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Dumez JN. NMR methods for the analysis of mixtures. Chem Commun (Camb) 2022; 58:13855-13872. [PMID: 36458684 PMCID: PMC9753098 DOI: 10.1039/d2cc05053f] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Accepted: 10/19/2022] [Indexed: 07/31/2023]
Abstract
NMR spectroscopy is a powerful approach for the analysis of mixtures. Its usefulness arises in large part from the vast landscape of methods, and corresponding pulse sequences, that have been and are being designed to tackle the specific properties of mixtures of small molecules. This feature article describes a selection of methods that aim to address the complexity, the low concentrations, and the changing nature that mixtures can display. These notably include pure-shift and diffusion NMR methods, hyperpolarisation methods, and fast 2D NMR methods such as ultrafast 2D NMR and non-uniform sampling. Examples or applications are also described, in fields such as reaction monitoring and metabolomics, to illustrate the relevance and limitations of different methods.
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Lhoste C, Lorandel B, Praud C, Marchand A, Mishra R, Dey A, Bernard A, Dumez JN, Giraudeau P. Ultrafast 2D NMR for the analysis of complex mixtures. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2022; 130-131:1-46. [PMID: 36113916 DOI: 10.1016/j.pnmrs.2022.01.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Revised: 01/21/2022] [Accepted: 01/23/2022] [Indexed: 06/15/2023]
Abstract
2D NMR is extensively used in many different fields, and its potential for the study of complex biochemical or chemical mixtures has been widely demonstrated. 2D NMR gives the ability to resolve peaks that overlap in 1D spectra, while providing both structural and quantitative information. However, complex mixtures are often analysed in situations where the data acquisition time is a crucial limitation, due to an ongoing chemical reaction or a moving sample from a hyphenated technique, or to the high-throughput requirement associated with large sample collections. Among the great diversity of available fast 2D methods, ultrafast (or single-scan) 2D NMR is probably the most general and versatile approach for complex mixture analysis. Indeed, ultrafast NMR has undergone an impressive number of methodological developments that have helped turn it into an efficient analytical tool, and numerous applications to the analysis of mixtures have been reported. This review first summarizes the main concepts, features and practical limitations of ultrafast 2D NMR, as well as the methodological developments that improved its analytical potential. Then, a detailed description of the main applications of ultrafast 2D NMR to mixture analysis is given. The two major application fields of ultrafast 2D NMR are first covered, i.e., reaction/process monitoring and metabolomics. Then, the potential of ultrafast 2D NMR for the analysis of hyperpolarized mixtures is described, as well as recent developments in oriented media. This review focuses on high-resolution liquid-state 2D experiments (including benchtop NMR) that include at least one spectroscopic dimension (i.e., 2D spectroscopy and DOSY) but does not cover in depth applications without spectral resolution and/or in inhomogeneous fields.
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Affiliation(s)
- Célia Lhoste
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | | | - Clément Praud
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Achille Marchand
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Rituraj Mishra
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Arnab Dey
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
| | - Aurélie Bernard
- Nantes Université, CNRS, CEISAM UMR 6230, Nantes F-44000, France
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Kostoudi S, Pampalakis G. Improvements, Variations and Biomedical Applications of the Michaelis-Arbuzov Reaction. Int J Mol Sci 2022; 23:ijms23063395. [PMID: 35328816 PMCID: PMC8955222 DOI: 10.3390/ijms23063395] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2022] [Revised: 03/11/2022] [Accepted: 03/15/2022] [Indexed: 01/27/2023] Open
Abstract
Compounds bearing the phosphorus–carbon (P–C) bond have important pharmacological, biochemical, and toxicological properties. Historically, the most notable reaction for the formation of the P–C bond is the Michaelis–Arbuzov reaction, first described in 1898. The classical Michaelis–Arbuzov reaction entails a reaction between an alkyl halide and a trialkyl phosphite to yield a dialkylalkylphosphonate. Nonetheless, deviations from the classical mechanisms and new modifications have appeared that allowed the expansion of the library of reactants and consequently the chemical space of the yielded products. These involve the use of Lewis acid catalysts, green methods, ultrasound, microwave, photochemically-assisted reactions, aryne-based reactions, etc. Here, a detailed presentation of the Michaelis–Arbuzov reaction and its developments and applications in the synthesis of biomedically important agents is provided. Certain examples of such applications include the development of alkylphosphonofluoridates as serine hydrolase inhibitors and activity-based probes, and the P–C containing antiviral and anticancer agents.
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Chan CK, Chung YH, Wang CC. Acid-controlled multicomponent selective synthesis of 2,4,6-triaryl pyridines and pyrimidines by using hexamethyldisilazane as a nitrogen source under microwave irradiation. RSC Adv 2022; 12:27281-27291. [PMID: 36276015 PMCID: PMC9513438 DOI: 10.1039/d2ra04739j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Accepted: 09/20/2022] [Indexed: 12/02/2022] Open
Abstract
An efficient and general protocol for the synthesis of functionalized 2,4,6-triaryl pyridines and pyrimidines was developed from commercially available aromatic ketones, aldehydes and hexamethyldisilazane (HMDS) as a nitrogen source under microwave irradiation. In this multicomponent synthetic route, Lewis acids play an important role in selectively synthesizing six-membered heterocycles, including pyridines (1N) and pyrimidines (2N), by involving [2 + 1 + 2 + 1] or [2 + 1 + 1 + 1 + 1] annulated processes. Synthesis of pyrimidines and pyridines from commercially available ketones and aldehydes by using hexamethyldisilazane as a nitrogen source and controlled by acids under microwave irradiation.![]()
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Affiliation(s)
- Chieh-Kai Chan
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
| | - Yi-Hsiu Chung
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
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Kolodiazhnyi OI. Stereochemistry, mechanisms and applications of electrophilic reactions of organophosphorus compounds. RUSSIAN CHEMICAL REVIEWS 2020. [DOI: 10.1070/rcr4910] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Ding Y, Ma R, Hider RC, Ma Y. Acid‐Catalyzed Pseudo Five‐Component Annulation for a General One‐Pot Synthesis of 2,4,6‐Triaryl Pyrimidines. ASIAN J ORG CHEM 2020. [DOI: 10.1002/ajoc.201900700] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Yuxin Ding
- School of Pharmaceutical and Chemical EngineeringTaizhou University Taizhou 318000 P. R. China
- School of Pharmaceutical ScienceZhejiang Chinese Medical University Hangzhou 310053 P R China
| | - Renchao Ma
- School of Pharmaceutical and Chemical EngineeringTaizhou University Taizhou 318000 P. R. China
| | - Robert C. Hider
- Institute of Pharmaceutical ScienceKing's College London Franklin-Wilkins Building Stamford Street London SE1 9NH UK
| | - Yongmin Ma
- School of Pharmaceutical and Chemical EngineeringTaizhou University Taizhou 318000 P. R. China
- School of Pharmaceutical ScienceZhejiang Chinese Medical University Hangzhou 310053 P R China
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Abstract
This review is devoted to the theoretic and synthetic aspects of asymmetric electrophilic substitution reactions at the stereogenic phosphorus center. The stereochemistry and mechanisms of electrophilic reactions are discussed—the substitution, addition and addition-elimination of many important reactions. The reactions of bimolecular electrophilic substitution SE2(P) proceed stereospecifically with the retention of absolute configuration at the phosphorus center, in contrast to the reactions of bimolecular nucleophilic substitution SN2(P), proceeding with inversion of absolute configuration. This conclusion was made based on stereochemical analysis of a wide range of trivalent phosphorus reactions with typical electrophiles and investigation of examples of a sizeable number of diverse compounds. The combination of stereospecific electrophilic reactions and stereoselective nucleophilic reactions is useful and promising for the further development of organophosphorus chemistry. The study of phosphoryl group transfer reactions is important for biological and molecular chemistry, as well as in studying mechanisms of chemical processes involving organophosphorus compounds. New versions of asymmetric electrophilic reactions applicable for the synthesis of enantiopure P-chiral secondary and tertiary phosphines are discussed.
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Jacquemmoz C, Giraud F, Dumez JN. Online reaction monitoring by single-scan 2D NMR under flow conditions. Analyst 2020; 145:478-485. [DOI: 10.1039/c9an01758e] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Single-scan 2D NMR based on spatial encoding can be used to monitor chemical reactions with a flow unit in realistic reaction conditions.
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Affiliation(s)
| | - François Giraud
- ICSN
- CNRS UPR2301
- Univ. Paris Sud
- Université Paris-Saclay
- 91190 Gif sur Yvette
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Dumez JN. Spatial encoding and spatial selection methods in high-resolution NMR spectroscopy. PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY 2018; 109:101-134. [PMID: 30527133 DOI: 10.1016/j.pnmrs.2018.08.001] [Citation(s) in RCA: 44] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2018] [Revised: 08/01/2018] [Accepted: 08/01/2018] [Indexed: 06/09/2023]
Abstract
A family of high-resolution NMR methods share the common concept of acquiring in parallel different sub-experiments in different spatial regions of the NMR tube. These spatial encoding and spatial selection methods were for the most part introduced independently from each other and serve different purposes, but they share common ingredients, often derived from magnetic resonance imaging, and they all benefit from a greatly improved time-efficiency. This review article provides a description of several spatial encoding and spatial selection methods, including single-scan multidimensional experiments (ultrafast 2D NMR, DOSY, Z spectroscopy, inversion recovery and Laplace NMR), pure shift and selective refocusing experiments (including Zangger-Sterk decoupling, G-SERF and PSYCHE), a Z filter, and fast-pulsing slice-selective experiments. Some key elements for spatial parallelisation are introduced and when possible a common framework is used for the analysis of each method. Sensitivity considerations are discussed, and a selection of applications is analysed to illustrate which questions can be answered thanks to spatial encoding and spatial selection methods, and discuss the perspectives for future developments and applications.
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Affiliation(s)
- Jean-Nicolas Dumez
- Institut de Chimie des Substances Naturelles, CNRS UPR2301, Univ. Paris Sud, Université Paris-Saclay, Avenue de la Terrasse, 91190 Gif-sur-Yvette, France.
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Su L, Sun K, Pan N, Liu L, Sun M, Dong J, Zhou Y, Yin SF. Cyclization of Ketones with Nitriles under Base: A General and Economical Synthesis of Pyrimidines. Org Lett 2018; 20:3399-3402. [DOI: 10.1021/acs.orglett.8b01324] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Lebin Su
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Kang Sun
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Neng Pan
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Long Liu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Mengli Sun
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Jianyu Dong
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Yongbo Zhou
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Shuang-Feng Yin
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
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Sevrain CM, Berchel M, Couthon H, Jaffrès PA. Phosphonic acid: preparation and applications. Beilstein J Org Chem 2017; 13:2186-2213. [PMID: 29114326 PMCID: PMC5669239 DOI: 10.3762/bjoc.13.219] [Citation(s) in RCA: 78] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Accepted: 09/19/2017] [Indexed: 12/26/2022] Open
Abstract
The phosphonic acid functional group, which is characterized by a phosphorus atom bonded to three oxygen atoms (two hydroxy groups and one P=O double bond) and one carbon atom, is employed for many applications due to its structural analogy with the phosphate moiety or to its coordination or supramolecular properties. Phosphonic acids were used for their bioactive properties (drug, pro-drug), for bone targeting, for the design of supramolecular or hybrid materials, for the functionalization of surfaces, for analytical purposes, for medical imaging or as phosphoantigen. These applications are covering a large panel of research fields including chemistry, biology and physics thus making the synthesis of phosphonic acids a determinant question for numerous research projects. This review gives, first, an overview of the different fields of application of phosphonic acids that are illustrated with studies mainly selected over the last 20 years. Further, this review reports the different methods that can be used for the synthesis of phosphonic acids from dialkyl or diaryl phosphonate, from dichlorophosphine or dichlorophosphine oxide, from phosphonodiamide, or by oxidation of phosphinic acid. Direct methods that make use of phosphorous acid (H3PO3) and that produce a phosphonic acid functional group simultaneously to the formation of the P-C bond, are also surveyed. Among all these methods, the dealkylation of dialkyl phosphonates under either acidic conditions (HCl) or using the McKenna procedure (a two-step reaction that makes use of bromotrimethylsilane followed by methanolysis) constitute the best methods to prepare phosphonic acids.
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Affiliation(s)
- Charlotte M Sevrain
- CEMCA UMR CNRS 6521, Université de Brest, IBSAM. 6 Avenue Victor Le Gorgeu, 29238 Brest, France
| | - Mathieu Berchel
- CEMCA UMR CNRS 6521, Université de Brest, IBSAM. 6 Avenue Victor Le Gorgeu, 29238 Brest, France
| | - Hélène Couthon
- CEMCA UMR CNRS 6521, Université de Brest, IBSAM. 6 Avenue Victor Le Gorgeu, 29238 Brest, France
| | - Paul-Alain Jaffrès
- CEMCA UMR CNRS 6521, Université de Brest, IBSAM. 6 Avenue Victor Le Gorgeu, 29238 Brest, France
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Herrera A, Fernández-Valle E, Martínez-Álvarez R, Molero-Vílchez D, Pardo-Botero ZD, Sáez-Barajas E. Monitoring organic reactions by UF-NMR spectroscopy. MAGNETIC RESONANCE IN CHEMISTRY : MRC 2015; 53:952-970. [PMID: 25998506 DOI: 10.1002/mrc.4240] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2015] [Revised: 02/26/2015] [Accepted: 03/03/2015] [Indexed: 06/04/2023]
Abstract
Standard 2D NMR experiments suffer from the many t1 increments needed for spectra with sufficient digital resolution in the indirect dimension. Despite the different methodological approaches to overcome this problem, these increments have prevented studies of fast reactions. The development of ultrafast NMR (UF-NMR) has decisively speeded up the time scale of standard NMR to allow the study of organic reactions as they happen in real time to reveal mechanistic details. This mini-review summarizes the results achieved in monitoring organic reactions through this exciting technique.
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Affiliation(s)
- Antonio Herrera
- CAI-RMN, Universidad Complutense de Madrid, Madrid, Spain
- Departamento de Química Orgánica I, Facultad de Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | | | - Roberto Martínez-Álvarez
- Departamento de Química Orgánica I, Facultad de Químicas, Universidad Complutense de Madrid, Madrid, Spain
| | | | - Zulay D Pardo-Botero
- CAI-RMN, Universidad Complutense de Madrid, Madrid, Spain
- Departamento de Química Orgánica I, Facultad de Químicas, Universidad Complutense de Madrid, Madrid, Spain
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