A novel ecological role of the Firmicutes identified in thermophilic microbial fuel cells

Exploring the antibiotic resistance genes removal dynamics in chicken manure by composting

Prolonged antibiotic usage in livestock farming leads to the accumulation of antibiotic resistance genes in animal manure. Composting has been shown as an effective way of removing antibiotic resistance from manures, but the specific mechanisms remain unclear. This study used time-series sampling and metagenomics to analyse the resistome types and their bacterial hosts in chicken manures. Composting significantly altered the physicochemical properties and microbiome composition, reduced antibiotic resistance genes by 65.71 %, mobile genetic elements by 68.15 % and horizontal gene transfer frequency. Source tracking revealed that Firmicutes, Actinobacteria, and Proteobacteria are the major bacterial hosts involved in the resistome and gene transfer events. Composting reduces the resistome risk by targeting pathogens such as Staphylococcus aureus. Structural equation modelling confirmed that composting reduces resistome risk by changing pH and pathogen abundance. This study demonstrates that composting is an effective strategy for mitigating resistome risk in chicken manure, thereby supporting the One Health initiative.

Batch and semi-continuous treatment of cassava wastewater using microbial fuel cells and metataxonomic analysis

The treatment of agroindustrial wastewater using microbial fuel cells (MFCs) is a technological strategy to harness its chemical energy while simultaneously purifying the water. This manuscript investigates the organic load effect as chemical oxygen demand (COD) on the production of electricity during the treatment of cassava wastewater by means of a dual-chamber microbial fuel cell in batch mode. Additionally, specific conditions were selected to evaluate the semi-continuous operational mode. The dynamics of microbial communities on the graphite anode were also investigated. The maximum power density delivered by the batch MFC (656.4 μW m- 2 ) was achieved at the highest evaluated organic load (6.8 g COD L- 1 ). Similarly, the largest COD removal efficiency (61.9%) was reached at the lowest organic load (1.17 g COD L- 1 ). Cyanide degradation percentages (50-70%) were achieved across treatments. The semi-continuous operation of the MFC for 2 months revealed that the voltage across the cell is dependent on the supply or suspension of the organic load feed. The electrode polarization resistance was observed to decreases over time, possibly due to the enrichment of the anode with electrogenic microbial communities. A metataxonomic analysis revealed a significant increase in bacteria from the phylum Firmicutes, primarily of the genus Enterococcus.

Development of bioanodes rich in exoelectrogenic bacteria using iron-rich palaeomarine sediment inoculum

Microbial Fuel Cells (MFC) convert energy stored in chemicals into electrical energy thanks to exoelectrogenic microorganisms who also play a crucial role in geochemical cycles in their natural environment, including that of iron. In this study, we investigated paleomarine sediments as inoculum for bioanode development in MFCs. These sediments were formed under anoxic conditions ca. 113 million years ago and are rich in clay minerals, organic matter, and iron. The marlstone inoculum was incubated in the anolyte of an MFC using acetate as the added electron donor and ferricyanide as the electron acceptor in the catholyte. After seven weeks of incubation, the current density increased to 0.15 mA.cm-2 and a stable + 700 mV open circuit potential was reached. Community analysis revealed the presence of two exoelectrogenic bacterial genera, Geovibrio and Geobacter. Development of electroactive biofilms was correlated to bulk chemical transformations of the sediment inoculum with an increase in the Fe(II) to Fetotal ratio. Comparisons to sediments sterilized prior to inoculation confirmed that bioanode development derives from the native microbiota of these paleomarine sediments. This study illustrates the feasibility of developing exoelectrogenic biofilms from iron-rich marlstone and has implications for the role of such bacteria in broader paleoenvironmental phenomena.

Optimizing electrochemically active microorganisms as a key player in the bioelectrochemical system: Identification methods and pathways to large-scale implementation

The rapid global economic growth driven by industrialization and population expansion has resulted in significant issues, including reliance on fossil fuels, energy scarcity, water crises, and environmental emissions. To address these issues, bioelectrochemical systems (BES) have emerged as a dual-purpose solution, harnessing electrochemical processes and the capabilities of electrochemically active microorganisms (EAM) to simultaneously recover energy and treat wastewater. This review examines critical performance factors in BES, including inoculum selection, pretreatment methods, electrodes, and operational conditions. Further, authors explore innovative approaches to suppress methanogens and simultaneously enhance the EAM in mixed cultures. Additionally, advanced techniques for detecting EAM are discussed. The rapid detection of EAM facilitates the selection of suitable inoculum sources and optimization of enrichment strategies in BESs. This optimization is essential for facilitating the successful scaling up of BES applications, contributing substantially to the realization of clean energy and sustainable wastewater treatment. This analysis introduces a novel viewpoint by amalgamating contemporary research on the selective enrichment of EAM in mixed cultures. It encompasses identification and detection techniques, along with methodologies tailored for the selective enrichment of EAM, geared explicitly toward upscaling applications in BES.

Performance analysis of microbial fuel cell - membrane bioreactor with reduced graphene oxide enhanced polypyrrole conductive ceramic membrane: Wastewater treatment, membrane fouling and microbial community under high salinity

The application of membrane bioreactor (MBR) in high salinity wastewater treatment was mainly hindered by membrane fouling. Microbial fuel cell (MFC)-MBR coupling system was established to alleviate membrane fouling and save energy. Reduced graphene oxide/polypyrrole ceramic membrane (rGO/PPy CM) with high conductivity and stability was innovatively placed in MFC-MBRs as both cathode and filter, with PPy CM, rGO/PPy CM and CM placed in other reactors. MFC-MBR (rGO/PPy) and MFC-MBR (PPy) achieved higher pollutant removal efficiencies (90.73 % and 90.45 % for TOC, 87.22 % and 86.56 % for NH4+-N, respectively) and superior anti-fouling performance (1.86 and 1.93 kPa/d for average membrane fouling rates) than both conventional MBRs (CMBRs). The stable voltage generation was around 287 and 242 mV, respectively. Through high throughput sequencing, electric field showed a positive correlation with the abundance and activity of most dominant phylum (Bacteroidetes, Chloroflexi, Actinobacteria, and Firmicutes) and functional genes (amoA, hao, narG, napA, nirK, norB, and nosZ), thereby improving pollutant removal efficiency. The higher conductivity of rGO/PPy CM resulted in enhanced electric field intensity, leading to superior performance of anti-fouling and pollutant removal. This study inventively explored the effects of conductive membrane property on electricity generation performance, microbial community, pollutant removal and membrane fouling, providing theoretical support for the selection of electrode materials in MFC-MBR.

Recent progress in the characterization and application of exo-electrogenic microorganisms

Exo-electrogenic microorganisms are characterized by their special metabolic capability of transferring metabolic electrons out of their cell, into insoluble external electron acceptors such as iron or manganese oxides and electrodes, or vice versa take up electron from electrodes. Their conventional application is primarily limited to microbial fuel cells for electrical power generation and microbial electrolysis cells for the production of value-added products such as biohydrogen, biomethane and hydrogen peroxide. The utility of exo-electrogenic organisms has expanded into many other applications in recent times. Such examples include microbial desalination cells, microbial electro-synthesis cells producing value-added chemicals such as bio-butanol and their applications in other carbon sequestration technologies. Additionally, electrochemically-active organisms are now beginning to be employed in biosensor applications for environmental monitoring. Additionally, the utility of biocathodes in bio-electrochemical systems is also a novel application in catalyzing the cathodic oxygen reduction reaction to enhance their electrochemical performance. Advances have also been made in the expansion and use of other organisms such as the usage of photosynthetic microorganisms for the fabrication of self-sustained bio-electrochemical systems. This review attempts to provide a comprehensive picture of the state-of the art of exo-electrogenic organisms and their novel utility in bioelectrochemical systems.

Effects of chemical oxygen demand/nitrogen on electrochemical performances and denitrification efficiency in single-chamber microbial fuel cells: Insights from electron transfer and bacterial communities

The electrochemical performances and denitrification efficiency of microbial fuel cells (MFCs) are often limited by chemical oxygen demand/nitrogen (COD/N) of wastewater. To overcome this limitation, single-chamber air cathode MFCs with varying COD/N (16/1, 8/1, and 4/1) were established to investigate their electrochemical performances, denitrification efficiency, and bacterial communities. The optimal COD/N for maximizing electricity generation and denitrification efficiency was 8/1, as supported by the greatest corrected coulomb efficiency (13.6%) and electron transfer rate (2.36 C/h for electricity generation, 39.77 C/h for denitrification). As COD/N decreased, the electrochemically active genus Geobacter was replaced by the denitrifying genera Un._f_Burkholderiaceae, Dechlorosoma, and Petrimonas. These results indicated that the efficiency of electricity generation and denitrification was not solely determined by the abundance of electrochemically active and denitrifying bacteria. The presence of a faster electron transfer pathway, possibly direct interspecies electron transfer, enhanced simultaneous electricity generation and denitrification in MFCs with COD/N of 8/1.

Ammonia recovery from organic nitrogen in synthetic dairy manure with a microbial fuel cell

Increasing pressures on the animal and cropland agriculture sectors have led to the realization of problems with animal waste management and ammonia-based fertilizer supply. Bioelectrochemical systems (BES) are a new-age technology that offer a way to address these problems. Microbial fuel cells (MFCs), one type of BES, are traditionally used for electricity generation from microbial degradation of organic matters, but can also be used to recover nutrients from wastes simultaneous with treatment. This research investigated an MFC for ammonia recovery from the organic nitrogen (orgN) fraction of synthetic dairy manure, using the simple amino acid glycine as the orgN source. We used five different synthetic manure compositions to determine their effects on MFC performance, and found minimal sacrifices in performance under orgN conditions when compared to the base condition without orgN. The MFC achieved greater than 90% COD removal in all orgN conditions. Nitrogen (N) removal efficiencies of between 40% and 60% were achieved in orgN conditions, indicating that organic nitrogen can be used as the substrate for ammonia mineralization and further recovery as fertilizer. In addition, we found the MFC was largely populated by electrogenic organisms from the phyla Bacteroidota, Firmicutes, Proteobacteria, and Halobacterota, with organisms in both Bacteroidota and Firmicutes capable of N mineralization present. Lastly, we found that in conditions where orgN is scarce and the only N source provided, microbes preferentially degraded organic matter from other dead organisms, especially as an N source. This increases the concentration of N in the MFC system and introduces important operational constraints for MFCs operated for ammonia recovery from orgN.

Prokaryotic Life Associated with Coal-Fire Gas Vents Revealed by Metagenomics

The natural combustion of underground coal seams leads to the formation of gas, which contains molecular hydrogen and carbon monoxide. In places where hot coal gases are released to the surface, specific thermal ecosystems are formed. Here, 16S rRNA gene profiling and shotgun metagenome sequencing were employed to characterize the taxonomic diversity and genetic potential of prokaryotic communities of the near-surface ground layer near hot gas vents in an open quarry heated by a subsurface coal fire. The communities were dominated by only a few groups of spore-forming Firmicutes, namely the aerobic heterotroph Candidatus Carbobacillus altaicus, the aerobic chemolitoautotrophs Kyrpidia tusciae and Hydrogenibacillus schlegelii, and the anaerobic chemolithoautotroph Brockia lithotrophica. Genome analysis predicted that these species can obtain energy from the oxidation of hydrogen and/or carbon monoxide in coal gases. We assembled the first complete closed genome of a member of uncultured class-level division DTU015 in the phylum Firmicutes. This bacterium, 'Candidatus Fermentithermobacillus carboniphilus' Bu02, was predicted to be rod-shaped and capable of flagellar motility and sporulation. Genome analysis showed the absence of aerobic and anaerobic respiration and suggested chemoheterotrophic lifestyle with the ability to ferment peptides, amino acids, N-acetylglucosamine, and tricarboxylic acid cycle intermediates. Bu02 bacterium probably plays the role of a scavenger, performing the fermentation of organics formed by autotrophic Firmicutes supported by coal gases. A comparative genome analysis of the DTU015 division revealed that most of its members have a similar lifestyle.

Graphene oxide addition to anaerobic digestion of waste activated sludge: Impact on methane production and removal of emerging contaminants

The effect of graphene oxide on the anaerobic digestion of waste activated sludge was investigated at two graphene oxide concentrations (0.025 and 0.075 g graphene oxide per g volatile solids) using biochemical methane potential tests. The occurrence of 36 pharmaceuticals was monitored in the solid and liquid phases before and after the anaerobic treatment. The addition of graphene oxide improved the removal of most pharmaceuticals detected, even those that are considered persistent to biological degradation, such as azithromycin, carbamazepine, and diclofenac. No significant differences were observed in the final specific methane production without graphene oxide and with the lowest graphene oxide concentration, yet the highest graphene oxide concentration partially inhibited methane production. The relative abundance of antibiotic resistance genes was not affected by the graphene oxide addition. Finally, significant changes in the microbial community including bacteria and archaea were detected with graphene oxide addition.

Simultaneous removal of nitrate and ammonium by hydrogen-based partial denitrification coupled with anammox in a membrane biofilm reactor

Hydrogen-based membrane biofilm reactors (MBfRs) are effective for nitrogen removal. However, the safety of hydrogen limited the application of MBfR. Here, a hydrogen-based partial denitrification system coupled with anammox (H₂-PDA) was constructed in an MBfR for reducing hydrogen demand significantly. The metabolomics and structures of microbial communities were analyzed to determine the phenotypic differences and drivers underlying denitrification, anammox, and H₂-PDA. These findings indicated that total nitrogen (TN) removal increased from 57.1% in S1 to 93.7% in S2. During the H₂-PDA process, partial denitrification and anammox contributed to TN removal by 93.7% and 6.3%, respectively. Community analysis indicated that the H₂-PDA system was dominated by the genus Meiothermus, which is involved in partial denitrification. Collectively, these findings confirmed the feasibility of incorporating the H₂-PDA process in a MBfR and form a foundation for the establishment of novel and practical methods for efficient nitrogen removal.

Bacillales: From Taxonomy to Biotechnological and Industrial Perspectives

For a long time, the genus Bacillus has been known and considered among the most applicable genera in several fields. Recent taxonomical developments resulted in the identification of more species in Bacillus-related genera, particularly in the order Bacillales (earlier heterotypic synonym: Caryophanales), with potential application for biotechnological and industrial purposes such as biofuels, bioactive agents, biopolymers, and enzymes. Therefore, a thorough understanding of the taxonomy, growth requirements and physiology, genomics, and metabolic pathways in the highly diverse bacterial order, Bacillales, will facilitate a more robust designing and sustainable production of strain lines relevant to a circular economy. This paper is focused principally on less-known genera and their potential in the order Bacillales for promising applications in the industry and addresses the taxonomical complexities of this order. Moreover, it emphasizes the biotechnological usage of some engineered strains of the order Bacillales. The elucidation of novel taxa, their metabolic pathways, and growth conditions would make it possible to drive industrial processes toward an upgraded functionality based on the microbial nature.

Biodegradation of synthetic estrogen using bioelectrochemical system and degradation pathway analysis through Quadrupole-time-of-flight-mass spectrometry

Synthetic estrogenic compounds such as 17α-ethinylestradiol (EE2) are significant environmental contaminants. This research studied the biodegradation of EE2 utilizing the EE2 adapted cells isolated from a dairy farm waste site in suspension flask vis-a-vis Bioelectrochemical System (BES) and compared the power output in the BES with and without EE2 as a co-substrate. 78% removal of EE2 was observed in the BES as against 60% removal in suspension flasks. The maximum power density in the BES increased about 53% when EE2 is used as a co-substrate. The EE2 biodegradation studied using HPLC and Q-TOF methods, also proposes a hypothetical pathway for EE2 degradation by the newly isolated strain Rhodopseudomonas palustris MDOC01 and reports the significant metabolites like nicotinic acid and oxoproline being detected during bioelectrochemical treatment process of EE2. Study also suggests that Plasma peroxide treatment of anode material enhanced the overall performance in terms of biodegradation efficiency and power output.

The enhancement of microbial fuel cell performance by anodic bacterial community adaptation and cathodic mixed nickel–copper oxides on a graphene electrocatalyst

Background

Although microbial fuel cells (MFCs) represent a promising technology for capturing renewable energy from wastewater, their scaling-up is significantly limited by a slow-rate cathodic oxygen reduction reaction (ORR) and the development of a resilient anodic microbial community. In this study, mixed transition metal oxides of nickel and copper (Ni and Cu), supported on a graphene (G) (NiO–CuO/G) electrocatalyst, were synthesized and tested as a cost-effective cathode for ORR in MFCs. Electrochemical measurements of electrocatalyst were conducted using a rotating disk electrode (RDE) and linear sweep voltammetry (LSV) in a neutral electrolyte, and compared with a benchmark Pt/C catalyst. Furthermore, the long-term performance of the as-synthesized electrocatalyst was evaluated in a single-chamber MFC by measuring organic matter removal and polarization behavior. The successful enrichment of electroactive biofilm was also monitored using transmission electron microscopy and the Vitek2 compact system technique.

Results

When compared with the benchmark platinum cathode, the NiO–CuO/G electrocatalyst exhibited high selectivity toward ORR. The rotating disk electrode (RDE) experiments reveal that ORR proceeds via a 4-electron ORR mechanism. Furthermore, the NiO–CuO/G electrocatalyst also exhibited a high power density of 21.25 mW m−2 in an air-cathode MFC, which was slightly lower than that of Pt/C-based MFC (i.e., 50.4 mW m−2). Biochemical characterization of the most abundant bacteria on anodic biofilms identified four genera (i.e., Escherichia coli, Shewanella putrefaciens, Bacillus cereus, and Bacillus Thuringiensis/mycoides) that belonged to Gammaproteobacteria, and Firmicutesphyla.

Conclusions

This study demonstrates that the NiO–CuO/G cathode had an enhanced electrocatalytic activity toward ORR in a pH-neutral solution. This novel mixed transition metal oxide electrocatalyst could replace expensive Pt-based catalysts for MFC applications.

How bacteria use electric fields to reach surfaces

Electrotaxis is the property of cells to sense electric fields and use them to orient their displacement. This property has been widely investigated with eukaryotic cells but it remains unclear whether or not bacterial cells can sense an electric field. Here, a specific experimental set-up was designed to form microbial electroactive biofilms while differentiating the effect of the electric field from that of the polarised electrode surface. Application of an electric field during exposure of the electrodes to the inoculum was shown to be required for an electroactive biofilm to form afterwards. Similar biofilms were formed in both directions of the electric field. This result is attributed to the capacity of the cells to detect the K+ and Na+ ion gradients that the electric field creates at the electrode surface. This microbial property should now be considered as a key factor in the formation of electroactive biofilms and possible implications in the biomedical domain are discussed.

Inhibition of AHL-mediated quorum sensing to control biofilm thickness in microbial fuel cell by using Rhodococcus sp. BH4

Anode biofilm thickness is a key point for high and sustainable power generation in microbial fuel cells (MFCs). Over time, the formation of a thicker biofilm on anode electrode hinders the power generation performance of MFC by causing a longer electron transfer path and the accumulation of undesirable components in anode biofilm. To overcome these limitations, we used a novel strategy named quorum quenching (QQ) for the first time in order to control the biofilm thickness on the anode surface by inactivation of signal molecules among microorganisms. For this purpose, the isolated QQ bacteria (Rhodococcus sp. BH4) were immobilized into alginate beads (20, 40, and 80 mg/10 ml sodium alginate) and added to the anode chamber of MFCs. The MFC exhibited the best electrochemical activity (1924 mW m^-2) with a biofilm thickness of 26 μm at 40 mg Rhodococcus sp. BH4/10 ml sodium alginate. The inhibition of signal molecules in anode chamber reduced the production of extracellular polymeric substance (EPS) by preventing microbial communication amonganode microorganisms. Microscopic observations revealed that anode biofilm thickness and the abundance of dead bacteria significantly decreased with an increase in Rhodococcus sp. BH4 concentration in MFCs. Microbiome diversity showed an apparent difference among the microbial community structures of anode biofilms in MFCs containing vacant and Rhodococcus sp. BH4 beads. The data revealed that the QQ strategy is an efficient application for improving MFC performance and may shed light on future studies.

Thermosynergistes pyruvativorans gen. nov., sp. nov., an anaerobic, pyruvate-degrading bacterium from Shengli oilfield, and proposal of Thermosynergistaceae fam. nov. in the phylum Synergistetes

A strictly anaerobic, thermophilic, Gram-stain-negative bacterium, named as strain S15^T, was isolated from oily sludge of Shengli oilfield in PR China. Cells of strain S15^T were straight or slightly curved rods with 0.4-0.8 µm width × 1.4-3 µm length and occurred mostly in pairs or short chains. Endospore-formation was not observed. The strain grew optimally at 55 °C (range from 30-65 °C), pH 6.5 (pH 6.0-8.5) and 0-30 g l^-1 NaCl (optimum with 10 g l^-1 NaCl). Yeast extract was an essential growth factor for strain S15^T. The major cellular fatty acid was iso-C_15 : 0 (58.2 %), and the main polar lipids were amino phospholipid (APL), glycolipids (GLs) and phosphatidylethanolamine (PE). The G+C content of DNA of strain S15^T was 52.2 mol%. Strain S15^T shared 89.8 % 16S rRNA gene similarity with the most related organism Acetomicrobium hydrogeniformans DSM 22491^T in the phylum Synergistetes. The paired genomic average amino acid identity (AAI) and percentage of conserved proteins (POCP) values showed relatedness of less than 58.0 and 39.7 % with type strains of the species in the phylum Synergistetes. On the basis of phenotypic, phylogenetic and phylogenomic evidences, strain S15^T constitutes a novel species in a novel genus, for the name Thermosynergistes pyruvativorans gen. nov., sp. nov. is proposed. The type strain is S15^T (=CCAM 583^T=JCM 33159^T). Thermosynergistaceae fam. nov. is also proposed.

Ferrimicrobium acidiphilum Exchanges Electrons With a Platinum Electrode via a Cytochrome With Reduced Absorbance Maxima at 448 and 605 nm

Ferrimicrobium acidiphilum is a Gram-positive member of the Actinobacteria phylum that can respire aerobically or anaerobically with soluble Fe(II) or Fe(III), respectively, in sulfuric acid at pH 1.5. Cyclic voltammetry measurements using intact F. acidiphilum at pH 1.5 produced fully reversible voltammograms that were highly reproducible. The maximum current observed with the anodic peak was considerably less than was the maximum current observed with the cathodic peak. This difference was attributed to the competition between the platinum electrode and the soluble oxygen for the available electrons that were introduced by the cathodic wave into this facultative aerobic organism. The standard reduction potential of the intact organism was determined to be 786 mV vs. the standard hydrogen electrode, slightly more positive than that of 735 mV that was determined for soluble iron at pH 1.5 using the same apparatus. Chronocoulometry measurements conducted at different cell densities revealed that the intact organism remained in close proximity to the working electrode during the measurement, whereas soluble ionic iron did not. When the cyclic voltammetry of intact F. acidiphilum was monitored using an integrating cavity absorption meter, the only small changes in absorbance that were detected were consistent with the participation of a cellular cytochrome with reduced absorbance peaks at 448 and 605 nm. The cytochrome that participated in the exchange of electrons between the intact organism and extracellular solid electrodes like platinum was the same cytochrome whose oxidation was previously shown to be rate-limiting when the organism respired aerobically on extracellular soluble iron.

Effects of green waste addition on waste activated sludge and fat, oil and grease co-digestion in mesophilic batch digester

Anaerobic digestion (AD) is regarded as an effective method to treat waste activated sludge (WAS) and fat, oil and grease (FOG). Co-digestion of WAS/FOG could promote the methane yield but it will cause acid and salinity inhibition. Green waste (GW) was added into the digesters, and its effects on co-digestion of WAS and FOG in the mesophilic batch digester were investigated. Digestive performances (such as hydrolysis, acidogenesis and methanogenesis) were studied emphatically. The results showed that digester L6 (WAS:FOG:GW = 1:2:1, VS basis) presented the highest specific methane yield (SMY, 341.5 mL/g VS). The results of kinetics study verified that there was a slower hydrolysis rate when GW was applied as a co-substrate, which could reduce the potential of acid inhibition. Volatile fatty acid (VFA) and electrical conductivity analysis showed that GW addition could keep moderate VFA concentrations and alleviate the negative effects of high-salinity substrates on the digestive systems. The microbial community and diversity analysis proved that GW addition was beneficial to keep the balance of hydrolytic bacteria, acidogens and acetogens. The results of this study indicated that GW addition could enhance the energy recovery and system stability in the WAS/FOG co-digestive system.

Augmenting the biodegradation of recalcitrant ethinylestradiol using Rhodopseudomonas palustris in a hybrid photo-assisted microbial fuel cell with enhanced bio-hydrogen production

This study presents the biodegradation potential of ethinylestradiol (EE2) in anaerobic environments using exoelectrogenic activity of Rhodopseudomonas palustris. EE2, a basic ingredient in oral contraceptives, is a significant estrogenic micropollutant in various wastewaters and is considered highly recalcitrant. This recalcitrance of EE2 has caused anoxic areas to become repositories for these pollutants. Thus, it is essential to find the microorganisms and suitable methods to degrade this compound. An initial EE2 concentration of 1 mg/L, used in an anaerobic photobioreactor, resulted in 70% EE2 degradation over a period of 16 days with an increase of 63% in hydrogen production when EE2 was used with glycerol as the main carbon source in the culture medium. Furthermore, in the novel setup of hybrid photo-assisted microbial fuel cell (h-PMFC) employed here, EE2 degradation enhanced to 89.82% with a maximum power density of 0.633 ± 0.04 mW/m². The hybrid MFC employed here could metabolize EE2 and sustained the bio-hydrogen production for 14 days to run the hydrogen fuel cell which otherwise could not be sustained with glycerol only and thus increased the overall power output. The current work highlights the use of R. palustris and the significance of co-metabolism in bioremediation of pollutants and bioenergy generation.

Crystalline iron oxides stimulate methanogenic benzoate degradation in marine sediment-derived enrichment cultures

Elevated dissolved iron concentrations in the methanic zone are typical geochemical signatures of rapidly accumulating marine sediments. These sediments are often characterized by co-burial of iron oxides with recalcitrant aromatic organic matter of terrigenous origin. Thus far, iron oxides are predicted to either impede organic matter degradation, aiding its preservation, or identified to enhance organic carbon oxidation via direct electron transfer. Here, we investigated the effect of various iron oxide phases with differing crystallinity (magnetite, hematite, and lepidocrocite) during microbial degradation of the aromatic model compound benzoate in methanic sediments. In slurry incubations with magnetite or hematite, concurrent iron reduction, and methanogenesis were stimulated during accelerated benzoate degradation with methanogenesis as the dominant electron sink. In contrast, with lepidocrocite, benzoate degradation, and methanogenesis were inhibited. These observations were reproducible in sediment-free enrichments, even after five successive transfers. Genes involved in the complete degradation of benzoate were identified in multiple metagenome assembled genomes. Four previously unknown benzoate degraders of the genera Thermincola (Peptococcaceae, Firmicutes), Dethiobacter (Syntrophomonadaceae, Firmicutes), Deltaproteobacteria bacteria SG8_13 (Desulfosarcinaceae, Deltaproteobacteria), and Melioribacter (Melioribacteraceae, Chlorobi) were identified from the marine sediment-derived enrichments. Scanning electron microscopy (SEM) and catalyzed reporter deposition fluorescence in situ hybridization (CARD-FISH) images showed the ability of microorganisms to colonize and concurrently reduce magnetite likely stimulated by the observed methanogenic benzoate degradation. These findings explain the possible contribution of organoclastic reduction of iron oxides to the elevated dissolved Fe²⁺ pool typically observed in methanic zones of rapidly accumulating coastal and continental margin sediments.

Characterization of a new electrochemically active bacterium phylogenetically related to Alicyclobacillus hesperidum and its electrochemical performance in microbial fuel cell

Extremophilic microorganisms in microbial electrochemical systems have opened new possibilities for waste treatment. Here, a phenomenon of electricity generation under acidophilic condition was found in organic acid fermentation wastewater treatment using microbial fuel cell (MFC). The anodic microbial community analysis showed that the percentage of Firmicutes was 99.03%, which accounted for the vast majority of the microbial community at the late discharge stage with pH 3.0. As the dominant bacterium of Firmicutes, Alicyclobacillus hesperidum EG was isolated and identified. MFC experiments confirmed that Alicyclobacillus hesperidum EG exhibited good electricity generating capability with a maximum power density of 188.1 mW m^-2 at 50 °C and low pH. It is the first time that Alicyclobacillus hesperidum EG was discovered as a newly electrochemically active bacterium. Additionally, the morphological analysis combined with electrochemical experiments demonstrated that no nanowires were found in the anodic biofilm of Alicyclobacillus hesperidum EG, and Alicyclobacillus hesperidum EG may produce soluble redox-active small molecules as electron shuttles to facilitate extracellular electron transfer. Based on unique characteristics such as good acid resistance, high temperature resistance, and high electricity generation ability, Alicyclobacillus hesperidum EG exhibited great potential in wastewater treatment and energy recovery.

Crossing the Wall: Characterization of the Multiheme Cytochromes Involved in the Extracellular Electron Transfer Pathway of Thermincola ferriacetica

Bioelectrochemical systems (BES) are emerging as a suite of versatile sustainable technologies to produce electricity and added-value compounds from renewable and carbon-neutral sources using electroactive organisms. The incomplete knowledge on the molecular processes that allow electroactive organisms to exchange electrons with electrodes has prevented their real-world implementation. In this manuscript we investigate the extracellular electron transfer processes performed by the thermophilic Gram-positive bacteria belonging to the Thermincola genus, which were found to produce higher levels of current and tolerate higher temperatures in BES than mesophilic Gram-negative bacteria. In our study, three multiheme c-type cytochromes, Tfer_0070, Tfer_0075, and Tfer_1887, proposed to be involved in the extracellular electron transfer pathway of T. ferriacetica, were cloned and over-expressed in E. coli. Tfer_0070 (ImdcA) and Tfer_1887 (PdcA) were purified and biochemically characterized. The electrochemical characterization of these proteins supports a pathway of extracellular electron transfer via these two proteins. By contrast, Tfer_0075 (CwcA) could not be stabilized in solution, in agreement with its proposed insertion in the peptidoglycan wall. However, based on the homology with the outer-membrane cytochrome OmcS, a structural model for CwcA was developed, providing a molecular perspective into the mechanisms of electron transfer across the peptidoglycan layer in Thermincola.

Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium

Biogenic transformation of Fe minerals, associated with extracellular electron transfer (EET), allows microorganisms to exploit high-potential refractory electron acceptors for energy generation. EET-capable thermophiles are dominated by hyperthermophilic archaea and Gram-positive bacteria. Information on their EET pathways is sparse. Here, we describe EET channels in the thermophilic Gram-positive bacterium Carboxydothermus ferrireducens that drive exoelectrogenesis and rapid conversion of amorphous mineral ferrihydrite to large magnetite crystals. Microscopic studies indicated biocontrolled formation of unusual formicary-like ultrastructure of the magnetite crystals and revealed active colonization of anodes in bioelectrochemical systems (BESs) by C. ferrireducens. The internal structure of micron-scale biogenic magnetite crystals is reported for the first time. Genome analysis and expression profiling revealed three constitutive c-type multiheme cytochromes involved in electron exchange with ferrihydrite or an anode, sharing insignificant homology with previously described EET-related cytochromes thus representing novel determinants of EET. Our studies identify these cytochromes as extracellular and reveal potentially novel mechanisms of cell-to-mineral interactions in thermal environments.

Microbial extracellular electron transfer and strategies for engineering electroactive microorganisms

Electroactive microorganisms (EAMs) are ubiquitous in nature and have attracted considerable attention as they can be used for energy recovery and environmental remediation via their extracellular electron transfer (EET) capabilities. Although the EET mechanisms of Shewanella and Geobacter have been rigorously investigated and are well characterized, much less is known about the EET mechanisms of other microorganisms. For EAMs, efficient EET is crucial for the sustainable economic development of bioelectrochemical systems (BESs). Currently, the low efficiency of EET remains a key factor in limiting the development of BESs. In this review, we focus on the EET mechanisms of different microorganisms, (i.e., bacteria, fungi, and archaea). In addition, we describe in detail three engineering strategies for improving the EET ability of EAMs: (1) enhancing transmembrane electron transport via cytochrome protein channels; (2) accelerating electron transport via electron shuttle synthesis and transmission; and (3) promoting the microbe-electrode interface reaction via regulating biofilm formation. At the end of this review, we look to the future, with an emphasis on the cross-disciplinary integration of systems biology and synthetic biology to build high-performance EAM systems.

Electroactivity across the cell wall of Gram-positive bacteria

The growing interest on sustainable biotechnological processes for the production of energy and industrial relevant organic compounds have increased the discovery of electroactive organisms (i.e. organisms that are able to exchange electrons with an electrode) and the characterization of their extracellular electron transfer mechanisms. While most of the knowledge on extracellular electron transfer processes came from studies on Gram-negative bacteria, less is known about the processes performed by Gram-positive bacteria. In contrast to Gram-negative bacteria, Gram-positive bacteria lack an outer-membrane and contain a thick cell wall, which were thought to prevent extracellular electron transfer. However, in the last decade, an increased number of Gram-positive bacteria have been found to perform extracellular electron transfer, and exchange electrons with an electrode. In this mini-review the current knowledge on the extracellular electron transfer processes performed by Gram-positive bacteria is introduced, emphasising their electroactive role in bioelectrochemical systems. Also, the existent information of the molecular processes by which these bacteria exchange electrons with an electrode is highlighted. This understanding is fundamental to advance the implementation of these organisms in sustainable biotechnological processes, either through modification of the systems or through genetic engineering, where the organisms can be optimized to become better catalysts.

Microbial community dynamics in phyto-thermotherapy baths viewed through next generation sequencing and metabolomics approach

Phyto-thermotherapy is a treatment consisting in immersing oneself in baths of self-heating alpine grass, to benefit of the heat and rich aromatic components released by the process. The aim of this study was to characterize the bacterial and fungal diversity of three phyto-thermal baths (PTB) performed in three different months, and to compare the data with the profile of the volatile organic compounds (VOCs) of the process. All the data collected showed that PTBs were structured in two stages: the first three days were characterised by an exponential rise of the temperature, a fast bacterial development, higher microbial diversity and higher concentrations of plant aliphatic hydrocarbons. The second stage was characterised by a stable high temperature, shrinkage of the microbial diversity with a predominance of few bacterial and fungi species and higher concentrations of volatiles of microbial origin. Erwinia was the dominant microbial species during the first stage and probably responsible of the self-heating process. In conclusion, PTBs has shown both similarities with common self-heating processes and important peculiarities such as the absence of pathogenic bacteria and the dominance of plant terpenoids with health characteristics among the VOCs confirming the evidence of beneficial effects in particular in the first three days.

Geobacter Autogenically Secretes Fulvic Acid to Facilitate the Dissimilated Iron Reduction and Vivianite Recovery

Biosynthetic organic matters, such as humus, play important roles in iron and phosphorus cycling in soil and aquatic systems. As an important member of humus, fulvic acid (FA) is ubiquitous in different environmental media, such as water, soil, and sediments. In this study, we fabricated the network among phosphate supply, metabolism pathway of FA, iron reduction, and vivianite recovery at the batch scale. Both the vivianite recovery performance and the content of biosynthetic FA were positively related to the phosphorus dosage. The highest vivianite formation efficiency of 53% was obtained in the Fe/P = 1 batch, accompanied with the maximal iron reduction rate of 2.29 mM·day^-1, which was 2.66 times higher than that of the Fe/P = 3 batch. Simultaneously, the highest content of FA was detected in extracellular polymeric substances (EPS) of the Fe/P = 1 batch. Metabolome analysis revealed that FA biosynthesis was mainly relevant to tricarboxylic acid (TCA) cycle, amino acid metabolism, and purine metabolism, with glutamate and aspartate as the precursors. Sufficient phosphate stimulated the FA biosynthesis by modulating the biosynthesis and transformation of glutamate and aspartate. After adding 10 mg L^-1 FA in Fe/P = 1 batch, the maximal iron reduction rate increase by 35%, as well as 12% improvement of the vivianite formation efficiency. Transcriptome revealed that FA promotes iron reduction and vivianite recovery by upregulating the expression of metal ion binding-, flagella-, and electron transfer activity-related genes.

Long-term performance and microbial community characteristics of pilot-scale anaerobic reactors for thermal hydrolyzed sludge digestion under mesophilic and thermophilic conditions

Anaerobic digestion (AD) with thermal hydrolysis pretreatment has been attracted widespread attention in recent years due to its high efficiency. However, few studies focus on systematical comparison of the downstream AD processes for thermal hydrolyzed sludge and their corresponding microbial community compositions, especially on those at pilot scale and above. Thus, this study systematically compared the long-term performance and microbial communities of two pilot-scale anaerobic reactors for thermal hydrolyzed sludge digestion under mesophilic and thermophilic conditions. The results presented that mesophilic anaerobic digestion (MAD) showed a better performance of methane production than thermophilic anaerobic digestion (TAD). The hydraulic retention time (HRT) needed to be longer than 12 days in MAD while 20 days in TAD to achieve the relatively high methane production, which could be explained by that the ammonia nitrogen accumulation especially the free ammonia determined in TAD was higher than that in MAD at all HRTs, emerging an inhibition of methane yield in TAD. High-throughput Illumina sequencing results demonstrated a more diverse microbial community in MAD than that in TAD. TAD was mediated by a suite of thermophiles, such as Coprothermobacter and Methanothermobacter, while taxa harbored in MAD mostly belonged to Bacteroidetes and relatively broad types of methanogens. In addition, hydrogenotrophic methanogens were the predominant of archaea communities in both digesters probably due to the relatively high concentration of ammonia nitrogen.

Hydrogen and Carbon Monoxide-Utilizing Kyrpidia spormannii Species From Pantelleria Island, Italy

Volcanic and geothermal areas are hot and often acidic environments that emit geothermal gasses, including H₂, CO and CO₂. Geothermal gasses mix with air, creating conditions where thermoacidophilic aerobic H₂- and CO-oxidizing microorganisms could thrive. Here, we describe the isolation of two Kyrpidia spormannii strains, which can grow autotrophically by oxidizing H₂ and CO with oxygen. These strains, FAVT5 and COOX1, were isolated from the geothermal soils of the Favara Grande on Pantelleria Island, Italy. Extended physiology studies were performed with K. spormannii FAVT5, and showed that this strain grows optimally at 55°C and pH 5.0. The highest growth rate is obtained using H₂ as energy source (μ_max 0.19 ± 0.02 h^–1, doubling time 3.6 h). K. spormannii FAVT5 can additionally grow on a variety of organic substrates, including some alcohols, volatile fatty acids and amino acids. The genome of each strain encodes for two O₂-tolerant hydrogenases belonging to [NiFe] group 2a hydrogenases and transcriptome studies using K. spormannii FAVT5 showed that both hydrogenases are expressed under H₂ limiting conditions. So far no Firmicutes except K. spormannii FAVT5 have been reported to exhibit a high affinity for H₂, with a K_s of 327 ± 24 nM. The genomes of each strain encode for one putative CO dehydrogenase, belonging to Form II aerobic CO dehydrogenases. The genomic potential and physiological properties of these Kyrpidia strains seem to be quite well adapted to thrive in the harsh environmental volcanic conditions.

Cultivating electroactive microbes-from field to bench

Electromicrobiology is an emerging field investigating and exploiting the interaction of microorganisms with insoluble electron donors or acceptors. Some of the most recently categorized electroactive microorganisms became of interest to sustainable bioengineering practices. However, laboratories worldwide typically maintain electroactive microorganisms on soluble substrates, which often leads to a decrease or loss of the ability to effectively exchange electrons with solid electrode surfaces. In order to develop future sustainable technologies, we cannot rely solely on existing lab-isolates. Therefore, we must develop isolation strategies for environmental strains with electroactive properties superior to strains in culture collections. In this article, we provide an overview of the studies that isolated or enriched electroactive microorganisms from the environment using an anode as the sole electron acceptor (electricity-generating microorganisms) or a cathode as the sole electron donor (electricity-consuming microorganisms). Next, we recommend a selective strategy for the isolation of electroactive microorganisms. Furthermore, we provide a practical guide for setting up electrochemical reactors and highlight crucial electrochemical techniques to determine electroactivity and the mode of electron transfer in novel organisms.

Combined freezing-thawing pretreatment and microbial electrolysis cell for enhancement of highly concentrated organics degradation from dewatered sludge

The influence of freezing-thawing (F/T) pretreatment on the degradation of highly concentrated organic matters from dewatered sludge (DS) in microbial electrolysis cell (MEC) was investigated in this study. Extended freezing disintegrated the DS matrix and resulted in accelerated hydrolysis rate. The biogas production and stabilization were increased due to the pretreatment by 25–70% of H₂ production rate and 17.8–33.8% of COD reduction rate, respectively. Fourier transform infrared spectroscopy analysis indicated that the pretreatment was unable to alter the bioelectrochemical reactions except for accelerating degradation rate. Excitation and emission matrix (EEM) spectra showed that aromatic protein and soluble microbial products (SMPs)-like materials in DS were increasingly solubilized by the pretreatment and significantly removed during electrogenesis. The F/T-pretreated DS favored the enrichment of exoelectrogens in MEC.

Anaerobic digestion of sludge filtrate assisted by symbionts of short chain fatty acid-oxidation syntrophs and exoelectrogens: Process performance, methane yield and microbial community

Sludge filtrate is a kind of special organic wastewater generated from hydrothermally pretreated sewage sludge. The efficient treatment of sludge filtrate can promote the development of sludge recycling technology. Herein, the anaerobic baffled reactor (ABR) assisted by symbionts of short chain fatty acid-oxidation syntrophs (SFAS) and exoelectrogens was applied to treat the sludge filtrate. The influence of fermentation temperature and promotion of methanogenesis via symbionts were focused. The results showed that the COD removal efficiency and methane yield of the ABR system assisted by symbionts at 35 °C (R3) were 11.7% and 11.0% higher than the one at 55 °C (R2), respectively. And the COD removal efficiency and methane yield of the R2 system were 9.1% and 12.9% higher than the traditional ABR system at 55 °C (R1), respectively. Large abundances of exoelectrogens such as Thermincola and Geobacter were found in the R2 and R3 systems, respectively. Moreover, ample Syntrophobacter, Syntrophomonas and Methanobacterium were detected in both R2 and R3 systems. The present research revealed the importance of SFAS, exoelectrogens and hydrogenotrophic methanogens for the improvement of methanogenesis. Besides, the mesophilic condition is conducive to enhancing the methanogenesis rate of sludge filtrate.

Enhanced hydrolysis and acidification of cellulose at high loading for methane production via anaerobic digestion supplemented with high mobility nanobubble water

In this study, CH₄ production from anaerobic digestion (AD) of refractory cellulose was investigated at a high loading of 3.5 (VS_cellulose/VS_inoculum) under nanobubble water (NBW) addition. A longer proton spin-spin relaxation time (2611-2906 ms) of NBW during 35 days' storage reflected its high mobility and diffusion of water molecules. Higher volatile fatty acids were yielded at the hydrolysis-acidification stage under NBW addition. Methanogenesis tests showed that Air-NBW and CO₂-NBW supplementation accelerated the utilization of crystalline cellulose, achieving methane yields of 264 and 246 mL CH₄/g-VS_reduced, increasing by 18% and 10% compared to deionized water addition (the control), respectively. In addition, under NBW addition the cellulose crystallinity reduction was enhanced by 14-20% with microbial community being enriched with hydrolytic and methanogenic bacteria. Results from this work suggest that NBW environment with no chemical addition and relatively low energy consumption is advantageous for enhanced AD process of cellulosic biomass.

Anaerobic and hydrogenogenic carbon monoxide-oxidizing prokaryotes: Versatile microbial conversion of a toxic gas into an available energy

Carbon monoxide (CO) is a gas that is toxic to various organisms including humans and even microbes; however, it has low redox potential, which can fuel certain microbes, namely, CO oxidizers. Hydrogenogenic CO oxidizers utilize an energy conservation system via a CO dehydrogenase/energy-converting hydrogenase complex to produce hydrogen gas, a zero emission fuel, by CO oxidation coupled with proton reduction. Biochemical and molecular biological studies using a few model organisms have revealed their enzymatic reactions and transcriptional response mechanisms using CO. Biotechnological studies for CO-dependent hydrogen production have also been carried out with these model organisms. In this chapter, we review recent advances in the studies of these microbes, which reveal their unique and versatile metabolic profiles and provides future perspectives on ecological roles and biotechnological applications. Over the past decade, the number of isolates has doubled (37 isolates in 5 phyla, 20 genera, and 32 species). Some of the recently isolated ones show broad specificity to electron acceptors. Moreover, accumulating genomic information predicts their unique physiologies and reveals their phylogenomic relationships with novel potential hydrogenogenic CO oxidizers. Combined with genomic database surveys, a molecular ecological study has unveiled the wide distribution and low abundance of these microbes. Finally, recent biotechnological applications of hydrogenogenic CO oxidizers have been achieved via diverse approaches (e.g., metabolic engineering and co-cultivation), and the identification of thermophilic facultative anaerobic CO oxidizers will promote industrial applications as oxygen-tolerant biocatalysts for efficient hydrogen production by genomic engineering.

Revegetation by sowing reduces soil bacterial and fungal diversity

AIM

The aim of this study was to understand the effects of revegetation on the diversity of bacteria and fungi in soil by sowing a single species and exploring the underlying mechanism.

LOCATION

Beijing, China.

TAXON

Plants and Microbes.

METHODS

In a short-term ecological restoration experiment, one natural recovery treatment and three seed sowing treatments were chosen to assess their effects on the alteration of fungal and bacterial diversity. Plant species richness, abundance, and height were investigated. The diversity of fungi and bacteria was analyzed by high-throughput sequencing technologies. Linear mixed-effects model analysis was used to examine the effects of different restoration methods on biodiversity and ecosystem functions. Pearson's correlation analysis, analysis of covariance, and structural equation modeling (SEM) were used to examine the relationship between biodiversity and environmental factors.

RESULTS

Species richness and the Shannon-Wiener Index (H') of plants in the sown treatments were lower than in the natural recovery treatment, especially with sowing of Medicago sativa L. Similarly, the sum of the observed species and H' of fungi and bacteria significantly decreased in the sown treatments. Moreover, plant density, community coverage, and soil moisture increased markedly, while soil bulk density decreased in the sown treatments. Importantly, SEM showed that sown treatments reduced the diversity of plants through increasing plant density, while it decreased the diversity of fungi and bacteria through decreasing the plant diversity and increasing soil moisture.

MAIN CONCLUSIONS

Our findings confirm that ecological restoration by sowing could improve soil conditions, but may be unfavorable to the amelioration of soil microbial diversity in the short-term. Restoration practitioners should consider long-term studies on the dynamics of biodiversity in the above- and belowground after revegetation by native species to achieve goals related to biodiversity conservation.

Production of Current by Syntrophy Between Exoelectrogenic and Fermentative Hyperthermophilic Microorganisms in Heterotrophic Biofilm from a Deep-Sea Hydrothermal Chimney

To study the role of exoelectrogens within the trophic network of deep-sea hydrothermal vents, we performed successive subcultures of a hyperthermophilic community from a hydrothermal chimney sample on a mix of electron donors in a microbial fuel cell system. Electrode (the electron acceptor) was swapped every week to enable fresh development from spent media as inoculum. The MFC at 80 °C yielded maximum current production increasing from 159 to 247 mA m^-2 over the subcultures. The experiments demonstrated direct production of electric current from acetate, pyruvate, and H₂ and indirect production from yeast extract and peptone through the production of H₂ and acetate from fermentation. The microorganisms found in on-electrode communities were mainly affiliated to exoelectrogenic Archaeoglobales and Thermococcales species, whereas in liquid media, the communities were mainly affiliated to fermentative Bacillales and Thermococcales species. The work shows interactions between fermentative microorganisms degrading complex organic matter into fermentation products that are then used by exoelectrogenic microorganisms oxidizing these reduced compounds while respiring on a conductive support. The results confirmed that with carbon cycling, the syntrophic relations between fermentative microorganisms and exoelectrogens could enable some microbes to survive as biofilm in extremely unstable conditions. Graphical Abstract Schematic representation of cross-feeding between fermentative and exoelectrogenic microbes on the surface of the conductive support. B, Bacillus/Geobacillus spp.; Tc, Thermococcales; Gg, Geoglobus spp.; Py, pyruvate; Ac, acetate.

Power production and microbial community composition in thermophilic acetate-fed up-flow and flow-through microbial fuel cells

The microbial communities developed from a mixed-species culture in up-flow and flow-through configurations of thermophilic (55 °C) microbial fuel cells (MFCs), and their power production from acetate, were investigated. The up-flow MFC was operated for 202 days, obtaining an average power density of 0.13 W/m³, and Tepidiphilus was the dominant transcriptionally-active microorganisms. The planktonic community developed in the up-flow MFC was used to inoculate a flow-through MFC resulting in the proliferation of Ureibacillus, whose relative abundance increased from 1 to 61% after 45 days. Despite the differences between the up-flow and flow-through MFCs, including the anode electrode, hydrodynamic conditions, and the predominant microorganism, similar (p = 0.05) volumetric power (0.11-0.13 W/m³), coulombic efficiency (16-18%) and acetate consumption rates (55-69 mg/L/d) were obtained from both. This suggests that though MFC design can shape the active component of the thermophilic microbial community, the consortia are resilient and can maintain similar performance in different MFC configurations.

Role of multiheme cytochromes involved in extracellular anaerobic respiration in bacteria

Heme containing proteins are involved in a broad range of cellular functions, from oxygen sensing and transport to catalyzing oxidoreductive reactions. The two major types of cytochrome (b-type and c-type) only differ in their mechanism of heme attachment, but this has major implications for their cellular roles in both localization and mechanism. The b-type cytochromes are commonly cytoplasmic, or are within the cytoplasmic membrane, while c-type cytochromes are always found outside of the cytoplasm. The mechanism of heme attachment allows for complex c-type multiheme complexes, having the capacity to hold multiple electrons, to be assembled. These are increasingly being identified as secreted into the extracellular environment. For organisms that respire using extracellular substrates, these large multiheme cytochromes allow for electron transfer networks from the cytoplasmic membrane to the cell exterior for the reduction of extracellular electron acceptors. In this review the structures and functions of these networks and the mechanisms by which electrons are transferred to extracellular substrates is described.

Dominance of electroactive microbiomes in bioelectrochemical remediation of hydrocarbon-contaminated soils with different textures

Bioelectrochemical systems (BESs) are known to enhance the remediation of hydrocarbon-contaminated soil and sediments compared with natural attenuation, and the primary mechanism has been assumed as anaerobic degradation facilitated by electroactive bacteria (EAB) using the electrode as electron acceptor. However, known EAB were rarely found on the anodes of reported BESs, which challenged the fundamental mechanism of BESs although significant current generation was always observed during degradation of these recalcitrant substrates. This study however found the abundant EAB Geobacter (∼27.3%) in the anodic biofilms, which confirmed the role of electroactive bio-anode on the conversion of hydrocarbons into the current for the enhancement of remediation. Widespread occurrence of aerobic hydrocarbon-degrading bacteria (HDB) (e.g. ∼24.0% Parvibaculum and ∼30.6% Pseudomonas) was observed in soils with limited dissolved oxygen (∼0.4 mg/L). The higher abundance of dehydrogenase genes was found in the anode biofilms than that in soils, indicating anodic microorganisms may be mainly responsible for the removal of intermediates of aerobic hydrocarbons degradation in soils. High water saturation level and sandy soil texture showed positive impacts on bioelectrochemical remediation, while clay soil and unsaturation condition pose challenges in mass transfers in the matrix. The reactor performance was consistent with the phylogenetic molecular ecological network (pMENs) analysis, which showed that sandy soil BESs had tighter microbial network interactions than clay soil reactors.

The rapid chemically induced corrosion of concrete sewers at high H2S concentration

Concrete corrosion in sewers is primarily caused by H₂S in sewer atmosphere. H₂S concentration can vary from several ppm to hundreds of ppm in real sewers. Our understanding of sewer corrosion has increased dramatically in recent years, however, there is limited knowledge of the concrete corrosion at high H₂S levels. This study examined the corrosion development in sewers with high H₂S concentrations. Fresh concrete coupons, manufactured according to sewer pipe standards, were exposed to corrosive conditions in a pilot-scale gravity sewer system with gaseous H₂S at 1100 ± 100 ppm. The corrosion process was continuously monitored by measuring the surface pH, corrosion product composition, corrosion loss and the microbial community. The surface pH of concrete was reduced from 10.5 ± 0.3 to 3.1 ± 0.5 within 20 days and this coincided with a rapid corrosion rate of 3.5 ± 0.3 mm year ^-1. Microbial community analysis based on 16S rRNA gene sequencing indicated the absence of sulfide-oxidizing microorganisms in the corrosion layer. The chemical analysis of corrosion products supported the reaction of cement with sulfuric acid formed by the chemical oxidation of H₂S. The rapid corrosion of concrete in the gravity pipe was confirmed to be caused by the chemical oxidation of hydrogen sulfide at high concentrations. This is in contrast to the conventional knowledge that is focused on microbially induced corrosion. This first-ever systematic investigation shows that chemically induced oxidation of H₂S leads to the rapid corrosion of new concrete sewers within a few weeks. These findings contribute novel understanding of in-sewer corrosion processes and hold profound implications for sewer operation and corrosion management.

How Thermophilic Gram-Positive Organisms Perform Extracellular Electron Transfer: Characterization of the Cell Surface Terminal Reductase OcwA

Thermophilic Gram-positive organisms were recently shown to be a promising class of organisms to be used in bioelectrochemical systems for the production of electrical energy. These organisms present a thick peptidoglycan layer that was thought to preclude them to perform extracellular electron transfer (i.e., exchange catabolic electrons with solid electron acceptors outside the cell). In this paper, we describe the structure and functional mechanisms of the multiheme cytochrome OcwA, the terminal reductase of the Gram-positive bacterium Thermincola potens JR found at the cell surface of this organism. The results presented here show that this protein can take the role of a respiratory “Swiss Army knife,” allowing this organism to grow in environments with soluble and insoluble substrates. Moreover, it is shown that it is unrelated to terminal reductases found at the cell surface of other electroactive organisms. Instead, OcwA is similar to terminal reductases of soluble electron acceptors. Our data reveal that terminal oxidoreductases of soluble and insoluble substrates are evolutionarily related, providing novel insights into the evolutionary pathway of multiheme cytochromes.

Extracellular electron transfer is the key process underpinning the development of bioelectrochemical systems for the production of energy or added-value compounds. Thermincola potens JR is a promising Gram-positive bacterium to be used in these systems because it is thermophilic. In this paper, we describe the structural and functional properties of the nonaheme cytochrome OcwA, which is the terminal reductase of this organism. The structure of OcwA, determined at 2.2-Å resolution, shows that the overall fold and organization of the hemes are not related to other metal reductases and instead are similar to those of multiheme cytochromes involved in the biogeochemical cycles of nitrogen and sulfur. We show that, in addition to solid electron acceptors, OcwA can also reduce soluble electron shuttles and oxyanions. These data reveal that OcwA can work as a multipurpose respiratory enzyme allowing this organism to grow in environments with rapidly changing availability of terminal electron acceptors without the need for transcriptional regulation and protein synthesis.

Extracellular electron transfer features of Gram-positive bacteria

Electroactive microorganisms possess the unique ability to transfer electrons to or from solid phase electron conductors, e.g., electrodes or minerals, through various physiological mechanisms. The processes are commonly known as extracellular electron transfer and broadly harnessed in microbial electrochemical systems, such as microbial biosensors, microbial electrosynthesis, or microbial fuel cells. Apart from a few model microorganisms, the nature of the microbe-electrode conductive interaction is poorly understood for most of the electroactive species. The interaction determines the efficiency and a potential scaling up of bioelectrochemical systems. Gram-positive bacteria generally have a thick electron non-conductive cell wall and are believed to exhibit weak extracellular electron shuttling activity. This review highlights reported research accomplishments on electroactive Gram-positive bacteria. The use of electron-conducting polymers as mediators is considered as one promising strategy to enhance the electron transfer efficiency up to application scale. In view of the recent progress in understanding the molecular aspects of the extracellular electron transfer mechanisms of Enterococcus faecalis, the electron transfer properties of this bacterium are especially focused on. Fundamental knowledge on the nature of microbial extracellular electron transfer and its possibilities can provide insight in interspecies electron transfer and biogeochemical cycling of elements in nature. Additionally, a comprehensive understanding of cell-electrode interactions may help in overcoming insufficient electron transfer and restricted operational performance of various bioelectrochemical systems and facilitate their practical applications.

Diversity and distribution of thermophilic hydrogenogenic carboxydotrophs revealed by microbial community analysis in sediments from multiple hydrothermal environments in Japan

In hydrothermal environments, carbon monoxide (CO) utilisation by thermophilic hydrogenogenic carboxydotrophs may play an important role in microbial ecology by reducing toxic levels of CO and providing H₂ for fuelling microbial communities. We evaluated thermophilic hydrogenogenic carboxydotrophs by microbial community analysis. First, we analysed the correlation between carbon monoxide dehydrogenase (CODH)–energy-converting hydrogenase (ECH) gene cluster and taxonomic affiliation by surveying an increasing genomic database. We identified 71 genome-encoded CODH–ECH gene clusters, including 46 whose owners were not reported as hydrogenogenic carboxydotrophs. We identified 13 phylotypes showing > 98.7% identity with these taxa as potential hydrogenogenic carboxydotrophs in hot springs. Of these, Firmicutes phylotypes such as Parageobacillus, Carboxydocella, Caldanaerobacter, and Carboxydothermus were found in different environmental conditions and distinct microbial communities. The relative abundance of the potential thermophilic hydrogenogenic carboxydotrophs was low. Most of them did not show any symbiotic networks with other microbes, implying that their metabolic activities might be low.

Thermophiles for biohydrogen production in microbial electrolytic cells

Thermophiles are promising options to use as electrocatalysts for bioelectrochemical applications including microbial electrolysis. They possess several interesting characteristics such as ability to catalyze a broad range of substrates at better rates and over a broad range of operating conditions, and better electrocatalysis/electrogenic activity over mesophiles. However, a very limited number of investigations have been carried out to explore the microbial reactions/pathways and the molecular mechanisms that contribute to better electrocatalysis/electrolysis in thermophiles. Here, we review the electroactive characteristics of thermophiles, their electron transfer mechanisms, and molecular insights behind the choice of thermophiles for bioelectrochemical/electrolytic processes.