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Zheltikov AM. Light-induced uncertainty and information limits of optical neural recording. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 251:119351. [PMID: 33486433 DOI: 10.1016/j.saa.2020.119351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 12/14/2020] [Accepted: 12/16/2020] [Indexed: 06/12/2023]
Abstract
Cutting-edge methods of laser microscopy combined with fluorescent protein engineering and spectral analysis provide a unique resource for high-resolution neuroimaging, enabling a high-fidelity, high-contrast detection of fine structural details of neural cells and intracellular compartments. In addition to their extraordinary imaging abilities in real space, such methods can help resolve the neural states in a multidimensional space of neural responses whereby individual neurons and neural populations encode information on external stimuli. This study shows, however, that laser-induced biochemical processes in neural cells can give rise to an uncertainty of neural states, setting an upper bound on the information that optical measurements can provide on neural states, neural encodings, and neural dynamics. Comparison of absorbed laser power with the native biochemical energy budget of neuronal firing suggests that each readout photon in optical recording comes at a cost of precision of neural encoding and a loss of information encoded by the neural response. A quantitative measure for such a measurement-induced neural uncertainty can be defined, as this study shows, in terms of the Fisher information, relating the lower bound of this uncertainty to the loss of the Shannon information capacity of neural states.
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Affiliation(s)
- Aleksei M Zheltikov
- Physics Department, M.V. Lomonosov Moscow State University, Moscow 119992, Russia; Institute for Quantum Science and Engineering, Department of Physics and Astronomy, Texas A&M University, College Station, TX 77843, USA; Russian Quantum Center, Skolkovo, Moscow Region 143025, Russia; Kazan Quantum Center, A.N. Tupolev Kazan National Research Technical University, 420126 Kazan, Russia
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Hashimoto H, Uragami C, Yukihira N, Gardiner AT, Cogdell RJ. Understanding/unravelling carotenoid excited singlet states. J R Soc Interface 2018; 15:20180026. [PMID: 29643225 PMCID: PMC5938589 DOI: 10.1098/rsif.2018.0026] [Citation(s) in RCA: 52] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2018] [Accepted: 03/16/2018] [Indexed: 11/12/2022] Open
Abstract
Carotenoids are essential light-harvesting pigments in natural photosynthesis. They absorb in the blue-green region of the solar spectrum and transfer the absorbed energy to (bacterio-)chlorophylls, and thus expand the wavelength range of light that is able to drive photosynthesis. This process is an example of singlet-singlet excitation energy transfer, and carotenoids serve to enhance the overall efficiency of photosynthetic light reactions. The photochemistry and photophysics of carotenoids have often been interpreted by referring to those of simple polyene molecules that do not possess any functional groups. However, this may not always be wise because carotenoids usually have a number of functional groups that induce the variety of photochemical behaviours in them. These differences can also make the interpretation of the singlet excited states of carotenoids very complicated. In this article, we review the properties of the singlet excited states of carotenoids with the aim of producing as coherent a picture as possible of what is currently known and what needs to be learned.
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Affiliation(s)
- Hideki Hashimoto
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Chiasa Uragami
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Nao Yukihira
- Department of Applied Chemistry for Environment, School of Science and Technology, Kwansei Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
| | - Alastair T Gardiner
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
| | - Richard J Cogdell
- Institute of Molecular, Cell and Systems Biology, College of Medical Veterinary and Life Sciences, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
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Kosumi D, Nishiguchi T, Sugisaki M, Hashimoto H. Ultrafast coherent spectroscopic investigation on photosynthetic pigment chlorophyll a utilizing 20 fs pulses. J Photochem Photobiol A Chem 2015. [DOI: 10.1016/j.jphotochem.2015.06.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Natural and artificial light-harvesting systems utilizing the functions of carotenoids. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY C-PHOTOCHEMISTRY REVIEWS 2015. [DOI: 10.1016/j.jphotochemrev.2015.07.004] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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Hashimoto H, Sugisaki M, Yoshizawa M. Ultrafast time-resolved vibrational spectroscopies of carotenoids in photosynthesis. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2014; 1847:69-78. [PMID: 25223589 DOI: 10.1016/j.bbabio.2014.09.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2014] [Revised: 08/22/2014] [Accepted: 09/05/2014] [Indexed: 11/16/2022]
Abstract
This review discusses the application of time-resolved vibrational spectroscopies to the studies of carotenoids in photosynthesis. The focus is on the ultrafast time regime and the study of photophysics and photochemistry of carotenoids by femtosecond time-resolved stimulated Raman and four-wave mixing spectroscopies. This article is part of a Special Issue entitled: Vibrational spectroscopies and bioenergetic systems.
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Affiliation(s)
- Hideki Hashimoto
- The Osaka City University Advanced Research Institute for Natural Science and Technology (OCARINA), Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan; Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan.
| | - Mitsuru Sugisaki
- Department of Physics, Graduate School of Science, Osaka City University, 3-3-138 Sugimoto, Sumiyoshi-ku, Osaka 558-8585, Japan
| | - Masayuki Yoshizawa
- Department of Physics, Graduate School of Science, Tohoku University, Aramaki-aza-aoba, Aoba-ku, Sendai 980-8578, Japan
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Stauffer HU, Miller JD, Slipchenko MN, Meyer TR, Prince BD, Roy S, Gord JR. Time- and frequency-dependent model of time-resolved coherent anti-Stokes Raman scattering (CARS) with a picosecond-duration probe pulse. J Chem Phys 2014; 140:024316. [DOI: 10.1063/1.4860475] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023] Open
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Namboodiri V, Namboodiri M, Flachenecker G, Materny A. Two-photon resonances in femtosecond time-resolved four-wave mixing spectroscopy: β-carotene. J Chem Phys 2010; 133:054503. [DOI: 10.1063/1.3466750] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Kosumi D, Abe K, Karasawa H, Fujiwara M, Cogdell RJ, Hashimoto H, Yoshizawa M. Ultrafast relaxation kinetics of the dark S1 state in all-trans-β-carotene explored by one- and two-photon pump–probe spectroscopy. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2009.12.013] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Prince BD, Chakraborty A, Prince BM, Stauffer HU. Development of simultaneous frequency- and time-resolved coherent anti-Stokes Raman scattering for ultrafast detection of molecular Raman spectra. J Chem Phys 2006; 125:44502. [PMID: 16942151 DOI: 10.1063/1.2219439] [Citation(s) in RCA: 69] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The development of a time-resolved coherent anti-Stokes Raman scattering (CARS) variant for use as a probe of excited electronic state Raman-active modes following excitation with an ultrafast pump pulse is detailed. Application of this technique involves a combination of broadband fs-time scale pulses and a narrowband pulse of ps duration that allows multiplexed detection of the CARS signal, permitting direct observation of molecular Raman frequencies and intensities with time resolution dictated by the broadband pulses. Thus, this nonlinear optical probe, designated fs/ps CARS, is suitable for observation of Raman spectral evolution following excitation with a pump pulse. Because of the spatial separation of the CARS output signal relative to the three input beams inherent in a folded BOXCARS arrangement, this technique is particularly amenable to probing low-frequency vibrational modes, which play a significant role in accepting vibrational energy during intramolecular vibrational energy redistribution within electronically excited states. Additionally, this spatial separation allows discrimination against strong fluorescence signal, as demonstrated in the case of rhodamine 6G.
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Affiliation(s)
- Benjamin D Prince
- Department of Chemistry, Iowa State University, Ames, Iowa 50011-3111, USA
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Dietzek B, Kiefer W, Blumhoff J, Böttcher L, Rau S, Walther D, Uhlemann U, Schmitt M, Popp J. Ultrafast Excited-State Excitation Dynamics in a Quasi-Two-Dimensional Light-Harvesting Antenna Based on Ruthenium(II) and Palladium(II) Chromophores. Chemistry 2006; 12:5105-15. [PMID: 16628758 DOI: 10.1002/chem.200501093] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A detailed study on the excited-state-excitation migration taking place within the tetranuclear complex [{(tbbpy)(2)Ru(tmbi)}(2){Pd(allyl)}(2)](PF(6))(2) (tbbpy = 4,4'-di-tert-butyl-2,2'-bipyridine and tmbi = 5,6,5',6'-tetramethyl-2,2'-bibenzimidazolate) is presented. The charge transfer is initiated by the photoexcitation into the lowest metal-to-ligand charge-transfer (MLCT) band of one of the peripheral ruthenium(II) chromophores and terminates on the central structurally complex Pd(2) (II)(allyl)(2) subunit. Thus, the system under investigation can be thought of as a functional model for the photosynthesis reaction center in plants. The kinetic steps involved in the overall process are inferred from femtosecond time-resolved transient-grating kinetics recorded at spectral positions within the regions of ground-state bleach and transient absorption. The kinetics features a complex non-exponential time behavior and can be fitted to a bi-exponential rise (tau(1)> or =200 fs, tau(2) approximately 1.5 ps) and a mono- or bi-exponential decay, depending on the experimental situation. The data leads to the formulation of a model for the intramolecular excitation-hopping ascribing intersystem crossing and subsequent cooling as the two fastest observed processes. Following these initial steps, charge transfer from the ruthenium to the central complex Pd(2)(allyl)(2) moiety is observed with a characteristic time constant of 50 ps. A 220-ps component that is observed in the ground-state recovery only is attributed to excitation equilibration between the two identical Pd(allyl) chromophores.
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Affiliation(s)
- Benjamin Dietzek
- Institut für Physikalische Chemie, Bayerische Julius-Maximilians Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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Observation of all-trans-β-carotene wavepacket motion on the electronic ground and excited dark state using degenerate four-wave mixing (DFWM) and pump–DFWM. Chem Phys Lett 2005. [DOI: 10.1016/j.cplett.2004.11.135] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Polívka T, Pullerits T, Frank HA, Cogdell RJ, Sundström V. Ultrafast Formation of a Carotenoid Radical in LH2 Antenna Complexes of Purple Bacteria. J Phys Chem B 2004. [DOI: 10.1021/jp0483019] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Tomáš Polívka
- Department of Chemical Physics, Lund University, Box 124, S-22100 Lund, Sweden, Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Division of Biochemistry and Molecular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, U.K
| | - Tõnu Pullerits
- Department of Chemical Physics, Lund University, Box 124, S-22100 Lund, Sweden, Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Division of Biochemistry and Molecular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, U.K
| | - Harry A. Frank
- Department of Chemical Physics, Lund University, Box 124, S-22100 Lund, Sweden, Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Division of Biochemistry and Molecular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, U.K
| | - Richard J. Cogdell
- Department of Chemical Physics, Lund University, Box 124, S-22100 Lund, Sweden, Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Division of Biochemistry and Molecular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, U.K
| | - Villy Sundström
- Department of Chemical Physics, Lund University, Box 124, S-22100 Lund, Sweden, Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, and Division of Biochemistry and Molecular Biology, Institute of Biomedical and Life Sciences, University of Glasgow, Glasgow G12 8QQ, U.K
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Polívka T, Sundström V. Ultrafast dynamics of carotenoid excited States-from solution to natural and artificial systems. Chem Rev 2004; 104:2021-71. [PMID: 15080720 DOI: 10.1021/cr020674n] [Citation(s) in RCA: 642] [Impact Index Per Article: 32.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tomás Polívka
- Department of Chemical Physics, Lund University, Box 124, SE-221 00 Lund, Sweden.
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