1
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Morozov BS, Gargiulo F, Ghule S, Lee DJ, Hampel F, Kim HM, Kataev EA. Macrocyclic Conformational Switch Coupled with Pyridinium-Induced PET for Fluorescence Detection of Adenosine Triphosphate. J Am Chem Soc 2024; 146:7105-7115. [PMID: 38417151 DOI: 10.1021/jacs.4c01621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2024]
Abstract
The binding of nucleotides is crucial for signal transduction as it induces conformational protein changes, leading to downstream cellular responses. Synthetic receptors that bind nucleotides and transduce the binding event into global conformational rearrangements are highly challenging to design, especially those that operate in an aqueous solution. Much work is focused on evaluating functionalized dyes to detect nucleotides, whereas coupling of a nucleotide-induced conformational switching to a sensing event has not been reported to date. We disclose synthetic receptors that undergo a global conformational rearrangement upon nucleotide binding. Integrating naphthalimide and the pyridinium ion into the structure enables stabilization of the folded conformation and efficient fluorescence quenching. The binding of a nucleotide rearranges the receptor conformation and alters the strong fluorescence enhancement. The methylpyridinium-containing receptor demonstrated high sensing selectivity for adenosine 5'-triphosphate (ATP) and a record 160-fold fluorescence enhancement. It can detect fluctuations of ATP in HeLa cells and possesses low cytotoxicity. The developed systems present an attractive approach for designing ATP-responsive artificial molecular switches that operate in water and integrate a strong fluorescence response.
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Affiliation(s)
- Boris S Morozov
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Fabiano Gargiulo
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Swapnil Ghule
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Dong Joon Lee
- Department of Chemistry and Department of Energy Systems Research, Ajou University, 16499 Suwon, Republic of Korea
| | - Frank Hampel
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Hwan Myung Kim
- Department of Chemistry and Department of Energy Systems Research, Ajou University, 16499 Suwon, Republic of Korea
| | - Evgeny A Kataev
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
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2
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Sivagnanam S, Mahato P, Das P. An overview on the development of different optical sensing platforms for adenosine triphosphate (ATP) recognition. Org Biomol Chem 2023; 21:3942-3983. [PMID: 37128980 DOI: 10.1039/d3ob00209h] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Adenosine triphosphate (ATP), one of the biological anions, plays a crucial role in several biological processes including energy transduction, cellular respiration, enzyme catalysis and signaling. ATP is a bioactive phosphate molecule, recognized as an important extracellular signaling agent. Apart from serving as a universal energy currency for various cellular events, ATP is also considered a factor responsible for numerous physiological activities. It regulates cellular metabolism by breaking phosphoanhydride bonds. Several diseases have been reported widely based on the levels and behavior of ATP. The variation of ATP concentration usually causes a foreseeable impact on mitochondrial physiological function. Mitochondrial dysfunction is responsible for the occurrence of many severe diseases such as angiocardiopathy, malignant tumors and Parkinson's disease. Therefore, there is high demand for developing a sensitive, fast-responsive, nontoxic and versatile detection platform for the detection of ATP. To this end, considerable efforts have been employed by several research groups throughout the world to develop specific and sensitive detection platforms to recognize ATP. Although a repertoire of optical chemosensors (both colorimetric and fluorescent) for ATP has been developed, many of them are not arrayed appropriately. Therefore, in this present review, we focused on the design and sensing strategy of some chemosensors including metal-free, metal-based, sequential sensors, aptamer-based sensors, nanoparticle-based sensors etc. for ATP recognition via diverse binding mechanisms.
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Affiliation(s)
- Subramaniyam Sivagnanam
- Department of Chemistry, SRM Institute of Science and Technology, SRM Nagar, Potheri, Kattankulathur, Tamil Nadu-603203, India.
| | - Prasenjit Mahato
- Department of Chemistry, Raghunathpur College, Sidho-Kanho-Birsha University, Purulia, West Bengal-723133, India
| | - Priyadip Das
- Department of Chemistry, SRM Institute of Science and Technology, SRM Nagar, Potheri, Kattankulathur, Tamil Nadu-603203, India.
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3
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Viviano-Posadas AO, Romero-Mendoza U, Bazany-Rodríguez IJ, Velázquez-Castillo RV, Martínez-Otero D, Bautista-Renedo JM, González-Rivas N, Galindo-Murillo R, Salomón-Flores MK, Dorazco-González A. Efficient fluorescent recognition of ATP/GTP by a water-soluble bisquinolinium pyridine-2,6-dicarboxamide compound. Crystal structures, spectroscopic studies and interaction mode with DNA. RSC Adv 2022; 12:27826-27838. [PMID: 36320280 PMCID: PMC9520314 DOI: 10.1039/d2ra05040d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 09/21/2022] [Indexed: 11/04/2023] Open
Abstract
The new dicationic pyridine-2,6-dicarboxamide-based compound 1 bearing two N-alkylquinolinium units was synthesized, structurally determined by single-crystal X-ray diffraction, and studied in-depth as a fluorescent receptor for nucleotides and inorganic phosphorylated anions in pure water. The addition of nucleotides to 1 at pH = 7.0 quenches its blue emission with a selective affinity towards adenosine 5'-triphosphate (ATP) and guanosine 5'-tripohosphate (GTP) over other nucleotides such CTP, UTP, ADP, AMP, dicarboxylates and inorganic anions. On the basis of the spectroscopic tools (1H, 31P NMR, UV-vis, fluorescence), MS measurements and DFT calculations, receptor 1 binds ATP with high affinity (log K = 5.04) through the simultaneous formation of strong hydrogen bonds and π-π interactions between the adenosine fragment and quinolinium ring with binding energy calculated in 8.7 kcal mol-1. High affinity for ATP/GTP is attributed to the high acidity of amides and preorganized rigid structure of 1. Receptor 1 is an order of magnitude more selective for ATP than GTP. An efficient photoinduced electron transfer quenching mechanism with simultaneous receptor-ATP complexation in both the excited and ground states is proposed. Additionally, multiple spectroscopic studies and molecular dynamics simulations showed that 1 can intercalate into DNA base pairs.
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Affiliation(s)
- Alejandro O Viviano-Posadas
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Ulises Romero-Mendoza
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Iván J Bazany-Rodríguez
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Rocío V Velázquez-Castillo
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Diego Martínez-Otero
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Joanatan M Bautista-Renedo
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Nelly González-Rivas
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Rodrigo Galindo-Murillo
- Department of Medicinal Chemistry, College of Pharmacy, University of Utah 2000 East 30 South Skaggs 306 Salt Lake City 84112 Utah USA
| | - María K Salomón-Flores
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Alejandro Dorazco-González
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
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4
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Rim Lee Y, Kwon N, Swamy KMK, Kim G, Yoon J. Rhodamine-thiourea Linked Naphthalimide Derivative to Image ATP in Mitochondria using Two Channels. Chem Asian J 2022; 17:e202200413. [PMID: 35671139 DOI: 10.1002/asia.202200413] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 06/02/2022] [Indexed: 11/08/2022]
Abstract
Adenosine 5'-triphosphate (ATP), synthesized in mitochondria, is an energy molecule in all living things. ATP not only serves as an energy source for protein synthesis and muscle contraction, but also as an important indicator for various diseases, such as Parkinson's disease, cardiovascular disease, and others. Accordingly, detection and sensing of ATP, especially in mitochondria, are important. In this study, a unique ring-opening process of rhodamine was coupled to recognition of ATP via introduction of a thiourea moiety, which was further linked to a naphthalimide group. A strong fluorescent emission at ∼580 nm was accompanied by a color change from colorless to pink upon addition of ATP at pH 7.4. Fluorescent probe 1 successfully imaged mitochondrial ATP with a Pearson's coefficient of 0.8. In addition, green emission from the naphthalimide moiety at ∼530 nm was observed without any change upon addition of ATP. This emission can be considered equivalent to an internal standard to utilize probe 1 as a dual-channel probe for ATP. Furthermore, probe 1 showed negligible cytotoxicity based on MTT assays.
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Affiliation(s)
- You Rim Lee
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 120-750, Korea)
| | - Nahyun Kwon
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 120-750, Korea)
| | - K M K Swamy
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 120-750, Korea)
| | - Gyoungmi Kim
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 120-750, Korea)
| | - Juyoung Yoon
- Department of Chemistry and Nanoscience, Ewha Womans University, Seoul, 120-750, Korea)
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5
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Zwicker VE, Sergeant GE, New EJ, Jolliffe KA. A colorimetric sensor array for the classification of biologically relevant tri-, di- and mono-phosphates. Org Biomol Chem 2021; 19:1017-1021. [DOI: 10.1039/d0ob02397c] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
A cyclic tetrapeptide paired with six commercially available indicators provides a chemosensing array able to classify biological phosphate derivatives.
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Affiliation(s)
| | | | - Elizabeth J. New
- The University of Sydney
- School of Chemistry
- Australia
- The University of Sydney Nano Institute (Sydney Nano)
- The University of Sydney
| | - Katrina A. Jolliffe
- The University of Sydney
- School of Chemistry
- Australia
- The University of Sydney Nano Institute (Sydney Nano)
- The University of Sydney
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6
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Li X, Zhao Z, Hu L, Wei D, Liu Q. Tetraphenylethylene-Based Tetradentate Azolium Salts: Synthesis and Selective Recognition for Ions. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202103011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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7
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Hu Y, Long S, Fu H, She Y, Xu Z, Yoon J. Revisiting imidazolium receptors for the recognition of anions: highlighted research during 2010-2019. Chem Soc Rev 2020; 50:589-618. [PMID: 33174897 DOI: 10.1039/d0cs00642d] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Imidazolium based receptors selectively recognize anions, and have received more and more attention. In 2006 and 2010, we reviewed the mechanism and progress of imidazolium salt recognition of anions, respectively. In the past ten years, new developments have emerged in this area, including some new imidazolium motifs and the identification of a wider variety of biological anions. In this review, we discuss the progress of imidazolium receptors for the recognition of anions in the period of 2010-2019 and highlight the trends in this area. We first classify receptors based on motifs, including some newly emerging receptors, as well as new advances in existing receptor types at this stage. Then we discuss separately according to the types of anions, including ATP, GTP, DNA and RNA.
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Affiliation(s)
- Ying Hu
- College of Chemical Engineering, Zhejiang University of Technology, Hangzhou, Zhejiang 310014, China.
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8
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Agafontsev AM, Shumilova TA, Rüffer T, Lang H, Kataev EA. Anthracene-Based Cyclophanes with Selective Fluorescent Responses for TTP and GTP: Insights into Recognition and Sensing Mechanisms. Chemistry 2019; 25:3541-3549. [PMID: 30644598 DOI: 10.1002/chem.201806130] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2018] [Revised: 01/11/2019] [Indexed: 12/14/2022]
Abstract
Three anthracene-based cyclophanes were synthesized and their binding properties towards nucleoside triphosphates were studied. A new polycyclic amine derived from dearomatized anthracene was identified as a major side product in the cyclization reaction between 9,10-anthracenedicarboxaldehyde and diethylenetriamine. Its structure was determined by single-crystal X-ray analysis. The cyclophanes were found to form 1:1 complexes with all nucleoside triphosphates as well as with pyrophosphate in a buffered aqueous solution at pH 6.2. A turn-on fluorescence response was observed for all nucleotides except for GTP, which demonstrated strong fluorescence quenching. The strongest turn-on fluorescence was observed for the largest receptor 3 in the presence of thymidine triphosphate (TTP). Based on the NMR and fluorescence experiments, two major binding modes for nucleotide complexes were identified.
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Affiliation(s)
- Aleksandr M Agafontsev
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany.,N.N. Vorozhtsov Institute of Organic Chemistry SB RAS, 9 Lavrentiev Avenue, 630090, Novosibirsk, Russia.,Novosibirsk State University, Pirogova St. 1, 630090, Novosibirsk, Russia
| | - Tatiana A Shumilova
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Tobias Rüffer
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Heinrich Lang
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Evgeny A Kataev
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
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9
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10
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Raj P, Singh A, Singh A, Singh A, Garg N, Kaur N, Singh N. Pyrophosphate Prompted Aggregation-Induced Emission: Chemosensor Studies, Cell Imaging, Cytotoxicity, and Hydrolysis of the Phosphoester Bond with Alkaline Phosphatase. Eur J Inorg Chem 2019. [DOI: 10.1002/ejic.201801173] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Pushap Raj
- Department of Chemistry; Indian Institute Technology Ropar; 140001 Punjab India
| | - Amanpreet Singh
- Department of Chemistry; Indian Institute Technology Ropar; 140001 Punjab India
| | - Ajnesh Singh
- Department of Applied Sciences and Humanities; Jawaharlal Nehru Govt. Engineering College; 175018 India
| | - Ashutosh Singh
- School of Basic Sciences; Indian Institute of Technology Mandi; 175005 India
| | - Neha Garg
- School of Basic Sciences; Indian Institute of Technology Mandi; 175005 India
| | - Navneet Kaur
- Department of Chemistry; Panjab University Chandigarh; 160014 Chandigarh India
| | - Narinder Singh
- Department of Chemistry; Indian Institute Technology Ropar; 140001 Punjab India
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11
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Tachallait H, Safir Filho M, Marzag H, Bougrin K, Demange L, Martin AR, Benhida R. A straightforward and versatile FeCl3 catalyzed Friedel–Crafts C-glycosylation process. Application to the synthesis of new functionalized C-nucleosides. NEW J CHEM 2019. [DOI: 10.1039/c8nj06300a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Rapid and straightforward access to C-nucleosides using an inexpensive FeCl3 catalyst.
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Affiliation(s)
- Hamza Tachallait
- Laboratoire de Chimie des Plantes et de Synthèse Organique et Bioorganique
- URAC23
- Faculté des Sciences
- 1014 Rabat
- Morocco
| | - Mauro Safir Filho
- Université Côte d’Azur
- CNRS
- Institut de Chimie de Nice UMR 7272
- 06108 Nice
- France
| | - Hamid Marzag
- Université Côte d’Azur
- CNRS
- Institut de Chimie de Nice UMR 7272
- 06108 Nice
- France
| | - Khalid Bougrin
- Laboratoire de Chimie des Plantes et de Synthèse Organique et Bioorganique
- URAC23
- Faculté des Sciences
- 1014 Rabat
- Morocco
| | - Luc Demange
- Université Côte d’Azur
- CNRS
- Institut de Chimie de Nice UMR 7272
- 06108 Nice
- France
| | - Anthony R. Martin
- Université Côte d’Azur
- CNRS
- Institut de Chimie de Nice UMR 7272
- 06108 Nice
- France
| | - Rachid Benhida
- Université Côte d’Azur
- CNRS
- Institut de Chimie de Nice UMR 7272
- 06108 Nice
- France
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12
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Agafontsev AM, Ravi A, Shumilova TA, Oshchepkov AS, Kataev EA. Molecular Receptors for Recognition and Sensing of Nucleotides. Chemistry 2018; 25:2684-2694. [PMID: 30289184 DOI: 10.1002/chem.201802978] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Revised: 10/05/2018] [Indexed: 12/15/2022]
Abstract
Nucleotides are constituents of nucleic acids and they have a variety of functions in cellular metabolism. Synthetic receptors and sensors are required to reveal the role of nucleotides in living organisms and mechanisms of signal transduction events. In recent years, a large number of nucleotide-selective synthetic receptors have been devised, which utilize different molecular designs and sensing mechanisms. This Minireview presents recent progress in the design of synthetic molecular receptors for selective recognition of nucleotides in aqueous solution. The binding properties of receptors and the origins of their selectivity for a particular nucleotide are discussed.
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Affiliation(s)
- Aleksandr M Agafontsev
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany.,N. N. Vorozhtsov Institute of Organic Chemistry SB RAS, 9 Lavrentiev Avenue, 630090, Novosibirsk, Russia.,Novosibirsk State University, Pirogova St. 1, 630090, Novosibirsk, Russia
| | - Anil Ravi
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Tatiana A Shumilova
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
| | - Aleksandr S Oshchepkov
- Peoples' Friendship University of Russia (RUDN University), Miklukho-Maklay St. 6, Moscow, 117198, Russia
| | - Evgeny A Kataev
- Institute of Chemistry, Technische Universität Chemnitz, 09107, Chemnitz, Germany
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13
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Singh H, Sharma R, Bhargava G, Kumar S, Singh P. ESIPT‐Based Dual Chemosensor for Sequential Detection of Cd
2+
/Zn
2+
and Nucleoside Triphosphates in Water: Application in Logic Gates. ChemistrySelect 2018. [DOI: 10.1002/slct.201801196] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Harminder Singh
- Department of ChemistryUGC Centre for advanced studies –IIGuru Nanak Dev University Amritsar 143005 India
| | - Rashmi Sharma
- Department of ChemistryTrinity College Jalandhar 144006 India
| | - Gaurav Bhargava
- Department of Chemical SciencesIK Gujral Punjab Technical University Kapurthala 144601 India
| | - Subodh Kumar
- Department of ChemistryUGC Centre for advanced studies –IIGuru Nanak Dev University Amritsar 143005 India
| | - Prabhpreet Singh
- Department of ChemistryUGC Centre for advanced studies –IIGuru Nanak Dev University Amritsar 143005 India
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14
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Bojtár M, Janzsó-Berend PZ, Mester D, Hessz D, Kállay M, Kubinyi M, Bitter I. An uracil-linked hydroxyflavone probe for the recognition of ATP. Beilstein J Org Chem 2018; 14:747-755. [PMID: 29719572 PMCID: PMC5905274 DOI: 10.3762/bjoc.14.63] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2017] [Accepted: 03/13/2018] [Indexed: 01/05/2023] Open
Abstract
Background: Nucleotides are essential molecules in living systems due to their paramount importance in various physiological processes. In the past years, numerous attempts were made to selectively recognize and detect these analytes, especially ATP using small-molecule fluorescent chemosensors. Despite the various solutions, the selective detection of ATP is still challenging due to the structural similarity of various nucleotides. In this paper, we report the conjugation of a uracil nucleobase to the known 4'-dimethylamino-hydroxyflavone fluorophore. Results: The complexation of this scaffold with ATP is already known. The complex is held together by stacking and electrostatic interactions. To achieve multi-point recognition, we designed the uracil-appended version of this probe to include complementary base-pairing interactions. The theoretical calculations revealed the availability of multiple complex structures. The synthesis was performed using click chemistry and the nucleotide recognition properties of the probe were evaluated using fluorescence spectroscopy. Conclusions: The first, uracil-containing fluorescent ATP probe based on a hydroxyflavone fluorophore was synthesized and evaluated. A selective complexation with ATP was observed and a ratiometric response in the excitation spectrum.
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Affiliation(s)
- Márton Bojtár
- Department of Organic Chemistry and Technology, Budapest University of Technology and Economics, 1521 Budapest, Hungary
| | - Péter Zoltán Janzsó-Berend
- Department of Organic Chemistry and Technology, Budapest University of Technology and Economics, 1521 Budapest, Hungary
| | - Dávid Mester
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, 1521 Budapest, Hungary
| | - Dóra Hessz
- Institute of Materials and Environmental Chemistry, Research Center for Natural Sciences, Hungarian Academy of Sciences, P. O. Box 286, 1519 Budapest, Hungary
| | - Mihály Kállay
- MTA-BME Lendület Quantum Chemistry Research Group, Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, 1521 Budapest, Hungary
| | - Miklós Kubinyi
- Institute of Materials and Environmental Chemistry, Research Center for Natural Sciences, Hungarian Academy of Sciences, P. O. Box 286, 1519 Budapest, Hungary
- Department of Physical Chemistry and Materials Science, Budapest University of Technology and Economics, 1521 Budapest, Hungary
| | - István Bitter
- Department of Organic Chemistry and Technology, Budapest University of Technology and Economics, 1521 Budapest, Hungary
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15
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Rhaman MM, Powell DR, Hossain MA. Supramolecular Assembly of Uridine Monophosphate (UMP) and Thymidine Monophosphate (TMP) with a Dinuclear Copper(II) Receptor. ACS OMEGA 2017; 2:7803-7811. [PMID: 29214233 PMCID: PMC5709781 DOI: 10.1021/acsomega.7b01293] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/03/2017] [Accepted: 10/31/2017] [Indexed: 05/14/2023]
Abstract
Understanding the intermolecular interactions between nucleotides and artificial receptors is crucial to understanding the role of nucleic acids in living systems. However, direct structural evidence showing precise interactions and bonding features of a nucleoside monophosphate (NMP) with a macrocycle-based synthetic molecule has not been provided so far. Herein, we present two novel crystal structures of uridine monophosphate (UMP) and thymidine monophosphate (TMP) complexes with a macrocycle-based dinuclear receptor. Structural characterization of these complexes reveals that the receptor recognizes UMP through coordinate-covalent interactions with phosphates and π-π stackings with nucleobases and TMP through coordinate-covalent interactions with phosphate groups. Furthermore, the receptor has been shown to effectively bind nucleoside monophosphates in the order of GMP > AMP > UMP > TMP > CMP in water at physiological pH, as investigated by an indicator displacement assay.
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Affiliation(s)
- Md Mhahabubur Rhaman
- Department
of Chemistry and Biochemistry, Jackson State
University, Jackson, Mississippi 39217, United States
| | - Douglas R. Powell
- Department
of Chemistry and Biochemistry, University
of Oklahoma, Norman, Oklahoma 73019, United
States
| | - Md. Alamgir Hossain
- Department
of Chemistry and Biochemistry, Jackson State
University, Jackson, Mississippi 39217, United States
- E-mail:
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16
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Sunnapu O, Kotla NG, Maddiboyina B, Marepally S, Shanmugapriya J, Sekar K, Singaravadivel S, Sivaraman G. Rhodamine-Based Fluorescent Turn-On Probe for Facile Sensing and Imaging of ATP in Mitochondria. ChemistrySelect 2017. [DOI: 10.1002/slct.201701149] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Omprakash Sunnapu
- Department of Chemistry; SSM Institute of Engineering and Technology; Dindigul-624002 India
- Department of Chemistry; University of College of Engineering; Anna university; Dindugul-624003 India
| | - Niranjan G. Kotla
- Institute for Stem Cell Biology and Regenerative Medicine; National Centre for Biological Sciences, GKVK campus; Bengaluru-560062 India
- Centre for Research in Medical Devices (CÚRAM); National University of Ireland Galway (NUI Galway); Galway Ireland
| | - Balaji Maddiboyina
- Siddharth Institute of Pharmaceutical Sciences, Narasaraopet; Guntur, Andhra Pradesh India
| | - Srujan Marepally
- Centre for Stem Cell Research; Christian Medical College Campus; Vellore-632002 India
| | | | - Karuppannan Sekar
- Department of Chemistry; University of College of Engineering; Anna university; Dindugul-624003 India
| | | | - Gandhi Sivaraman
- Institute for Stem Cell Biology and Regenerative Medicine; National Centre for Biological Sciences, GKVK campus; Bengaluru-560062 India
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17
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Liu Q, Zhao X, Hu Z, Zhao Z, Wang H. Synthesis and structural studies of N-heterocyclic carbene Ag(I) and Hg(II) complexes and recognition of dihydrogen phosphate anion. Sci Rep 2017; 7:7534. [PMID: 28790367 PMCID: PMC5548890 DOI: 10.1038/s41598-017-07961-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Accepted: 07/03/2017] [Indexed: 01/22/2023] Open
Abstract
Bis-benzimidazolium salt (S)-2,2'-bis[2″-(N-Et-benzimidazoliumyl)ethoxy]-1,1'-binaphthyl hexafluorophosphate [(S)-L1H2]·(PF6)2 and bis-imidazolium salts (S)-2,2'-bis[2″-(N-R-imidazoliumyl)ethoxy]-1,1'-binaphthyl hexafluorophosphate [(S)-L2H2]·(PF6)2 and [(S)-L3H2]·(PF6)2 (R = ethyl or benzyl), as well as their five N-heterocyclic carbene Hg(II) and Ag(I) complexes such as [(S)-L1Hg(HgBr4)] (1), [(S)-L2Hg(HgBr4)] (2), [(S)-L2Hg(HgI4)] (3), {[(S)-L2Ag](PF6)}n (4) and [(S)-L3Ag](PF6) (5) have been prepared and characterized. Each of complexes 1-3 consists of two rings (one 6-membered ring and one 11-membered ring), in which the oxygen atom in the ligand participates in coordination with Hg(II) ion. In complex 4, 1D helical polymeric chain is formed via biscarbene ligand (S)-L2 and Ag(I) ion. A 15-membered macrometallocycle is constructed through a ligand (S)-L3 and a Ag(I) ion in complex 5. Additionally, the selective recognition of H2PO4- using complex 5 as a receptor was investigated on the basis of fluorescence and UV/vis spectroscopic titrations. The results indicate that complex 5 can distinguish effectively H2PO4- from other anions.
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Affiliation(s)
- Qingxiang Liu
- Key Laboratory of Inorganic-Organic Hybrid Functional Materials Chemistry (Tianjin Normal University), Ministry of Education; Tianjin Key Laboratory of Structure and Performance for Functional Molecules; College of Chemistry, Tianjin Normal University, Tianjin, 300387, China.
| | - Xiaoqiang Zhao
- Key Laboratory of Inorganic-Organic Hybrid Functional Materials Chemistry (Tianjin Normal University), Ministry of Education; Tianjin Key Laboratory of Structure and Performance for Functional Molecules; College of Chemistry, Tianjin Normal University, Tianjin, 300387, China
| | - Zeliang Hu
- Key Laboratory of Inorganic-Organic Hybrid Functional Materials Chemistry (Tianjin Normal University), Ministry of Education; Tianjin Key Laboratory of Structure and Performance for Functional Molecules; College of Chemistry, Tianjin Normal University, Tianjin, 300387, China
| | - Zhixiang Zhao
- Key Laboratory of Inorganic-Organic Hybrid Functional Materials Chemistry (Tianjin Normal University), Ministry of Education; Tianjin Key Laboratory of Structure and Performance for Functional Molecules; College of Chemistry, Tianjin Normal University, Tianjin, 300387, China
| | - Hong Wang
- Key Laboratory of Inorganic-Organic Hybrid Functional Materials Chemistry (Tianjin Normal University), Ministry of Education; Tianjin Key Laboratory of Structure and Performance for Functional Molecules; College of Chemistry, Tianjin Normal University, Tianjin, 300387, China
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18
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Maity D, Li M, Ehlers M, Gigante A, Schmuck C. A metal-free fluorescence turn-on molecular probe for detection of nucleoside triphosphates. Chem Commun (Camb) 2017; 53:208-211. [PMID: 27918032 DOI: 10.1039/c6cc08386b] [Citation(s) in RCA: 47] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
We report a fluorescence probe 1, which contains a naphthalimide fluorophore with two symmetric peptidic arms equipped with a tailor-made anion-binding motif, the guanidiniocarbonyl pyrrole moiety, for the detection of nucleoside triphosphates. Upon binding to nucleoside triphosphates, especially ATP, 1 shows significant turn-on fluorescence response. Probe 1 can also be applied for the imaging of ATP in cells.
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Affiliation(s)
- Debabrata Maity
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| | - Mao Li
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| | - Martin Ehlers
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
| | | | - Carsten Schmuck
- Institute for Organic Chemistry, University of Duisburg-Essen, 45117, Essen, Germany.
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19
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Molina P, Zapata F, Caballero A. Anion Recognition Strategies Based on Combined Noncovalent Interactions. Chem Rev 2017; 117:9907-9972. [PMID: 28665114 DOI: 10.1021/acs.chemrev.6b00814] [Citation(s) in RCA: 241] [Impact Index Per Article: 34.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
This review highlights the most significant examples of an emerging field in the design of highly selective anion receptors. To date, there has been remarkable progress in the binding and sensing of anions. This has been driven in part by the discovery of ways to construct effective anion binding receptors using the dominant N-H functional groups and neutral and cationic C-H hydrogen bond donors, as well as underexplored strong directional noncovalent interactions such as halogen-bonding and anion-π interactions. In this review, we will describe a new and promising strategy for constructing anion binding receptors with distinct advantages arising from their elaborate design, incorporating multiple binding sites able to interact cooperatively with anions through these different kinds of noncovalent interactions. Comparisons with control species or solely hydrogen-bonding analogues reveal unique characteristics in terms of strength, selectivity, and interaction geometry, representing important advances in the rising field of supramolecular chemistry.
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Affiliation(s)
- Pedro Molina
- Departamento de Química Orgánica, Universidad de Murcia , Campus de Espinardo, E-30100 Murcia, Spain
| | - Fabiola Zapata
- Departamento de Química Orgánica, Universidad de Murcia , Campus de Espinardo, E-30100 Murcia, Spain
| | - Antonio Caballero
- Departamento de Química Orgánica, Universidad de Murcia , Campus de Espinardo, E-30100 Murcia, Spain
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20
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Terpyridyl oxovanadium(IV) complexes for DNA crosslinking and mito-targeted photocytotoxicity. J Inorg Biochem 2017; 174:45-54. [PMID: 28601723 DOI: 10.1016/j.jinorgbio.2017.05.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2017] [Revised: 05/27/2017] [Accepted: 05/30/2017] [Indexed: 12/29/2022]
Abstract
Oxovanadium(IV) complexes [VO(L1/L2)Cl2]n+ (1,2) of (anthracenyl)terpyridine (An-tpy as L1 in 1, n=0) and triphenylphosphonium-appended (anthracenyl)terpyridine (An-tpy-TPP+ as L2 in 2, n=1) were synthesized, characterized and their DNA crosslinking ability, photocytotoxicity in visible light and cellular localization in cancer cells studied. The bromide derivative of 2, viz. [VO(An-tpy-TPP)Br2]Br (3) is structurally characterized. The structure showed trans disposition of two halides in the coordination sphere and the TPP+ unit is a pendant to the terpyridyl ligand. The DNA melting and comet assay studies on the complexes suggest the formation of DNA crosslinks. Complexes 1 and 2 displayed ~10 fold increase in cytotoxicity on exposure to visible light (400-700nm) when compared to those in dark in HeLa and MCF-7 cells. FACScan (Fluorescence Associated Cell Sorter Scan) analysis showed cellular apoptosis when treated with the complex in visible light in comparison to their dark controls. Fluorescence microscopic studies using complex 2 revealed its mitochondrial localization within the cancer cells.
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21
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Zhu JH, Yu C, Chen Y, Shin J, Cao QY, Kim JS. A self-assembled amphiphilic imidazolium-based ATP probe. Chem Commun (Camb) 2017; 53:4342-4345. [PMID: 28367556 DOI: 10.1039/c7cc01346a] [Citation(s) in RCA: 44] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A novel amphiphilic imidazolium-based probe containing a dansyl fluorophore and a long cetyl chain has been developed for ATP recognition. The probe forms self-assembled micelle-like aggregates at low concentration in its aqueous solution and can selectively recognize ATP among other bioactive anions with a significant enhancement in fluorescence emission.
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Affiliation(s)
- Jiang-Hua Zhu
- Department of Chemistry, Nanchang University, Nanchang 330031, P. R. China.
| | - Chuan Yu
- Institute for Advanced Study, Nanchang University, Nanchang 330031, P. R. China
| | - Yong Chen
- Institute for Advanced Study, Nanchang University, Nanchang 330031, P. R. China
| | - Jinwoo Shin
- Department of Chemistry, Korea University, Seoul 02841, Korea.
| | - Qian-Yong Cao
- Department of Chemistry, Nanchang University, Nanchang 330031, P. R. China.
| | - Jong Seung Kim
- Department of Chemistry, Korea University, Seoul 02841, Korea.
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22
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Kumar R, Sandhu S, Singh P, Kumar S. Imidazolium Based Probes for Recognition of Biologically and Medically Relevant Anions. CHEM REC 2016; 17:441-471. [PMID: 27740733 DOI: 10.1002/tcr.201600108] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2016] [Indexed: 01/08/2023]
Abstract
The imidazolium derivatives due to their positive charge possess one of the most polarized and positively charged proton at C2-H to form strong ionic hydrogen bond (also termed as double ionic hydrogen bond) with anions and also provide opportunities for anion - π interactions with electron-deficient imidazolium ring. In the present review article, imidazolium based molecular probes for their ability to recognize inorganic anions like halides, cyanide, perchlorate, carboxylic acids, phosphate, sulfate etc. and their derived molecules viz. nucleotides, DNA, RNA, surfactants, proteins, etc have been discussed. The review covers the literature published after year 2009 and has > 130 references. The previous literature has already been discussed by Yoon et al. in two review articles published in Chem. Soc. Rev. 2006 and 2010.
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Affiliation(s)
- Rahul Kumar
- Department of Chemistry, UGC Centre for advanced studies -II, Guru Nanak Dev University, Amritsar, 143005, India
| | - Sana Sandhu
- Department of Chemistry, UGC Centre for advanced studies -II, Guru Nanak Dev University, Amritsar, 143005, India
| | - Prabhpreet Singh
- Department of Chemistry, UGC Centre for advanced studies -II, Guru Nanak Dev University, Amritsar, 143005, India
| | - Subodh Kumar
- Department of Chemistry, UGC Centre for advanced studies -II, Guru Nanak Dev University, Amritsar, 143005, India
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23
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Liu Y, Hu Y, Lee S, Lee D, Yoon J. Fluorescent and Colorimetric Chemosensors for Anions, Metal Ions, Reactive Oxygen Species, Biothiols, and Gases. B KOREAN CHEM SOC 2016. [DOI: 10.1002/bkcs.10926] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Yifan Liu
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 120-750 Korea
| | - Ying Hu
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 120-750 Korea
| | - Songyi Lee
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 120-750 Korea
| | - Dayoung Lee
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 120-750 Korea
| | - Juyoung Yoon
- Department of Chemistry and Nano Science; Ewha Womans University; Seoul 120-750 Korea
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24
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Kataev EA, Shumilova TA, Fiedler B, Anacker T, Friedrich J. Understanding Stacking Interactions between an Aromatic Ring and Nucleobases in Aqueous Solution: Experimental and Theoretical Study. J Org Chem 2016; 81:6505-14. [PMID: 27314892 DOI: 10.1021/acs.joc.6b01130] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Stacking interactions between aromatic compounds and nucleobases are crucial in recognition of nucleotides and nucleic acids, but a comprehensive understanding of the strength and selectivity of these interactions in aqueous solution has been elusive. To this end, model complexes have been designed and analyzed by experiment and theory. For the first time, stacking free energies between five nucleobases and anthracene were determined experimentally from thermodynamic double mutant cycles. Three different experimental methods were proposed and evaluated. The dye prefers to bind nucleobases in the order (kcal/mol): G (1.3) > T (0.9) > U (0.8) > C (0.5) > A (0.3). The respective trend of interaction free energies extracted from DFT calculations correlates to that obtained experimentally. Analysis of the data suggests that stacking interactions dominate over hydrophobic effects in an aqueous solution and can be predicted with DFT calculations.
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Affiliation(s)
- Evgeny A Kataev
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz , 09107 Chemnitz, Germany
| | - Tatiana A Shumilova
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz , 09107 Chemnitz, Germany
| | - Benjamin Fiedler
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz , 09107 Chemnitz, Germany
| | - Tony Anacker
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz , 09107 Chemnitz, Germany
| | - Joachim Friedrich
- Institute of Chemistry, Faculty of Natural Sciences, Technische Universität Chemnitz , 09107 Chemnitz, Germany
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25
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Amide‐Triazolium‐Appended Anthracenes for Turn‐On Fluorescence Sensing of Anions in Noncompetitive and Competitive Solvents. Chempluschem 2016; 81:406-413. [DOI: 10.1002/cplu.201500527] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2015] [Indexed: 11/07/2022]
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26
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Srivastava P, Razi SS, Ali R, Srivastav S, Patnaik S, Srikrishna S, Misra A. Highly sensitive cell imaging "Off-On" fluorescent probe for mitochondria and ATP. Biosens Bioelectron 2015; 69:179-85. [PMID: 25727034 DOI: 10.1016/j.bios.2015.02.028] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2014] [Revised: 02/15/2015] [Accepted: 02/16/2015] [Indexed: 01/19/2023]
Abstract
A smart Off-On molecular scaffold/fluorescent probe 1 has been designed and synthesized. The probe has shown considerable photostability, cell permeability, organelle specificity and selectivity for ATP. The multicolor live cell imaging experiments in HeLa cells showed high selectivity of probe 1 for mitochondria with fluorescence "turn-on" response. As a proof of concept and promising prospects for application in biological sciences probe 1 has been utilized to detect ATP sensitively in a partial aqueous medium and intracellularly in HeLa cells. The favorable interaction between triphosphate unit of ATP and piperazine N atoms of probe 1 is attributed to synergistic effects of H-bonding and electrostatic interactions that encouraged the CH-π and π→π stacking between anthracene and purine rings. Consequently, the observed enhanced "turn-on" emission and a naked-eye sensitive blue-green color in the medium is attributable to arrest in photoinduced electron transfer (PET) process.
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Affiliation(s)
- Priyanka Srivastava
- Department of Chemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, UP, India
| | - Syed S Razi
- Department of Chemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, UP, India
| | - Rashid Ali
- Department of Chemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, UP, India
| | - Saurabh Srivastav
- Department of Biochemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, UP, India
| | - Satyakam Patnaik
- Indian Institute of Toxicology and Research (IITR), Lucknow 226001, UP, India
| | - Saripella Srikrishna
- Department of Biochemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, UP, India
| | - Arvind Misra
- Department of Chemistry, Faculty of Science, Banaras Hindu University, Varanasi 221005, UP, India.
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27
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González-Mendoza L, Escorihuela J, Altava B, Burguete MI, Luis SV. Application of optically active chiral bis(imidazolium) salts as potential receptors of chiral dicarboxylate salts of biological relevance. Org Biomol Chem 2015; 13:5450-9. [DOI: 10.1039/c5ob00348b] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
New chiral ionic liquids as receptors for dicarboxylic acid derivatives.
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Affiliation(s)
| | - Jorge Escorihuela
- Laboratory of Organic Chemistry
- Wageningen University
- Wageningen
- The Netherlands
| | - Belén Altava
- Department of Inorganic and Organic Chemistry
- Universitat Jaume I
- 12071 Castellón
- Spain
| | - M. Isabel Burguete
- Department of Inorganic and Organic Chemistry
- Universitat Jaume I
- 12071 Castellón
- Spain
| | - Santiago V. Luis
- Department of Inorganic and Organic Chemistry
- Universitat Jaume I
- 12071 Castellón
- Spain
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28
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Tang JL, Li CY, Li YF, Zou CX. A ratiometric fluorescent probe with unexpected high selectivity for ATP and its application in cell imaging. Chem Commun (Camb) 2014; 50:15411-4. [PMID: 25350832 DOI: 10.1039/c4cc08044k] [Citation(s) in RCA: 78] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Naphthalimide-rhodamine compound (NR) is developed as a ratiometric fluorescent probe for ATP detection based on the FRET mechanism. It shows an unexpected high selectivity for ATP over other anions, especially organic phosphate anions, due to simultaneous interactions of two recognition sites, which benefits fluorescence imaging in living cells.
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Affiliation(s)
- Jia-Liang Tang
- Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, 411105, P. R. China.
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29
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Xu QC, Lv HJ, Lv ZQ, Liu M, Li YJ, Wang XF, Zhang Y, Xing GW. A pyrene-functionalized Zinc(ii)–BPEA complex: sensing and discrimination of ATP, ADP and AMP. RSC Adv 2014. [DOI: 10.1039/c4ra07923j] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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30
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Sreenivasu Mummidivarapu VV, Kumar Hinge V, Samanta K, Yarramala DS, Pulla Rao C. Supramolecular Complexation of Biological Phosphates with an Acyclic Triazolium-Linked Anthracenyl-1,3-Diconjugate of Calix[4]Arene: Synthesis, Characterization, Spectroscopy, Microscopy, and Computational Studies. Chemistry 2014; 20:14378-86. [DOI: 10.1002/chem.201403353] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2014] [Revised: 07/11/2014] [Indexed: 12/17/2022]
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31
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Faggi E, Porcar R, Bolte M, Luis SV, García-Verdugo E, Alfonso I. Chiral Imidazolium Receptors for Citrate and Malate: The Importance of the Preorganization. J Org Chem 2014; 79:9141-9. [DOI: 10.1021/jo5014977] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Enrico Faggi
- Departamento
de Química Biológica y Modelización Molecular, IQAC−CSIC, Jordi Girona, 16-26, E-08034 Barcelona, Spain
| | - Raúl Porcar
- Departamento
de Química Inorgánica y Orgánica, Universitat Jaume I, Av. de Vicent Sos Baynat s/n, E-12071 Castellón de la Plana, Spain
| | - Michael Bolte
- Institut
für Anorganische Chemie, J.-W.-Goethe-Universität, Max-von-Laue-Str.7, D-60438 Frankfurt/Main, Germany
| | - Santiago V. Luis
- Departamento
de Química Inorgánica y Orgánica, Universitat Jaume I, Av. de Vicent Sos Baynat s/n, E-12071 Castellón de la Plana, Spain
| | - Eduardo García-Verdugo
- Departamento
de Química Inorgánica y Orgánica, Universitat Jaume I, Av. de Vicent Sos Baynat s/n, E-12071 Castellón de la Plana, Spain
| | - Ignacio Alfonso
- Departamento
de Química Biológica y Modelización Molecular, IQAC−CSIC, Jordi Girona, 16-26, E-08034 Barcelona, Spain
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32
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Lei H, Liu J, Yan J, Lu S, Fang Y. Luminescent vesicular nanointerface: a highly selective and sensitive "turn-on" sensor for guanosine triphosphate. ACS APPLIED MATERIALS & INTERFACES 2014; 6:13642-13647. [PMID: 25102023 DOI: 10.1021/am5031424] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A novel amphiphilic Tb(3+) complex (TbL(3+)(I)) consisting of a +3 charged head and a hydrophobic alkyl chain has been developed. It spontaneously self-assembles in water and forms stable vesicles at neutral pH. TbL(3+)(I) has no aromatic groups (functioning as an antenna), and its intrinsic luminescence is thus minimized. These features lead to the self-assembling TbL(3+)(I) receptor molecules demonstrating an increased luminescence intensity upon binding of nucleotides. Upon addition of guanosine triphosphate (GTP), the luminescence from Tb(3+) was notably promoted (127-fold), as the light energy absorbed by the guanine group of GTP was efficiently transferred to the Tb(3+) center. In the case of guanosine diphosphate (GDP) and guanosine monophosphate (GMP), respectively, 78-fold and 43-fold increases in luminescence intensity were observed. This enhancement was less significant than that observed for GTP, due to fewer negative charges on GDP and GMP. No other nucleotides or the tested nonphosphorylated nucleosides affected the luminescence intensity to any notable extent. In marked contrast, all tested nucleotides, including guanine nucleotides, barely promoted the luminescence of molecularly dispersed receptors, TbL(3+)(II), indicating that the confinement and organization of molecules in a nanointerface play vital roles in improving the performance of a sensing system. This Tb(3+) complex nanointerface is successfully used for monitoring the GTP-to-GDP conversion.
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Affiliation(s)
- Hairui Lei
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry & Chemical Engineering, Shaanxi Normal University , Xi'an 710119, People's Republic of China
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33
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Hu P, Yang S, Feng G. Discrimination of adenine nucleotides and pyrophosphate in water by a zinc complex of an anthracene-based cyclophane. Org Biomol Chem 2014; 12:3701-6. [PMID: 24777701 DOI: 10.1039/c4ob00184b] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Combining metal-anion coordination and π-π stacking interactions, a zinc complex of a novel anthracene-based cyclophane was designed to recognise adenine nucleoside polyphosphates. This complex was found to show selective fluorescence enhancement for ATP, ADP, AMP and PPi in neutral aqueous solution. Among them, ADP induced the largest fluorescence change to the complex, while ATP showed the strongest binding affinity to the complex. This property was used to sense ATP in the presence of excess amounts of other phosphates such as ADP, AMP, PPi and Pi.
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Affiliation(s)
- Ping Hu
- Key Laboratory of Pesticide and Chemical Biology of Ministry of Education, College of Chemistry, Central China Normal University, 152 Luoyu Road, Wuhan 430079, P. R. China.
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34
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β-Biguanidinium-cyclodextrin: a supramolecular mimic of mitochondrial ADP/ATP carrier protein. Tetrahedron 2014. [DOI: 10.1016/j.tet.2014.02.041] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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35
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Chen HY, Zhao M, Li Y, Liu GF, Ji LN, Mao ZW. An anthracene-modified β-cyclodextrin that distinguishes adenosine phosphates fluorescently. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.01.119] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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36
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Dorazco-González A, Alamo MF, Godoy-Alcántar C, Höpfl H, Yatsimirsky AK. Fluorescent anion sensing by bisquinolinium pyridine-2,6-dicarboxamide receptors in water. RSC Adv 2014. [DOI: 10.1039/c3ra44363a] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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37
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Ahmad MW, Kim BY, Kim HS. Selective fluorescence sensing of salicylic acid using a simple pyrene appended imidazole receptor. NEW J CHEM 2014. [DOI: 10.1039/c3nj01339a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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38
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Kim D, Ryu HG, Ahn KH. Recent development of two-photon fluorescent probes for bioimaging. Org Biomol Chem 2014; 12:4550-66. [DOI: 10.1039/c4ob00431k] [Citation(s) in RCA: 160] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Fluorescent probes are essential tools for studying biological systems.
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Affiliation(s)
- Dokyoung Kim
- Department of Chemistry and Center for Electro-Photo Behaviors in Advanced Molecular Systems
- Gyungbuk, Korea 790-784
| | - Hye Gun Ryu
- Department of Chemistry and Center for Electro-Photo Behaviors in Advanced Molecular Systems
- Gyungbuk, Korea 790-784
| | - Kyo Han Ahn
- Department of Chemistry and Center for Electro-Photo Behaviors in Advanced Molecular Systems
- Gyungbuk, Korea 790-784
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39
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Kruss S, Hilmer AJ, Zhang J, Reuel NF, Mu B, Strano MS. Carbon nanotubes as optical biomedical sensors. Adv Drug Deliv Rev 2013; 65:1933-50. [PMID: 23906934 DOI: 10.1016/j.addr.2013.07.015] [Citation(s) in RCA: 204] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2013] [Revised: 07/16/2013] [Accepted: 07/18/2013] [Indexed: 01/11/2023]
Abstract
Biosensors are important tools in biomedical research. Moreover, they are becoming an essential part of modern healthcare. In the future, biosensor development will become even more crucial due to the demand for personalized-medicine, point-of care devices and cheaper diagnostic tools. Substantial advances in sensor technology are often fueled by the advent of new materials. Therefore, nanomaterials have motivated a large body of research and such materials have been implemented into biosensor devices. Among these new materials carbon nanotubes (CNTs) are especially promising building blocks for biosensors due to their unique electronic and optical properties. Carbon nanotubes are rolled-up cylinders of carbon monolayers (graphene). They can be chemically modified in such a way that biologically relevant molecules can be detected with high sensitivity and selectivity. In this review article we will discuss how carbon nanotubes can be used to create biosensors. We review the latest advancements of optical carbon nanotube based biosensors with a special focus on near-infrared (NIR)-fluorescence, Raman-scattering and fluorescence quenching.
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Affiliation(s)
- Sebastian Kruss
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, United States
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Liu X, Xu J, Lv Y, Wu W, Liu W, Tang Y. An ATP-selective, lanthanide complex luminescent probe. Dalton Trans 2013; 42:9840-6. [PMID: 23689488 DOI: 10.1039/c3dt50986a] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
A luminescent probe based on a europium complex is developed, which effectively distinguishes adenosine-5'-triphosphate (ATP) from adenosine diphosphate (ADP) and adenosine monophosphate (AMP) in pure water at pH 6.8. With a longer lifetime (in ms range), the probe is prospectively applied to biological systems to monitor ATP levels by completely removing the background fluorescence of other molecules.
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Affiliation(s)
- Xiao Liu
- State Key Laboratory of Applied Organic Chemistry and College of Chemistry and Chemical Engineering, Lanzhou University, Lanzhou, 730000, PR China
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41
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Zhang M, Ma WJ, He CT, Jiang L, Lu TB. Highly selective recognition and fluorescence imaging of adenosine polyphosphates in aqueous solution. Inorg Chem 2013; 52:4873-9. [PMID: 23560560 DOI: 10.1021/ic302435g] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
The design and synthesis of chemosensors for the recognition of a certain nucleoside polyphosphate among various structurally similar nucleoside polyphosphates remain a fundamental challenge. Herein, we report the new fluorescent chemosensor [Zn2L](ClO4)4 (1; L = (3,6,10,13,17,20,24,27-octaaza-1,15(2,6)-dipyridina-8,22(9,10)-dianthracenacyclooctacosaphane), which can selectively recognize adenosine polyphosphates (ATP and ADP) among various nucleoside polyphosphates, with a large fluorescence enhancement (Fmax/F0 = 70 and 80 for ATP and ADP, respectively) and strong binding affinity (K = 3.1 × 10(11) M(-1) for [Zn2HL(H-1ATP)2](-), 2.8 × 10(11) M(-1) for [Zn2L(H-1ATP)2](2-), and 1.5 × 10(13) M(-1) for [Zn2L(H-1ADP)2](2-)) in aqueous solution at physiological pH 7.40. The structure of [Zn2L](P2O7) (2) was investigated, which shows that μ2-pyrophosphate anions alternately link [Zn2L](4+) cations to generate a 1D coordination polymer. The results of (31)P NMR studies and DFT calculations reveal that the two Zn(II) ions in 1 can interact with ATP/ADP anions through coordination interactions between Zn(II) and the polyphosphate groups, and two anthracene moieties in 1 can interact with adenine groups from two ATP or ADP anions through stacking interactions to form a sandwichlike structure. These multiple recognition interactions between 1 and ATP/ADP enhance the affinity and selectivity of 1 toward ATP/ADP. Due to its highly selective and sensitive ability to detect adenosine polyphosphates, 1 was successfully applied to fluorescence imaging for ATP and ADP in living cells, demonstrating the potential utility of 1 as a fluorescent chemosensor for detecting ATP and ADP.
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Affiliation(s)
- Mei Zhang
- MOE Key Laboratory of Bioinorganic and Synthetic Chemistry, School of Chemistry and Chemical Engineering, Sun Yat-Sen University, Guangzhou 510275, People's Republic of China
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42
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Ahmad H, Hazel BW, Meijer AJHM, Thomas JA, Wilkinson KA. A self-assembled luminescent host that selectively senses ATP in water. Chemistry 2013; 19:5081-7. [PMID: 23426797 DOI: 10.1002/chem.201203603] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2012] [Indexed: 11/12/2022]
Abstract
Metal-ion-directed self-assembly has been used to construct kinetically inert, water-soluble heterometallic Ru2Re2 hosts that are potential sensors for bioanions. A previously reported metallomacrocycle and a new derivative synthesised by this approach are found to be general sensors for bioanions in water, showing an "off-on" luminescent change that is selective for nucleotides over uncharged nucleobases. Through a change in the ancillary ligands coordinated to the ruthenium centres of the host, an "off-on" sensor has been produced. Whilst this host only shows a modest enhancement in binding affinities for nucleotides relative to the other two host systems, its sensing response is much more specific. Although a distinctive "off-on" luminescence response is observed for the addition of adenosine triphosphosphate (ATP), related structures such as adenine and guanosine triphosphate (GTP) do not induce any emission change in the host. Detailed and demanding DFT studies on the ATP- and GTP-bound host-guest complexes reveal subtle differences in their geometries that modulate the stacking interactions between the nucleotide guests and the ancillary ligands of the host. It is suggested that this change in stacking geometries affects solvent accessibility to the binding pocket of the host and thus leads to observed difference in the host luminescence response to the guests.
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Affiliation(s)
- Haslina Ahmad
- Department of Chemistry, University of Sheffield, Sheffield, S3 7HF, UK
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Santos-Figueroa LE, Moragues ME, Climent E, Agostini A, Martínez-Máñez R, Sancenón F. Chromogenic and fluorogenic chemosensors and reagents for anions. A comprehensive review of the years 2010-2011. Chem Soc Rev 2013; 42:3489-613. [PMID: 23400370 DOI: 10.1039/c3cs35429f] [Citation(s) in RCA: 361] [Impact Index Per Article: 32.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
This review focuses on examples reported in the years 2010-2011 dealing with the design of chromogenic and fluorogenic chemosensors or reagents for anions.
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Affiliation(s)
- Luis E Santos-Figueroa
- Centro Interuniversitario de Reconocimiento Molecular y Desarrollo Tecnológico, (IDM), Unidad Mixta Universidad Politécnica de Valencia - Universitat de València, Spain
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Wang F, Moon JH, Nandhakumar R, Kang B, Kim D, Kim KM, Lee JY, Yoon J. Zn2+-induced conformational changes in a binaphthyl-pyrene derivative monitored by using fluorescence and CD spectroscopy. Chem Commun (Camb) 2013; 49:7228-30. [DOI: 10.1039/c3cc43739f] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
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45
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Natarajan P, Schmittel M. 9,10-Diarylanthracenes as Stable Electrochemiluminescent Emitters in Water. J Org Chem 2012; 77:8669-77. [DOI: 10.1021/jo301616t] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Affiliation(s)
- Palani Natarajan
- Center of Micro- and Nanochemistry and Engineering,
Organische Chemie I, Universität Siegen, Adolf-Reichwein-Straße 2, D-57068 Siegen, Germany
| | - Michael Schmittel
- Center of Micro- and Nanochemistry and Engineering,
Organische Chemie I, Universität Siegen, Adolf-Reichwein-Straße 2, D-57068 Siegen, Germany
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46
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Kim HN, Lee EH, Xu Z, Kim HE, Lee HS, Lee JH, Yoon J. A pyrene-imidazolium derivative that selectively Recognizes G-Quadruplex DNA. Biomaterials 2012; 33:2282-8. [DOI: 10.1016/j.biomaterials.2011.11.073] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2011] [Accepted: 11/25/2011] [Indexed: 01/06/2023]
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47
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Rao AS, Kim D, Nam H, Jo H, Kim KH, Ban C, Ahn KH. A turn-on two-photon fluorescent probe for ATP and ADP. Chem Commun (Camb) 2012; 48:3206-8. [PMID: 22331239 DOI: 10.1039/c2cc17629g] [Citation(s) in RCA: 105] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
An acedan derivative containing Zn(II)-DPA has been developed as a two-photon probe for nucleoside phosphates, which shows enhanced fluorescence toward ATP and ADP at physiological pH 7.4 among other competing anions including AMP; the probe is permeable to cell membranes and thus can be directly used for two-photon imaging of ATP and ADP in live cells.
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Affiliation(s)
- Alla Sreenivasa Rao
- Department of Chemistry and the Center for Electro-Photo Behaviors in Advanced Molecular Systems, POSTECH, San 31, Hyoja-dong, Pohang, 790-784, Republic of Korea
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48
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Jeon H, Lee S, Li Y, Park S, Yoon J. Conjugated polydiacetylenes bearing quaternary ammonium groups as a dual colorimetric and fluorescent sensor for ATP. ACTA ACUST UNITED AC 2012. [DOI: 10.1039/c2jm14996f] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
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49
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Jung JY, Jun EJ, Kwon YU, Yoon J. Recognition of myo-inositol 1,4,5-trisphosphate using a fluorescent imidazolium receptor. Chem Commun (Camb) 2012; 48:7928-30. [DOI: 10.1039/c2cc33717g] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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50
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Mahapatra AK, Hazra G, Sahoo P. First theophylline-based ratiometric fluorescent synthetic receptor for selective recognition of dihydrogenphosphate and biological phosphate ions. Bioorg Med Chem Lett 2011; 22:1358-64. [PMID: 22237252 DOI: 10.1016/j.bmcl.2011.12.075] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2011] [Revised: 11/28/2011] [Accepted: 12/13/2011] [Indexed: 11/29/2022]
Abstract
We have developed a new ratiometric fluorescent chemosensor 1 based on xanthine alkaloid theophylline moiety for the detection of dihydrogen phosphate and ATP. The chemosensor 1 selectively recognizes tetrabutylammonium dihydrogen phosphate in CH(3)CN/H(2)O (9:1) by exhibiting a significant decrease in the emission of naphthalene and its sensing properties regarding ATP and other related phosphate species were evaluated. The anion binding properties of 1 were evaluated by (1)H NMR, UV-vis, and fluorescence spectroscopic methods.
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Affiliation(s)
- Ajit K Mahapatra
- Department of Chemistry, Bengal Engineering and Science University, Shibpur, Howrah 711103, India.
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