark
- 5230 Odense M
- Denmark
| | - Vickie McKee
- Department of Physics
- Chemistry and Pharmacy
- University of Southern Denmark
- 5230 Odense M
- Denmark
| | - Christine J. McKenzie
- Department of Physics
- Chemistry and Pharmacy
- University of Southern Denmark
- 5230 Odense M
- Denmark
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Iwasaki M, Iglesia E. Mechanistic assessments of NO oxidation turnover rates and active site densities on WO3-promoted CeO2 catalysts. J Catal 2016. [DOI: 10.1016/j.jcat.2016.07.011] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Li ST, Braun-Cula B, Hoof S, Dürr M, Ivanović-Burmazović I, Limberg C. Ligands with Two Different Binding Sites and O2Reactivity of their Copper(I) Complexes. Eur J Inorg Chem 2016. [DOI: 10.1002/ejic.201600420] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Sin Ting Li
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
| | - Beatrice Braun-Cula
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
| | - Santina Hoof
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
| | - Maximilian Dürr
- Universität Erlangen-Nürnberg; Lehrstuhl für Bioanorganische Chemie; Egerlandstraße 1 91058 Erlangen Germany
| | - Ivana Ivanović-Burmazović
- Universität Erlangen-Nürnberg; Lehrstuhl für Bioanorganische Chemie; Egerlandstraße 1 91058 Erlangen Germany
| | - Christian Limberg
- Institut für Chemie; Humboldt-Universität zu Berlin; Brook-Taylor-Str. 2 12489 Berlin Germany
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40
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Chiang L, Keown W, Citek C, Wasinger EC, Stack TDP. Simplest Monodentate Imidazole Stabilization of the oxy-Tyrosinase Cu2 O2 Core: Phenolate Hydroxylation through a Cu(III) Intermediate. Angew Chem Int Ed Engl 2016; 55:10453-7. [PMID: 27440390 DOI: 10.1002/anie.201605159] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2016] [Revised: 06/30/2016] [Indexed: 11/09/2022]
Abstract
Tyrosinases are ubiquitous binuclear copper enzymes that oxygenate to Cu(II) 2 O2 cores bonded by three histidine Nτ-imidazoles per Cu center. Synthetic monodentate imidazole-bonded Cu(II) 2 O2 species self-assemble in a near quantitative manner at -125 °C, but Nπ-ligation has been required. Herein, we disclose the syntheses and reactivity of three Nτ-imidazole bonded Cu(II) 2 O2 species at solution temperatures of -145 °C, which was achieved using a eutectic mixture of THF and 2-MeTHF. The addition of anionic phenolates affords a Cu(III) 2 O2 species, where the bonded phenolates hydroxylate to catecholates in high yields. Similar Cu(III) 2 O2 intermediates are not observed using Nπ-bonded Cu(II) 2 O2 species, hinting that Nτ-imidazole ligation, conserved in all characterized Ty, has functional advantage beyond active-site flexibility. Substrate accessibility to the oxygenated Cu2 O2 core and stabilization of a high oxidation state of the copper centers are suggested from these minimalistic models.
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Affiliation(s)
- Linus Chiang
- Department of Chemistry, Stanford University, Stanford, CA, 94305, USA
| | - William Keown
- Department of Chemistry, Stanford University, Stanford, CA, 94305, USA
| | - Cooper Citek
- Department of Chemistry, Stanford University, Stanford, CA, 94305, USA
| | - Erik C Wasinger
- Department Chemistry and Biochemistry, California State University, Chico, CA, 95929, USA
| | - T Daniel P Stack
- Department of Chemistry, Stanford University, Stanford, CA, 94305, USA.
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41
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Chiang L, Keown W, Citek C, Wasinger EC, Stack TDP. Simplest Monodentate Imidazole Stabilization of the oxy‐Tyrosinase Cu
2
O
2
Core: Phenolate Hydroxylation through a Cu
III
Intermediate. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201605159] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Linus Chiang
- Department of Chemistry Stanford University Stanford CA 94305 USA
| | - William Keown
- Department of Chemistry Stanford University Stanford CA 94305 USA
| | - Cooper Citek
- Department of Chemistry Stanford University Stanford CA 94305 USA
| | - Erik C. Wasinger
- Department Chemistry and Biochemistry California State University Chico CA 95929 USA
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42
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Itoyama S, Doitomi K, Kamachi T, Shiota Y, Yoshizawa K. Possible Peroxo State of the Dicopper Site of Particulate Methane Monooxygenase from Combined Quantum Mechanics and Molecular Mechanics Calculations. Inorg Chem 2016; 55:2771-5. [DOI: 10.1021/acs.inorgchem.5b02603] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Shuhei Itoyama
- Institute
for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0395, Japan
| | - Kazuki Doitomi
- Institute
for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0395, Japan
| | - Takashi Kamachi
- Institute
for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0395, Japan
| | - Yoshihito Shiota
- Institute
for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0395, Japan
| | - Kazunari Yoshizawa
- Institute
for Materials Chemistry and Engineering, Kyushu University, Fukuoka 819-0395, Japan
- Elements
Strategy Initiative for Catalysts and Batteries, Kyoto University, Kyoto 615-8245, Japan
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43
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Karahalis GJ, Thangavel A, Chica B, Bacsa J, Dyer RB, Scarborough CC. Synthesis and Catalytic Reactivity of a Dicopper(II) μ-η2:η2-Peroxo Species Supported by 1,4,7-Tri-tert-butyl-1,4,7-triazacyclononane. Inorg Chem 2016; 55:1102-7. [DOI: 10.1021/acs.inorgchem.5b02205] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gregory J. Karahalis
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Arumugam Thangavel
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - Bryant Chica
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - John Bacsa
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
| | - R. Brian Dyer
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, United States
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44
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Saracini C, Ohkubo K, Suenobu T, Meyer GJ, Karlin KD, Fukuzumi S. Laser-Induced Dynamics of Peroxodicopper(II) Complexes Vary with the Ligand Architecture. One-Photon Two-Electron O2 Ejection and Formation of Mixed-Valent Cu(I)Cu(II)-Superoxide Intermediates. J Am Chem Soc 2015; 137:15865-74. [PMID: 26651492 DOI: 10.1021/jacs.5b10177] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Photoexcitation of end-on trans-μ-1,2-peroxodicopper(II) complex [(tmpa)2Cu(II)2(O2)](2+) (1) (λmax = 525 and 600 nm) and side-on μ-η(2):η(2)-peroxodicopper(II) complexes [(N5)Cu(II)2(O2)](2+) (2) and [(N3)Cu(II)2(O2)](2+) (3) at -80 °C in acetone led to one-photon two-electron peroxide-to-dioxygen oxidation chemistry (O2(2-) + hν → O2 + 2e(-)). Interestingly, light excitation of 2 and 3 (having side-on μ-η(2):η(2)-peroxo ligation) led to release of dioxygen, while photoexcitation of 1 (having an end-on trans-1,2-peroxo geometry) did not, even though spectroscopic studies revealed that both reactions proceeded through previously unknown mixed-valent superoxide species: [Cu(II)(O2(•-))Cu(I)](2+) (λmax = 685-740 nm). For 1, this intermediate underwent further fast intramolecular electron transfer to yield an "O2-caged" dicopper(I) adduct, Cu(I)2-O2, and a barrierless stepwise back electron transfer to regenerate 1 occurred. Femtosecond laser excitation of 2 and 3 under the same conditions still led to [Cu(II)(O2(•-))Cu(I)](2+) intermediates that, instead, underwent O2 release with a quantum yield of 0.14 ± 0.1 for 3. Such remarkable differences in reaction pathways likely result from the well-known ligand-derived stability of 2 and 3 vs 1 indicated by ligand-Cu(II/I) redox potentials; (N5)Cu(I) and (N3)Cu(I) complexes are far more stable than (tmpa)Cu(I) species. The fast Cu(I)2/O2 rebinding kinetics was also measured after photoexcitation of 2 and 3, with the results closely tracking those known for the dicopper proteins hemocyanin and tyrosinase, for which the synthetic dicopper(I) precursors [(N5)Cu(I)2](2+) and [(N3)Cu(I)2](2+) and their dioxygen adducts serve as models. The biological relevance of the present findings is discussed, including the potential impact on the solar water splitting process.
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Affiliation(s)
- Claudio Saracini
- Department of Chemistry, The Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Kei Ohkubo
- Department of Material and Life Science, Graduate School of Engineering, Osaka University, ALCA and SENTAN, Japan Science and Technology Agency (JST) , Suita, Osaka 565-0871, Japan.,Department of Chemistry and Nano Science, Ewha Womans University , Seoul 120-750, Korea
| | - Tomoyoshi Suenobu
- Department of Material and Life Science, Graduate School of Engineering, Osaka University, ALCA and SENTAN, Japan Science and Technology Agency (JST) , Suita, Osaka 565-0871, Japan
| | - Gerald J Meyer
- Department of Chemistry, The Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Kenneth D Karlin
- Department of Chemistry, The Johns Hopkins University , Baltimore, Maryland 21218, United States
| | - Shunichi Fukuzumi
- Department of Material and Life Science, Graduate School of Engineering, Osaka University, ALCA and SENTAN, Japan Science and Technology Agency (JST) , Suita, Osaka 565-0871, Japan.,Department of Chemistry and Nano Science, Ewha Womans University , Seoul 120-750, Korea.,Faculty of Science and Engineering, Meijo University, ALCA and SENTAN, Japan Science and Technology Agency (JST) , Nagoya, Aichi 468-0073, Japan
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45
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Wilfer C, Liebhäuser P, Hoffmann A, Erdmann H, Grossmann O, Runtsch L, Paffenholz E, Schepper R, Dick R, Bauer M, Dürr M, Ivanović-Burmazović I, Herres-Pawlis S. Efficient Biomimetic Hydroxylation Catalysis with a Bis(pyrazolyl)imidazolylmethane Copper Peroxide Complex. Chemistry 2015; 21:17639-49. [PMID: 26458073 DOI: 10.1002/chem.201501685] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Indexed: 11/08/2022]
Abstract
Bis(pyrazolyl)methane ligands are excellent components of model complexes used to investigate the activity of the enzyme tyrosinase. Combining the N donors 3-tert-butylpyrazole and 1-methylimidazole results in a ligand that is capable of stabilising a (μ-η(2) :η(2) )-dicopper(II) core that resembles the active centre of tyrosinase. UV/Vis spectroscopy shows blueshifted UV bands in comparison to other known peroxo complexes, due to donor competition from different ligand substituents. This effect was investigated with the help of theoretical calculations, including DFT and natural transition orbital analysis. The peroxo complex acts as a catalyst capable of hydroxylating a variety of phenols by using oxygen. Catalytic conversion with the non-biological phenolic substrate 8-hydroxyquinoline resulted in remarkable turnover numbers. In stoichiometric reactions, substrate-binding kinetics was observed and the intrinsic hydroxylation constant, kox , was determined for five phenolates. It was found to be the fastest hydroxylation model system determined so far, reaching almost biological activity. Furthermore, Hammett analysis proved the electrophilic character of the reaction. This sheds light on the subtle role of donor strength and its influence on hydroxylation activity.
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Affiliation(s)
- Claudia Wilfer
- Department für Chemie und Pharmazie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München (Germany).,Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074 Aachen (Germany)
| | - Patricia Liebhäuser
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074 Aachen (Germany)
| | - Alexander Hoffmann
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074 Aachen (Germany)
| | - Hannes Erdmann
- Department für Chemie und Pharmazie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München (Germany)
| | - Oleg Grossmann
- Department für Chemie und Pharmazie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München (Germany)
| | - Leander Runtsch
- Department für Chemie und Pharmazie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München (Germany)
| | - Eva Paffenholz
- Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074 Aachen (Germany)
| | - Rahel Schepper
- Department Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn (Germany)
| | - Regina Dick
- Department Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn (Germany)
| | - Matthias Bauer
- Department Chemie, Universität Paderborn, Warburger Straße 100, 33098 Paderborn (Germany)
| | - Maximilian Dürr
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen (Germany)
| | - Ivana Ivanović-Burmazović
- Department Chemie und Pharmazie, Friedrich-Alexander-Universität Erlangen-Nürnberg, Egerlandstraße 1, 91058 Erlangen (Germany)
| | - Sonja Herres-Pawlis
- Department für Chemie und Pharmazie, Ludwig-Maximilians-Universität München, Butenandtstraße 5-13, 81377 München (Germany). .,Institut für Anorganische Chemie, Rheinisch-Westfälische Technische Hochschule Aachen, Landoltweg 1, 52074 Aachen (Germany).
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46
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Serrano-Plana J, Garcia-Bosch I, Company A, Costas M. Structural and reactivity models for copper oxygenases: cooperative effects and novel reactivities. Acc Chem Res 2015. [PMID: 26207342 DOI: 10.1021/acs.accounts.5b00187] [Citation(s) in RCA: 93] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
Dioxygen is widely used in nature as oxidant. Nature itself has served as inspiration to use O2 in chemical synthesis. However, the use of dioxygen as an oxidant is not straightforward. Its triplet ground-state electronic structure makes it unreactive toward most organic substrates. In natural systems, metalloenzymes activate O2 by reducing it to more reactive peroxide (O2(2-)) or superoxide (O2(-)) forms. Over the years, the development of model systems containing transition metals has become a convenient tool for unravelling O2-activation mechanistic aspects and reproducing the oxidative activity of enzymes. Several copper-based systems have been developed within this area. Tyrosinase is a copper-based O2-activating enzyme, whose structure and reactivity have been widely studied, and that serves as a paradigm for O2 activation at a dimetal site. It contains a dicopper center in its active site, and it catalyzes the regioselective ortho-hydroxylation of phenols to catechols and further oxidation to quinones. This represents an important step in melanin biosynthesis and it is mediated by a dicopper(II) side-on peroxo intermediate species. In the present accounts, our research in the field of copper models for oxygen activation is collected. We have developed m-xylyl linked dicopper systems that mimick structural and reactivity aspects of tyrosinase. Synergistic cooperation of the two copper(I) centers results in O2 binding and formation of bis(μ-oxo)dicopper(III) cores. These in turn bind and ortho-hydroxylate phenolates via an electrophilic attack of the oxo ligand over the arene. Interestingly the bis(μ-oxo)dicopper(III) cores can also engage in ortho-hydroxylation-defluorination of deprotonated 2-fluorophenols, substrates that are well-known enzyme inhibitors. Analysis of Cu2O2 species with different binding modes show that only the bis(μ-oxo)dicopper(III) cores can mediate the reaction. Finally, the use of unsymmetric systems for oxygen activation is a field that still remains rather unexplored. We envision that the unsymmetry might infere interesting new reactivities. We contributed to this topic with the development of an unsymmetric ligand (m-XYL(N3N4)), whose dicuprous complex reacts with O2 and forms a trans-peroxo dicopper(II) species that showed a markedly different reactivity compared to a symmetric trans-peroxo dicopper(II) analog. Nucleophilic reactivity is observed for the unsymmetric trans-peroxo dicopper(II) species against electrophilies such as H(+), CO2 and aldehydes, and neither oxygen atom transfer nor hydrogen abstraction is observed when reacting with oxygen atom acceptors (triphenyl phosphine, sulfides) and substrates with weak C-H bonds. Instead, electrophilic monooxygenase-like ortho-hydroxylation reactivity is described for these unsymmetric species upon reaction with phenolates. Finally, by using a second dinucleating unsymmetric ligand (L(N3N4)), we have described copper(I) containing heterodimetallic systems and explored their O2 binding properties. Site specific metalation led to the generation of dimeric heterometallic M'CuO2CuM' species from intermolecular O2 binding at copper sites.
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Affiliation(s)
- Joan Serrano-Plana
- Grup
de Química Bioinorgànica, Supramolecular i Catàlisi
(QBIS-CAT), Institut de Química Computacional i Catàlisi
(IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
| | - Isaac Garcia-Bosch
- Grup
de Química Bioinorgànica, Supramolecular i Catàlisi
(QBIS-CAT), Institut de Química Computacional i Catàlisi
(IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
- Department of Chemistry, Southern Methodist University, Dallas, Texas 75275-0314, United States
| | - Anna Company
- Grup
de Química Bioinorgànica, Supramolecular i Catàlisi
(QBIS-CAT), Institut de Química Computacional i Catàlisi
(IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
| | - Miquel Costas
- Grup
de Química Bioinorgànica, Supramolecular i Catàlisi
(QBIS-CAT), Institut de Química Computacional i Catàlisi
(IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
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47
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Rees JA, Martin-Diaconescu V, Kovacs JA, DeBeer S. X-ray Absorption and Emission Study of Dioxygen Activation by a Small-Molecule Manganese Complex. Inorg Chem 2015; 54:6410-22. [PMID: 26061165 PMCID: PMC4494871 DOI: 10.1021/acs.inorgchem.5b00699] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Manganese K-edge X-ray absorption (XAS) and Kβ emission (XES) spectroscopies were used to investigate the factors contributing to O-O bond activation in a small-molecule system. The recent structural characterization of a metastable peroxo-bridged dimeric Mn(III)2 complex derived from dioxygen has provided the first opportunity to obtain X-ray spectroscopic data on this type of species. Ground state and time-dependent density functional theory calculations have provided further insight into the nature of the transitions in XAS pre-edge and valence-to-core (VtC) XES spectral regions. An experimentally validated electronic structure description has also enabled the determination of structural and electronic factors that govern peroxo bond activation, and have allowed us to propose both a rationale for the metastability of this unique compound, as well as potential future ligand designs which may further promote or inhibit O-O bond scission. Finally, we have explored the potential of VtC XES as an element-selective probe of both the coordination mode and degree of activation of peroxomanganese adducts. The comparison of these results to a recent VtC XES study of iron-mediated dintrogen activation helps to illustrate the factors that may determine the success of this spectroscopic method for future studies of small-molecule activation at transition metal sites.
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Affiliation(s)
- Julian A. Rees
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr D-45470, Germany
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195-1700, United States
| | - Vlad Martin-Diaconescu
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr D-45470, Germany
| | - Julie A. Kovacs
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195-1700, United States
| | - Serena DeBeer
- Max-Planck-Institut für Chemische Energiekonversion, Stiftstrasse 34-36, Mülheim an der Ruhr D-45470, Germany
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853, United States
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48
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Serrano-Plana J, Costas M, Company A. Building Complexity in O2-Binding Copper Complexes. Site-Selective Metalation and Intermolecular O2-Binding at Dicopper and Heterometallic Complexes Derived from an Unsymmetric Ligand. Inorg Chem 2014; 53:12929-38. [DOI: 10.1021/ic501951f] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Joan Serrano-Plana
- Grup de Química Bioinorgànica, Supramolecular
i Catàlisi (QBIS-CAT), Institut de Química Computacional
i Catàlisi (IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
| | - Miquel Costas
- Grup de Química Bioinorgànica, Supramolecular
i Catàlisi (QBIS-CAT), Institut de Química Computacional
i Catàlisi (IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
| | - Anna Company
- Grup de Química Bioinorgànica, Supramolecular
i Catàlisi (QBIS-CAT), Institut de Química Computacional
i Catàlisi (IQCC), Departament de Química, Universitat de Girona, Campus Montilivi, E17071 Girona, Catalonia, Spain
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49
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Walli A, Dechert S, Bauer M, Demeshko S, Meyer F. BOX Ligands in Biomimetic Copper-Mediated Dioxygen Activation: A Hemocyanin Model. Eur J Inorg Chem 2014. [DOI: 10.1002/ejic.201402378] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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50
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McGrail BT, Pianowski LS, Burns PC. Photochemical Water Oxidation and Origin of Nonaqueous Uranyl Peroxide Complexes. J Am Chem Soc 2014; 136:4797-800. [DOI: 10.1021/ja502425t] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Brendan T. McGrail
- Department of Civil & Environmental Engineering & Earth Sciences and ‡Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Laura S. Pianowski
- Department of Civil & Environmental Engineering & Earth Sciences and ‡Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
| | - Peter C. Burns
- Department of Civil & Environmental Engineering & Earth Sciences and ‡Department of Chemistry & Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556, United States
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