Effect of Aeromonas hydrophila on reductive dechlorination of DDTs by zero-valent iron

The biotechnological potential of Aeromonas: a bird's eye view

The genus Aeromonas comprises Gram-negative bacilli widely distributed in aquatic habitats that can also be found in the terrestrial environment and in close association with humans and animals. Aeromonas spp. are particularly versatile bacteria, with high genomic plasticity and notable capacity to adapt to different environments and extreme conditions. On account of being mostly associated with their pathogenic potential, research on the biotechnological potentialities of Aeromonas spp. is considerably scarce when compared to other bacterial groups. Nonetheless, studies over the years have been hinting at several interesting hidden potentialities in this bacterial group, especially with the recent advances in whole-genome sequencing, unveiling Aeromonas spp. as interesting candidates for the discovery of novel industrial biocatalysts, bioremediation strategies, and biopolyester production. In this context, the present study aims to provide an overview of the main biotechnological applications reported in the genus Aeromonas and provide new insights into the further exploration of these frequently overlooked, yet fascinating, bacteria.

Removal of antibiotic thiamphenicol by bacterium Aeromonas hydrophila HS01

Thiamphenicol (TAP) is an amphenicol antibiotic, which has a broad-spectrum inhibitory effect on both gram-positive and gram-negative bacteria. Since it is widely used in animals and aquaculture, its residues in environment may bring potential risk for human health and ecosystems. While TAP can be removed through conventional physical or chemical methods, its bioremediation using microorganisms is less studied. Here, we report the removal of TAP by a bacterial strain, Aeromonas hydrophila HS01, which can remove more than 90.0% of TAP in a living cell-dependent manner. Our results indicated that its removal efficiency can be greatly affected by the growth condition. Proteomics studies revealed a number of differentially expressed proteins of HS01 in the presence of TAP, which may play critical roles in the transportation and degradation of TAP. All these results indicate bacterial strain A. hydrophila HS01 is a new microbial resource for efficiently removing TAP, and may shed new insights in developing bioremediation approaches for TAP pollution.

Extracellular electron transfer via multiple electron shuttles in waterborne Aeromonas hydrophila for bioreduction of pollutants

Members of the genus Aeromonas prevail in aquatic habitats and have a great potential in biological wastewater treatment because of their unique extracellular electron transfer (EET) capabilities. However, the mediated EET mechanisms of Aeromonas have not been fully understood yet, hindering their applications in biological wastewater treatment processes. In this study, the electron shuttles in Aeromonas hydrophila, a model and widespread strain in aquatic environments and wastewater treatment plants, were explored. A. hydrophila was found to produce both flavins and 2-amino-3-carboxy-1,4-naphthoquinone (ACNQ) as electron shuttles and utilize them to accelerate its EET for the bioreduction of various pollutants. The Mtr-like respiratory pathway was essential for the reduction of flavins, but not involved in the ACNQ reduction. The electron shuttle activity of ACNQ for pollutant bioreduction involved the redox reactions that occurred inside the cell. These findings deepen our understanding about the underlying EET mechanisms in dissimilatory metal reducing bacteria and provide new insights into the roles of the genus Aeromonas in biological wastewater treatment.

Chemo-metrically formulated consortium with selectively screened bacterial strains for ameliorated biotransformation and detoxification of 1,4-dioxane

The biotransformation of 1,4-dioxane, a endrocrine disrupting chemical was achieved using different bacterial strains and their consortia. Three different bacterial isolates were screened on their ability to grow with 50 mg/L 1,4-dioxane in the basal mineral medium. Then the isolates were tested for its efficiency to biotransform 1000 mg/L 1,4-dioxane at varying period of time; 24-120 h. The isolates were distinguished by their morphological features and 16 S rRNA gene sequencing was done to evaluate the phylogenetic relationships. The isolates were identified as Bacillus marisflavi strain MGA, Aeromonas hydrophila strain AG and Shewanella putrefaciens strain AG. The degree of biotransformation was escalated by constructing a bacterial consortium using statistical tool; response-mixture matrix under the design of experiments. The fully grown bacterial strains were used as ingredients in different proportions to formulate the consortium. The biotransformation was analyzed for functional attenuation using spectroscopic techniques and reduction in 1,4-dioxane level was confirmed using mass spectrometry. The precise quantification of biotransformation using mass spectral profile revealed that the consortium removed 31%, 61% and 85% of 1000 mg/L 1,4-dioxane within 96, 120 and 144 h respectively. The activities of inducible laccase were elucidated during biotransformation of 1,4-dioxane. Bio-toxicity of treated and untreated 1,4-dioxane on brine shrimp; Artemia salina showed that the biotransformed products were less toxic. Therefore, this report would be first of its kind to report the biotransformation and detoxification of 1,4-dioxane by a statistically designed bacterial consortium.

Interaction of zero-valent iron and carbonaceous materials for reduction of DDT

Dechlorination of dichlorodiphenyltrichloroethane (DDT) as a model compound was performed with zero-valent iron (micro-ZVI and nano-ZVI) as reductant and carbonaceous adsorbents as sink and catalyst in water. DDT is rapidly converted to dichlorodiphenyldichloroethane (DDD) in direct contact with ZVI. However, up to 90% of the DDD is transformed into non-identified, most likely oligomeric products. There is no indication of dechlorination at the aromatic rings. DDT is still rapidly dechlorinated when it is adsorbed on carbonaceous adsorbents, even though ZVI particles have no direct access to the adsorbed DDT. The carbonaceous materials function as adsorbent and catalyst for the dechlorination reaction at once. From electrochemical experiments, we deduced that direct physical contact between ZVI particles and the adsorbent is essential for enabling a chemical reaction. Electron conduction alone does not effect any dechlorination reaction. We hypothesize hydrogen species (H∗) which spill from the ZVI surface to the carbon surface and initiate reductive transformations there. The role of carbonaceous adsorbents is different for different degradation pathways: in contrast to hydrodechlorination (reduction), adsorption protects DDT from dehydrochlorination (hydrolysis).

Insights into the Inhibition of Aeromonas hydrophila d-Alanine-d-Alanine Ligase by Integration of Kinetics and Structural Analysis

Aeromonas hydrophila, a pathogenic bacterium, is harmful to humans, domestic animals, and fishes and, moreover, of public health concern due to the emergence of multiple drug-resistant strains. The cell wall has been discovered as a novel and efficient drug target against bacteria, and d-alanine-d-alanine ligase (Ddl) is considered as an essential enzyme in bacterial cell wall biosynthesis. Herein, we studied the A. hydrophila HBNUAh01 Ddl (AhDdl) enzyme activity and kinetics and determined the crystal structure of AhDdl/d-Ala complex at 2.7 Å resolution. An enzymatic assay showed that AhDdl exhibited higher affinity to ATP (K_m: 54.1 ± 9.1 μM) compared to d-alanine (K_m: 1.01 ± 0.19 mM). The kinetic studies indicated a competitive inhibition of AhDdl by d-cycloserine (DCS), with an inhibition constant (K_i) of 120 μM and the 50% inhibitory concentrations (IC₅₀) value of 0.5 mM. Meanwhile, structural analysis indicated that the AhDdl/d-Ala complex structure adopted a semi-closed conformation form, and the active site was extremely conserved. Noteworthy is that the substrate d-Ala occupied the second d-Ala position, not the first d-Ala position. These results provided more insights for understanding the details of the catalytic mechanism and resources for the development of novel drugs against the diseases caused by A. hydrophila.

CRISPRi System as an Efficient, Simple Platform for Rapid Identification of Genes Involved in Pollutant Transformation by Aeromonas hydrophila

Aeromonas species are indigenous in diverse aquatic environments and play important roles in environmental remediation. However, the pollutant transformation mechanisms of these bacteria remain elusive, and their potential in pollution control is largely unexploited so far. In this work, we report an efficient and simple genome regulation tool to edit Aeromonas hydrophila and identify its biomolecular pathways for pollutant transformation. The genome regulation system, which is based on the type II clustered regularly interspaced short palindromic repeat interference (CRISPRi) system from Streptococcus pyogenes, can serve as a reversible and multiplexible platform for gene knockdown in A. hydrophila. A single-plasmid CRISPRi system harboring both dCas9 and the sgRNA was constructed in A. hydrophila and used to silence diverse genes with varied sizes and expression levels. With this system, up to 467-fold repression of gfp expression was achieved, and the function of the essential gene-ftsZ was identified quickly and accurately. Furthermore, simultaneous transcriptional repression of multiple targeted genes was realized. We discovered that the ars operon played an essential role in arsenic detoxification, and the extracellular electron transfer (EET) pathway was involved in methyl orange reduction, but not in vanadium reduction by A. hydrophila. Our method allows better insights and effective genetic manipulation of the pollutant transformation processes in Aeromonas, which might facilitate more efficient utilization of the Aeromonas species and other microbial species for environmental remediation applications.

Ball Milling-Induced Plate-like Sub-microstructured Iron for Enhancing Degradation of DDT in a Real Soil Environment

The remediation of soil contaminated by 1,1,1-trichloro-2,2-bis(4-chlorophenyl) ethane (DDT) has been a challenge. In this paper, the degradation performances of the ball milling-induced plate-like sub-microstructured zero valent iron (SMZVI) to DDT in a real soil environment is studied. It has been found that such SMZVI exhibits much higher degradation performances to DDT in soil than commercial ZVI powders under acidic conditions. More than 95% DDT could be degraded within 80 min in the 5 ppm DDT-contaminated soil with addition of 50 mg g^-1 SMZVI, which is much better than the previously reported results. The time-dependent DDT removal amount can be well described by the pseudo first-order kinetic model. Further experiments have revealed that the ZVI dosages, surfactant's and acidic additions, and the weight ratio of soil-to-water in the slurries are important to DDT degradation, and the degradation products were mainly DDD (a product with less chlorine). An acid-assisted ZVI-induced reductive dechlorination process is proposed, which can well explain the DDT degradation behaviors in soil and the influence from the other factors. This work not only deepens the understanding of DDT degradation in soils based on ZVI but also demonstrates that the SMZVI could be a promising material for DDT degradation in real environments.

Fe(II)/Cu(II) interaction on goethite stimulated by an iron-reducing bacteria Aeromonas Hydrophila HS01 under anaerobic conditions

Copper is a trace element essential for living creatures, but copper content in soil should be controlled, as it is toxic. The physical-chemical-biological features of Cu in soil have a significant correlation with the Fe(II)/Cu(II) interaction in soil. Of significant interest to the current study is the effect of Fe(II)/Cu(II) interaction conducted on goethite under anaerobic conditions stimulated by HS01 (a dissimilatory iron reduction (DIR) microbial). The following four treatments were designed: HS01 with α-FeOOH and Cu(II) (T1), HS01 with α-FeOOH (T2), HS01 with Cu(II) (T3), and α-FeOOH with Cu(II) (T4). HS01 presents a negligible impact on copper species transformation (T3), whereas the presence of α-FeOOH significantly enhanced copper aging contributing to the DIR effect (T1). Moreover, the violent reaction between adsorbed Fe(II) and Cu(II) leads to the decreased concentration of the active Fe(II) species (T1), further inhibiting reactions between Fe(II) and iron (hydr)oxides and decelerating the phase transformation of iron (hydr)oxides (T1). From this study, the effects of the Fe(II)/Cu(II) interaction on goethite under anaerobic conditions by HS01 are presented in three aspects: (1) the accelerating effect of copper aging, (2) the reductive transformation of copper, and (3) the inhibition effect of the phase transformation of iron (hydr)oxides.

The influence of small-scale interlayer heterogeneity on DDT removal efficiency for flushing technology

With an aim to investigate the influence of small-scale interlayer heterogeneity on DDT removal efficiency, batch test including surfactant-stabilized foam flushing and solution flushing were carried out. Two man-made heterogeneous patterns consisting of coarse and fine quartz sand were designed to reveal the influencing mechanism. Moreover, the removal mechanism and the corresponding contribution by foam flushing were quantitatively studied. Compared with surfactant solution flushing, the DDT removal efficiency by surfactant-stabilized foam flushing increased by 9.47% and 11.28% under heterogeneous patterns 1 and 2, respectively. The DDT removal contributions of improving sweep efficiency for heterogeneous patterns 1 and 2 by foam flushing were 40.82% and 45.98%, and the contribution of dissolving capacity were 59.18% and 54.02%, respectively. The dissolving capacity of DDT played a major role in DDT removal efficiency by foam flushing under laboratory conditions. And the DDT removal contribution of significant improving sweep efficiency was higher than that of removal decline caused by weak solubilizing ability of foam film compared with solution flushing. The obtained results indicated that the difference of DDT removal efficiency by foam flushing was decreased under two different heterogeneous patterns with the increase of the contribution of improving foam flushing sweep efficiency. It suggested that foam flushing can reduce the disturbance from interlayer heterogeneity in remediating DDT contaminated heterogeneous medium.

Enhanced degradation performances of plate-like micro/nanostructured zero valent iron to DDT

Micro/nanostructured zero valent iron (MNZVI) is successfully mass-synthesized by ball-milling the industrially-reduced iron powders. The as-prepared MNZVI is plate-like in morphology with about 2-5μm in planar size and 35-55nm in thickness, and ∼16m(2)/g in specific surface area. Such plate-like MNZVI has demonstrated much higher degradation performances to DDT [or 1,1,1-trichloro-2,2-bis(4-chlorophenyl) ethane] in the aqueous solution than the commercial ZVI powders under acidic conditions. The MNZVI-induced DDT degradation is also much faster than the previously reported results. The time-dependent DDT removal amount can be described by the pseudo first-order kinetic model. Further experiments have shown that more than 50% of DDT can be mineralized in 20min and the rest is dechlorinated to DDX (the products with less chlorine). It has been revealed that the DDT degradation could be attributed to the acid assisted ZVI-induced mineralization and dechlorination. The mineralization process is dominant during the initial stage within 20min, and the dechlorination is the main reaction in the anaphase of the degradation. This work not only deepens understanding of DDT degradation but also could provide a highly efficient material for the practical treatment of the DDT in a real environment.

Evaluation of foam surfactant for foam-flushing technique in remediation of DDT-contaminated soil using data envelopment analysis method

With an aim to select the most appropriate foaming surfactant for remediation of DDT-contaminated soil by foam-flushing technique, the performances of nonionic and anionic surfactant in several aspects were observed in this study. SDS had the best foam static characteristic among the four experimental surfactants. The solubilizing ability for DDT followed the order of Tween80 > TX100 > SDS > Brij35. The adsorption loss of SDS onto soil was the lowest. The order of desorption efficiency for DDT followed as TX-100 > Tween80 > Brij35 > SDS. Based on these experimental investigations, the overall performances of foaming surfactants were evaluated by data envelopment analysis method. The results indicated that SDS was the optimal alternative for remediation of DDT-contaminated soil by foam-flushing technique. This conclusion was reached with the consideration of the cost, foam static characteristic, surfactant adsorption loss, solubilizing ability, and desorption efficiency of surfactant for DDT.

Anaerobic transformation of DDT related to iron(III) reduction and microbial community structure in paddy soils

We studied the mechanisms of microbial transformation in functional bacteria on 1,1,1-trichloro-2,2-bis(p-chlorophenyl)ethane (DDT) in two different field soils, Haiyan (HY) and Chenghai (CH). The results showed that microbial activities had a steady dechlorination effect on DDT and its metabolites (DDx). Adding lactate or glucose as carbon sources increased the amount of Desulfuromonas, Sedimentibacter, and Clostridium bacteria, which led to an increase in adsorbed Fe(II) and resulted in increased DDT transformation rates. The electron shuttle of anthraquinone-2,6-disulfonic disodium salt resulted in an increase in the negative potential of soil by mediating the electron transfer from the bacteria to the DDT. Moreover, the DDT-degrading bacteria in the CH soil were more abundant than those in the HY soil, which led to higher DDT transformation rates in the CH soil. The most stable compound of DDx was 1,1-dichloro-2,2-bis(p-chloro-phenyl)ethane, which also was the major dechlorination metabolite of DDT, and 1-chloro-2,2-bis-(p-chlorophenyl)ethane and 4,4'-dichlorobenzo-phenone were found to be the terminal metabolites in the anaerobic soils.

Enhanced biotransformation of DDTs by an iron- and humic-reducing bacteria Aeromonas hydrophila HS01 upon addition of goethite and anthraquinone-2,6-disulphonic disodium salt (AQDS)

A fermentative facultative anaerobe, strain HS01 isolated from subterranean sediment, was identified as Aeromonas hydrophila by 16S rRNA sequence analysis. The biotransformation of 1,1,1-trichloro-2,2-bis(4-chlorophenyl) ethane (DDT), 1,1-dichloro-2,2-bis(4-chlorophenyl) ethylene (DDD), and 1,1-dichloro-2,2-bis (4-chlorophenyl) ethane (DDE) by HS01 was investigated in the presence of goethite and anthraquinone-2,6-disulphonic disodium salt (AQDS). The results demonstrated that HS01 was capable of reducing DDTs, goethite and AQDS. And goethite can significantly enhance the reduction of DDT, DDD and DDE to some extent, while the addition of AQDS can further accelerate the reduction of Fe(III) and DDTs. The products of DDT transformation were identified as a large amount of dominant DDD, and small amounts of 1-chloro-2,2-bis-(p-chlorophenyl)ethane (DDMU), unsym-bis(p-chlorophenyl)-ethylene (DDNU), and 4,4'-dichlorobenzophenone (DBP). The results of cyclic voltammetry suggested that AQDS could increase the amounts of reactive biogenic Fe(II), resulting in the enhanced transformation of DDTs. This investigation gives some new insight in the fate of DDTs related to iron- and humic-reducing bacteria.

Bio-current as an indicator for biogenic Fe(II) generation driven by dissimilatory iron reducing bacteria

Microbial reduction of insoluble iron minerals by dissimilatory iron reducing bacteria (DIRB) is an important environment process in the iron biogeochemical cycle. We reported that the bio-current generated from oxidation of organic matter by these bacteria in the presence of iron oxides can be used as an indicator for microbial dissolution of insoluble iron oxides. Bioelectrochemical experiments were conducted to investigate the effects of the specific bacteria and the phase identity of iron oxides on bio-current generation by recording the current response as a result of a poised constant potential. Experimental results indicated that the bio-current generation can be greatly enhanced by iron oxide addition under all the conditions varying in the type of pure culture or iron oxide. The increase in the bio-current was linearly correlated with the increased concentration of biogenic Fe(II) detected either by chemical analysis or cyclic voltammetry (CV) tests. This can be understood based on the proposed mechanism that the Fe(II)/Fe(III) couple functions as the electron mediator shuttling electrons from the microbes to the electrodes.