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Herbert JM, Paul SK. Interaction Energy Analysis of Monovalent Inorganic Anions in Bulk Water Versus Air/Water Interface. Molecules 2021; 26:6719. [PMID: 34771133 PMCID: PMC8588468 DOI: 10.3390/molecules26216719] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Revised: 10/29/2021] [Accepted: 11/03/2021] [Indexed: 11/16/2022] Open
Abstract
Soft anions exhibit surface activity at the air/water interface that can be probed using surface-sensitive vibrational spectroscopy, but the structural implications of this surface activity remain a matter of debate. Here, we examine the nature of anion-water interactions at the air/water interface using a combination of molecular dynamics simulations and quantum-mechanical energy decomposition analysis based on symmetry-adapted perturbation theory. Results are presented for a set of monovalent anions, including Cl-, Br-, I-, CN-, OCN-, SCN-, NO2-, NO3-, and ClOn- (n=1,2,3,4), several of which are archetypal examples of surface-active species. In all cases, we find that average anion-water interaction energies are systematically larger in bulk water although the difference (with respect to the same quantity computed in the interfacial environment) is well within the magnitude of the instantaneous fluctuations. Specifically for the surface-active species Br-(aq), I-(aq), ClO4-(aq), and SCN-(aq), and also for ClO-(aq), the charge-transfer (CT) energy is found to be larger at the interface than it is in bulk water, by an amount that is greater than the standard deviation of the fluctuations. The Cl-(aq) ion has a slightly larger CT energy at the interface, but NO3-(aq) does not; these two species are borderline cases where consensus is lacking regarding their surface activity. However, CT stabilization amounts to <20% of the total induction energy for each of the ions considered here, and CT-free polarization energies are systematically larger in bulk water in all cases. As such, the role of these effects in the surface activity of soft anions remains unclear. This analysis complements our recent work suggesting that the short-range solvation structure around these ions is scarcely different at the air/water interface from what it is in bulk water. Together, these observations suggest that changes in first-shell hydration structure around soft anions cannot explain observed surface activities.
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Affiliation(s)
- John M. Herbert
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, OH 43210, USA;
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2
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Abstract
Molecular dynamics (MD) simulations have been widely applied to computer-aided drug design (CADD). While MD has been used in a variety of applications such as free energy perturbation and long-time simulations, the accuracy of the results from those methods depends strongly on the force field used. Force fields for small molecules are crucial, as they not only serve as building blocks for developing force fields for larger biomolecules but also act as model compounds that will be transferred to ligands used in CADD. Currently, a wide range of small molecule force fields based on additive or nonpolarizable models have been developed. While these nonpolarizable force fields can produce reasonable estimations of physical properties and have shown success in a variety of systems, there is still room for improvements due to inherent limitations in these models including the lack of an electronic polarization response. For this reason, incorporating polarization effects into the energy function underlying a force field is believed to be an important step forward, giving rise to the development of polarizable force fields. Recent simulations of biological systems have indicated that polarizable force fields are able to provide a better physical representation of intermolecular interactions and, in many cases, better agreement with experimental properties than nonpolarizable, additive force fields. Therefore, this chapter focuses on the development of small molecule force fields with emphasis on polarizable models. It begins with a brief introduction on the importance of small molecule force fields and their evolution from additive to polarizable force fields. Emphasis is placed on the additive CHARMM General Force Field and the polarizable force field based on the classical Drude oscillator. The theory for the Drude polarizable force field and results for small molecules are presented showing their improvements over the additive model. The potential importance of polarization for their application in a wide range of biological systems including CADD is then discussed.
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Affiliation(s)
- Fang-Yu Lin
- Department of Pharmaceutical Sciences, Computer-Aided Drug Design Center, School of Pharmacy, University of Maryland, Baltimore, MD, USA
| | - Alexander D MacKerell
- Department of Pharmaceutical Sciences, Computer-Aided Drug Design Center, School of Pharmacy, University of Maryland, Baltimore, MD, USA.
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3
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Cox SJ, Geissler PL. Interfacial ion solvation: Obtaining the thermodynamic limit from molecular simulations. J Chem Phys 2018; 148:222823. [DOI: 10.1063/1.5020563] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Affiliation(s)
- Stephen J. Cox
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Phillip L. Geissler
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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4
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Abstract
Metal ions play significant roles in numerous fields including chemistry, geochemistry, biochemistry, and materials science. With computational tools increasingly becoming important in chemical research, methods have emerged to effectively face the challenge of modeling metal ions in the gas, aqueous, and solid phases. Herein, we review both quantum and classical modeling strategies for metal ion-containing systems that have been developed over the past few decades. This Review focuses on classical metal ion modeling based on unpolarized models (including the nonbonded, bonded, cationic dummy atom, and combined models), polarizable models (e.g., the fluctuating charge, Drude oscillator, and the induced dipole models), the angular overlap model, and valence bond-based models. Quantum mechanical studies of metal ion-containing systems at the semiempirical, ab initio, and density functional levels of theory are reviewed as well with a particular focus on how these methods inform classical modeling efforts. Finally, conclusions and future prospects and directions are offered that will further enhance the classical modeling of metal ion-containing systems.
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Affiliation(s)
| | - Kenneth M. Merz
- Department of Chemistry, Department of Biochemistry and Molecular Biology, and Institute of Cyber-Enabled Research, Michigan State University, East Lansing, Michigan 48824, United States
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5
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Williams CD, Dix J, Troisi A, Carbone P. Effective Polarization in Pairwise Potentials at the Graphene-Electrolyte Interface. J Phys Chem Lett 2017; 8:703-708. [PMID: 28121448 DOI: 10.1021/acs.jpclett.6b02783] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
Abstract
At the graphene-electrolyte interface, the polarizability of both the surface and the solution plays a major role in defining the interfacial structure and dynamics of the ions. Current molecular models predict different ion adsorption behavior at the interface depending on whether surface or solution polarization is included in the model. Here, we propose a simple method to parametrize the ion-carbon interaction from density functional theory, implicitly modeling the solution using the conductor-like polarizable continuum model. The new model simultaneously takes into account the polarizability of both the graphene sheet and the solution without the need to use time-consuming polarizable potentials and can predict the ion adsorption trend so far only achievable using first-principles simulations. Simulations performed with 1 M electrolyte solutions of different ions show that cations are strongly adsorbed onto the graphene surface with a trend (Li+ < Na+ < K+) opposite to that predicted by the gas-phase calculations and different from that obtained from the single-ion simulations.
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Affiliation(s)
- Christopher D Williams
- School of Chemical Engineering and Analytical Science, University of Manchester , Manchester M13 9PL, United Kingdom
| | - James Dix
- School of Chemical Engineering and Analytical Science, University of Manchester , Manchester M13 9PL, United Kingdom
| | - Alessandro Troisi
- Department of Chemistry and Centre for Scientific Computing, University of Warwick , Coventry CV4 7AL, United Kingdom
| | - Paola Carbone
- School of Chemical Engineering and Analytical Science, University of Manchester , Manchester M13 9PL, United Kingdom
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Litman YE, Videla PE, Rodriguez J, Laria D. Positional Isotope Exchange in HX·(H2O)n (X = F, I) Clusters at Low Temperatures. J Phys Chem A 2016; 120:7213-24. [DOI: 10.1021/acs.jpca.6b06681] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Yair E. Litman
- Departamento
de Química Inorgánica, Analítica y Química-Física
and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Pablo E. Videla
- Departamento
de Química Inorgánica, Analítica y Química-Física
and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
| | - Javier Rodriguez
- Departamento
de Física de la Materia Condensada, Comisión Nacional de Energía Atómica, Avenida Libertador 8250, 1429 Buenos Aires, Argentina
- ECyT, UNSAM, Martín
de Irigoyen 3100, 1650 San Martín, Pcia. de Buenos Aires, Argentina
| | - Daniel Laria
- Departamento
de Química Inorgánica, Analítica y Química-Física
and INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires Ciudad Universitaria, Pabellón II, 1428 Buenos Aires, Argentina
- Departamento
de Física de la Materia Condensada, Comisión Nacional de Energía Atómica, Avenida Libertador 8250, 1429 Buenos Aires, Argentina
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7
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Vorobyov I, Anisimov VM, Greene S, Venable RM, Moser A, Pastor RW, MacKerell AD. Additive and Classical Drude Polarizable Force Fields for Linear and Cyclic Ethers. J Chem Theory Comput 2015; 3:1120-33. [PMID: 26627431 DOI: 10.1021/ct600350s] [Citation(s) in RCA: 216] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
Empirical force field parameters consistent with the CHARMM additive and classical Drude based polarizable force fields are presented for linear and cyclic ethers. Initiation of the optimization process involved validation of the aliphatic parameters based on linear alkanes and cyclic alkanes. Results showed the transfer to cyclohexane to yield satisfactory agreement with target data; however, in the case of cyclopentane direct transfer of the Lennard-Jones parameters was not sufficient due to ring strain, requiring additional optimization of these parameters for this molecule. Parameters for the ethers were then developed starting with the available aliphatic parameters, with the nonbond parameters for the oxygens optimized to reproduce both gas- and condensed-phase properties. Nonbond parameters for the polarizable model include the use of an anisotropic electrostatic model on the oxygens. Parameter optimization emphasized the development of transferable parameters between the ethers of a given class. The ether models are shown to be in satisfactory agreement with both pure solvent and aqueous solvation properties, and the resulting parameters are transferable to test molecules. The presented force field will allow for simulation studies of ethers in condensed phase and provides a basis for ongoing developments in both additive and polarizable force fields for biological molecules.
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Affiliation(s)
- Igor Vorobyov
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Victor M Anisimov
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Shannon Greene
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Richard M Venable
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Adam Moser
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Richard W Pastor
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
| | - Alexander D MacKerell
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, Maryland 21201, and Laboratory of Computational Biology, National Heart, Lung, and Blood Institute, National Institutes of Health, Bethesda, Maryland 20892
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8
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Zeng X, Zhang Y, Xia Z, Wang L, Wang C, Huang Y, Shen R, Wen W. Surface evolution of manganese chloride aqueous droplets resulting in self-suppressed evaporation. Sci Rep 2015; 5:13322. [PMID: 26292669 PMCID: PMC4544006 DOI: 10.1038/srep13322] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2015] [Accepted: 07/21/2015] [Indexed: 11/25/2022] Open
Abstract
The exchange kinetics of liquid water, which are of fundamental interest and have potential applications, remain unclear. A fantastic and extraordinary phenomenon was observed during the evaporation of a water droplet doped with manganese chloride. As observed from the evolution of this type of droplet, a thin film was formed on the surface with an exothermic phase transition, resulting in self-suppressed evaporation. The MnCl2-doped water droplets were maintained in a relative humidity (RH) of 50% at 40 °C for more than a week and for longer than two months at a temperature of 25 °C. In contrast, a pure water droplet can only be sustained for a few minutes. The self-suppressed evaporation of doped water may be due to the special hydration of the accumulated manganese and chloride ions at the surface, decreasing the surface tension.
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Affiliation(s)
- Xiping Zeng
- Nano Science and Technology Program / Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
| | - Yifan Zhang
- Institute of Chemistry, the Chinese Academy of Sciences, Zhongguancun North 1st St, Haidian, Beijing, China
| | - Zengzilu Xia
- Nano Science and Technology Program / Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
| | - Li Wang
- Nano Science and Technology Program / Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
| | - Cong Wang
- Nano Science and Technology Program / Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
| | - Yingzhou Huang
- Chongqing University, No. 174 Shazhengjie, Shapingba, Chongqing, 400044, China
| | - Rong Shen
- Institute of Physics, Chinese Academy of Sciences, Haidian, Beijing, China
| | - Weijia Wen
- Nano Science and Technology Program / Department of Physics, Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong
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9
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Shi Y, Ren P, Schnieders M, Piquemal JP. Polarizable Force Fields for Biomolecular Modeling. REVIEWS IN COMPUTATIONAL CHEMISTRY 2015. [DOI: 10.1002/9781118889886.ch2] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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10
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Richards-Henderson NK, Anderson C, Anastasio C, Finlayson-Pitts BJ. The effect of cations on NO2 production from the photolysis of aqueous thin water films of nitrate salts. Phys Chem Chem Phys 2015; 17:32211-8. [DOI: 10.1039/c5cp05325k] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cations are shown to enhance nitrate photochemistry by changing the concentrations of nitrate ions in the interface region.
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Affiliation(s)
| | | | - Cort Anastasio
- Department of Land
- Air and Water Resources
- University of California – Davis
- Davis
- USA
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11
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Piatkowski L, Zhang Z, Backus EHG, Bakker HJ, Bonn M. Extreme surface propensity of halide ions in water. Nat Commun 2014; 5:4083. [DOI: 10.1038/ncomms5083] [Citation(s) in RCA: 82] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2013] [Accepted: 05/09/2014] [Indexed: 11/09/2022] Open
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12
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Holmberg N, Sammalkorpi M, Laasonen K. Ion Transport through a Water–Organic Solvent Liquid–Liquid Interface: A Simulation Study. J Phys Chem B 2014; 118:5957-70. [DOI: 10.1021/jp412162c] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Nico Holmberg
- Department
of Chemistry, Aalto University, Aalto, Finland
| | | | - Kari Laasonen
- Department
of Chemistry, Aalto University, Aalto, Finland
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13
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Ishiyama T, Imamura T, Morita A. Theoretical Studies of Structures and Vibrational Sum Frequency Generation Spectra at Aqueous Interfaces. Chem Rev 2014; 114:8447-70. [DOI: 10.1021/cr4004133] [Citation(s) in RCA: 110] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
- Tatsuya Ishiyama
- Department
of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Takako Imamura
- Department
of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
| | - Akihiro Morita
- Department
of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan
- Elements
Strategy Initiative for Catalysts and Batteries, Kyoto University, Kyoto 615-8520, Japan
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14
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Riahi S, Rowley CN. Solvation of Hydrogen Sulfide in Liquid Water and at the Water–Vapor Interface Using a Polarizable Force Field. J Phys Chem B 2014; 118:1373-80. [DOI: 10.1021/jp4096198] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Saleh Riahi
- Department of Chemistry, Memorial University of Newfoundland, St. John’s, Newfoundland A1B 3X7, Canada
| | - Christopher N. Rowley
- Department of Chemistry, Memorial University of Newfoundland, St. John’s, Newfoundland A1B 3X7, Canada
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16
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Ou S, Hu Y, Patel S, Wan H. Spherical monovalent ions at aqueous liquid-vapor interfaces: interfacial stability and induced interface fluctuations. J Phys Chem B 2013; 117:11732-42. [PMID: 24032752 DOI: 10.1021/jp406001b] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Ion-specific interfacial behaviors of monovalent halides impact processes such as protein denaturation, interfacial stability, and surface tension modulation, and as such, their molecular and thermodynamic underpinnings garner much attention. We use molecular dynamics simulations of monovalent anions in water to explore effects on distant interfaces. We observe long-ranged ion-induced perturbations of the aqueous environment, as suggested by experiment and theory. Surface stable ions, characterized as such by minima in potentials of mean force computed using umbrella sampling MD simulations, induce larger interfacial fluctuations compared to nonsurface active species, conferring more entropy approaching the interface. Smaller anions and cations show no interfacial potential of mean force minima. The difference is traced to hydration shell properties of the anions, and the coupling of these shells with distant solvent. The effects correlate with the positions of the anions in the Hofmeister series (acknowledging variations in force field ability to recapitulate essential underlying physics), suggesting how differences in induced, nonlocal perturbations of interfaces may be related to different specific-ion effects in dilute biophysical and nanomaterial systems.
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Affiliation(s)
- Shuching Ou
- Department of Chemistry and Biochemistry, University of Delaware , Newark, Delaware 19716, United States
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17
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Yakhno TA, Sanin AG, Sanina OA, Yakhno VG. Method for studying phase transitions in drying drops and its application in assessing the physicochemical properties of water and aqueous solutions. Biophysics (Nagoya-shi) 2013. [DOI: 10.1134/s0006350912060188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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18
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Yu W, Lopes PEM, Roux B, MacKerell AD. Six-site polarizable model of water based on the classical Drude oscillator. J Chem Phys 2013; 138:034508. [PMID: 23343286 PMCID: PMC3562330 DOI: 10.1063/1.4774577] [Citation(s) in RCA: 92] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2012] [Accepted: 12/21/2012] [Indexed: 01/23/2023] Open
Abstract
A polarizable water model, SWM6, was developed and optimized for liquid phase simulations under ambient conditions. Building upon the previously developed SWM4-NDP model, additional sites representing oxygen lone-pairs were introduced. The geometry of the sites is assumed to be rigid. Considering the large number of adjustable parameters, simulated annealing together with polynomial fitting was used to facilitate model optimization. The new water model was shown to yield the correct self-diffusion coefficient after taking the system size effect into account, and the dimer geometry is better reproduced than in the SWM4 models. Moreover, the experimental oxygen-oxygen radial distribution is better reproduced, indicating that the new model more accurately describes the local hydrogen bonding structure of bulk phase water. This was further validated by its ability to reproduce the experimental nuclear magnetic shielding and related chemical shift of the water hydrogen in the bulk phase, a property sensitive to the local hydrogen bonding structure. In addition, comparison of the liquid properties of the SWM6 model is made with those of a number of widely used additive and polarizable models. Overall, improved balance between the description of monomer, dimer, clustered, and bulk phase water is obtained with the new model compared to its SWM4-NDP polarizable predecessor, though application of the model requires an approximately twofold increase on computational resources.
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Affiliation(s)
- Wenbo Yu
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, 20 Penn Street, Baltimore, Maryland 21201, USA
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Verreault D, Hua W, Allen HC. From Conventional to Phase-Sensitive Vibrational Sum Frequency Generation Spectroscopy: Probing Water Organization at Aqueous Interfaces. J Phys Chem Lett 2012; 3:3012-3028. [PMID: 26292243 DOI: 10.1021/jz301179g] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Elucidation of water organization at aqueous interfaces has remained a challenging problem. Conventional vibrational sum frequency generation (VSFG) spectroscopy and its most recent extension, phase-sensitive VSFG (PS-VSFG), have emerged as powerful experimental methods for unraveling structural information at various aqueous interfaces. In this Perspective, we briefly describe the two possible VSFG detection modes, and we point out features that make these methods highly suited to address questions about water organization at air/aqueous interfaces. Several important aqueous interfacial systems are discussed to illustrate the versatility of these methods. Remaining challenges and exciting prospective directions are also presented.
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Affiliation(s)
- Dominique Verreault
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Wei Hua
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Heather C Allen
- Department of Chemistry and Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
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20
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Jiang N, Ma J. Multi-layer coarse-graining polarization model for treating electrostatic interactions of solvatedα-conotoxin peptides. J Chem Phys 2012; 136:134105. [DOI: 10.1063/1.3700157] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
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21
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Ioannou F, Archontis G, Leontidis E. Specific interactions of sodium salts with alanine dipeptide and tetrapeptide in water: insights from molecular dynamics. J Phys Chem B 2011; 115:13389-400. [PMID: 21978277 DOI: 10.1021/jp207068m] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
We examine computationally the dipeptide and tetrapeptide of alanine in pure water and solutions of sodium chloride (NaCl) and iodide (NaI), with salt concentrations up to 3 M. Enhanced sampling of the configuration space is achieved by the replica exchange method. In agreement with other works, we observe preferential sodium interactions with the peptide carbonyl groups, which are enhanced in the NaI solutions due to the increased affinity of the less hydrophilic iodide anion for the peptide methyl side-chains and terminal blocking groups. These interactions have been associated with a decrease in the helicities of more complex peptides. In our simulations, both salts have a small effect on the dipeptide, but consistently stabilize the intramolecular hydrogen-bonding interactions and "α-helical" conformations of the tetrapeptide. This behavior, and an analysis of the intermolecular interaction energies show that ion-peptide interactions, or changes in the peptide hydration due to salts, are not sufficient determining factors of the peptide conformational preferences. Additional simulations suggest that the observed stabilizing effect is not due to the employed force-field, and that it is maintained in short peptides but is reversed in longer peptides. Thus, the peptide conformational preferences are determined by an interplay of energetic and entropic factors, arising from the peptide sequence and length and the composition of the solution.
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Borah JM, Mahiuddin S, Sarma N, Parsons DF, Ninham BW. Specific ion effects on adsorption at the solid/electrolyte interface: a probe into the concentration limit. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2011; 27:8710-8717. [PMID: 21671605 DOI: 10.1021/la2006277] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Adsorption of organic acid at the mineral oxide-electrolyte interface has been explored. The adsorption of 2,4-dihydroxybenzoic acid onto α-alumina illustrates that specific ion effects show up at very low salt concentration (<0.05 mM). These surprising Hofmeister effects occur at salt concentrations an order of magnitude lower than in a previous study ( J. Colloid Interface Sci. 2010, 344, 482 ). Salts enhance adsorption and specifically at ≤0.05 mM. With increasing concentration of ion, the adsorption density decreases. The results are accounted for by incorporating the ion size and dispersion forces in the theoretical modeling based on ab initio calculations of polarizabilities. The order appears to be governed by ion size, determining the maximum concentration that ions can attain near the surface due to close packing.
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Affiliation(s)
- Jayanta M Borah
- Materials Science Division, North-East Institute of Science & Technology, CSIR, Jorhat, Assam, India
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23
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Bauer BA, Zhong Y, Meninger DJ, Davis JE, Patel S. Phase-transfer energetics of small-molecule alcohols across the water-hexane interface: molecular dynamics simulations using charge equilibration models. J Mol Graph Model 2011; 29:876-87. [PMID: 21414823 PMCID: PMC3070209 DOI: 10.1016/j.jmgm.2010.09.005] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2010] [Revised: 09/17/2010] [Accepted: 09/23/2010] [Indexed: 11/15/2022]
Abstract
We study the water-hexane interface using molecular dynamics (MD) and polarizable charge equilibration (CHEQ) force fields. Bulk densities for TIP4P-FQ water and hexane, 1.0086±0.0002 and 0.6378±0.0001 g/cm(3), demonstrate excellent agreement with experiment. Interfacial width and interfacial tension are consistent with previously reported values. The in-plane component of the dielectric permittivity (ɛ(||)) for water is shown to decrease from 81.7±0.04 to unity, transitioning longitudinally from bulk water to bulk hexane. ɛ(||) for hexane reaches a maximum in the interface, but this term represents only a small contribution to the total dielectric constant (as expected for a non-polar species). Structurally, net orientations of the molecules arise in the interfacial region such that hexane lies slightly parallel to the interface and water reorients to maximize hydrogen bonding. Interfacial potentials due to contributions of the water and hexane are calculated to be -567.9±0.13 and 198.7±0.01 mV, respectively, giving rise to a total potential in agreement with the range of values reported from previous simulations of similar systems. Potentials of mean force (PMF) calculated for methanol, ethanol, and 1-propanol for the transfer from water to hexane indicate an interfacial free energy minimum, corresponding to the amphiphilic nature of the molecules. The magnitudes of transfer free energies were further characterized from the solvation free energies of alcohols in water and hexane using thermodynamic integration. This analysis shows that solvation free energies for alcohols in hexane are 0.2-0.3 kcal/mol too unfavorable, whereas solvation of alcohols in water is approximately 1 kcal/mol too favorable. For the pure hexane-water interfacial simulations, we observe a monotonic decrease of the water dipole moment to near-vacuum values. This suggests that the electrostatic component of the desolvation free energy is not as severe for polarizable models than for fixed-charge force fields. The implications of such behavior pertain to the modeling of polar and charged solutes in lipidic environments.
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Affiliation(s)
- Brad A. Bauer
- Department of Chemistry and Biochemistry 238 Brown Laboratory University of Delaware Newark, DE 19716
| | - Yang Zhong
- Department of Chemistry and Biochemistry 238 Brown Laboratory University of Delaware Newark, DE 19716
| | - David J. Meninger
- Department of Chemistry and Biochemistry 238 Brown Laboratory University of Delaware Newark, DE 19716
- Department of Physics and Astronomy University of Delaware Newark, DE 19716
| | - Joseph E. Davis
- Department of Chemistry and Biochemistry 238 Brown Laboratory University of Delaware Newark, DE 19716
| | - Sandeep Patel
- Department of Chemistry and Biochemistry 238 Brown Laboratory University of Delaware Newark, DE 19716
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24
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Richards NK, Wingen LM, Callahan KM, Nishino N, Kleinman MT, Tobias DJ, Finlayson-Pitts BJ. Nitrate Ion Photolysis in Thin Water Films in the Presence of Bromide Ions. J Phys Chem A 2011; 115:5810-21. [DOI: 10.1021/jp109560j] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nicole K. Richards
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Lisa M. Wingen
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Karen M. Callahan
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Noriko Nishino
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
| | - Michael T. Kleinman
- Department of Medicine, University of California, Irvine, California 92697-1825, United States
| | - Douglas J. Tobias
- Department of Chemistry, University of California, Irvine, California 92697-2025, United States
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25
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Skrzela R, Para G, Warszyński P, Wilk KA. Experimental and theoretical approach to nonequivalent adsorption of novel dicephalic ammonium surfactants at the air/solution interface. J Phys Chem B 2010; 114:10471-80. [PMID: 20666437 DOI: 10.1021/jp1049809] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The interfacial behavior of novel dicephalic cationic surfactants, N,N-bis[3,3'-(trimethylammonio)propyl]alkylamide dibromides and N,N-bis[3,3'-(trimethylammonio)propyl]alkylamide dimethylsulfates, was analyzed both experimentally and theoretically in comparison to their linear standards, 3-[(trimethylammonio)propyl]dodecanamide bromide and 3-[(trimethylammonio)propyl]dodecanamide methylsulfate. Adsorption of the studied double head-single tail surfactants depends strongly upon their structure, making them less surface active in comparison to the single head-single tail structures having the same alkyl chain length. Surface tension isotherms of aqueous solutions of the studied dicephalic derivatives were measured using the pendant drop shape analysis method and interpreted with the so-called surface quasi-two-dimensional electrolyte (STDE) model of ionic surfactant adsorption. The model is based on the assumption that the surfactant ions and counterions (bromide and methylsulfate ions in the studied case) undergo nonequivalent adsorption within the Stern layer, and it allows for accounting for the formation of surfactant ion-counterion associates in the case of multivalent surfactant headgroup ions. As a result, good agreement between theory and experiment was obtained. Additionally, the presence of surfactant-counterion complexes was successfully confirmed by both measurements of the concentration of free bromide ions in solution and molecular modeling simulations. The results of the present study may prove useful in the potential application of the investigated dicephalic cationic surfactants.
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Affiliation(s)
- Renata Skrzela
- Department of Chemistry, Wrocław University of Technology, Poland
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26
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Viswanath P, Aroti A, Motschmann H, Leontidis E. Vibrational sum frequency generation spectroscopic investigation of the interaction of thiocyanate ions with zwitterionic phospholipid monolayers at the air-water interface. J Phys Chem B 2010; 113:14816-23. [PMID: 19824633 DOI: 10.1021/jp906455k] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Thiocyanate (SCN(-)) is a highly chaotropic anion of considerable biological significance, which interacts quite strongly with lipid interfaces. In most cases it is not exactly known if this interaction involves direct binding to lipid groups, or some type of indirect association or partitioning. Since thiocyanate is a linear ion, with a considerable dipole moment and nonspherical polarizability tensor, one should also consider its capability to adopt different or preferential orientations at lipid interfaces. In the present work, the interaction of thiocyanate anions with zwitterionic phospholipid monolayers in the liquid expanded (LE) phase is examined using surface pressure-area per molecule (pi-A(L)) isotherms and vibrational sum frequency generation (VSFG) spectroscopy. Both dipalmitoyl phosphatidylcholine (DPPC) and dimyristoyl phosphatidylethanolamine (DMPE) lipids, which form stable monolayers, have been used in this investigation, since their headgroups may be expected to interact with the electrolyte solution in different ways. The pi-A(L) isotherms of both lipids indicate a strong expansion of the monolayers when in contact with SCN(-) solutions. From the C-H stretch region of the VSFG spectra it can be deduced that the presence of the anion perturbs the conformation of the lipid chains significantly. The interfacial water structure is also perturbed in a complex way. Two distinct thiocyanate populations are detected in the CN stretch spectral region, proving that SCN(-) associates with zwitterionic phospholipids. Although this is a preliminary investigation of this complex system and more work is necessary to clarify certain points made in the discussion, a potential identification of the two SCN(-) populations and a molecular-level explanation for the observed effects of the SCN(-) on the VSFG spectra of the lipids is provided.
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Affiliation(s)
- P Viswanath
- Max Planck Institute of Colloids and Interfaces, Am Muhlenberg 1, D14424 Golm/Potsdam, Germany
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27
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Bauer BA, Patel S. Molecular dynamics simulations of nonpolarizable inorganic salt solution interfaces: NaCl, NaBr, and NaI in transferable intermolecular potential 4-point with charge dependent polarizability (TIP4P-QDP) water. J Chem Phys 2010; 132:024713. [PMID: 20095700 PMCID: PMC2821151 DOI: 10.1063/1.3269673] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2009] [Accepted: 11/09/2009] [Indexed: 01/01/2023] Open
Abstract
We present molecular dynamics simulations of the liquid-vapor interface of 1M salt solutions of nonpolarizable NaCl, NaBr, and NaI in polarizable transferable intermolecular potential 4-point with charge dependent polarizability water [B. A. Bauer et al., J. Chem. Theory Comput. 5, 359 (2009)]; this water model accommodates increased solvent polarizability (relative to the condensed phase) in the interfacial and vapor regions. We employ fixed-charge ion models developed in conjunction with the TIP4P-QDP water model to reproduce ab initio ion-water binding energies and ion-water distances for isolated ion-water pairs. The transferability of these ion models to the condensed phase was validated with hydration free energies computed using thermodynamic integration (TI) and appropriate energy corrections. Density profiles of Cl(-), Br(-), and I(-) exhibit charge layering in the interfacial region; anions and cation interfacial probabilities show marked localization, with the anions penetrating further toward the vapor than the cations. Importantly, in none of the cases studied do anions favor the outermost regions of the interface; there is always an aqueous region between the anions and vapor phase. Observed interfacial charge layering is independent of the strength of anion-cation interactions as manifest in anion-cation contact ion pair peaks and solvent separated ion pair peaks; by artificially modulating the strength of anion-cation interactions (independent of their interactions with solvent), we find little dependence on charge layering particularly for the larger iodide anion. The present results reiterate the widely held view of the importance of solvent and ion polarizability in mediating specific anion surface segregation effects. Moreover, due to the higher parametrized polarizability of the TIP4P-QDP condensed phase {1.31 A(3) for TIP4P-QDP versus 1.1 A(3) (TIP4P-FQ) and 0.87 A(3) (POL3) [Ponder and Case, Adv. Protein Chem. 66, 27 (2003)]} based on ab initio calculations of the condensed-phase polarizability reduction in liquid water, the present simulations highlight the role of water polarizability in inducing water molecular dipole moments parallel to the interface normal (and within the interfacial region) so as to favorably oppose the macrodipole generated by the separation of anion and cation charge. Since the TIP4P-QDP water polarizability approaches that of the experimental vapor phase value for water, the present results suggest a fundamental role of solvent polarizability in accommodating the large spatial dipole generated by the separation of ion charges. The present results draw further attention to the question of what exact value of condensed phase water polarizability to incorporate in classical polarizable water force fields.
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Affiliation(s)
- Brad A Bauer
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
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28
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Lopes PEM, Roux B, MacKerell AD. Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications. Theor Chem Acc 2009; 124:11-28. [PMID: 20577578 PMCID: PMC2888514 DOI: 10.1007/s00214-009-0617-x] [Citation(s) in RCA: 265] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A current emphasis in empirical force fields is on the development of potential functions that explicitly treat electronic polarizability. In the present article, the commonly used methodologies for modelling electronic polarization are presented along with an overview of selected application studies. Models presented include induced point-dipoles, classical Drude oscillators, and fluctuating charge methods. The theoretical background of each method is followed by an introduction to extended Langrangian integrators required for computationally tractable molecular dynamics simulations using polarizable force fields. The remainder of the review focuses on application studies using these methods. Emphasis is placed on water models, for which numerous examples exist, with a more thorough discussion presented on the recently published models associated with the Drude-based CHARMM and the AMOEBA force fields. The utility of polarizable models for the study of ion solvation is then presented followed by an overview of studies of small molecules (e.g. CCl(4), alkanes, etc) and macromolecule (proteins, nucleic acids and lipid bilayers) application studies. The review is written with the goal of providing a general overview of the current status of the field and to facilitate future application and developments.
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Affiliation(s)
- Pedro E. M. Lopes
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, 20 Penn Street, Baltimore, MD 21230, USA
| | - Benoit Roux
- Institute of Molecular Pediatric Sciences, Gordon Center for Integrative Science, University of Chicago 929 E. 57th St. Chicago, IL 60637
| | - Alexander D. MacKerell
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, 20 Penn Street, Baltimore, MD 21230, USA
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29
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Brooks B, Brooks C, MacKerell A, Nilsson L, Petrella R, Roux B, Won Y, Archontis G, Bartels C, Boresch S, Caflisch A, Caves L, Cui Q, Dinner A, Feig M, Fischer S, Gao J, Hodoscek M, Im W, Kuczera K, Lazaridis T, Ma J, Ovchinnikov V, Paci E, Pastor R, Post C, Pu J, Schaefer M, Tidor B, Venable RM, Woodcock HL, Wu X, Yang W, York D, Karplus M. CHARMM: the biomolecular simulation program. J Comput Chem 2009; 30:1545-614. [PMID: 19444816 PMCID: PMC2810661 DOI: 10.1002/jcc.21287] [Citation(s) in RCA: 5951] [Impact Index Per Article: 396.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and widely used molecular simulation program. It has been developed over the last three decades with a primary focus on molecules of biological interest, including proteins, peptides, lipids, nucleic acids, carbohydrates, and small molecule ligands, as they occur in solution, crystals, and membrane environments. For the study of such systems, the program provides a large suite of computational tools that include numerous conformational and path sampling methods, free energy estimators, molecular minimization, dynamics, and analysis techniques, and model-building capabilities. The CHARMM program is applicable to problems involving a much broader class of many-particle systems. Calculations with CHARMM can be performed using a number of different energy functions and models, from mixed quantum mechanical-molecular mechanical force fields, to all-atom classical potential energy functions with explicit solvent and various boundary conditions, to implicit solvent and membrane models. The program has been ported to numerous platforms in both serial and parallel architectures. This article provides an overview of the program as it exists today with an emphasis on developments since the publication of the original CHARMM article in 1983.
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Affiliation(s)
- B.R. Brooks
- Laboratory of Computational Biology, National Heart, Lung, and
Blood Institute, National Institutes of Health, Bethesda, MD 20892
| | - C.L. Brooks
- Departments of Chemistry & Biophysics, University of
Michigan, Ann Arbor, MI 48109
| | - A.D. MacKerell
- Department of Pharmaceutical Sciences, School of Pharmacy,
University of Maryland, Baltimore, MD, 21201
| | - L. Nilsson
- Karolinska Institutet, Department of Biosciences and Nutrition,
SE-141 57, Huddinge, Sweden
| | - R.J. Petrella
- Department of Chemistry and Chemical Biology, Harvard University,
Cambridge, MA 02138
- Department of Medicine, Harvard Medical School, Boston, MA
02115
| | - B. Roux
- Department of Biochemistry and Molecular Biology, University of
Chicago, Gordon Center for Integrative Science, Chicago, IL 60637
| | - Y. Won
- Department of Chemistry, Hanyang University, Seoul
133–792 Korea
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - M. Karplus
- Department of Chemistry and Chemical Biology, Harvard University,
Cambridge, MA 02138
- Laboratoire de Chimie Biophysique, ISIS, Université de
Strasbourg, 67000 Strasbourg France
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30
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Jungwirth P. Spiers Memorial Lecture. Ions at aqueous interfaces. Faraday Discuss 2009; 141:9-30; discussion 81-98. [PMID: 19227348 DOI: 10.1039/b816684f] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Studies of aqueous interfaces and of the behavior of ions therein have been profiting from a recent remarkable progress in surface selective spectroscopies, as well as from developments in molecular simulations. Here, we summarize and place in context our investigations of ions at aqueous interfaces employing molecular dynamics simulations and electronic structure methods, performed in close contact with experiment. For the simplest of these interfaces, i.e. the open water surface, we demonstrate that the traditional picture of an ion-free surface is not valid for large, soft (polarizable) ions such as the heavier halides. Both simulations and spectroscopic measurements indicate that these ions can be present and even enhanced at surface of water. In addition we show that the ionic product of water exhibits a peculiar surface behavior with hydronium but not hydroxide accumulating at the air/water and alkane/water interfaces. This result is supported by surface-selective spectroscopic experiments and surface tension measurements. However, it contradicts the interpretation of electrophoretic and titration experiments in terms of strong surface adsorption of hydroxide; an issue which is further discussed here. The applicability of the observed behavior of ions at the water surface to investigations of their affinity for the interface between proteins and aqueous solutions is explored. Simulations show that for alkali cations the dominant mechanism of specific interactions with the surface of hydrated proteins is via ion pairing with negatively charged amino acid residues and with the backbone amide groups. As far as halide anions are concerned, the lighter ones tend to pair with positively charged amino acid residues, while heavier halides exhibit affinity to the amide group and to non-polar protein patches, the latter resembling their behavior at the air/water interface. These findings, together with results for more complex molecular ions, allow us to formulate a local model of interactions of ions with proteins with the aim to rationalize at the molecular level ion-specific Hofmeister effects, e.g. the salting out of proteins.
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Affiliation(s)
- Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Complex Molecular Systems and Biomolecules, Prague, Czech Republic.
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31
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Leontidis E, Aroti A. Liquid Expanded Monolayers of Lipids As Model Systems to Understand the Anionic Hofmeister Series: 2. Ion Partitioning Is Mostly a Matter of Size. J Phys Chem B 2009; 113:1460-7. [DOI: 10.1021/jp809444n] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- E. Leontidis
- Department of Chemistry, University of Cyprus, Nicosia 1678, Cyprus
| | - A. Aroti
- Department of Chemistry, University of Cyprus, Nicosia 1678, Cyprus
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32
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Leontidis E, Aroti A, Belloni L. Liquid Expanded Monolayers of Lipids As Model Systems to Understand the Anionic Hofmeister Series: 1. A Tale of Models. J Phys Chem B 2009; 113:1447-59. [DOI: 10.1021/jp809443d] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- E. Leontidis
- Department of Chemistry, University of Cyprus, Nicosia 1678, Cyprus
| | - A. Aroti
- Department of Chemistry, University of Cyprus, Nicosia 1678, Cyprus
| | - L. Belloni
- CEA/SACLAY, LIONS at Service de Chimie Moléculaire, 91191-Gif-sur-Yvette Cedex, France
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33
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Ghosal S, Brown MA, Bluhm H, Krisch MJ, Salmeron M, Jungwirth P, Hemminger JC. Ion Partitioning at the Liquid/Vapor Interface of a Multicomponent Alkali Halide Solution: A Model for Aqueous Sea Salt Aerosols. J Phys Chem A 2008; 112:12378-84. [DOI: 10.1021/jp805490f] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Sutapa Ghosal
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
| | - Matthew A. Brown
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
| | - Hendrik Bluhm
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
| | - Maria J. Krisch
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
| | - Miquel Salmeron
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
| | - Pavel Jungwirth
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
| | - John C. Hemminger
- Physical and Life Sciences Directorate, Lawrence Livermore National Laboratory, L-437, Livermore California 94551, Department of Chemistry and AirUCI, University of California, Irvine, California 92697, Chemical Sciences Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, Materials Science Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, California 94720, and Institute of Organic Chemistry and Biochemistry, Academy of
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34
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Warren GL, Patel S. Electrostatic properties of aqueous salt solution interfaces: a comparison of polarizable and nonpolarizable ion models. J Phys Chem B 2008; 112:11679-93. [PMID: 18712908 PMCID: PMC4214153 DOI: 10.1021/jp8038835] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
The effects of ion force field polarizability on the interfacial electrostatic properties of approximately 1 M aqueous solutions of NaCl, CsCl, and NaI are investigated using molecular dynamics simulations employing both nonpolarizable and Drude-polarizable ion sets. Differences in computed depth-dependent orientational distributions, "permanent" and induced dipole and quadrupole moment profiles, and interfacial potentials are obtained for both ion sets to further elucidate how ion polarizability affects interfacial electrostatic properties among the various salts relative to pure water. We observe that the orientations and induced dipoles of water molecules are more strongly perturbed in the presence of polarizable ions via a stronger ionic double layer effect arising from greater charge separation. Both anions and cations exhibit enhanced induced dipole moments and strong z alignment in the vicinity of the Gibbs dividing surface (GDS) with the magnitude of the anion induced dipoles being nearly an order of magnitude larger than those of the cations and directed into the vapor phase. Depth-dependent profiles for the trace and z z components of the water molecular quadrupole moment tensors reveal 40% larger quadrupole moments in the bulk phase relative to the vapor which mimics a similar observed 40% increase in the average water dipole moment. Across the GDS, the water molecular quadrupole moments increase nonmonotonically (in contrast to the water dipoles) and exhibit a locally reduced contribution just below the surface due to both orientational and polarization effects. Computed interfacial potentials for the nonpolarizable salts yield values 20-60 mV more positive than pure water and increase by an additional 30-100 mV when ion polarizability is included. A rigorous decomposition of the total interfacial potential into ion monopole, water and ion dipole, and water quadrupole components reveals that a very strong, positive ion monopole contribution is offset by negative contributions from all other potential sources. Water quadrupole components modulated by the water density contribute significantly to the observed interfacial potential increments and almost entirely explain observed differences in the interfacial potentials for the two chloride salts. By lumping all remaining nonquadrupole interfacial potential contributions into a single "effective" dipole potential, we observe that the ratio of quadrupole to "effective" dipole contributions range from 2:1 in CsCl to 1:1.5 in NaI, suggesting that both contributions are comparably important in determining the interfacial potential increments. We also find that oscillations in the quadrupole potential in the double layer region are opposite in sign and partially cancel those of the "effective" dipole potential.
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Affiliation(s)
- G. Lee Warren
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
| | - Sandeep Patel
- Department of Chemistry and Biochemistry, University of Delaware, Newark, Delaware 19716, USA
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35
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Jiang N, Ma J. Conformational Simulations of Aqueous Solvated α-Conotoxin GI and Its Single Disulfide Analogues Using a Polarizable Force Field Model. J Phys Chem A 2008; 112:9854-67. [DOI: 10.1021/jp8029693] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Affiliation(s)
- Nan Jiang
- School of Chemistry and Chemical Engineering, Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, Nanjing University, Nanjing, 210093, People’s Republic of China
| | - Jing Ma
- School of Chemistry and Chemical Engineering, Institute of Theoretical and Computational Chemistry, Key Laboratory of Mesoscopic Chemistry of MOE, Nanjing University, Nanjing, 210093, People’s Republic of China
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36
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Affiliation(s)
- Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Complex Molecular Systems and Biomolecules, 16610 Prague 6, Czech Republic;
| | - Bernd Winter
- Max-Born-Institut für Nichtlineare Optik und Kurzzeitspektroskopie, D-12489 Berlin, Germany;
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37
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Aroti A, Leontidis E, Dubois M, Zemb T. Effects of monovalent anions of the hofmeister series on DPPC lipid bilayers Part I: swelling and in-plane equations of state. Biophys J 2007; 93:1580-90. [PMID: 17496051 PMCID: PMC1948043 DOI: 10.1529/biophysj.106.094482] [Citation(s) in RCA: 73] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2006] [Accepted: 04/17/2007] [Indexed: 11/18/2022] Open
Abstract
Aiming to improve understanding of the mechanisms behind specific anion effects in biological systems we have studied the effects of sodium salts of simple monovalent anions belonging to the Hofmeister series on the bilayers of the zwitterionic lipid 1,2-dipalmitoyl-sn-glycero-3-phosphocholine using small-angle x-ray scattering and the osmotic stress technique. NaCl, NaBr, NaNO(3), NaI, and NaSCN were used in this investigation. The electrolytes were found to swell the bilayers and to increase the area per lipid headgroup at each value of the osmotic pressure, suggesting the association of anions with the bilayer-lipid interfaces. The effects follow the Hofmeister series with SCN(-) inducing the most pronounced changes. "Ion competition" experiments with mixed NaI/NaCl solutions at total salinity 0.1 and 0.5 M revealed that the effect of ions on the lipid equation-of-state is roughly linear at low concentrations, but strongly nonlinear at high concentrations. The experimental results are fitted in a companion article to provide "binding" or "partitioning" constants of anions in the lipid bilayers.
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Affiliation(s)
- A Aroti
- Department of Chemistry, University of Cyprus, Nicosia, Cyprus
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Cwiklik L, Andersson G, Dang LX, Jungwirth P. Segregation of Inorganic Ions at Surfaces of Polar Nonaqueous Liquids. Chemphyschem 2007; 8:1457-63. [PMID: 17520587 DOI: 10.1002/cphc.200700039] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
We present a short review of recent computational and experimental studies on surfaces of solutions of inorganic salts in polar nonaqueous solvents. These investigations complement our knowledge of aqueous interfaces and show that liquids such as formamide, liquid ammonia, and ethylene glycol can also surface-segregate large polarizable anions like iodide, albeit less efficiently than water. For liquids whose surfaces are covered with hydrophobic groups (e.g. methanol), the surface-ion effect all but disappears. Based on the present data a general picture of inorganic-ion solvation at the solution-vapor interface of polar liquids is outlined.
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Affiliation(s)
- Lukasz Cwiklik
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, Flemingovo nám. 2, 16610 Prague 6, Czech Republic
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Vácha R, Buch V, Milet A, Devlin JP, Jungwirth P. Autoionization at the surface of neat water: is the top layer pH neutral, basic, or acidic? Phys Chem Chem Phys 2007; 9:4736-47. [PMID: 17712453 DOI: 10.1039/b704491g] [Citation(s) in RCA: 112] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
Autoionization of water which gives rise to its pH is one of the key properties of aqueous systems. Surfaces of water and aqueous electrolyte solutions are traditionally viewed as devoid of inorganic ions; however, recent molecular simulations and spectroscopic experiments show the presence of certain ions including hydronium in the topmost layer. This raises the question of what is the pH (defined using proton concentration in the topmost layer) of the surface of neat water. Microscopic simulations and measurements with atomistic resolution show that the water surface is acidic due to a strong propensity of hydronium (but not of hydroxide) for the surface. In contrast, macroscopic experiments, such as zeta potential and titration measurements, indicate a negatively charged water surface interpreted in terms of preferential adsorption of OH(-). Here we review recent simulations and experiments characterizing autoionization at the surface of liquid water and ice crystals in an attempt to present and discuss in detail, if not fully resolve, this controversy.
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Affiliation(s)
- Robert Vácha
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences Sciences of the Czech Republic and Center for Biomolecules and Complex Molecular Systems, 16610, Prague 6, Czech Republic
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Lamoureux G, Roux B. Absolute hydration free energy scale for alkali and halide ions established from simulations with a polarizable force field. J Phys Chem B 2007; 110:3308-22. [PMID: 16494345 DOI: 10.1021/jp056043p] [Citation(s) in RCA: 308] [Impact Index Per Article: 18.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A polarizable potential function for the hydration of alkali and halide ions is developed on the basis of the recent SWM4-DP water model [Lamoureux, G.; MacKerell, A. D., Jr.; Roux, B. J. Chem. Phys. 2003, 119, 5185]. Induced polarization is incorporated using classical Drude oscillators that are treated as auxiliary dynamical degrees of freedom. The ions are represented as polarizable Lennard-Jones centers, whose parameters are optimized to reproduce the binding energies of gas-phase monohydrates and the hydration free energies in the bulk liquid. Systematic exploration of the parameters shows that the monohydrate binding energies can be consistent with a unique hydration free energy scale if the computed hydration free energies incorporate the contribution from the air/water interfacial electrostatic potential (-540 mV for SWM4-DP). The final model, which can satisfyingly reproduce both gas and bulk-phase properties, corresponds to an absolute scale in which the intrinsic hydration free energy of the proton is -247 kcal/mol.
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Affiliation(s)
- Guillaume Lamoureux
- Département de physique, Université de Montréal, C.P. 6128, succ. centre-ville, Montréal, Québec H3C 3J7, Canada
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41
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Intermolecular correlation effect in sum frequency generation spectroscopy of electrolyte aqueous solution. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.09.024] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Para G, Jarek E, Warszynski P. The Hofmeister series effect in adsorption of cationic surfactants--theoretical description and experimental results. Adv Colloid Interface Sci 2006; 122:39-55. [PMID: 16905112 DOI: 10.1016/j.cis.2006.06.017] [Citation(s) in RCA: 114] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Interfacial properties of cationic surfactants show strong dependence on the type of surfactant counterion or on the type of anion of a salt added to the surfactant solution. In the paper, the models of ionic surfactant adsorption that can take into account ionic specific effects are reviewed. Model of ionic surfactant adsorption based on the assumption that the surfactant ions and counterions undergo nonequivalent adsorption within the Stern layer was selected to describe experimental surface tension isotherms of aqueous solutions of a number of cationic surfactants. The experimental isotherms for: n-alkyl trimethylammonium cationic surfactants, namely: C(16)TABr (CTABr or CTAB), C(16)TACl, C(16)TAHSO(4), C(10)TABr and C(12)TABr as well as decyl- and dodecylpyridinium salts with and without various electrolyte anions as Cl(-), Br(-), F(-), I(-), NO(3)(-), ClO(4)(-) and CH(3)COO(-) were described in terms of the model and a good agreement between the theory and experiment was obtained for a wide range of surfactants and added electrolyte concentrations. A very pronounced Hofmeister effect in dependence of surface tension of cationic surfactants on the type of anion was found. Analysing this dependence in terms of the proposed model of ionic surfactant adsorption, strong correlation between "anion surface activity" (the model parameter accounting for ion penetration into the Stern layer), and the ion polarizability was obtained. That suggests that the mechanism related to the dispersive interaction of polarized ion with electric field at interface is responsible for Hofmeister series effects in surface activity of cationic surfactants. The same mechanism was proposed recently to explain the dependence of surface tension increase with electrolyte concentration on anion and cation type.
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Affiliation(s)
- G Para
- Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, ul. Niezapominajek 8, 30-239 Krakow, Poland
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Höfft O, Borodin A, Kahnert U, Kempter V, Dang LX, Jungwirth P. Surface Segregation of Dissolved Salt Ions. J Phys Chem B 2006; 110:11971-6. [PMID: 16800503 DOI: 10.1021/jp061437h] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Surface segregation of iodide, but not of fluoride or cesium ions, is observed by a combination of metastable impact electron spectroscopy (MIES) and ultraviolet photoelectron spectroscopy (UPS(HeI)) of amorphous solid water exposed to CsI or CsF vapor. The same surface ionic behavior is also derived from molecular dynamics (MD) simulations of the corresponding aqueous salt solutions. The MIES results show the propensity of iodide, but not fluoride, for the surface of the amorphous solid water film, providing thus strong evidence for the suggested presence of heavier halides (iodide, bromide, and to a lesser extent chloride) at the topmost layer of aqueous surfaces. In contrast, no appreciable surface segregation of ions is observed in methanol, neither in the experiment nor in the simulation. Furthermore, the present results indicate that, as far as the thermodynamic aspects of solvation of alkali halides are concerned, amorphous solid water and methanol surfaces behave similarly as surfaces of the corresponding liquids.
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Affiliation(s)
- Oliver Höfft
- Technische Universität Clausthal, Institut für Physik und Physikalische Technologien, Leibnizstr. 4, D-38678 Clausthal-Zellerfeld, Germany
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Archontis G, Leontidis E. Dissecting the stabilization of iodide at the air–water interface into components: A free energy analysis. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.12.051] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Muenter AH, DeZwaan JL, Nathanson GM. Collisions of DCl with Pure and Salty Glycerol: Enhancement of Interfacial D → H Exchange by Dissolved NaI. J Phys Chem B 2006; 110:4881-91. [PMID: 16526727 DOI: 10.1021/jp0563235] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The fate of DCl molecules striking pure glycerol and a 2.6 M NaI-glycerol solution is investigated using scattering, uptake, and residence time measurements. We find that dissolved Na+ and I- ions alter every gas-liquid pathway from the moment of contact of DCl with the surface to its eventual emergence as HCl. In particular, the salt enhances both trapping-desorption of DCl and interfacial DCl --> HCl exchange at the expense of DCl entry into the bulk solution. The reduced entry and enhanced desorption of thermalized DCl molecules are interpreted by assuming that Na+ and I- ions bind to interfacial OH groups and tie up surface sites that would otherwise capture incoming DCl molecules. These ion-glycerol interactions may also be responsible for enhancing interfacial D --> H exchange by disrupting the interfacial hydrogen bond network that carries the newly formed H+ ion away from its Cl- pair. This disruption may increase the fraction of interfacial Cl- and H+ that recombine and desorb immediately as HCl before the ions separate and diffuse deeply into the bulk.
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Affiliation(s)
- Annabel H Muenter
- Department of Chemistry, University of Wisconsin--Madison, 1101 University Avenue, Madison, Wisconsin 53706-1322, USA
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Affiliation(s)
- Pavel Jungwirth
- Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, and Center for Biomolecules and Complex Molecular Systems, Flemingovo nam. 2, 16610 Prague 6, Czech Republic.
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