1
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Gray VP, Amelung CD, Duti IJ, Laudermilch EG, Letteri RA, Lampe KJ. Biomaterials via peptide assembly: Design, characterization, and application in tissue engineering. Acta Biomater 2022; 140:43-75. [PMID: 34710626 PMCID: PMC8829437 DOI: 10.1016/j.actbio.2021.10.030] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Revised: 09/23/2021] [Accepted: 10/20/2021] [Indexed: 12/16/2022]
Abstract
A core challenge in biomaterials, with both fundamental significance and technological relevance, concerns the rational design of bioactive microenvironments. Designed properly, peptides can undergo supramolecular assembly into dynamic, physical hydrogels that mimic the mechanical, topological, and biochemical features of native tissue microenvironments. The relatively facile, inexpensive, and automatable preparation of peptides, coupled with low batch-to-batch variability, motivates the expanded use of assembling peptide hydrogels for biomedical applications. Integral to realizing dynamic peptide assemblies as functional biomaterials for tissue engineering is an understanding of the molecular and macroscopic features that govern assembly, morphology, and biological interactions. In this review, we first discuss the design of assembling peptides, including primary structure (sequence), secondary structure (e.g., α-helix and β-sheets), and molecular interactions that facilitate assembly into multiscale materials with desired properties. Next, we describe characterization tools for elucidating molecular structure and interactions, morphology, bulk properties, and biological functionality. Understanding of these characterization methods enables researchers to access a variety of approaches in this ever-expanding field. Finally, we discuss the biological properties and applications of peptide-based biomaterials for engineering several important tissues. By connecting molecular features and mechanisms of assembling peptides to the material and biological properties, we aim to guide the design and characterization of peptide-based biomaterials for tissue engineering and regenerative medicine. STATEMENT OF SIGNIFICANCE: Engineering peptide-based biomaterials that mimic the topological and mechanical properties of natural extracellular matrices provide excellent opportunities to direct cell behavior for regenerative medicine and tissue engineering. Here we review the molecular-scale features of assembling peptides that result in biomaterials that exhibit a variety of relevant extracellular matrix-mimetic properties and promote beneficial cell-biomaterial interactions. Aiming to inspire and guide researchers approaching this challenge from both the peptide biomaterial design and tissue engineering perspectives, we also present characterization tools for understanding the connection between peptide structure and properties and highlight the use of peptide-based biomaterials in neural, orthopedic, cardiac, muscular, and immune engineering applications.
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Affiliation(s)
- Vincent P Gray
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Connor D Amelung
- Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Israt Jahan Duti
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Emma G Laudermilch
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States
| | - Rachel A Letteri
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States.
| | - Kyle J Lampe
- Department of Chemical Engineering, University of Virginia, Charlottesville, VA, 22903, United States; Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, 22903, United States.
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2
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Jung BT, Lim M, Jung K, Li M, Dong H, Dube N, Xu T. Designing sub-20 nm self-assembled nanocarriers for small molecule delivery: Interplay among structural geometry, assembly energetics, and cargo release kinetics. J Control Release 2021; 329:538-551. [PMID: 32971202 DOI: 10.1016/j.jconrel.2020.09.037] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Revised: 09/17/2020] [Accepted: 09/18/2020] [Indexed: 02/07/2023]
Abstract
Biological constraints in diseased tissues have motivated the need for small nanocarriers (10-30 nm) to achieve sufficient vascular extravasation and pervasive tumor penetration. This particle size limit is only an order of magnitude larger than small molecules, such that cargo loading is better described by co-assembly processes rather than simple encapsulation. Understanding the structural, kinetic, and energetic contributions of carrier-cargo co-assembly is thus critical to achieve molecular-level control towards predictable in vivo behavior. These interconnected set of properties were systematically examined using sub-20 nm self-assembled nanocarriers known as three-helix micelles (3HM). Both hydrophobicity and the "geometric packing parameter" dictate small molecule compatibility with 3HM's alkyl tail core. Planar obelisk-like apomorphine and doxorubicin (DOX) molecules intercalated well within the 3HM core and near the core-shell interface, forming an integral component to the co-assembly, as corroborated by small-angle X-ray and neutron-scattering structural studies. DOX promoted crystalline alkyl tail ordering, which significantly increased (+63%) the activation energy of 3HM subunit exchange. Subsequently, 3HM-DOX displayed slow-release kinetics (t1/2 = 40 h) at physiological temperatures, with ~50× greater cargo preference for the micelle core as described by two drug partitioning coefficients (micellar core/shell Kp1 ~ 24, and shell/bulk solvent Kp2 ~ 2). The geometric and energetic insights between nanocarrier and their small molecule cargos developed here will aid in broader efforts to deconvolute the interconnected properties of carrier-drug co-assemblies. Adding this knowledge to pharmacological and immunological explorations will expand our understanding of nanomedicine behavior throughout all the physical and in vivo processes they are intended to encounter.
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Affiliation(s)
- Benson T Jung
- Department of Materials Science and Engineering, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States
| | - Marc Lim
- UCB-UCSF Graduate Program in Bioengineering, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States
| | - Katherine Jung
- Department of Chemistry, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States
| | - Michael Li
- Department of Chemistry, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States
| | - He Dong
- Department of Materials Science and Engineering, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States
| | - Nikhil Dube
- Department of Materials Science and Engineering, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States
| | - Ting Xu
- Department of Materials Science and Engineering, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States; Department of Chemistry, University of California, Berkeley, 210 Hearst Memorial Mining Building, Berkeley, CA 94720, United States; Material Science Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd, Berkeley, CA 94720, United States.
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3
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Jung BT, Jung K, Lim M, Li M, Santos R, Ozawa T, Xu T. Design of 18 nm Doxorubicin-Loaded 3-Helix Micelles: Cellular Uptake and Cytotoxicity in Patient-Derived GBM6 Cells. ACS Biomater Sci Eng 2020; 7:196-206. [PMID: 33338381 DOI: 10.1021/acsbiomaterials.0c01639] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The fate of nanocarrier materials at the cellular level constitutes a critical checkpoint in the development of effective nanomedicines, determining whether tissue level accumulation results in therapeutic benefit. The cytotoxicity and cell internalization of ∼18 nm 3-helix micelle (3HM) loaded with doxorubicin (DOX) were analyzed in patient-derived glioblastoma (GBM) cells in vitro. The half-maximal inhibitory concentration (IC50) of 3HM-DOX increased to 6.2 μg/mL from <0.5 μg/mL for free DOX in patient-derived GBM6 cells, to 15.0 μg/mL from 6.5 μg/mL in U87MG cells, and to 21.5 μg/mL from ∼0.5 μg/mL in LN229 cells. Modeling analysis of previous 3HM biodistribution results predicts that these cytotoxic concentrations are achievable with intravenous injection in rodent GBM models. 3HM-DOX formulations were internalized intact and underwent intracellular trafficking distinct from free DOX. 3HM was quantified to have an internalization half-life of 12.6 h in GBM6 cells, significantly longer than that reported for some liposome and polymer systems. 3HM was found to traffic through active endocytic processes, with clathrin-mediated endocytosis being the most involved of the pathways studied. Inhibition studies suggest substantial involvement of receptor recognition in 3HM uptake. As the 3HM surface is PEG-ylated with no targeting functionalities, protein corona-cell surface interactions, such as the apolipoprotein-low-density lipoprotein receptor, are expected to initiate internalization. The present work gives insights into the cytotoxicity, pharmacodynamics, and cellular interactions of 3HM and 3HM-DOX relevant for ongoing preclinical studies. This work also contributes to efforts to develop predictive mathematical models tracking the accumulation and biodistribution kinetics at a systemic level.
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Affiliation(s)
- Benson T Jung
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Katherine Jung
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Marc Lim
- UCB-UCSF Graduate Program in Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Michael Li
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
| | - Raquel Santos
- Department of Neurological Surgery, University of California, San Francisco, San Francisco, California 94158, United States
| | - Tomoko Ozawa
- Department of Neurological Surgery, University of California, San Francisco, San Francisco, California 94158, United States
| | - Ting Xu
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, California 94720, United States.,Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.,Material Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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4
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Liu K, Wang X, Li-Blatter X, Wolf M, Hunziker P. Systematic and Quantitative Structure-Property Relationships of Polymeric Medical Nanomaterials: From Systematic Synthesis and Characterization to Computer Modeling and Nano-Bio Interaction and Toxicity. ACS APPLIED BIO MATERIALS 2020; 3:6919-6931. [PMID: 35019353 DOI: 10.1021/acsabm.0c00808] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Nanomaterials allow designing targeted therapies, facilitate molecular diagnostics, and are therefore enabling platforms for personalized medicine. A systematic science and a predictive understanding of molecular/supramolecular structure relationships and nanoparticle structure/biological property relationships are needed for rational design and clinical progress but are hampered by the anecdotal nature, nonsystematic and nonrepresentative nanomaterial assortment, and oligo-disciplinary approach of many publications. Here, we find that a systematic and comprehensive multidisciplinary approach to production and exploration of molecular-structure/nanostructure relationship and nano-bio structure/function relationship of medical nanomaterials can be achieved by combining systematic chemical synthesis, thorough physicochemical analysis, computer modeling, and biological experiments, as shown in a nanomaterial family of amphiphilic, micelle-forming oxazoline/siloxane block copolymers suited for the clinical application. This comprehensive interdisciplinary approach leads to improved understanding of nanomaterial structures, allows good insights into binding modes for the nanomaterial protein corona, induces the design of minimal cell-binding materials, and yields rational strategies to avoid toxicity. Thus, this work contributes to a systematic and scientific basis for rational design of medical nanomaterials.
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Affiliation(s)
- Kegang Liu
- Nanomedicine Research Lab CLINAM, University of Basel, University Hospital Basel, Bernoullistrasse 20, CH-4056 Basel, Switzerland
| | - Xueya Wang
- Nanomedicine Research Lab CLINAM, University of Basel, University Hospital Basel, Bernoullistrasse 20, CH-4056 Basel, Switzerland
| | - Xiaochun Li-Blatter
- Biozentrum, University of Basel, Klingelbergstrasse 70, 4056 Basel, Switzerland
| | - Marc Wolf
- Nanomedicine Research Lab CLINAM, University of Basel, University Hospital Basel, Bernoullistrasse 20, CH-4056 Basel, Switzerland
| | - Patrick Hunziker
- Nanomedicine Research Lab CLINAM, University of Basel, University Hospital Basel, Bernoullistrasse 20, CH-4056 Basel, Switzerland.,Intensive Care Clinic, University Hospital Basel, Petersgraben 4, 4031 Basel, Switzerland.,CLINAM Foundation for Nanomedicine, Alemannengasse, 4058 Basel, Switzerland
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5
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Lee H. Molecular Simulations of PEGylated Biomolecules, Liposomes, and Nanoparticles for Drug Delivery Applications. Pharmaceutics 2020; 12:E533. [PMID: 32531886 PMCID: PMC7355693 DOI: 10.3390/pharmaceutics12060533] [Citation(s) in RCA: 31] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2020] [Revised: 06/04/2020] [Accepted: 06/08/2020] [Indexed: 12/17/2022] Open
Abstract
Since the first polyethylene glycol (PEG)ylated protein was approved by the FDA in 1990, PEGylation has been successfully applied to develop drug delivery systems through experiments, but these experimental results are not always easy to interpret at the atomic level because of the limited resolution of experimental techniques. To determine the optimal size, structure, and density of PEG for drug delivery, the structure and dynamics of PEGylated drug carriers need to be understood close to the atomic scale, as can be done using molecular dynamics simulations, assuming that these simulations can be validated by successful comparisons to experiments. Starting with the development of all-atom and coarse-grained PEG models in 1990s, PEGylated drug carriers have been widely simulated. In particular, recent advances in computer performance and simulation methodologies have allowed for molecular simulations of large complexes of PEGylated drug carriers interacting with other molecules such as anticancer drugs, plasma proteins, membranes, and receptors, which makes it possible to interpret experimental observations at a nearly atomistic resolution, as well as help in the rational design of drug delivery systems for applications in nanomedicine. Here, simulation studies on the following PEGylated drug topics will be reviewed: proteins and peptides, liposomes, and nanoparticles such as dendrimers and carbon nanotubes.
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Affiliation(s)
- Hwankyu Lee
- Department of Chemical Engineering, Dankook University, Yongin 16890, Korea
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6
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Lim M, Dharmaraj V, Gong B, Jung BT, Xu T. Estimating Tumor Vascular Permeability of Nanoparticles Using an Accessible Diffusive Flux Model. ACS Biomater Sci Eng 2020; 6:2879-2892. [DOI: 10.1021/acsbiomaterials.9b01590] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Marc Lim
- UC Berkeley - UCSF Graduate Program in Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States
- Department of Bioengineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Vishnu Dharmaraj
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Boying Gong
- Department of Biostatistics, University of California, Berkeley, Berkeley, California 94720, United States
| | - Benson T. Jung
- Department of Materials Science & Engineering, University of California, Berkeley, Berkeley, California 94720, United States
| | - Ting Xu
- Department of Materials Science & Engineering, University of California, Berkeley, Berkeley, California 94720, United States
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
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7
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Frenkel-Pinter M, Samanta M, Ashkenasy G, Leman LJ. Prebiotic Peptides: Molecular Hubs in the Origin of Life. Chem Rev 2020; 120:4707-4765. [PMID: 32101414 DOI: 10.1021/acs.chemrev.9b00664] [Citation(s) in RCA: 148] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The fundamental roles that peptides and proteins play in today's biology makes it almost indisputable that peptides were key players in the origin of life. Insofar as it is appropriate to extrapolate back from extant biology to the prebiotic world, one must acknowledge the critical importance that interconnected molecular networks, likely with peptides as key components, would have played in life's origin. In this review, we summarize chemical processes involving peptides that could have contributed to early chemical evolution, with an emphasis on molecular interactions between peptides and other classes of organic molecules. We first summarize mechanisms by which amino acids and similar building blocks could have been produced and elaborated into proto-peptides. Next, non-covalent interactions of peptides with other peptides as well as with nucleic acids, lipids, carbohydrates, metal ions, and aromatic molecules are discussed in relation to the possible roles of such interactions in chemical evolution of structure and function. Finally, we describe research involving structural alternatives to peptides and covalent adducts between amino acids/peptides and other classes of molecules. We propose that ample future breakthroughs in origin-of-life chemistry will stem from investigations of interconnected chemical systems in which synergistic interactions between different classes of molecules emerge.
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Affiliation(s)
- Moran Frenkel-Pinter
- NSF/NASA Center for Chemical Evolution, https://centerforchemicalevolution.com/.,School of Chemistry & Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States
| | - Mousumi Samanta
- Department of Chemistry, Ben-Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Gonen Ashkenasy
- Department of Chemistry, Ben-Gurion University of the Negev, Beer Sheva 84105, Israel
| | - Luke J Leman
- NSF/NASA Center for Chemical Evolution, https://centerforchemicalevolution.com/.,Department of Chemistry, The Scripps Research Institute, La Jolla, California 92037, United States
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8
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Xue Y, Jung BT, Xu T. Redox degradable 3‐helix micelles with tunable sensitivity. Pept Sci (Hoboken) 2019. [DOI: 10.1002/pep2.24117] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yi Xue
- Department of Materials Science and Engineering University of California Berkeley California
| | - Benson T. Jung
- Department of Materials Science and Engineering University of California Berkeley California
| | - Ting Xu
- Department of Materials Science and Engineering University of California Berkeley California
- Department of Chemistry University of California Berkeley California
- Tsinghua‐Berkeley‐Shenzhen Institute University of California Berkeley California
- Materials Science Division Lawrence Berkeley National Laboratory Berkeley California
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9
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Abstract
Self-assembled peptide nanostructures have been increasingly exploited as functional materials for applications in biomedicine and energy. The emergent properties of these nanomaterials determine the applications for which they can be exploited. It has recently been appreciated that nanomaterials composed of multicomponent coassembled peptides often display unique emergent properties that have the potential to dramatically expand the functional utility of peptide-based materials. This review presents recent efforts in the development of multicomponent peptide assemblies. The discussion includes multicomponent assemblies derived from short low molecular weight peptides, peptide amphiphiles, coiled coil peptides, collagen, and β-sheet peptides. The design, structure, emergent properties, and applications for these multicomponent assemblies are presented in order to illustrate the potential of these formulations as sophisticated next-generation bio-inspired materials.
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Affiliation(s)
- Danielle M Raymond
- Department of Chemistry, University of Rochester, Rochester, NY 14627-0216, USA.
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10
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Ma D, Keten S. Stable micelles based on a mixture of coiled-coils: the role of different oligomeric states. NANOSCALE 2018; 10:7589-7596. [PMID: 29637959 DOI: 10.1039/c7nr09695j] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Homomeric micelles with tunable size, shape and stability have been extensively studied for biomedical applications such as drug carriers. However, designing the local valency and self-assembled morphology of nanophase-separated multicomponent micelles with varied ligand binding possibilities remains challenging. Here, we present micelles self-assembled from amphiphilic peptide-PEG-lipid hybrid conjugates, where the peptides can be either a 3-helix or 4-helix coiled-coil. We demonstrate that the micelle size and sphericity can be controlled based on the coiled-coil oligomeric state. Using theory and coarse-grained dissipative particle dynamics (DPD) simulations in an explicit solvent simulation, we studied the distribution of 3-helix and 4-helix conjugates within the mixed micelles and observed self-organization into nanodomains within the mixed micelle. We discovered that the phase separation behavior is dictated by the geometry mismatch in the alkyl chain length from different coiled-coil oligomeric states. Our analyses of the self-assembly tendency and drug delivery potency of mixed micelles with controlled multivalency provide important insights into the assembly and formation of nanophase-separated micelles.
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Affiliation(s)
- Dan Ma
- Department of Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, USA.
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11
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Prusty DK, Adam V, Zadegan RM, Irsen S, Famulok M. Supramolecular aptamer nano-constructs for receptor-mediated targeting and light-triggered release of chemotherapeutics into cancer cells. Nat Commun 2018; 9:535. [PMID: 29416033 PMCID: PMC5803212 DOI: 10.1038/s41467-018-02929-2] [Citation(s) in RCA: 49] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Accepted: 01/09/2018] [Indexed: 12/01/2022] Open
Abstract
Platforms for targeted drug-delivery must simultaneously exhibit serum stability, efficient directed cell internalization, and triggered drug release. Here, using lipid-mediated self-assembly of aptamers, we combine multiple structural motifs into a single nanoconstruct that targets hepatocyte growth factor receptor (cMet). The nanocarrier consists of lipidated versions of a cMet-binding aptamer and a separate lipidated GC-rich DNA hairpin motif loaded with intercalated doxorubicin. Multiple 2',6'-dimethylazobenzene moieties are incorporated into the doxorubicin-binding motif to trigger the release of the chemotherapeutics by photoisomerization. The lipidated DNA scaffolds self-assemble into spherical hybrid-nanoconstructs that specifically bind cMet. The combined features of the nanocarriers increase serum nuclease resistance, favor their import into cells presumably mediated by endocytosis, and allow selective photo-release of the chemotherapeutic into the targeted cells. cMet-expressing H1838 tumor cells specifically internalize drug-loaded nanoconstructs, and subsequent UV exposure enhances cell mortality. This modular approach thus paves the way for novel classes of powerful aptamer-based therapeutics.
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Affiliation(s)
- Deepak K Prusty
- Life and Medical Sciences (LIMES) Institute, Chemical Biology & Medicinal Chemistry Unit, c/o Kekulé Institute of Organic Chemistry and Biochemistry, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
- Stiftung Caesar, Max-Planck-Fellowship Group Chemical Biology, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany
| | - Volker Adam
- Life and Medical Sciences (LIMES) Institute, Chemical Biology & Medicinal Chemistry Unit, c/o Kekulé Institute of Organic Chemistry and Biochemistry, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany
| | - Reza M Zadegan
- Nanoscale Materials & Device Group, Micron School of Materials Science and Engineering, Boise State University, Boise, USA
| | - Stephan Irsen
- Stiftung Caesar, Elektronenmikroskopie und Analytik, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany
| | - Michael Famulok
- Life and Medical Sciences (LIMES) Institute, Chemical Biology & Medicinal Chemistry Unit, c/o Kekulé Institute of Organic Chemistry and Biochemistry, Gerhard-Domagk-Strasse 1, 53121, Bonn, Germany.
- Stiftung Caesar, Max-Planck-Fellowship Group Chemical Biology, Ludwig-Erhard-Allee 2, 53175, Bonn, Germany.
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12
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Fabrication of self-assembling nanofibers with optimal cell uptake and therapeutic delivery efficacy. Bioact Mater 2017; 2:260-268. [PMID: 29744435 PMCID: PMC5935509 DOI: 10.1016/j.bioactmat.2017.09.001] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Revised: 09/12/2017] [Accepted: 09/15/2017] [Indexed: 12/14/2022] Open
Abstract
Effective strategies to fabricate finite organic nanoparticles and understanding their structure-dependent cell interaction is highly important for the development of long circulating nanocarriers in cancer therapy. In this contribution, we will capitalize on our recent development of finite supramolecular nanofibers based on the self-assembly of modularly designed cationic multidomain peptides (MDPs) and use them as a model system to investigate structure-dependent cell penetrating activity. MDPs self-assembled into nanofibers with high density of cationic charges at the fiber-solvent interface to interact with the cell membrane. However, despite the multivalent charge presentation, not all fibers led to high levels of membrane activity and cellular uptake. The flexibility of the cationic charge domains on self-assembled nanofibers plays a key role in effective membrane perturbation. Nanofibers were found to sacrifice their dimension, thermodynamic and kinetic stability for a more flexible charge domain in order to achieve effective membrane interaction. The increased membrane activity led to improved cell uptake of membrane-impermeable chemotherapeutics through membrane pore formation. In vitro cytotoxicity study showed co-administering of water-soluble doxorubicin with membrane-active peptide nanofibers dramatically reduced the IC50 by eight folds compared to drug alone. Through these detailed structure and activity studies, the acquired knowledge will provide important guidelines for the design of a variety of supramolecular cell penetrating nanomaterials not limited to peptide assembly which can be used to probe various complex biological processes.
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13
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Ang J, Ma D, Jung BT, Keten S, Xu T. Sub-20 nm Stable Micelles Based on a Mixture of Coiled-Coils: A Platform for Controlled Ligand Presentation. Biomacromolecules 2017; 18:3572-3580. [DOI: 10.1021/acs.biomac.7b00917] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- JooChuan Ang
- Department
of Materials Science and Engineering, University of California, Berkeley, California 94720, United States
| | - Dan Ma
- Department
of Civil and Environmental Engineering and Department of Mechanical
Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Benson T. Jung
- Department
of Materials Science and Engineering, University of California, Berkeley, California 94720, United States
| | - Sinan Keten
- Department
of Civil and Environmental Engineering and Department of Mechanical
Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Ting Xu
- Department
of Materials Science and Engineering, University of California, Berkeley, California 94720, United States
- Department
of Chemistry, University of California, Berkeley, California 94720, United States
- Material
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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14
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Ren Y, Baumgartner R, Fu H, van der Schoot P, Cheng J, Lin Y. Revisiting the Helical Cooperativity of Synthetic Polypeptides in Solution. Biomacromolecules 2017; 18:2324-2332. [PMID: 28715182 DOI: 10.1021/acs.biomac.7b00534] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Using synthetic polypeptides as a model system, the theories of helix-coil transition were developed into one of the most beautiful and fruitful subjects in macromolecular science. The classic models proposed by Schellman and Zimm-Bragg more than 50 years ago, differ in the assumption on whether the configuration of multiple helical sequences separated by random coil sections is allowed in a longer polypeptide chain. Zimm also calculated the critical chain lengths that facilitate such interrupted helices in different solvent conditions. The experimental validation of Zimm's prediction, however, was not carefully examined at that time. Herein, we synthesize a series of homopolypeptide samples with different lengths, to systematically examine their helix-coil transition and folding cooperativity in solution. We find that for longer chains, polypeptides do exist as interrupted helices with scattered coil sections even in helicogenic solvent conditions, as predicted in the Zimm-Bragg model. The critical chain lengths that facilitate such interrupted helices, however, are substantially smaller than Zimm's original estimation. The inaccuracy is in part due to an approximation that Zimm made in simplifying the calculation. But more importantly, we find there exist intramolecular interactions between different structural segments in the longer polypeptides, which are not considered in the classic helix-coil theories. As such, even the Zimm-Bragg model in its exact form cannot fully describe the transition behavior and folding cooperativity of longer polypeptides. The results suggest that long "all-helix" chains may be much less prevalent in solution than previously imagined, and a revised theory is required to accurately account for the helix-coil transition of the longer chains with potential "non-local" intramolecular interactions.
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Affiliation(s)
| | | | | | - Paul van der Schoot
- Department of Applied Physics, Eindhoven University of Technology , 5600 MB Eindhoven, The Netherlands
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15
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Affiliation(s)
| | | | | | - Ting Xu
- Material
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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16
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Ma D, DeBenedictis EP, Lund R, Keten S. Design of polymer conjugated 3-helix micelles as nanocarriers with tunable shapes. NANOSCALE 2016; 8:19334-19342. [PMID: 27841426 DOI: 10.1039/c6nr07125b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Amphiphilic peptide-polymer conjugates have the ability to form stable nanoscale micelles, which show great promise for drug delivery and other applications. A recent design has utilized the end-conjugation of alkyl chains to 3-helix coiled coils to achieve amphiphilicity, combined with the side-chain conjugation of polyethylene glycol (PEG) to tune micelle size through entropic confinement forces. Here we investigate this phenomenon in depth, using coarse-grained dissipative particle dynamics (DPD) simulations in an explicit solvent and micelle theory. We analyze the conformations of PEG chains conjugated to three different positions on 3-helix bundle peptides to ascertain the degree of confinement upon assembly, as well as the ordering of the subunits making up the micelle. We discover that the micelle size and stability is dictated by a competition between the entropy of PEG chain conformations in the assembled state, as well as intermolecular cross-interactions among PEG chains that promote cohesion between neighboring conjugates. Our analyses build on the role of PEG molecular weight and conjugation site and lead to computational phase diagrams that can be used to design 3-helix micelles. This work opens pathways for the design of multifunctional micelles with tunable size, shape and stability.
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Affiliation(s)
- Dan Ma
- Department of Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, USA.
| | | | - Reidar Lund
- Department of Chemistry, University of Oslo, P.O. Box 1033, Blindern, N-0315 Oslo, Norway
| | - Sinan Keten
- Department of Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, USA. and Department of Civil and Environmental Engineering, Northwestern University, Evanston, Illinois 60208, USA
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17
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Lund R, Ang J, Shu JY, Xu T. Understanding Peptide Oligomeric State in Langmuir Monolayers of Amphiphilic 3-Helix Bundle-Forming Peptide-PEG Conjugates. Biomacromolecules 2016; 17:3964-3972. [PMID: 27784156 DOI: 10.1021/acs.biomac.6b01356] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Coiled-coil peptide-polymer conjugates are an emerging class of biomaterials. Fundamental understanding of the coiled-coil oligomeric state and assembly process of these hybrid building blocks is necessary to exert control over their assembly into well-defined structures. Here, we studied the effect of peptide structure and PEGylation on the self-assembly process and oligomeric state of a Langmuir monolayer of amphiphilic coiled-coil peptide-polymer conjugates using X-ray reflectivity (XR) and grazing-incidence X-ray diffraction (GIXD). Our results show that the oligomeric state of PEGylated amphiphiles based on 3-helix bundle-forming peptide is surface pressure dependent, a mixture of dimers and trimers was formed at intermediate surface pressure but transitions into trimers completely upon increasing surface pressure. Moreover, the interhelical distance within the coiled-coil bundle of 3-helix peptide-PEG conjugate amphiphiles was not perturbed under high surface pressure. Present studies provide valuable insights into the self-assembly process of hybrid peptide-polymer conjugates and guidance to develop biomaterials with controlled multivalency of ligand presentation.
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Affiliation(s)
- Reidar Lund
- Department of Materials Science and Engineering, University of California, Berkeley 94720, United States.,Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley 94720, United States
| | - JooChuan Ang
- Department of Materials Science and Engineering, University of California, Berkeley 94720, United States
| | - Jessica Y Shu
- Department of Materials Science and Engineering, University of California, Berkeley 94720, United States
| | - Ting Xu
- Department of Materials Science and Engineering, University of California, Berkeley 94720, United States.,Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley 94720, United States.,Department of Chemistry, University of California, Berkeley 94720, United States
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18
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Xia Y, Charubin K, Marquardt D, Heberle FA, Katsaras J, Tian J, Cheng X, Liu Y, Nieh MP. Morphology-Induced Defects Enhance Lipid Transfer Rates. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2016; 32:9757-9764. [PMID: 27560711 DOI: 10.1021/acs.langmuir.6b02099] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Molecular transfer between nanoparticles has been considered to have important implications regarding nanoparticle stability. Recently, the interparticle spontaneous lipid transfer rate constant for discoidal bicelles was found to be very different from spherical, unilamellar vesicles (ULVs). Here, we investigate the mechanism responsible for this discrepancy. Analysis of the data indicates that lipid transfer is entropically favorable, but enthalpically unfavorable with an activation energy that is independent of bicelle size and long- to short-chain lipid molar ratio. Moreover, molecular dynamics simulations reveal a lower lipid dissociation energy cost in the vicinity of interfaces ("defects") induced by the segregation of the long- and short-chain lipids in bicelles; these defects are not present in ULVs. Taken together, these results suggest that the enhanced lipid transfer observed in bicelles arises from interfacial defects as a result of the hydrophobic mismatch between the long- and short-chain lipid species. Finally, the observed lipid transfer rate is found to be independent of nanoparticle stability.
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Affiliation(s)
| | | | - Drew Marquardt
- Institute of Molecular Biosciences, Biophysics Division, NAWI Graz, University of Graz , Graz 8010, Austria
- Department of Physics, Brock University , St. Catharines, Ontario L2S 3A1, Canada
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19
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Ang J, Ma D, Lund R, Keten S, Xu T. Internal Structure of 15 nm 3-Helix Micelle Revealed by Small-Angle Neutron Scattering and Coarse-Grained MD Simulation. Biomacromolecules 2016; 17:3262-3267. [DOI: 10.1021/acs.biomac.6b00986] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Dan Ma
- Department
of Civil and Environmental Engineering and Department of Mechanical
Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Reidar Lund
- Department
of Chemistry, University of Oslo, P.O. Box 1033, Blindern, N-0315 Oslo, Norway
| | - Sinan Keten
- Department
of Civil and Environmental Engineering and Department of Mechanical
Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Ting Xu
- Material
Science Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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20
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Mohamed MG, Tu JH, Huang SH, Chiang YW, Kuo SW. Hydrogen bonding interactions affect the hierarchical self-assembly and secondary structures of comb-like polypeptide supramolecular complexes displaying photoresponsive behavior. RSC Adv 2016. [DOI: 10.1039/c6ra07907e] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Hierarchical lamellae-within-lamellae structure for the PTyr/AzoPy-C16 supramolecular complex, featuring long-range-ordered lamellae arising from the PTyr within lamellae arising from AzoPy-C16 units oriented in a perpendicular manner.
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Affiliation(s)
- Mohamed Gamal Mohamed
- Department of Materials and Optoelectronic Science
- Center for Functional Polymers and Supramolecular Materials
- National Sun Yat-Sen University
- Kaohsiung
- Taiwan
| | - Jia-Huei Tu
- Department of Materials and Optoelectronic Science
- Center for Functional Polymers and Supramolecular Materials
- National Sun Yat-Sen University
- Kaohsiung
- Taiwan
| | - Shih-Hung Huang
- Department of Materials and Optoelectronic Science
- Center for Functional Polymers and Supramolecular Materials
- National Sun Yat-Sen University
- Kaohsiung
- Taiwan
| | - Yeo-Wan Chiang
- Department of Materials and Optoelectronic Science
- Center for Functional Polymers and Supramolecular Materials
- National Sun Yat-Sen University
- Kaohsiung
- Taiwan
| | - Shiao-Wei Kuo
- Department of Materials and Optoelectronic Science
- Center for Functional Polymers and Supramolecular Materials
- National Sun Yat-Sen University
- Kaohsiung
- Taiwan
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21
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He X, Fan J, Wooley KL. Stimuli-Triggered Sol-Gel Transitions of Polypeptides Derived from α-Amino Acid N
-Carboxyanhydride (NCA) Polymerizations. Chem Asian J 2015; 11:437-47. [DOI: 10.1002/asia.201500957] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Indexed: 12/27/2022]
Affiliation(s)
- Xun He
- Departments of Chemistry, Chemical Engineering; and Materials Science and Engineering; Laboratory for Synthetic-Biologic Interactions; Texas A&M University; 3255 TAMU College Station TX 77842 USA
| | - Jingwei Fan
- Departments of Chemistry, Chemical Engineering; and Materials Science and Engineering; Laboratory for Synthetic-Biologic Interactions; Texas A&M University; 3255 TAMU College Station TX 77842 USA
| | - Karen L. Wooley
- Departments of Chemistry, Chemical Engineering; and Materials Science and Engineering; Laboratory for Synthetic-Biologic Interactions; Texas A&M University; 3255 TAMU College Station TX 77842 USA
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22
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Seo JW, Ang J, Mahakian LM, Tam S, Fite B, Ingham ES, Beyer J, Forsayeth J, Bankiewicz KS, Xu T, Ferrara KW. Self-assembled 20-nm (64)Cu-micelles enhance accumulation in rat glioblastoma. J Control Release 2015; 220:51-60. [PMID: 26437259 DOI: 10.1016/j.jconrel.2015.09.057] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2015] [Revised: 09/17/2015] [Accepted: 09/27/2015] [Indexed: 12/18/2022]
Abstract
There is an urgent need to develop nanocarriers for the treatment of glioblastoma multiforme (GBM). Using co-registered positron emission tomography (PET) and magnetic resonance (MR) images, here we performed systematic studies to investigate how a nanocarrier's size affects the pharmacokinetics and biodistribution in rodents with a GBM xenograft. In particular, highly stable, long-circulating three-helix micelles (3HM), based on a coiled-coil protein tertiary structure, were evaluated as an alternative to larger nanocarriers. While the circulation half-life of the 3HM was similar to 110-nm PEGylated liposomes (t1/2=15.5 and 16.5h, respectively), the 20-nm micelles greatly enhanced accumulation within a U87MG xenograft in nu/nu rats after intravenous injection. After accounting for tumor blood volume, the extravasated nanoparticles were quantified from the PET images, yielding ~0.77%ID/cm(3) for the micelles and 0.45%ID/cm(3) for the liposomes. For GBM lesions with a volume greater than 100mm(3), 3HM accumulation was enhanced both within the detectable tumor and in the surrounding brain parenchyma. Further, the nanoparticle accumulation was shown to extend to the margins of the GBM xenograft. In summary, 3HM provides an attractive nanovehicle for carrying treatment to GBM.
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Affiliation(s)
- Jai Woong Seo
- Department of Biomedical Engineering, University of California, Davis, Davis, CA, United States
| | - JooChuan Ang
- Department of Materials Science & Engineering, University of California, Berkeley, Berkeley, CA, United States
| | - Lisa M Mahakian
- Department of Biomedical Engineering, University of California, Davis, Davis, CA, United States
| | - Sarah Tam
- Department of Biomedical Engineering, University of California, Davis, Davis, CA, United States
| | - Brett Fite
- Department of Biomedical Engineering, University of California, Davis, Davis, CA, United States
| | - Elizabeth S Ingham
- Department of Biomedical Engineering, University of California, Davis, Davis, CA, United States
| | - Janine Beyer
- Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, United States
| | - John Forsayeth
- Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, United States
| | - Krystof S Bankiewicz
- Department of Neurological Surgery, University of California San Francisco, San Francisco, CA, United States
| | - Ting Xu
- Department of Materials Science & Engineering, University of California, Berkeley, Berkeley, CA, United States
| | - Katherine W Ferrara
- Department of Biomedical Engineering, University of California, Davis, Davis, CA, United States.
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23
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Xu D, Jiang L, Singh A, Dustin D, Yang M, Liu L, Lund R, Sellati TJ, Dong H. Designed supramolecular filamentous peptides: balance of nanostructure, cytotoxicity and antimicrobial activity. Chem Commun (Camb) 2015; 51:1289-92. [PMID: 25476705 DOI: 10.1039/c4cc08808e] [Citation(s) in RCA: 58] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
This work demonstrates a design strategy to optimize antimicrobial peptides with an ideal balance of minimal cytotoxicity, enhanced stability, potent cell penetration and effective antimicrobial activity, which hold great promise for the treatment of intracellular microbial infections and potentially systemic anti-infective therapy.
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Affiliation(s)
- Dawei Xu
- Department of Chemistry & Biomolecular Science, Clarkson University, Potsdam, NY 13699, USA.
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24
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Zinn T, Willner L, Pipich V, Richter D, Lund R. Effect of Core Crystallization and Conformational Entropy on the Molecular Exchange Kinetics of Polymeric Micelles. ACS Macro Lett 2015; 4:651-655. [PMID: 35596408 DOI: 10.1021/acsmacrolett.5b00197] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Here we systematically study the equilibrium molecular exchange kinetics of a series of amphiphilic n-alkyl-poly(ethylene oxide) (Cn-PEO) micelles containing partly crystallized cores. Using differential scanning calorimetry (DSC), we determined the melting transition and extracted the enthalpy of fusion, ΔHfus, of the n-alkyl chains inside the micellar core. Molecular exchange kinetics was measured below the melting point using a time-resolved small-angle neutron scattering technique (TR-SANS) based on mixing deuterated and proteated but otherwise identical micelles. Comparing both kinetic and thermodynamic data, we find that crystallinity within the micellar cores leads to significant enthalpic and the entropic contributions to the activation barrier for molecular exchange. While the former leads to an enhanced stability, the positive entropic gain favors the process. Interestingly, the entropic term contains an excess term beyond what is expected from the measured entropy of fusion. Based on calculations using the Rotational Isomeric State (RIS) model, we suggest that the excess entropy is due to the gain in conformational entropy upon releasing the chain from the confined state in the core. The study thus provides deep insight into the fundamental processes of micellar kinetics and which might be relevant also to other semicrystalline soft matter and biological systems including lipid membranes.
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Affiliation(s)
- Thomas Zinn
- Department of Chemistry, University of Oslo, Postboks 1033 Blindern, 0315 Oslo, Norway
| | - Lutz Willner
- Jülich Centre for Neutron Science JCNS and Institute for Complex Systems ICS, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Vitaliy Pipich
- Jülich Centre for Neutron Science JCNS, Forschungszentrum Jülich GmbH, Outstation at MLZ, Lichtenbergstrasse 1 85747 Garching, Germany
| | - Dieter Richter
- Jülich Centre for Neutron Science JCNS and Institute for Complex Systems ICS, Forschungszentrum Jülich GmbH, 52425 Jülich, Germany
| | - Reidar Lund
- Department of Chemistry, University of Oslo, Postboks 1033 Blindern, 0315 Oslo, Norway
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25
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Wu X, Lin J, Yu D, Wang J, Yang H, Su Y, Ma A, Sun K, Chen Y. Transformation of self-assembled structures from spherical aggregates in solution to a network structure on a two-dimensional surface. J Appl Polym Sci 2015. [DOI: 10.1002/app.41945] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Xu Wu
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 People's Republic of China
| | - Jing Lin
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 People's Republic of China
| | - Danfeng Yu
- Beijing National Laboratory for Molecular Sciences; Key Labratory of Colloid; Interface and Chemical Thermodynamics; Institute of Chemistry, Chinese Academy of Sciences; Beijing 100190 People's Republic of China
| | - Jinben Wang
- Beijing National Laboratory for Molecular Sciences; Key Labratory of Colloid; Interface and Chemical Thermodynamics; Institute of Chemistry, Chinese Academy of Sciences; Beijing 100190 People's Republic of China
| | - Hui Yang
- Beijing National Laboratory for Molecular Sciences; Key Labratory of Colloid; Interface and Chemical Thermodynamics; Institute of Chemistry, Chinese Academy of Sciences; Beijing 100190 People's Republic of China
| | - Yuzhi Su
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 People's Republic of China
| | - Aiqing Ma
- Oil Production Technology Research Institute, Shengli Oilfield Branch Company; Sinopec, Dongying Shandong 257000 People's Republic of China
| | - Keji Sun
- Oil Production Technology Research Institute, Shengli Oilfield Branch Company; Sinopec, Dongying Shandong 257000 People's Republic of China
| | - Yibo Chen
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 People's Republic of China
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26
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Yang M, Xu D, Jiang L, Zhang L, Dustin D, Lund R, Liu L, Dong H. Filamentous supramolecular peptide-drug conjugates as highly efficient drug delivery vehicles. Chem Commun (Camb) 2015; 50:4827-30. [PMID: 24682213 DOI: 10.1039/c4cc01568a] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
We report here a facile approach to prepare filamentous supramolecular peptide-drug conjugates with precise drug/carrier stoichiometry, nearly 100% loading efficiency and exceptional anti-cancer drug efficacy for chemotherapy.
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Affiliation(s)
- Miao Yang
- Department of Chemistry and Biomolecular Sciences, Clarkson University, Potsdam, NY 13699, USA.
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27
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Wilner SE, Sparks SE, Cowburn D, Girvin ME, Levy M. Controlling lipid micelle stability using oligonucleotide headgroups. J Am Chem Soc 2015; 137:2171-4. [PMID: 25634639 DOI: 10.1021/ja512012m] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Lipid-based micelles provide an attractive option for therapeutic and diagnostic applications because of their small size (<20 nm) and ability to self-assemble and improve the solubility of both hydrophobic drugs and dyes. Their use, however, has been challenged by the fact that these particles are inherently unstable in serum becaue of interactions with protein components, which drives the micelle equilibrium to the monomeric state. We have engineered serum stabilized micelles using short quadruplex forming oligonucleotide extensions as the lipid headgroup. Quadruplex formation on the surface of the particles, confirmed by (1)H NMR, results in slight distortion of the otherwise spherical micelles and renders them resistant to disassembly by serum proteins for >24 h. Using antisense oligonucleotides we demonstrated that disruption of the quadruplex leads to micelle destabilization and cargo release. The ability to use oligonucleotide interactions to control lipid particle stability represents a new approach in the design of programmed nanoscale devices.
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Affiliation(s)
- Samantha E Wilner
- Department of Biochemistry, Albert Einstein College of Medicine , Bronx, New York 10461, United States
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28
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Dong H, Lund R, Xu T. Micelle stabilization via entropic repulsion: balance of force directionality and geometric packing of subunit. Biomacromolecules 2015; 16:743-7. [PMID: 25575164 DOI: 10.1021/bm501659w] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Nanoparticles, 10-30 nm in size, have shown great prospects as nanocarriers for drug delivery. We designed amphiphiles based on 3-helix peptide-PEG conjugate forming 15 nm micelles (defined as "3-helix micelles") with good in vivo stability. Here, we investigated the effect of the site of PEG conjugation on the kinetic stability and showed that the conjugation site affects the PEG chain conformation and the overall molecular architecture of the subunit. Compared to the original design where the PEG chain is located in the middle of the 3-helix bundle, micelle kinetic stability was reduced when the PEG chain was attached near the N-terminus (t(1/2) = 35 h) but was enhanced when the PEG chain was attached near the C-terminus (t(1/2) = 80 h). Quantitative structural and kinetic analysis suggest that the kinetic stability was largely dictated by the combined effects of entropic repulsion associated with PEG chain conformation and the geometric packing of the trimeric subunits. The modular design approach coupled with a variety of well-defined protein stucture and functional polymers will significantly expand the utility of these materials as nanocarriers to meet current demands in nanomedine.
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Affiliation(s)
- He Dong
- Department of Materials Science and Engineering, University of California, Berkeley , Berkeley, California 94720, United States
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29
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Hamed E, Ma D, Keten S. Multiple PEG Chains Attached onto the Surface of a Helix Bundle: Conformations and Implications. ACS Biomater Sci Eng 2015. [DOI: 10.1021/ab500088b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Elham Hamed
- Department of Civil and Environmental
Engineering and Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Dan Ma
- Department of Civil and Environmental
Engineering and Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
| | - Sinan Keten
- Department of Civil and Environmental
Engineering and Mechanical Engineering, Northwestern University, Evanston, Illinois 60208, United States
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30
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Li L, Thayumanavan S. Environment-dependent guest exchange in supramolecular hosts. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:12384-90. [PMID: 25244305 PMCID: PMC4204928 DOI: 10.1021/la502760c] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Dynamic exchange of guest molecules, encapsulated in host assemblies, is a phenomenon in supramolecular chemistry that has important implications in several applications. While the mechanism of exchange in micellar assemblies has been previously investigated, the effect of host and guest environment upon the guest-exchange dynamics has received little attention, if any. In this paper, we study the guest-exchange mechanism in pH-sensitive nanogels along with pH-insensitive nanogels as a control. By systematically comparing the behavior of these nanogels, we show that size, concentration, and hydrophobicity can all play a critical role in guest-exchange dynamics. More importantly, these studies reveal that the dominant mechanism of guest exchange can intimately depend on environmental factors.
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31
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Dube N, Seo JW, Dong H, Shu J, Lund R, Mahakian LM, Ferrara KW, Xu T. Effect of alkyl length of peptide-polymer amphiphile on cargo encapsulation stability and pharmacokinetics of 3-helix micelles. Biomacromolecules 2014; 15:2963-70. [PMID: 24988250 PMCID: PMC4130244 DOI: 10.1021/bm5005788] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2014] [Revised: 07/01/2014] [Indexed: 02/01/2023]
Abstract
3-Helix micelles have demonstrated excellent in vitro and in vivo stability. Previous studies showed that the unique design of the peptide-polymer conjugate based on protein tertiary structure as the headgroup is the main design factor to achieve high kinetic stability. In this contribution, using amphiphiles with different alkyl tails, namely, C16 and C18, we quantified the effect of alkyl length on the stability of 3-helix micelles to delineate the contribution of the micellar core and shell on the micelle stability. Both amphiphiles form well-defined micelles, <20 nm in size, and show good stability, which can be attributed to the headgroup design. C18-micelles exhibit slightly higher kinetic stability in the presence of serum proteins at 37 °C, where the rate constant of subunit exchange is 0.20 h(-1) for C18-micelles vs 0.22 h(-1) for C16-micelles. The diffusion constant for drug release from C18-micelles is approximately half of that for C16-micelles. The differences between the two micelles are significantly more pronounced in terms of in vivo stability and extent of tumor accumulation. C18-micelles exhibit significantly longer blood circulation time of 29.5 h, whereas C16-micelles have a circulation time of 16.1 h. The extent of tumor accumulation at 48 h after injection is ∼43% higher for C18-micelles. The present studies underscore the importance of core composition on the biological behavior of 3-helix micelles. The quantification of the effect of this key design parameter on the stability of 3-helix micelles provides important guidelines for carrier selection and use in complex environment.
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Affiliation(s)
- Nikhil Dube
- Department of Materials Science & Engineering and Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Jai W. Seo
- Department
of Biomedical Engineering, University of
California, Davis, California 95616, United States
| | - He Dong
- Department of Materials Science & Engineering and Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Jessica
Y. Shu
- Department of Materials Science & Engineering and Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Reidar Lund
- Department of Materials Science & Engineering and Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Lisa M. Mahakian
- Department
of Biomedical Engineering, University of
California, Davis, California 95616, United States
| | - Katherine W. Ferrara
- Department
of Biomedical Engineering, University of
California, Davis, California 95616, United States
| | - Ting Xu
- Department of Materials Science & Engineering and Department of Chemistry, University of California, Berkeley, California 94720, United States
- Materials
Science Division, Lawrence Berkeley National
Laboratory, Berkeley, California 94720, United States
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32
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Wu X, Yu D, Yang H, Wang J, Liu Z, Su Y. Self-assembly phenomena of the brush-like amphiphilic organopolysiloxanes in aqueous solution. POLYM ADVAN TECHNOL 2014. [DOI: 10.1002/pat.3374] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Xu Wu
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 China
| | - Danfeng Yu
- Key Lab of Colloids, Interfaces and Chemical Thermodynamics; Institute of Chemistry, Chinese Academy of Sciences; Beijing 100190 China
| | - Hui Yang
- Key Lab of Colloids, Interfaces and Chemical Thermodynamics; Institute of Chemistry, Chinese Academy of Sciences; Beijing 100190 China
| | - Jinben Wang
- Key Lab of Colloids, Interfaces and Chemical Thermodynamics; Institute of Chemistry, Chinese Academy of Sciences; Beijing 100190 China
| | - Zhaoqing Liu
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 China
| | - Yuzhi Su
- College of Chemistry and Chemical Engineering; Guangzhou University; Guangzhou 510006 China
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33
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Woo SY, Lee H. Molecular dynamics studies of PEGylated α-helical coiled coils and their self-assembled micelles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:8848-8855. [PMID: 25000284 DOI: 10.1021/la501973w] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We performed coarse-grained (CG) molecular dynamics simulations of trimeric α-helical coiled coils grafted with poly(ethylene glycol) (PEG) of different sizes and conjugate positions and the self-assembled micelle of amphiphilic trimers. The CG model for the trimeric coiled coil is verified by comparing the α-helical structure and interhelical distance with those calculated from all-atom simulations. In CG simulations of PEGylated trimers, the end-to-end distances and radii of gyration of PEGs grafted to the sides of peptides become shorter than those of free PEGs in water, which agrees with experiments. This shorter size of the grafted PEGs is also confirmed by calculating the thickness of the PEG layer, which is less than the size of the mushroom. These indicate the adsorption of PEG chains onto coiled coils since hydrophobic residues in the exterior sites of coiled coils tend to be less exposed to water and thus interact with PEGs, leading to the compact conformation of adsorbed PEGs. Simulations of the self-assembly of amphiphilic trimers show that the randomly distributed trimers self-assemble to micelles. The outer radius and hydrodynamic radius of the micelle, which were calculated respectively from radial densities and diffusion coefficients, are ∼7 nm, in agreement with the experimental value of ∼7.5 nm, while the aggregation number of amphiphilic molecules per micelle is lower than the experimentally proposed value. These simulations predict the experimentally measured size of PEGs grafted to the trimeric coiled coils and their self-assembled amphiphilic micelles and suggest that the aggregation number of the micelle may be lower, which needs to be confirmed by experiments.
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Affiliation(s)
- Sun Young Woo
- Department of Chemical Engineering, Dankook University , Yongin 448-701, South Korea
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Fan J, Li R, He X, Seetho K, Zhang F, Zou J, Wooley KL. Construction of a versatile and functional nanoparticle platform derived from a helical diblock copolypeptide-based biomimetic polymer. Polym Chem 2014; 5:3977-3981. [PMID: 25013459 PMCID: PMC4084918 DOI: 10.1039/c4py00628c] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Sequential polymerization of N-carboxyanhydrides accelerated by nitrogen flow is utilized to generate a novel well-defined diblock copolypeptide (PDI = 1.08), with incorporation of alkyne-functionalized side-chain groups allowing for rapid and efficient thiol-yne click-type modifications, followed by self-assembly into nanopure water to construct a helical polypeptide-based versatile and functional nanoparticle platform.
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Affiliation(s)
- Jingwei Fan
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
| | - Richen Li
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
| | - Xun He
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
| | - Kellie Seetho
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
| | - Fuwu Zhang
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
| | - Jiong Zou
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
| | - Karen L. Wooley
- Departments of Chemistry, Chemical Engineering, and Materials Science and Engineering, Laboratory for Synthetic-Biologic Interactions, Texas A&M University, P.O. BOX 30012, 3255 TAMU, College Station, TX, 77842 (USA)
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Heller WT, Urban VS, Lynn GW, Weiss KL, O'Neill HM, Pingali SV, Qian S, Littrell KC, Melnichenko YB, Buchanan MV, Selby DL, Wignall GD, Butler PD, Myles DA. The Bio-SANS instrument at the High Flux Isotope Reactor of Oak Ridge National Laboratory. J Appl Crystallogr 2014. [DOI: 10.1107/s1600576714011285] [Citation(s) in RCA: 71] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Small-angle neutron scattering (SANS) is a powerful tool for characterizing complex disordered materials, including biological materials. The Bio-SANS instrument of the High Flux Isotope Reactor of Oak Ridge National Laboratory (ORNL) is a high-flux low-background SANS instrument that is, uniquely among SANS instruments, dedicated to serving the needs of the structural biology and biomaterials communities as an open-access user facility. Here, the technical specifications and performance of the Bio-SANS are presented. Sample environments developed to address the needs of the user program of the instrument are also presented. Further, the isotopic labeling and sample preparation capabilities available in the Bio-Deuteration Laboratory for users of the Bio-SANS and other neutron scattering instruments at ORNL are described. Finally, a brief survey of research performed using the Bio-SANS is presented, which demonstrates the breadth of the research that the instrument's user community engages in.
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Salegio EA, Streeter H, Dube N, Hadaczek P, Samaranch L, Kells AP, San Sebastian W, Zhai Y, Bringas J, Xu T, Forsayeth J, Bankiewicz KS. Distribution of nanoparticles throughout the cerebral cortex of rodents and non-human primates: Implications for gene and drug therapy. Front Neuroanat 2014; 8:9. [PMID: 24672434 PMCID: PMC3956368 DOI: 10.3389/fnana.2014.00009] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2013] [Accepted: 02/17/2014] [Indexed: 11/13/2022] Open
Abstract
When nanoparticles/proteins are infused into the brain, they are often transported to distal sites in a manner that is dependent both on the characteristics of the infusate and the region targeted. We have previously shown that adeno-associated virus (AAV) is disseminated within the brain by perivascular flow and also by axonal transport. Perivascular distribution usually does not depend strongly on the nature of the infusate. Many proteins, neutral liposomes and AAV particles distribute equally well by this route when infused under pressure into various parenchymal locations. In contrast, axonal transport requires receptor-mediated uptake of AAV by neurons and engagement with specific transport mechanisms previously demonstrated for other neurotropic viruses. Cerebrospinal fluid (CSF) represents yet another way in which brain anatomy may be exploited to distribute nanoparticles broadly in the central nervous system. In this study, we assessed the distribution and perivascular transport of nanoparticles of different sizes delivered into the parenchyma of rodents and CSF in non-human primates.
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Affiliation(s)
- Ernesto A Salegio
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Hillary Streeter
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Nikhil Dube
- Department of Materials Science & Engineering, University of California at Berkeley Berkeley, CA, USA
| | - Piotr Hadaczek
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Lluis Samaranch
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Adrian P Kells
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Waldy San Sebastian
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Yuying Zhai
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - John Bringas
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Ting Xu
- Department of Materials Science & Engineering, University of California at Berkeley Berkeley, CA, USA
| | - John Forsayeth
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
| | - Krystof S Bankiewicz
- Department of Neurological Surgery, University of California at San Francisco San Francisco, CA, USA
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Molecular Modeling of PEGylated Peptides, Dendrimers, and Single-Walled Carbon Nanotubes for Biomedical Applications. Polymers (Basel) 2014. [DOI: 10.3390/polym6030776] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
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Dube N, Shu JY, Dong H, Seo JW, Ingham E, Kheirolomoom A, Chen PY, Forsayeth J, Bankiewicz K, Ferrara KW, Xu T. Evaluation of doxorubicin-loaded 3-helix micelles as nanocarriers. Biomacromolecules 2013; 14:3697-705. [PMID: 24050265 DOI: 10.1021/bm4010518] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Designing stable drug nanocarriers, 10-30 nm in size, would have significant impact on their transport in circulation, tumor penetration, and therapeutic efficacy. In the present study, biological properties of 3-helix micelles loaded with 8 wt % doxorubicin (DOX), ~15 nm in size, were characterized to validate their potential as a nanocarrier platform. DOX-loaded micelles exhibited high stability in terms of size and drug retention in concentrated protein environments similar to conditions after intravenous injections. DOX-loaded micelles were cytotoxic to PPC-1 and 4T1 cancer cells at levels comparable to free DOX. 3-Helix micelles can be disassembled by proteolytic degradation of peptide shell to enable drug release and clearance to minimize long-term accumulation. Local administration to normal rat striatum by convection enhanced delivery (CED) showed greater extent of drug distribution and reduced toxicity relative to free drug. Intravenous administration of DOX-loaded 3-helix micelles demonstrated improved tumor half-life and reduced toxicity to healthy tissues in comparison to free DOX. In vivo delivery of DOX-loaded 3-helix micelles through two different routes clearly indicates the potential of 3-helix micelles as safe and effective nanocarriers for cancer therapeutics.
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Affiliation(s)
- Nikhil Dube
- Department of Materials Science and Engineering, University of California , Berkeley, California 94720, United States
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