1
|
Zazubovich V, Jankowiak R. High-Resolution Frequency-Domain Spectroscopic and Modeling Studies of Photosystem I (PSI), PSI Mutants and PSI Supercomplexes. Int J Mol Sci 2024; 25:3850. [PMID: 38612659 PMCID: PMC11011720 DOI: 10.3390/ijms25073850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2024] [Revised: 03/23/2024] [Accepted: 03/26/2024] [Indexed: 04/14/2024] Open
Abstract
Photosystem I (PSI) is one of the two main pigment-protein complexes where the primary steps of oxygenic photosynthesis take place. This review describes low-temperature frequency-domain experiments (absorption, emission, circular dichroism, resonant and non-resonant hole-burned spectra) and modeling efforts reported for PSI in recent years. In particular, we focus on the spectral hole-burning studies, which are not as common in photosynthesis research as the time-domain spectroscopies. Experimental and modeling data obtained for trimeric cyanobacterial Photosystem I (PSI3), PSI3 mutants, and PSI3-IsiA18 supercomplexes are analyzed to provide a more comprehensive understanding of their excitonic structure and excitation energy transfer (EET) processes. Detailed information on the excitonic structure of photosynthetic complexes is essential to determine the structure-function relationship. We will focus on the so-called "red antenna states" of cyanobacterial PSI, as these states play an important role in photochemical processes and EET pathways. The high-resolution data and modeling studies presented here provide additional information on the energetics of the lowest energy states and their chlorophyll (Chl) compositions, as well as the EET pathways and how they are altered by mutations. We present evidence that the low-energy traps observed in PSI are excitonically coupled states with significant charge-transfer (CT) character. The analysis presented for various optical spectra of PSI3 and PSI3-IsiA18 supercomplexes allowed us to make inferences about EET from the IsiA18 ring to the PSI3 core and demonstrate that the number of entry points varies between sample preparations studied by different groups. In our most recent samples, there most likely are three entry points for EET from the IsiA18 ring per the PSI core monomer, with two of these entry points likely being located next to each other. Therefore, there are nine entry points from the IsiA18 ring to the PSI3 trimer. We anticipate that the data discussed below will stimulate further research in this area, providing even more insight into the structure-based models of these important cyanobacterial photosystems.
Collapse
Affiliation(s)
- Valter Zazubovich
- Department of Physics, Concordia University, Montreal, QC H4B 1R6, Canada
| | - Ryszard Jankowiak
- Department of Chemistry, Kansas State University, Manhattan, KS 66506, USA
| |
Collapse
|
2
|
Novoderezhkin VI. Excitation energy equilibration in a trimeric LHCII complex involves unusual pathways. Phys Chem Chem Phys 2023; 25:26360-26369. [PMID: 37750240 DOI: 10.1039/d3cp02836d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
Abstract
We explore the energy equilibration within the LHCII trimer using various approaches, including the Redfield-Förster method (with different compartmentalization schemes) and the exact hierarchical equation of motion (HEOM). We demonstrate that the inter-monomeric migration in the trimeric LHCII complex is not limited to direct transfers between quasi-equilibrated chlorophylls (Chls) a, but also involves additional pathways with uphill transfers from Chls a to the stromal-side Chls b (connecting the Chls a clusters from different monomeric subunits). Although these uphill transfers are slow they still can increase the total rate of inter-monomeric transfers by a factor of 1.5. The same stromal-side Chls b also promote a depopulation of the Chl a604 long-lived state (blue-shifted and mixed with the lumenal-side Chls b). Due to the connection between the stromal- and lumenal-side Chls b clusters the intra- and inter-monomeric transfers from a604 to the main Chls a become faster by a factor of 1.6 and 1.75, respectively.
Collapse
Affiliation(s)
- Vladimir I Novoderezhkin
- A. N. Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Leninskie Gory, 119992, Moscow, Russia.
| |
Collapse
|
3
|
The role of mixed vibronic Q y-Q x states in green light absorption of light-harvesting complex II. Nat Commun 2020; 11:6011. [PMID: 33243997 PMCID: PMC7691517 DOI: 10.1038/s41467-020-19800-y] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 10/27/2020] [Indexed: 11/24/2022] Open
Abstract
The importance of green light for driving natural photosynthesis has long been underappreciated, however, under the presence of strong illumination, green light actually drives photosynthesis more efficiently than red light. This green light is absorbed by mixed vibronic Qy-Qx states, arising from chlorophyll (Chl)-Chl interactions, although almost nothing is known about these states. Here, we employ polarization-dependent two-dimensional electronic-vibrational spectroscopy to study the origin and dynamics of the mixed vibronic Qy-Qx states of light-harvesting complex II. We show the states in this region dominantly arise from Chl b and demonstrate how it is possible to distinguish between the degree of vibronic Qy versus Qx character. We find that the dynamics for states of predominately Chl b Qy versus Chl b Qx character are markedly different, as excitation persists for significantly longer in the Qx states and there is an oscillatory component to the Qx dynamics, which is discussed. Our findings demonstrate the central role of electronic-nuclear mixing in efficient light-harvesting and the different functionalities of Chl a and Chl b. The green component of the solar spectrum can efficiently drive natural photosynthesis, but the process has been little investigated due to the complexity of the excited states involved. Here the authors utilize polarization-dependent two-dimensional electronic-vibrational spectroscopy to define the origin and dynamics of these states in light-harvesting complex II.
Collapse
|
4
|
Guevara R, Mateos DM, Pérez Velázquez JL. Consciousness as an Emergent Phenomenon: A Tale of Different Levels of Description. ENTROPY (BASEL, SWITZERLAND) 2020; 22:E921. [PMID: 33286690 PMCID: PMC7597170 DOI: 10.3390/e22090921] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Revised: 08/15/2020] [Accepted: 08/19/2020] [Indexed: 01/17/2023]
Abstract
One of the biggest queries in cognitive sciences is the emergence of consciousness from matter. Modern neurobiological theories of consciousness propose that conscious experience is the result of interactions between large-scale neuronal networks in the brain, traditionally described within the realm of classical physics. Here, we propose a generalized connectionist framework in which the emergence of "conscious networks" is not exclusive of large brain areas, but can be identified in subcellular networks exhibiting nontrivial quantum phenomena. The essential feature of such networks is the existence of strong correlations in the system (classical or quantum coherence) and the presence of an optimal point at which the system's complexity and energy dissipation are maximized, whereas free-energy is minimized. This is expressed either by maximization of the information content in large scale functional networks or by achieving optimal efficiency through the quantum Goldilock effect.
Collapse
Affiliation(s)
- Ramón Guevara
- Integrative Neuroscience and Cognition Centre (INCC UMR8002), University of Paris and CNRS, 75270 Paris, France
- Department of Physics and Astronomy, University of Padova, 35131 Padova, Italy
| | - Diego M. Mateos
- Department of Science and Technology, Universidad Autónoma de Entre Ríos, Paraná 3100, Argentina;
- Instituto de Matemática Aplicada del Litoral (IMAL-CONICET-UNL), Santa Fe 3000, Argentina
| | | |
Collapse
|
5
|
Kozlov MI, Poddubnyy VV. Electron-Vibrational Spectra and Dynamics of the Lutein Molecule. J Phys Chem B 2020; 124:5780-5787. [PMID: 32573243 DOI: 10.1021/acs.jpcb.0c02511] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The carotenoid molecules such as lutein play an important role in the absorption of light and the following transfer of energy during photosynthesis. However, the study of these processes by the experimental methods only is quite difficult because some of the transitions between the electronic states of carotenoids are optically forbidden and the effect of vibrational states change also must be taken into account. In the present work, electronic-vibrational states of the lutein molecule in the LHCII complex of higher plants and in the diethyl ether solution were described using the ab initio methods. For lutein of LHCII, the electronic energy transfer processes were modeled. The role of the "hot" S1 states of lutein was shown to be of great importance.
Collapse
Affiliation(s)
- Maxim I Kozlov
- Chemistry Department, Lomonosov Moscow State University, 119991 Moscow, Russia
| | | |
Collapse
|
6
|
Leng X, Do TN, Akhtar P, Nguyen HL, Lambrev PH, Tan H. Hierarchical Equations of Motion Simulation of Temperature‐Dependent Two‐Dimensional Electronic Spectroscopy of the ChlorophyllaManifold in LHCII. Chem Asian J 2020; 15:1996-2004. [DOI: 10.1002/asia.202000467] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2020] [Revised: 05/11/2020] [Indexed: 01/12/2023]
Affiliation(s)
- Xuan Leng
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical SciencesNanyang Technological University 21 Nanyang Link 637371 Singapore Singapore
| | - Thanh Nhut Do
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical SciencesNanyang Technological University 21 Nanyang Link 637371 Singapore Singapore
| | - Parveen Akhtar
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical SciencesNanyang Technological University 21 Nanyang Link 637371 Singapore Singapore
- Biological Research Centre Szeged Temesvári körút 62 Szeged 6726 Hungary
- ELI-ALPS, ELI-HU Nonprofit Ltd. Wolfgang Sandner utca 3 Szeged 6728 Hungary
| | - Hoang Long Nguyen
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical SciencesNanyang Technological University 21 Nanyang Link 637371 Singapore Singapore
| | - Petar H. Lambrev
- Biological Research Centre Szeged Temesvári körút 62 Szeged 6726 Hungary
| | - Howe‐Siang Tan
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical SciencesNanyang Technological University 21 Nanyang Link 637371 Singapore Singapore
| |
Collapse
|
7
|
Do TN, Huerta-Viga A, Akhtar P, Nguyen HL, Nowakowski PJ, Khyasudeen MF, Lambrev PH, Tan HS. Revealing the excitation energy transfer network of Light-Harvesting Complex II by a phenomenological analysis of two-dimensional electronic spectra at 77 K. J Chem Phys 2019; 151:205101. [DOI: 10.1063/1.5125744] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Affiliation(s)
- Thanh Nhut Do
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Adriana Huerta-Viga
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Parveen Akhtar
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
- Biological Research Centre, Szeged, Temesvári Körút 62, Szeged 6726, Hungary
- ELI-ALPS, ELI-HU Nonprofit Ltd., Budapesti út 5, Szeged, Hungary
| | - Hoang Long Nguyen
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Paweł J. Nowakowski
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - M. Faisal Khyasudeen
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Petar H. Lambrev
- Biological Research Centre, Szeged, Temesvári Körút 62, Szeged 6726, Hungary
| | - Howe-Siang Tan
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| |
Collapse
|
8
|
Khyasudeen MF, Nowakowski PJ, Nguyen HL, Sim JH, Do TN, Tan HS. Studying the spectral diffusion dynamics of chlorophyll a and chlorophyll b using two-dimensional electronic spectroscopy. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2019.110480] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
|
9
|
Insights into the mechanisms and dynamics of energy transfer in plant light-harvesting complexes from two-dimensional electronic spectroscopy. BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS 2019; 1861:148050. [PMID: 31326408 DOI: 10.1016/j.bbabio.2019.07.005] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2019] [Revised: 07/01/2019] [Accepted: 07/15/2019] [Indexed: 12/25/2022]
Abstract
During the past two decades, two-dimensional electronic spectroscopy (2DES) and related techniques have emerged as a potent experimental toolset to study the ultrafast elementary steps of photosynthesis. Apart from the highly engaging albeit controversial analysis of the role of quantum coherences in the photosynthetic processes, 2DES has been applied to resolve the dynamics and pathways of energy and electron transport in various light-harvesting antenna systems and reaction centres, providing unsurpassed level of detail. In this paper we discuss the main technical approaches and their applicability for solving specific problems in photosynthesis. We then recount applications of 2DES to study the exciton dynamics in plant and photosynthetic light-harvesting complexes, especially light-harvesting complex II (LHCII) and the fucoxanthin-chlorophyll proteins of diatoms, with emphasis on the types of unique information about such systems that 2DES is capable to deliver. This article is part of a Special Issue entitled Light harvesting, edited by Dr. Roberta Croce.
Collapse
|
10
|
Ab initio model for the chlorophyll-lutein exciton coupling in the LHCII complex. Biophys Chem 2019; 246:16-24. [DOI: 10.1016/j.bpc.2019.01.001] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2018] [Revised: 12/27/2018] [Accepted: 01/02/2019] [Indexed: 11/20/2022]
|
11
|
Wu EC, Arsenault EA, Bhattacharyya P, Lewis NHC, Fleming GR. Two-dimensional electronic vibrational spectroscopy and ultrafast excitonic and vibronic photosynthetic energy transfer. Faraday Discuss 2019; 216:116-132. [DOI: 10.1039/c8fd00190a] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
2-Dimensional electronic vibrational spectroscopy presents a novel experimental and theoretical approach to study energy transfer.
Collapse
Affiliation(s)
- Eric C. Wu
- Department of Chemistry
- University of California
- Berkeley 94720
- USA
- Molecular Biophysics and Integrated Bioimaging Division
| | | | - Pallavi Bhattacharyya
- Department of Chemistry
- University of California
- Berkeley 94720
- USA
- Molecular Biophysics and Integrated Bioimaging Division
| | | | - Graham R. Fleming
- Department of Chemistry
- University of California
- Berkeley 94720
- USA
- Molecular Biophysics and Integrated Bioimaging Division
| |
Collapse
|
12
|
Marais A, Adams B, Ringsmuth AK, Ferretti M, Gruber JM, Hendrikx R, Schuld M, Smith SL, Sinayskiy I, Krüger TPJ, Petruccione F, van Grondelle R. The future of quantum biology. J R Soc Interface 2018; 15:20180640. [PMID: 30429265 PMCID: PMC6283985 DOI: 10.1098/rsif.2018.0640] [Citation(s) in RCA: 76] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2018] [Accepted: 10/12/2018] [Indexed: 01/17/2023] Open
Abstract
Biological systems are dynamical, constantly exchanging energy and matter with the environment in order to maintain the non-equilibrium state synonymous with living. Developments in observational techniques have allowed us to study biological dynamics on increasingly small scales. Such studies have revealed evidence of quantum mechanical effects, which cannot be accounted for by classical physics, in a range of biological processes. Quantum biology is the study of such processes, and here we provide an outline of the current state of the field, as well as insights into future directions.
Collapse
Affiliation(s)
- Adriana Marais
- Quantum Research Group, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
| | - Betony Adams
- Quantum Research Group, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
| | - Andrew K Ringsmuth
- Institute for Lasers, Life and Biophotonics, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
- ARC Centre of Excellence for Engineered Quantum Systems, The University of Queensland, St Lucia 4072, Australia
| | - Marco Ferretti
- Institute for Lasers, Life and Biophotonics, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - J Michael Gruber
- Institute for Lasers, Life and Biophotonics, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Ruud Hendrikx
- Institute for Lasers, Life and Biophotonics, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Maria Schuld
- Quantum Research Group, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
| | - Samuel L Smith
- Cavendish Laboratory, University of Cambridge, Cambridge, UK
| | - Ilya Sinayskiy
- Quantum Research Group, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
- National Institute for Theoretical Physics, KwaZulu-Natal, South Africa
| | - Tjaart P J Krüger
- Department of Physics, Faculty of Natural and Agricultural Sciences, University of Pretoria, Hatfield, South Africa
| | - Francesco Petruccione
- Quantum Research Group, School of Chemistry and Physics, University of KwaZulu-Natal, Durban 4001, South Africa
- National Institute for Theoretical Physics, KwaZulu-Natal, South Africa
| | - Rienk van Grondelle
- Institute for Lasers, Life and Biophotonics, Faculty of Sciences, VU University Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| |
Collapse
|
13
|
Zhang Z, Saurabh P, Dorfman KE, Debnath A, Mukamel S. Monitoring polariton dynamics in the LHCII photosynthetic antenna in a microcavity by two-photon coincidence counting. J Chem Phys 2018; 148:074302. [DOI: 10.1063/1.5004432] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Zhedong Zhang
- Department of Chemistry, University of California Irvine, Irvine, California 92697, USA
| | - Prasoon Saurabh
- Department of Chemistry, University of California Irvine, Irvine, California 92697, USA
| | - Konstantin E. Dorfman
- Department of Chemistry, University of California Irvine, Irvine, California 92697, USA
- State Key Laboratory of Precision Spectroscopy, East China Normal University, Shanghai 200062, China
| | - Arunangshu Debnath
- Department of Chemistry, University of California Irvine, Irvine, California 92697, USA
| | - Shaul Mukamel
- Department of Chemistry, University of California Irvine, Irvine, California 92697, USA
| |
Collapse
|
14
|
Hamada F, Murakami A, Akimoto S. Adaptation of Divinyl Chlorophyll a/b-Containing Cyanobacterium to Different Light Conditions: Three Strains of Prochlorococcus marinus. J Phys Chem B 2017; 121:9081-9090. [DOI: 10.1021/acs.jpcb.7b04835] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Fumiya Hamada
- Graduate
School of Science, Kobe University, Kobe 657-8501, Japan
| | - Akio Murakami
- Graduate
School of Science, Kobe University, Kobe 657-8501, Japan
- Kobe University Research Center for Inland Seas, Awaji 656-2401, Japan
| | - Seiji Akimoto
- Graduate
School of Science, Kobe University, Kobe 657-8501, Japan
| |
Collapse
|
15
|
Akhtar P, Zhang C, Do TN, Garab G, Lambrev PH, Tan HS. Two-Dimensional Spectroscopy of Chlorophyll a Excited-State Equilibration in Light-Harvesting Complex II. J Phys Chem Lett 2017; 8:257-263. [PMID: 27982601 DOI: 10.1021/acs.jpclett.6b02615] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
Excited-state relaxation dynamics and energy-transfer processes in the chlorophyll a (Chl a) manifold of the light-harvesting complex II (LHCII) were examined at physiological temperature using femtosecond two-dimensional electronic spectroscopy (2DES). The experiments were done under conditions free from singlet-singlet annihilation and anisotropic decay. Energy transfer between the different domains of the Chl a manifold was found to proceed on time scales from hundreds of femtoseconds to five picoseconds, before reaching equilibration. No component slower than 10 ps was observed in the spectral equilibration dynamics. We clearly observe the bidirectional (uphill and downhill) energy transfer of the equilibration process between excited states. This bidirectional energy flow, although implicit in the modeling and simulation of the EET processes, has not been observed in any prior transient absorption studies. Furthermore, we identified the spectral forms associated with the different energy transfer lifetimes in the equilibration process.
Collapse
Affiliation(s)
- Parveen Akhtar
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore 637371
- Biological Research Centre, Hungarian Academy of Sciences , Temesvári körút 62, Szeged 6726, Hungary
| | - Cheng Zhang
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore 637371
| | - Thanh Nhut Do
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore 637371
| | - Győző Garab
- Biological Research Centre, Hungarian Academy of Sciences , Temesvári körút 62, Szeged 6726, Hungary
| | - Petar H Lambrev
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore 637371
- Biological Research Centre, Hungarian Academy of Sciences , Temesvári körút 62, Szeged 6726, Hungary
| | - Howe-Siang Tan
- Division of Chemistry and Biological Chemistry, School of Physical and Mathematical Sciences, Nanyang Technological University , 21 Nanyang Link, Singapore 637371
| |
Collapse
|
16
|
Lewis NHC, Gruenke NL, Oliver TAA, Ballottari M, Bassi R, Fleming GR. Observation of Electronic Excitation Transfer Through Light Harvesting Complex II Using Two-Dimensional Electronic-Vibrational Spectroscopy. J Phys Chem Lett 2016; 7:4197-4206. [PMID: 27704843 PMCID: PMC6314458 DOI: 10.1021/acs.jpclett.6b02280] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Light-harvesting complex II (LHCII) serves a central role in light harvesting for oxygenic photosynthesis and is arguably the most important photosynthetic antenna complex. In this work, we present two-dimensional electronic-vibrational (2DEV) spectra of LHCII isolated from spinach, demonstrating the possibility of using this technique to track the transfer of electronic excitation energy between specific pigments within the complex. We assign the spectral bands via comparison with the 2DEV spectra of the isolated chromophores, chlorophyll a and b, and present evidence that excitation energy between the pigments of the complex are observed in these spectra. Finally, we analyze the essential components of the 2DEV spectra using singular value decomposition, which makes it possible to reveal the relaxation pathways within this complex.
Collapse
Affiliation(s)
- Nicholas H C Lewis
- Department of Chemistry, University of California , Berkeley, California 94 720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, United States
| | - Natalie L Gruenke
- Department of Chemistry, University of California , Berkeley, California 94 720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, United States
| | - Thomas A A Oliver
- Department of Chemistry, University of California , Berkeley, California 94 720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, United States
| | - Matteo Ballottari
- Dipartimento di Biotecnologie, Facoltà di Scienze, Universitá di Verona , Strada Le Grazie, I-37134 Verona, Italia
| | - Roberto Bassi
- Dipartimento di Biotecnologie, Facoltà di Scienze, Universitá di Verona , Strada Le Grazie, I-37134 Verona, Italia
| | - Graham R Fleming
- Department of Chemistry, University of California , Berkeley, California 94 720, United States
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
- Kavli Energy Nanoscience Institute at Berkeley, Berkeley, California 94720, United States
| |
Collapse
|
17
|
Hamada F, Murakami A, Akimoto S. Comparative Analysis of Ultrafast Excitation Energy-Transfer Pathways in Three Strains of Divinyl Chlorophyll a/b-Containing Cyanobacterium, Prochlorococcus marinus. J Phys Chem B 2015; 119:15593-600. [DOI: 10.1021/acs.jpcb.5b10073] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Fumiya Hamada
- Graduate
School of Science, Kobe University, Kobe 657-8501, Japan
| | - Akio Murakami
- Graduate
School of Science, Kobe University, Kobe 657-8501, Japan
- Kobe University Research Center for Inland Seas, Awaji 656-2401, Japan
| | - Seiji Akimoto
- Graduate
School of Science, Kobe University, Kobe 657-8501, Japan
- Molecular
Photoscience Research Center, Kobe University, Kobe 657-8501, Japan
| |
Collapse
|
18
|
Kosumi D, Nishiguchi T, Sugisaki M, Hashimoto H. Ultrafast coherent spectroscopic investigation on photosynthetic pigment chlorophyll a utilizing 20 fs pulses. J Photochem Photobiol A Chem 2015. [DOI: 10.1016/j.jphotochem.2015.06.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
|
19
|
Duan HG, Stevens AL, Nalbach P, Thorwart M, Prokhorenko VI, Miller RJD. Two-Dimensional Electronic Spectroscopy of Light-Harvesting Complex II at Ambient Temperature: A Joint Experimental and Theoretical Study. J Phys Chem B 2015; 119:12017-27. [PMID: 26301382 DOI: 10.1021/acs.jpcb.5b05592] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have performed broad-band two-dimensional (2D) electronic spectroscopy of light-harvesting complex II (LHCII) at ambient temperature. We found that electronic dephasing occurs within ∼60 fs and inhomogeneous broadening is approximately 120 cm(-1). A three-dimensional global fit analysis allows us to identify several time scales in the dynamics of the 2D spectra ranging from 100 fs to ∼10 ps and to uncover the energy-transfer pathways in LHCII. In particular, the energy transfer between the chlorophyll b and chlorophyll a pools occurs within ∼1.1 ps. Retrieved 2D decay-associated spectra also uncover the spectral positions of corresponding diagonal peaks in the 2D spectra. Residuals in the decay traces exhibit periodic modulations with different oscillation periods. However, only one of them can be associated with the excitonic cross-peaks in the 2D spectrum, while the remaining ones are presumably of vibrational origin. For the interpretation of the spectroscopic data, we have applied a refined exciton model for LHCII. It reproduces the linear absorption, circular dichroism, and 2D spectra at different waiting times. Several components of the energy transport are revealed from theoretical simulations that agree well with the experimental observations.
Collapse
Affiliation(s)
- Hong-Guang Duan
- I. Institut für Theoretische Physik, Universität Hamburg , Jungiusstraße 9, 20355 Hamburg, Germany.,Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149, 22761 Hamburg, Germany.,The Hamburg Center for Ultrafast Imaging , Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Amy L Stevens
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Peter Nalbach
- I. Institut für Theoretische Physik, Universität Hamburg , Jungiusstraße 9, 20355 Hamburg, Germany.,The Hamburg Center for Ultrafast Imaging , Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Michael Thorwart
- I. Institut für Theoretische Physik, Universität Hamburg , Jungiusstraße 9, 20355 Hamburg, Germany.,The Hamburg Center for Ultrafast Imaging , Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Valentyn I Prokhorenko
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149, 22761 Hamburg, Germany
| | - R J Dwayne Miller
- Max Planck Institute for the Structure and Dynamics of Matter , Luruper Chaussee 149, 22761 Hamburg, Germany.,The Hamburg Center for Ultrafast Imaging , Luruper Chaussee 149, 22761 Hamburg, Germany
| |
Collapse
|
20
|
Schlau-Cohen GS. Principles of light harvesting from single photosynthetic complexes. Interface Focus 2015; 5:20140088. [PMID: 26052423 DOI: 10.1098/rsfs.2014.0088] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
Photosynthetic systems harness sunlight to power most life on Earth. In the initial steps of photosynthetic light harvesting, absorbed energy is converted to chemical energy with near-unity quantum efficiency. This is achieved by an efficient, directional and regulated flow of energy through a network of proteins. Here, we discuss the following three key principles of this flow and of photosynthetic light harvesting: thermal fluctuations of the protein structure; intrinsic conformational switches with defined functional consequences; and environmentally triggered conformational switches. Through these principles, photosynthetic systems balance two types of operational costs: metabolic costs, or the cost of maintaining and running the molecular machinery, and opportunity costs, or the cost of losing any operational time. Understanding how the molecular machinery and dynamics are designed to balance these costs may provide a blueprint for improved artificial light-harvesting devices. With a multi-disciplinary approach combining knowledge of biology, this blueprint could lead to low-cost and more effective solar energy conversion. Photosynthetic systems achieve widespread light harvesting across the Earth's surface; in the face of our growing energy needs, this is functionality we need to replicate, and perhaps emulate.
Collapse
Affiliation(s)
- G S Schlau-Cohen
- Department of Chemistry , Massachusetts Institute of Technology , 77 Massachusetts Avenue, 6-225, Cambridge, MA 02139 , USA
| |
Collapse
|
21
|
Schlau-Cohen GS, Yang HY, Krüger TPJ, Xu P, Gwizdala M, van Grondelle R, Croce R, Moerner WE. Single-Molecule Identification of Quenched and Unquenched States of LHCII. J Phys Chem Lett 2015; 6:860-7. [PMID: 26262664 DOI: 10.1021/acs.jpclett.5b00034] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
In photosynthetic light harvesting, absorbed sunlight is converted to electron flow with near-unity quantum efficiency under low light conditions. Under high light conditions, plants avoid damage to their molecular machinery by activating a set of photoprotective mechanisms to harmlessly dissipate excess energy as heat. To investigate these mechanisms, we study the primary antenna complex in green plants, light-harvesting complex II (LHCII), at the single-complex level. We use a single-molecule technique, the Anti-Brownian Electrokinetic trap, which enables simultaneous measurements of fluorescence intensity, lifetime, and spectra in solution. With this approach, including the first measurements of fluorescence lifetime on single LHCII complexes, we access the intrinsic conformational dynamics. In addition to an unquenched state, we identify two partially quenched states of LHCII. Our results suggest that there are at least two distinct quenching sites with different molecular compositions, meaning multiple dissipative pathways in LHCII. Furthermore, one of the quenched conformations significantly increases in relative population under environmental conditions mimicking high light.
Collapse
Affiliation(s)
| | - Hsiang-Yu Yang
- †Department of Chemistry, Stanford University, Stanford, California 94305, United States
| | - Tjaart P J Krüger
- ‡Department of Physics, University of Pretoria, Private bag X20, Hatfield 0028, South Africa
| | - Pengqi Xu
- §Department of Physics and Astronomy, Faculty of Sciences, VU University Amsterdam and LaserLab Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Michal Gwizdala
- §Department of Physics and Astronomy, Faculty of Sciences, VU University Amsterdam and LaserLab Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Rienk van Grondelle
- §Department of Physics and Astronomy, Faculty of Sciences, VU University Amsterdam and LaserLab Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - Roberta Croce
- §Department of Physics and Astronomy, Faculty of Sciences, VU University Amsterdam and LaserLab Amsterdam, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands
| | - W E Moerner
- †Department of Chemistry, Stanford University, Stanford, California 94305, United States
| |
Collapse
|
22
|
Fuciman M, Enriquez MM, Polívka T, Dall'Osto L, Bassi R, Frank HA. Role of xanthophylls in light harvesting in green plants: a spectroscopic investigation of mutant LHCII and Lhcb pigment-protein complexes. J Phys Chem B 2012; 116:3834-49. [PMID: 22372667 DOI: 10.1021/jp210042z] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The spectroscopic properties and energy transfer dynamics of the protein-bound chlorophylls and xanthophylls in monomeric, major LHCII complexes, and minor Lhcb complexes from genetically altered Arabidopsis thaliana plants have been investigated using both steady-state and time-resolved absorption and fluorescence spectroscopic methods. The pigment-protein complexes that were studied contain Chl a, Chl b, and variable amounts of the xanthophylls, zeaxanthin (Z), violaxanthin (V), neoxanthin (N), and lutein (L). The complexes were derived from mutants of plants denoted npq1 (NVL), npq2lut2 (Z), aba4npq1lut2 (V), aba4npq1 (VL), npq1lut2 (NV), and npq2 (LZ). The data reveal specific singlet energy transfer routes and excited state spectra and dynamics that depend on the xanthophyll present in the complex.
Collapse
Affiliation(s)
- Marcel Fuciman
- Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States
| | | | | | | | | | | |
Collapse
|
23
|
Schlau-Cohen GS, Fleming GR. Structure, Dynamics, and Function in the Major Light-Harvesting Complex of Photosystem II. Aust J Chem 2012. [DOI: 10.1071/ch12022] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
In natural light-harvesting systems, pigment-protein complexes (PPC) convert sunlight to chemical energy with near unity quantum efficiency. PPCs exhibit emergent properties that cannot be simply extrapolated from knowledge of their component parts. In this Perspective, we examine the design principles of PPCs, focussing on the major light-harvesting complex of Photosystem II (LHCII), the most abundant PPC in green plants. Studies using two-dimensional electronic spectroscopy (2DES) provide an incisive tool to probe the electronic, energetic, and spatial landscapes that enable the efficiency observed in photosynthetic light-harvesting. Using the information about energy transfer pathways, quantum effects, and excited state geometry contained within 2D spectra, the excited state properties can be linked back to the molecular structure. This understanding of the structure-function relationships of natural systems constitutes a step towards a blueprint for the construction of artificial light-harvesting devices that can reproduce the efficacy of natural systems.
Collapse
|
24
|
Novoderezhkin V, Marin A, van Grondelle R. Intra- and inter-monomeric transfers in the light harvesting LHCII complex: the Redfield-Förster picture. Phys Chem Chem Phys 2011; 13:17093-103. [PMID: 21866281 DOI: 10.1039/c1cp21079c] [Citation(s) in RCA: 114] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We further develop the model of energy transfer in the LHCII trimer based on a quantitative fit of the linear spectra (including absorption (OD), linear dichroism (LD), circular dichroism (CD), and fluorescence (FL)) and transient absorption (TA) kinetics upon 650 nm and 662 nm excitation. The spectral shapes and relaxation/migration rates have been calculated using the combined Redfield-Förster approach capable of correctly describing fast relaxation within strongly coupled chlorophyll (Chl) a and b clusters and slow migration between them. Within each monomeric subunit of the trimeric complex there is fast (sub-ps) conversion from Chl's b to Chl's a at the stromal side accompanied by slow (>10 ps) equilibration between the stromal- and lumenal-side Chl a clusters in combination with slow (>13 ps) population of Chl's a from the 'bottleneck' Chl a604 site. The connection between monomeric subunits is determined by exciton coupling between the stromal-side Chl's b from the two adjacent subunits (Chl b601'-608-609 cluster) making a simultaneous fast (sub-ps) population of the Chl's a possible from both subunits. Final equilibration occurs via slow (>20 ps) migration between the Chl a clusters located on different monomeric subunits. This migration includes up-hill transfers from the red-most Chl a610-611-612 clusters located at the peripheral side in each subunit to the Chl a602-603 dimers located at the inner side of the trimeric LHCII complex.
Collapse
Affiliation(s)
- Vladimir Novoderezhkin
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992, Moscow, Russia.
| | | | | |
Collapse
|
25
|
Two-dimensional electronic spectroscopy and photosynthesis: Fundamentals and applications to photosynthetic light-harvesting. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.04.025] [Citation(s) in RCA: 137] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|
26
|
Wong CY, Scholes GD. Biexcitonic Fine Structure of CdSe Nanocrystals Probed by Polarization-Dependent Two-Dimensional Photon Echo Spectroscopy. J Phys Chem A 2010; 115:3797-806. [DOI: 10.1021/jp1079197] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Cathy Y. Wong
- Department of Chemistry, 80 St. George Street, Institute for Optical Sciences, and Centre for Quantum Information and Quantum Control, University of Toronto, Toronto, Ontario, M5S 3H6 Canada
| | - Gregory D. Scholes
- Department of Chemistry, 80 St. George Street, Institute for Optical Sciences, and Centre for Quantum Information and Quantum Control, University of Toronto, Toronto, Ontario, M5S 3H6 Canada
| |
Collapse
|
27
|
Müh F, Madjet MEA, Renger T. Structure-Based Identification of Energy Sinks in Plant Light-Harvesting Complex II. J Phys Chem B 2010; 114:13517-35. [DOI: 10.1021/jp106323e] [Citation(s) in RCA: 144] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Frank Müh
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 36a, D-14195 Berlin, Germany, and Institut für Theoretische Physik, Johannes Kepler Universität Linz, Altenberger Str. 69, 4040 Linz, Austria
| | - Mohamed El-Amine Madjet
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 36a, D-14195 Berlin, Germany, and Institut für Theoretische Physik, Johannes Kepler Universität Linz, Altenberger Str. 69, 4040 Linz, Austria
| | - Thomas Renger
- Institut für Chemie und Biochemie, Freie Universität Berlin, Fabeckstr. 36a, D-14195 Berlin, Germany, and Institut für Theoretische Physik, Johannes Kepler Universität Linz, Altenberger Str. 69, 4040 Linz, Austria
| |
Collapse
|
28
|
Novoderezhkin VI, van Grondelle R. Physical origins and models of energy transfer in photosynthetic light-harvesting. Phys Chem Chem Phys 2010; 12:7352-65. [PMID: 20532406 DOI: 10.1039/c003025b] [Citation(s) in RCA: 152] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
We perform a quantitative comparison of different energy transfer theories, i.e. modified Redfield, standard and generalized Förster theories, as well as combined Redfield-Förster approach. Physical limitations of these approaches are illustrated and critical values of the key parameters indicating their validity are found. We model at a quantitative level the spectra and dynamics in two photosynthetic antenna complexes: in phycoerythrin 545 from cryptophyte algae and in trimeric LHCII complex from higher plants. These two examples show how the structural organization determines a directed energy transfer and how equilibration within antenna subunits and migration between subunits are superimposed.
Collapse
Affiliation(s)
- Vladimir I Novoderezhkin
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992, Moscow, Russia
| | | |
Collapse
|
29
|
Schlau-Cohen GS, Calhoun TR, Ginsberg NS, Read EL, Ballottari M, Bassi R, van Grondelle R, Fleming GR. Pathways of energy flow in LHCII from two-dimensional electronic spectroscopy. J Phys Chem B 2010; 113:15352-63. [PMID: 19856954 DOI: 10.1021/jp9066586] [Citation(s) in RCA: 161] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Photosynthetic light-harvesting complexes absorb energy and guide photoexcitations to reaction centers with speed and efficacy that produce near-perfect efficiency. Light harvesting complex II (LHCII) is the most abundant light-harvesting complex and is responsible for absorbing the majority of light energy in plants. We apply two-dimensional electronic spectroscopy to examine energy flow in LHCII. This technique allows for direct mapping of excitation energy pathways as a function of absorption and emission wavelength. The experimental and theoretical results reveal that excitation energy transfers through the complex on three time scales: previously unobserved sub-100 fs relaxation through spatially overlapping states, several hundred femtosecond transfer between nearby chlorophylls, and picosecond energy transfer steps between layers of pigments. All energy is observed to collect into the energetically lowest and most delocalized states, which serve as exit sites. We examine the angular distribution of optimal energy transfer produced by this delocalized electronic structure and discuss how it facilitates the exit step in which the energy moves from LHCII to other complexes toward the reaction center.
Collapse
|
30
|
Ishizaki A, Calhoun TR, Schlau-Cohen GS, Fleming GR. Quantum coherence and its interplay with protein environments in photosynthetic electronic energy transfer. Phys Chem Chem Phys 2010; 12:7319-37. [DOI: 10.1039/c003389h] [Citation(s) in RCA: 282] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
|
31
|
Nagasawa Y, Mukai R, Mori K, Muramatsu M, Miyasaka H. Effect of ultrafast electron transfer on photon echo signal: Decoherence process in electron-donating solvents. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2009.10.031] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
32
|
Bandaria JN, Cheatum CM, Kohen A. Examination of enzymatic H-tunneling through kinetics and dynamics. J Am Chem Soc 2009; 131:10151-5. [PMID: 19621965 DOI: 10.1021/ja902120t] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In recent years, kinetic measurements of isotope effects of enzyme-catalyzed reactions and their temperature dependence led to the development of theoretical models that were used to rationalize the findings. These models suggested that motions at the femto- to picosecond (fs to ps) time scale modulate the environment of the catalyzed reaction. Due to the fast nature of motions that directly affect the cleavage of a covalent bond, it is challenging to correlate the enzyme kinetics and dynamics related to that step. We report a study of formate dehydrogenase (FDH) that compares the temperature dependence of intrinsic kinetic isotope effects (KIEs) to measurements of the environmental dynamics at the fs-ps time scale (Bandaria et al. J. Am. Chem. Soc. 2008, 130, 22-23). The findings from this comparison of experimental kinetics and dynamics are consistent with models of environmentally coupled H-tunneling models, also known as Marcus-like models. Apparently, at tunneling ready conformations, the donor-acceptor distance, orientation, and fluctuations seems to be well tuned for H-transfer and are not affected by thermal fluctuations slower than 10 ps. This phenomenon has been suggested in the past to be quite general in enzymatic reactions. Here, the kinetics and the dynamics measurements on a single chemical step and on fs-ps time scale, respectively, provide new insight and support for the relevant theoretical models. Furthermore, this methodology could be applied to other systems and be used to examine mutants for which the organization of the donor and acceptor is not ideal, or enzymes with different rigidity and different temperature optimum.
Collapse
Affiliation(s)
- Jigar N Bandaria
- Department of Chemistry, University of Iowa, Iowa City, Iowa 52242, USA
| | | | | |
Collapse
|
33
|
Cheng YC, Ahn TK, Avenson TJ, Zigmantas D, Niyogi KK, Ballottari M, Bassi R, Fleming GR. Kinetic modeling of charge-transfer quenching in the CP29 minor complex. J Phys Chem B 2008; 112:13418-23. [PMID: 18826191 DOI: 10.1021/jp802730c] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We performed transient absorption (TA) measurements on CP29 minor light-harvesting complexes that were reconstituted in vitro with either violaxanthin (Vio) or zeaxanthin (Zea) and demonstrate that the Zea-bound CP29 complexes exhibit charge-transfer (CT) quenching that has been correlated with the energy-dependent quenching (qE) in higher plants. Simulations of the difference TA kinetics reveal two-phase kinetics for intracomplex energy transfer to the CT quenching site in CP29 complexes, with a fast <500 fs component and a approximately 6 ps component. Specific chlorophyll sites within CP29 are identified as likely locations for CT quenching. We also construct a kinetic model for CT quenching during qE in an intact system that incorporates CP29 as a CT trap and show that the model is consistent with previous in vivo measurements on spinach thylakoid membranes. Finally, we compare simulations of CT quenching in thylakoids with those of the individual CP29 complexes and propose that CP29 rather than LHCII is a site of CT quenching.
Collapse
Affiliation(s)
- Yuan-Chung Cheng
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | | | | | | | | | | | | | | |
Collapse
|
34
|
Salvador MR, Sreekumari Nair P, Cho M, Scholes GD. Interaction between excitons determines the non-linear response of nanocrystals. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.12.020] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
35
|
Richter M, Renger T, Renger G, Knorr A. Nonperturbative theory for the optical response to strong light of the light harvesting complex II of plants: Saturation of the fluorescence quantum yield. J Chem Phys 2007; 127:075105. [PMID: 17718636 DOI: 10.1063/1.2756523] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Recent progress in resolution of the structure of the light harvesting complex II provides the basis for theoretical predictions on nonlinear optical properties from microscopic calculations. An approach to absorption and fluorescence is presented within the framework of Bloch equations using a correlation expansion of relevant many particle interactions. The equations derived within the framework of this theory are applied to describe fluorescence saturation phenomena. The experimentally observed decrease of the normalized fluorescence quantum yield from 1 to 0.0001 upon increasing the intensity of laser pulse excitation at 645 nm by five orders of magnitude [R Schödel et al., Biophys. J. 71, 3370 (1996)] is explained by Pauli blocking effects of optical excitation and excitation energy transfer.
Collapse
Affiliation(s)
- M Richter
- Nichtlineare Optik und Quantenelektronik, Institut für Theoretische Physik, Technische Universität Berlin, Hardenbergstrasse 36, 10623 Berlin, Germany.
| | | | | | | |
Collapse
|
36
|
Cheng YC, Lee H, Fleming GR. Efficient Simulation of Three-Pulse Photon-Echo Signals with Application to the Determination of Electronic Coupling in a Bacterial Photosynthetic Reaction Center. J Phys Chem A 2007; 111:9499-508. [PMID: 17696328 DOI: 10.1021/jp0735177] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A time-nonlocal quantum master equation coupled with a perturbative scheme to evaluate the third-order polarization in the phase-matching direction k(s) = -k(1) + k(2) + k(3) is used to efficiently simulate three-pulse photon-echo signals. The present method is capable of describing photon-echo peak shifts including pulse overlap and bath memory effects. In addition, the method treats the non-Markovian evolution of the density matrix and the third-order polarization in a consistent manner, thus is expected to be useful in systems with rapid and complex dynamics. We apply the theoretical method to describe one- and two-color three-pulse photon-echo peak shift experiments performed on a bacterial photosynthetic reaction center and demonstrate that, by properly incorporating the pulse overlap effects, the method can be used to describe simultaneously all peak shift experiments and determine the electronic coupling between the localized Q(y) excitations on the bacteriopheophytin (BPhy) and accessory bateriochlorophyll (BChl) in the reaction center. A value of J = 250 cm(-1) is found for the coupling between BPhy and BChl.
Collapse
Affiliation(s)
- Yuan-Chung Cheng
- Department of Chemistry and QB3 Institute, University of California Berkeley, Berkeley, California 94720, USA
| | | | | |
Collapse
|
37
|
Novoderezhkin VI, Palacios MA, van Amerongen H, van Grondelle R. Excitation dynamics in the LHCII complex of higher plants: modeling based on the 2.72 Angstrom crystal structure. J Phys Chem B 2007; 109:10493-504. [PMID: 16852271 DOI: 10.1021/jp044082f] [Citation(s) in RCA: 210] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have modeled steady-state spectra and energy-transfer dynamics in the peripheral plant light-harvesting complex LHCII using new structural data. The dynamics of the chlorophyll (Chl) b-->Chl a transfer and decay of selectively excited "bottleneck" Chl a and b states have been studied by femtosecond pump-probe spectroscopy. We propose an exciton model of the LHCII trimer (with specific site energies) which allows a simultaneous quantitative fit of the absorption, linear-dichroism, steady-state fluorescence spectra, and transient absorption kinetics upon excitation at different wavelengths. In the modeling we use the experimental exciton-phonon spectral density and modified Redfield theory. We have found that fast b-->a transfer is determined by a good connection of the Chls b to strongly coupled Chl a clusters, i.e., a610-a611-a612 trimer and a602-a603 and a613-a614 dimers. Long-lived components of the energy-transfer kinetics are determined by a quick population of red-shifted Chl b605 and blue-shifted Chl a604 followed by a very slow (3 ps for b605 and 12 ps for a604) flow of energy from these monomeric bottleneck sites to the Chl a clusters. The dynamics within the Chl a region is determined by fast (with time constants down to sub-100 fs) exciton relaxation within the a610-a611-a612 trimer, slower 200-300 fs relaxation within the a602-a603 and a613-a614 dimers, even slower 300-800 fs migration between these clusters, and very slow transfer from a604 to the quasi-equilibrated a sites. The final equilibrium is characterized by predominant population of the a610-a611-a612 cluster (mostly the a610 site). The location of this cluster on the outer side of the LHCII trimer probably provides a good connection with the other subunits of PSII.
Collapse
Affiliation(s)
- Vladimir I Novoderezhkin
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992 Moscow, Russia
| | | | | | | |
Collapse
|
38
|
Dietzek B, Christensson N, Kjellberg P, Pascher T, Pullerits T, Yartsev A. Appearance of intramolecular high-frequency vibrations in two-dimensional, time-integrated three-pulse photon echo data. Phys Chem Chem Phys 2007; 9:701-10. [PMID: 17268681 DOI: 10.1039/b614332f] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
An alternative experimental outline to measure homodyne detected three-pulse photon-echo data is presented. The novel experimental approach allowing for online monitoring and correction of experimental timing and stability is discussed in detail using the paradigm system of Nile blue in alcohol solution. It is shown that excellent signal-to-noise ratios together with high reproducibility of the data can be routinely achieved. We report in detail on the appearance of high-frequency intramolecular vibrations in the two-dimensional three-pulse photon-echo data and suggest that besides the conventionally discussed three-pulse photon-echo peak-shift the width of the integrated echo signal as a function of population time contains identical and easily accessible information on high-frequency intramolecular vibrations. A comparison of experimental data with theoretical modeling is performed showing that the observed echo-width oscillations are in line with predictions of the Brownian oscillator model.
Collapse
Affiliation(s)
- Benjamin Dietzek
- Department of Chemical Physics, Lund University, SE-22100, Lund, Sweden.
| | | | | | | | | | | |
Collapse
|
39
|
Vaswani HM, Stenger J, Fromme P, Fleming GR. One- and Two-Color Photon Echo Peak Shift Studies of Photosystem I. J Phys Chem B 2006; 110:26303-12. [PMID: 17181289 DOI: 10.1021/jp061008j] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Wavelength-dependent one- and two-color photon echo peak shift spectroscopy was performed on the chlorophyll Qy band of trimeric photosystem I from Thermosynechococcus elongatus. Sub-100 fs energy transfer steps were observed in addition to longer time scales previously measured by others. In the main PSI absorption peak (675-700 nm), the peak shift decays more slowly with increasing wavelength, implying that energy transfer between pigments of similar excitation energy is slower for pigments with lower site energies. In the far-red region (715 nm), the decay of the peak shift is more rapid and is complete by 1 ps, a consequence of the strong electron-phonon coupling present in this spectral region. Two-color photon echo peak shift data show strong excitonic coupling between pigments absorbing at 675 nm and those absorbing at 700 nm. The one- and two-color peak shifts were simulated using the previously developed energy transfer model (J. Phys. Chem. B 2002, 106, 10251; Biophysical Journal 2003, 85, 140). The simulations agree well with the experimental data. Two-color photon echo peak shift is shown to be far more sensitive to variations in the molecular Hamiltonian than one-color photon echo peak shift spectroscopy.
Collapse
Affiliation(s)
- Harsha M Vaswani
- Department of Chemistry, University of California at Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | | | | | | |
Collapse
|
40
|
Coulombic couplings between pigments in the major light-harvesting complex LHC II calculated by the transition density cube method. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2006.09.009] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
|
41
|
Palacios MA, Standfuss J, Vengris M, van Oort BF, van Stokkum IHM, Kühlbrandt W, van Amerongen H, van Grondelle R. A comparison of the three isoforms of the light-harvesting complex II using transient absorption and time-resolved fluorescence measurements. PHOTOSYNTHESIS RESEARCH 2006; 88:269-85. [PMID: 16691368 DOI: 10.1007/s11120-006-9042-3] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2005] [Accepted: 01/10/2006] [Indexed: 05/09/2023]
Abstract
In this article we report the characterization of the energy transfer process in the reconstituted isoforms of the plant light-harvesting complex II. Homotrimers of recombinant Lhcb1 and Lhcb2 and monomers of Lhcb3 were compared to native trimeric complexes. We used low-intensity femtosecond transient absorption (TA) and time-resolved fluorescence measurements at 77 K and at room temperature, respectively, to excite the complexes selectively in the chlorophyll b absorption band at 650 nm with 80 fs pulses and on the high-energy side of the chlorophyll a absorption band at 662 nm with 180 fs pulses. The subsequent kinetics was probed at 30-35 different wavelengths in the region from 635 to 700 nm. The rate constants for energy transfer were very similar, indicating that structurally the three isoforms are highly homologous and that probably none of them play a more significant role in light-harvesting and energy transfer. No signature has been found in the transient absorption measurements at 77 K for Lhcb3 which might suggest that this protein acts as a relative energy sink of the excitations in heterotrimers of Lhcb1/Lhcb2/Lhcb3. Minor differences in the amplitudes of some of the rate constants and in the absorption and fluorescence properties of some pigments were observed, which are ascribed to slight variations in the environment surrounding some of the chromophores depending on the isoform. The decay of the fluorescence was also similar for the three isoforms and multi-exponential, characterized by two major components in the ns regime and a minor one in the ps regime. In agreement with previous transient absorption measurements on native LHC II complexes, Chl b --> Chl a energy transfer exhibited very fast channels but at the same time a slow component (ps). The Chls absorbing at around 660 nm exhibited both fast energy transfer which we ascribe to transfer from 'red' Chl b towards 'red' Chl a and slow transfer from 'blue' Chl a towards 'red' Chl a. The results are discussed in the context of the new available atomic models for LHC II.
Collapse
Affiliation(s)
- Miguel A Palacios
- Department of Biophysics and Physics of Complex Systems, Division of Physics and Astronomy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands.
| | | | | | | | | | | | | | | |
Collapse
|
42
|
Cho BM, Carlsson CF, Jimenez R. Photon echo spectroscopy of porphyrins and heme proteins: Effects of quasidegenerate electronic structure on the peak shift decay. J Chem Phys 2006; 124:144905. [PMID: 16626243 DOI: 10.1063/1.2186318] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Three pulse photon echo peak shift spectroscopy and transient grating measurements on Zn-substituted cytochrome c, Zn-tetraphenylporphyrin, and Zn-protoporphyrin IX are reported. The effects of protein conformation, axial ligation, and solvent are investigated. Numerical simulations of the peak shift and transient grating experiments are presented. The simulations employed recently derived optical response functions for square-symmetric molecules with doubly degenerate excited states. Simulations exploring the effects of excited-state energy splitting, symmetric and asymmetric fluctuations, and excited-state lifetime show that the time scales of the peak shift decay in the three-level system largely reflect the same dynamics as in the two-level system. However, the asymptotic peak shift, which is a clear indicator of inhomogeneous broadening in a two-level system, must be interpreted more carefully for three-level systems, as it is also influenced by the magnitude of the excited-state splitting. The calculated signals qualitatively reproduce the data.
Collapse
Affiliation(s)
- Byung Moon Cho
- JILA, University of Colorado and National Institute of Standards and Technology, Boulder, Colorado 80309-0440, USA
| | | | | |
Collapse
|
43
|
Linnanto J, Martiskainen J, Lehtovuori V, Ihalainen J, Kananavicius R, Barbato R, Korppi-Tommola J. Excitation energy transfer in the LHC-II trimer: a model based on the new 2.72 A structure. PHOTOSYNTHESIS RESEARCH 2006; 87:267-79. [PMID: 16450050 DOI: 10.1007/s11120-005-9004-1] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2004] [Accepted: 06/23/2005] [Indexed: 05/06/2023]
Abstract
Energy transfer of the light harvesting complex LHC-II trimer, extracted from spinach, was studied in the Q(y) region at room temperature by femtosecond transient absorption spectroscopy. Configuration interaction exciton method [Linnanto et al. (1999) J Phys Chem B 103: 8739-8750] and 2.72 A structural information reported by Liu et al. was used to calculate spectroscopic properties and excitation energy transfer rates of the complex. Site energies of the pigments and coupling constants of pigment pairs in close contact were calculated by using a quantum chemical configuration interaction method. Gaussian random variation of the diagonal and off-diagonal exciton matrix elements was used to account for inhomogeneous broadening. Rate calculations included only the excitonic states initially excited and probed in the experiments. A kinetic model was used to simulate time and wavelength dependent absorption changes after excitation on the blue side of the Q(y) transition and compared to experimentally recorded rates. Analysis of excitonic wavefunctions allowed identification of pigments initially excited and probed into later. It was shown that excitation of the blue side of the Q(y) band of a single LHC-II complex results in energy transfer from chlorophyll b's of the lumenal side to chlorophyll a's located primarly on one of the monomers of the stromal side.
Collapse
Affiliation(s)
- Juha Linnanto
- Physical Chemistry Laboratory, University of Jyväskylä, P.O. Box 35, Jyväskylä, 40014, Finland.
| | | | | | | | | | | | | |
Collapse
|
44
|
Sarkisov OM, Gostev FE, Shelaev IV, Novoderezhkin VI, Gopta OA, Mamedov MD, Semenov AY, Nadtochenko VA. Long-lived coherent oscillations of the femtosecond transients in cyanobacterial photosystem I. Phys Chem Chem Phys 2006; 8:5671-8. [PMID: 17149488 DOI: 10.1039/b605660a] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The pulsed excitation of electronic levels coupled to specific nuclear modes by a 26 fs laser pulse at 706 nm creates a wavepacket in the nuclear space of photopystem I (PS I) of Synechocystis sp. strain PCC 6803 both in the ground state and in the one-exciton manifold. Fourier transform of transient decay curves shows several low frequency peaks. The most prominent Power Spectral Density (PSD) peaks are at omega = 49 cm(-1) and omega = 88 cm(-1). The peculiarity of the coherent wavepacket in the PS I of S. sp. strain PCC 6803 is the unique, long-lived 49 cm(-1) and 88 cm(-1) oscillations with decay times up to 10 ps. It was suggested that such a long-lived coherence is determined by a contribution of the ground state wavepacket. The dependence of these two PSD peaks on the probe wavelength resembles the profile of the transient absorption spectra of PS I. The pump-probe signal in the Soret region reflects the dynamics of the ground state wavepacket created by pulsed excitation of the Q(y)-band. It was shown that the multimode Brownian oscillator model allows a quantitative fit of the oscillatory patterns of the pump-probe signal to be obtained.
Collapse
Affiliation(s)
- Oleg M Sarkisov
- N N Semenov Institute of Chemical Physics, Russian Academy of Sciences, Kosigin str 4, Moscow, Russia
| | | | | | | | | | | | | | | |
Collapse
|
45
|
van Grondelle R, Novoderezhkin VI. Energy transfer in photosynthesis: experimental insights and quantitative models. Phys Chem Chem Phys 2005; 8:793-807. [PMID: 16482320 DOI: 10.1039/b514032c] [Citation(s) in RCA: 380] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We overview experimental and theoretical studies of energy transfer in the photosynthetic light-harvesting complexes LH1, LH2, and LHCII performed during the past decade since the discovery of high-resolution structure of these complexes. Experimental findings obtained with various spectroscopic techniques makes possible a modelling of the excitation dynamics at a quantitative level. The modified Redfield theory allows a precise assignment of the energy transfer pathways together with a direct visualization of the whole excitation dynamics where various regimes from a coherent motion of delocalized exciton to a hopping of localized excitations are superimposed. In a single complex it is possible to observe the switching between these regimes driven by slow conformational motion (as we demonstrate for LH2). Excitation dynamics under quenched conditions in higher-plant complexes is discussed.
Collapse
Affiliation(s)
- Rienk van Grondelle
- Department of Biophysics, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands.
| | | |
Collapse
|
46
|
Scanning tunneling microscopy investigation of nanostructures produced by Ar[sup +] and He[sup +] bombardment of MoS[sub 2] surfaces. ACTA ACUST UNITED AC 2005. [DOI: 10.1116/1.1993622] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
47
|
Novoderezhkin VI, Palacios MA, van Amerongen H, van Grondelle R. Energy-Transfer Dynamics in the LHCII Complex of Higher Plants: Modified Redfield Approach. J Phys Chem B 2004. [DOI: 10.1021/jp0496001] [Citation(s) in RCA: 158] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Vladimir I. Novoderezhkin
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992, Moscow, Russia, Department of Biophysics, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands, and Laboratory of Biophysics, Department of Agrotechnology and Food Sciences, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands
| | - Miguel A. Palacios
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992, Moscow, Russia, Department of Biophysics, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands, and Laboratory of Biophysics, Department of Agrotechnology and Food Sciences, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands
| | - Herbert van Amerongen
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992, Moscow, Russia, Department of Biophysics, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands, and Laboratory of Biophysics, Department of Agrotechnology and Food Sciences, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands
| | - Rienk van Grondelle
- A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Leninskie Gory, 119992, Moscow, Russia, Department of Biophysics, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081 HV Amsterdam, The Netherlands, and Laboratory of Biophysics, Department of Agrotechnology and Food Sciences, Wageningen University, Dreijenlaan 3, 6703 HA Wageningen, The Netherlands
| |
Collapse
|
48
|
Prall BS, Parkinson DY, Fleming GR, Yang M, Ishikawa N. Two-dimensional optical spectroscopy: Two-color photon echoes of electronically coupled phthalocyanine dimers. J Chem Phys 2004; 120:2537-40. [PMID: 15268397 DOI: 10.1063/1.1644794] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023] Open
Abstract
Two-color photon echo peak shift spectroscopy was used to study electronic coupling in a phthalocyanine homodimer. Two optical parametric amplifiers were used to produce pulses to excite the split lower states of LuPc2-. The existence of a two-color peak shift indicates the existence of correlation between these two dipole-allowed states. The nature of this correlation is discussed based on theoretical predictions of the interactions between exciton and charge resonance states.
Collapse
Affiliation(s)
- Bradley S Prall
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | | | | | | | | |
Collapse
|
49
|
|
50
|
Neuweiler H, Schulz A, Böhmer M, Enderlein J, Sauer M. Measurement of submicrosecond intramolecular contact formation in peptides at the single-molecule level. J Am Chem Soc 2003; 125:5324-30. [PMID: 12720444 DOI: 10.1021/ja034040p] [Citation(s) in RCA: 119] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We describe a single-molecule-sensitive method to determine the rate of contact formation and dissociation between tryptophan and an oxazine derivative (MR121) on the basis of measurements of the photon distance distribution. Two short peptides (15 and 20 amino acids) derived from the transactivation domain of the human oncoprotein p53 were investigated. With the fluorophore attached at the N-terminal end of the flexible peptides, fluorescence of the dye is efficiently quenched upon contact formation with a tryptophan residue. The mechanism responsible for the efficient fluorescence quenching observed in the complexes is assumed to be a photoinduced electron-transfer reaction occurring predominantly at van der Waals contact. Fluorescence fluctuations caused by intramolecular contact formation and dissociation were recorded using confocal fluorescence microscopy with two avalanche photodiodes and the time-correlated single-photon-counting technique, enabling a temporal resolution of 1.2 ns. Peptides containing a tryptophan residue at positions 9 and 8, respectively, show contact formation with rate constants of 1/120 and 1/152 ns(-1), respectively. Whereas the rate constants of contact formation most likely directly report on biopolymer chain mobility, the dissociation rate constants of 1/267 and 1/742 ns(-1), respectively, are significantly smaller and reflect strong hydrophobic interactions between the dye and tryptophan. Fluorescence experiments on point-mutated peptides where tryptophan is exchanged by phenylalanine show no fluorescence quenching.
Collapse
Affiliation(s)
- Hannes Neuweiler
- Physikalisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 253, 69120 Heidelberg, Germany
| | | | | | | | | |
Collapse
|