1
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Kopsick JD, Kilgore JA, Adam GC, Ascoli GA. Formation and retrieval of cell assemblies in a biologically realistic spiking neural network model of area CA3 in the mouse hippocampus. J Comput Neurosci 2024; 52:303-321. [PMID: 39285088 PMCID: PMC11470887 DOI: 10.1007/s10827-024-00881-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2024] [Revised: 08/05/2024] [Accepted: 09/06/2024] [Indexed: 09/25/2024]
Abstract
The hippocampal formation is critical for episodic memory, with area Cornu Ammonis 3 (CA3) a necessary substrate for auto-associative pattern completion. Recent theoretical and experimental evidence suggests that the formation and retrieval of cell assemblies enable these functions. Yet, how cell assemblies are formed and retrieved in a full-scale spiking neural network (SNN) of CA3 that incorporates the observed diversity of neurons and connections within this circuit is not well understood. Here, we demonstrate that a data-driven SNN model quantitatively reflecting the neuron type-specific population sizes, intrinsic electrophysiology, connectivity statistics, synaptic signaling, and long-term plasticity of the mouse CA3 is capable of robust auto-association and pattern completion via cell assemblies. Our results show that a broad range of assembly sizes could successfully and systematically retrieve patterns from heavily incomplete or corrupted cues after a limited number of presentations. Furthermore, performance was robust with respect to partial overlap of assemblies through shared cells, substantially enhancing memory capacity. These novel findings provide computational evidence that the specific biological properties of the CA3 circuit produce an effective neural substrate for associative learning in the mammalian brain.
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Affiliation(s)
- Jeffrey D Kopsick
- Center for Neural Informatics, Structures, & Plasticity, College of Engineering and Computing, George Mason University, Fairfax, VA, USA
- Interdisciplinary Program in Neuroscience, College of Science, George Mason University, Fairfax, VA, USA
| | - Joseph A Kilgore
- Department of Electrical and Computer Engineering, George Washington University, Washington, D.C., USA
| | - Gina C Adam
- Department of Electrical and Computer Engineering, George Washington University, Washington, D.C., USA
| | - Giorgio A Ascoli
- Center for Neural Informatics, Structures, & Plasticity, College of Engineering and Computing, George Mason University, Fairfax, VA, USA.
- Interdisciplinary Program in Neuroscience, College of Science, George Mason University, Fairfax, VA, USA.
- Bioengineering Department, College of Engineering and Computing, George Mason University, Fairfax, VA, USA.
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2
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Breffle J, Germaine H, Shin JD, Jadhav SP, Miller P. Intrinsic dynamics of randomly clustered networks generate place fields and preplay of novel environments. eLife 2024; 13:RP93981. [PMID: 39422556 PMCID: PMC11488848 DOI: 10.7554/elife.93981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2024] Open
Abstract
During both sleep and awake immobility, hippocampal place cells reactivate time-compressed versions of sequences representing recently experienced trajectories in a phenomenon known as replay. Intriguingly, spontaneous sequences can also correspond to forthcoming trajectories in novel environments experienced later, in a phenomenon known as preplay. Here, we present a model showing that sequences of spikes correlated with the place fields underlying spatial trajectories in both previously experienced and future novel environments can arise spontaneously in neural circuits with random, clustered connectivity rather than pre-configured spatial maps. Moreover, the realistic place fields themselves arise in the circuit from minimal, landmark-based inputs. We find that preplay quality depends on the network's balance of cluster isolation and overlap, with optimal preplay occurring in small-world regimes of high clustering yet short path lengths. We validate the results of our model by applying the same place field and preplay analyses to previously published rat hippocampal place cell data. Our results show that clustered recurrent connectivity can generate spontaneous preplay and immediate replay of novel environments. These findings support a framework whereby novel sensory experiences become associated with preexisting "pluripotent" internal neural activity patterns.
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Affiliation(s)
- Jordan Breffle
- Neuroscience Program, Brandeis UniversityWalthamUnited States
| | - Hannah Germaine
- Neuroscience Program, Brandeis UniversityWalthamUnited States
| | - Justin D Shin
- Neuroscience Program, Brandeis UniversityWalthamUnited States
- Volen National Center for Complex Systems, Brandeis UniversityWalthamUnited States
- Department of Psychology , Brandeis UniversityWalthamUnited States
| | - Shantanu P Jadhav
- Neuroscience Program, Brandeis UniversityWalthamUnited States
- Volen National Center for Complex Systems, Brandeis UniversityWalthamUnited States
- Department of Psychology , Brandeis UniversityWalthamUnited States
| | - Paul Miller
- Neuroscience Program, Brandeis UniversityWalthamUnited States
- Volen National Center for Complex Systems, Brandeis UniversityWalthamUnited States
- Department of Biology, Brandeis UniversityWalthamUnited States
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3
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Li Y, Briguglio JJ, Romani S, Magee JC. Mechanisms of memory-supporting neuronal dynamics in hippocampal area CA3. Cell 2024:S0092-8674(24)01141-3. [PMID: 39454575 DOI: 10.1016/j.cell.2024.09.041] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 08/27/2024] [Accepted: 09/26/2024] [Indexed: 10/28/2024]
Abstract
Hippocampal CA3 is central to memory formation and retrieval. Although various network mechanisms have been proposed, direct evidence is lacking. Using intracellular Vm recordings and optogenetic manipulations in behaving mice, we found that CA3 place-field activity is produced by a symmetric form of behavioral timescale synaptic plasticity (BTSP) at recurrent synapses among CA3 pyramidal neurons but not at synapses from the dentate gyrus (DG). Additional manipulations revealed that excitatory input from the entorhinal cortex (EC) but not the DG was required to update place cell activity based on the animal's movement. These data were captured by a computational model that used BTSP and an external updating input to produce attractor dynamics under online learning conditions. Theoretical analyses further highlight the superior memory storage capacity of such networks, especially when dealing with correlated input patterns. This evidence elucidates the cellular and circuit mechanisms of learning and memory formation in the hippocampus.
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Affiliation(s)
- Yiding Li
- Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX 77030, USA
| | - John J Briguglio
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147, USA
| | - Sandro Romani
- Howard Hughes Medical Institute, Janelia Research Campus, Ashburn, VA 20147, USA.
| | - Jeffrey C Magee
- Howard Hughes Medical Institute, Baylor College of Medicine, Houston, TX 77030, USA.
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4
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Liao Z, Terada S, Raikov IG, Hadjiabadi D, Szoboszlay M, Soltesz I, Losonczy A. Inhibitory plasticity supports replay generalization in the hippocampus. Nat Neurosci 2024; 27:1987-1998. [PMID: 39227715 DOI: 10.1038/s41593-024-01745-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Accepted: 07/31/2024] [Indexed: 09/05/2024]
Abstract
Memory consolidation assimilates recent experiences into long-term memory. This process requires the replay of learned sequences, although the content of these sequences remains controversial. Recent work has shown that the statistics of replay deviate from those of experience: stimuli that are experientially salient may be either recruited or suppressed from sharp-wave ripples. In this study, we found that this phenomenon can be explained parsimoniously and biologically plausibly by a Hebbian spike-time-dependent plasticity rule at inhibitory synapses. Using models at three levels of abstraction-leaky integrate-and-fire, biophysically detailed and abstract binary-we show that this rule enables efficient generalization, and we make specific predictions about the consequences of intact and perturbed inhibitory dynamics for network dynamics and cognition. Finally, we use optogenetics to artificially implant non-generalizable representations into the network in awake behaving mice, and we find that these representations also accumulate inhibition during sharp-wave ripples, experimentally validating a major prediction of our model. Our work outlines a potential direct link between the synaptic and cognitive levels of memory consolidation, with implications for both normal learning and neurological disease.
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Affiliation(s)
- Zhenrui Liao
- Department of Neuroscience, Columbia University, New York, NY, USA.
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
- Center for Theoretical Neuroscience, Columbia University, New York, NY, USA.
- Department of Neuroscience, University of Edinburgh, Edinburgh, UK.
| | - Satoshi Terada
- Department of Neuroscience, Columbia University, New York, NY, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Ivan Georgiev Raikov
- Kavli Institute for Brain Science, Columbia University, New York, NY, USA
- Department of Bioengineering, Stanford University, Stanford, CA, USA
| | - Darian Hadjiabadi
- Kavli Institute for Brain Science, Columbia University, New York, NY, USA
- Department of Bioengineering, Stanford University, Stanford, CA, USA
| | - Miklos Szoboszlay
- Department of Neuroscience, Columbia University, New York, NY, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Ivan Soltesz
- Department of Bioengineering, Stanford University, Stanford, CA, USA.
- Department of Neurosurgery, Stanford University, Stanford, CA, USA.
| | - Attila Losonczy
- Department of Neuroscience, Columbia University, New York, NY, USA.
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
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5
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Gillett M, Brunel N. Dynamic control of sequential retrieval speed in networks with heterogeneous learning rules. eLife 2024; 12:RP88805. [PMID: 39197099 PMCID: PMC11357343 DOI: 10.7554/elife.88805] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/30/2024] Open
Abstract
Temporal rescaling of sequential neural activity has been observed in multiple brain areas during behaviors involving time estimation and motor execution at variable speeds. Temporally asymmetric Hebbian rules have been used in network models to learn and retrieve sequential activity, with characteristics that are qualitatively consistent with experimental observations. However, in these models sequential activity is retrieved at a fixed speed. Here, we investigate the effects of a heterogeneity of plasticity rules on network dynamics. In a model in which neurons differ by the degree of temporal symmetry of their plasticity rule, we find that retrieval speed can be controlled by varying external inputs to the network. Neurons with temporally symmetric plasticity rules act as brakes and tend to slow down the dynamics, while neurons with temporally asymmetric rules act as accelerators of the dynamics. We also find that such networks can naturally generate separate 'preparatory' and 'execution' activity patterns with appropriate external inputs.
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Affiliation(s)
- Maxwell Gillett
- Department of Neurobiology, Duke UniversityDurhamUnited States
| | - Nicolas Brunel
- Department of Neurobiology, Duke UniversityDurhamUnited States
- Department of Physics, Duke UniversityDurhamUnited States
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6
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Li M, Jiang YQ, Lee DK, Wang H, Lu MC, Sun Q. Dorsoventral Heterogeneity of Synaptic Connectivity in Hippocampal CA3 Pyramidal Neurons. J Neurosci 2024; 44:e0370242024. [PMID: 39025678 PMCID: PMC11326861 DOI: 10.1523/jneurosci.0370-24.2024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 06/11/2024] [Accepted: 07/12/2024] [Indexed: 07/20/2024] Open
Abstract
The hippocampal CA3 region plays an important role in learning and memory. CA3 pyramidal neurons (PNs) receive two prominent excitatory inputs-mossy fibers (MFs) from dentate gyrus (DG) and recurrent collaterals (RCs) from CA3 PNs-that play opposing roles in pattern separation and pattern completion, respectively. Although the dorsoventral heterogeneity of the hippocampal anatomy, physiology, and behavior has been well established, nothing is known about the dorsoventral heterogeneity of synaptic connectivity in CA3 PNs. In this study, we performed Timm's sulfide silver staining, dendritic and spine morphological analyses, and ex vivo electrophysiology in mice of both sexes to investigate the heterogeneity of MF and RC pathways along the CA3 dorsoventral axis. Our morphological analyses demonstrate that ventral CA3 (vCA3) PNs possess greater dendritic lengths and more complex dendritic arborization, compared with dorsal CA3 (dCA3) PNs. Moreover, using ChannelRhodopsin2 (ChR2)-assisted patch-clamp recording, we found that the ratio of the RC-to-MF excitatory drive onto CA3 PNs increases substantially from dCA3 to vCA3, with vCA3 PNs receiving significantly weaker MFs, but stronger RCs, excitation than dCA3 PNs. Given the distinct roles of MF versus RC inputs in pattern separation versus completion, our findings of the significant dorsoventral variations of MF and RC excitation in CA3 PNs may have important functional implications for the contribution of CA3 circuit to the dorsoventral difference in hippocampal function.
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Affiliation(s)
- Minghua Li
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106
| | - Yu-Qiu Jiang
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106
| | - Daniel K Lee
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106
| | - Haoran Wang
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106
| | - Melissa C Lu
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106
| | - Qian Sun
- Department of Neurosciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106
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7
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Liao Z, Losonczy A. Learning, Fast and Slow: Single- and Many-Shot Learning in the Hippocampus. Annu Rev Neurosci 2024; 47:187-209. [PMID: 38663090 PMCID: PMC11519319 DOI: 10.1146/annurev-neuro-102423-100258] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/09/2024]
Abstract
The hippocampus is critical for memory and spatial navigation. The ability to map novel environments, as well as more abstract conceptual relationships, is fundamental to the cognitive flexibility that humans and other animals require to survive in a dynamic world. In this review, we survey recent advances in our understanding of how this flexibility is implemented anatomically and functionally by hippocampal circuitry, during both active exploration (online) and rest (offline). We discuss the advantages and limitations of spike timing-dependent plasticity and the more recently discovered behavioral timescale synaptic plasticity in supporting distinct learning modes in the hippocampus. Finally, we suggest complementary roles for these plasticity types in explaining many-shot and single-shot learning in the hippocampus and discuss how these rules could work together to support the learning of cognitive maps.
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Affiliation(s)
- Zhenrui Liao
- Department of Neuroscience and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA;
| | - Attila Losonczy
- Department of Neuroscience and Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA;
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8
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Abatis M, Perin R, Niu R, van den Burg E, Hegoburu C, Kim R, Okamura M, Bito H, Markram H, Stoop R. Fear learning induces synaptic potentiation between engram neurons in the rat lateral amygdala. Nat Neurosci 2024; 27:1309-1317. [PMID: 38871992 PMCID: PMC11239494 DOI: 10.1038/s41593-024-01676-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2023] [Accepted: 05/07/2024] [Indexed: 06/15/2024]
Abstract
The lateral amygdala (LA) encodes fear memories by potentiating sensory inputs associated with threats and, in the process, recruits 10-30% of its neurons per fear memory engram. However, how the local network within the LA processes this information and whether it also plays a role in storing it are still largely unknown. Here, using ex vivo 12-patch-clamp and in vivo 32-electrode electrophysiological recordings in the LA of fear-conditioned rats, in combination with activity-dependent fluorescent and optogenetic tagging and recall, we identified a sparsely connected network between principal LA neurons that is organized in clusters. Fear conditioning specifically causes potentiation of synaptic connections between learning-recruited neurons. These findings of synaptic plasticity in an autoassociative excitatory network of the LA may suggest a basic principle through which a small number of pyramidal neurons could encode a large number of memories.
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Affiliation(s)
- Marios Abatis
- Department of Psychiatry, Center for Psychiatric Neuroscience, University Hospital of Lausanne, Prilly-Lausanne, Switzerland
| | - Rodrigo Perin
- Brain-Mind Institute, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Ruifang Niu
- Department of Psychiatry, Center for Psychiatric Neuroscience, University Hospital of Lausanne, Prilly-Lausanne, Switzerland
| | - Erwin van den Burg
- Department of Psychiatry, Center for Psychiatric Neuroscience, University Hospital of Lausanne, Prilly-Lausanne, Switzerland
| | - Chloe Hegoburu
- Department of Psychiatry, Center for Psychiatric Neuroscience, University Hospital of Lausanne, Prilly-Lausanne, Switzerland
| | - Ryang Kim
- Department of Neurochemistry, The University of Tokyo Graduate School of Medicine, Tokyo, Japan
| | - Michiko Okamura
- Department of Neurochemistry, The University of Tokyo Graduate School of Medicine, Tokyo, Japan
| | - Haruhiko Bito
- Department of Neurochemistry, The University of Tokyo Graduate School of Medicine, Tokyo, Japan
| | - Henry Markram
- Brain-Mind Institute, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Ron Stoop
- Department of Psychiatry, Center for Psychiatric Neuroscience, University Hospital of Lausanne, Prilly-Lausanne, Switzerland.
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9
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Breffle J, Germaine H, Shin JD, Jadhav SP, Miller P. Intrinsic dynamics of randomly clustered networks generate place fields and preplay of novel environments. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.26.564173. [PMID: 37961479 PMCID: PMC10634993 DOI: 10.1101/2023.10.26.564173] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/15/2023]
Abstract
During both sleep and awake immobility, hippocampal place cells reactivate time-compressed versions of sequences representing recently experienced trajectories in a phenomenon known as replay. Intriguingly, spontaneous sequences can also correspond to forthcoming trajectories in novel environments experienced later, in a phenomenon known as preplay. Here, we present a model showing that sequences of spikes correlated with the place fields underlying spatial trajectories in both previously experienced and future novel environments can arise spontaneously in neural circuits with random, clustered connectivity rather than pre-configured spatial maps. Moreover, the realistic place fields themselves arise in the circuit from minimal, landmark-based inputs. We find that preplay quality depends on the network's balance of cluster isolation and overlap, with optimal preplay occurring in small-world regimes of high clustering yet short path lengths. We validate the results of our model by applying the same place field and preplay analyses to previously published rat hippocampal place cell data. Our results show that clustered recurrent connectivity can generate spontaneous preplay and immediate replay of novel environments. These findings support a framework whereby novel sensory experiences become associated with preexisting "pluripotent" internal neural activity patterns.
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Affiliation(s)
- Jordan Breffle
- Neuroscience Program, Brandeis University, 415 South St., Waltham, MA 02454
| | - Hannah Germaine
- Neuroscience Program, Brandeis University, 415 South St., Waltham, MA 02454
| | - Justin D Shin
- Neuroscience Program, Brandeis University, 415 South St., Waltham, MA 02454
- Volen National Center for Complex Systems, Brandeis University, 415 South St., Waltham, MA 02454
- Department of Psychology, Brandeis University, 415 South St., Waltham, MA 02454
| | - Shantanu P Jadhav
- Neuroscience Program, Brandeis University, 415 South St., Waltham, MA 02454
- Volen National Center for Complex Systems, Brandeis University, 415 South St., Waltham, MA 02454
- Department of Psychology, Brandeis University, 415 South St., Waltham, MA 02454
| | - Paul Miller
- Neuroscience Program, Brandeis University, 415 South St., Waltham, MA 02454
- Volen National Center for Complex Systems, Brandeis University, 415 South St., Waltham, MA 02454
- Department of Biology, Brandeis University, 415 South St., Waltham, MA 02454
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10
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Bacigalupi JA, Favareau D. The physiology of coordination: self-resolving diverse affinities via the sparse order in relevant noise. J Physiol 2024; 602:2581-2600. [PMID: 38149665 DOI: 10.1113/jp284418] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Accepted: 12/03/2023] [Indexed: 12/28/2023] Open
Abstract
Living systems at any given moment enact a very constrained set of end-directed and contextually appropriate actions that are self-initiated from among innumerable possible alternatives. However, these constrained actions are not necessarily because the system has reduced its sensitivities to themselves and their surroundings. Quite the contrary, living systems are continually open to novel and unanticipated stimulations that require a physiology of coordination. To address these competing demands, this paper offers a novel heuristic model informed by neuroscience, systems theory, biology and sign study to explain how organisms situated in diverse, complex and ever-changing environments might draw upon the sparse order made available by 'relevant noise'. This emergent order facilitates coordination, habituation and, ultimately, understanding of the world and its relevant affordances. Inspired by the burgeoning field of coordination dynamics and physiologist Denis Noble's concept of 'biological relativity', this model proposes a view of coordination on the neuronal level that is neither sequential nor stochastic, but instead implements a causal logic of phasic alignment, such that an organism's learned and inherited sets of diverse biological affinities and sympathies can be resolved into a continuous and complex range of patterns that will implement the kind of novel orientations and radical generativity required of such organisms to adaptively explore their environments and to learn from their experiences.
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Affiliation(s)
| | - Donald Favareau
- University Scholars Programme, National University of Singapore, Singapore, Singapore
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11
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Florini D, Gandolfi D, Mapelli J, Benatti L, Pavan P, Puglisi FM. A Hybrid CMOS-Memristor Spiking Neural Network Supporting Multiple Learning Rules. IEEE TRANSACTIONS ON NEURAL NETWORKS AND LEARNING SYSTEMS 2024; 35:5117-5129. [PMID: 36099218 DOI: 10.1109/tnnls.2022.3202501] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Artificial intelligence (AI) is changing the way computing is performed to cope with real-world, ill-defined tasks for which traditional algorithms fail. AI requires significant memory access, thus running into the von Neumann bottleneck when implemented in standard computing platforms. In this respect, low-latency energy-efficient in-memory computing can be achieved by exploiting emerging memristive devices, given their ability to emulate synaptic plasticity, which provides a path to design large-scale brain-inspired spiking neural networks (SNNs). Several plasticity rules have been described in the brain and their coexistence in the same network largely expands the computational capabilities of a given circuit. In this work, starting from the electrical characterization and modeling of the memristor device, we propose a neuro-synaptic architecture that co-integrates in a unique platform with a single type of synaptic device to implement two distinct learning rules, namely, the spike-timing-dependent plasticity (STDP) and the Bienenstock-Cooper-Munro (BCM). This architecture, by exploiting the aforementioned learning rules, successfully addressed two different tasks of unsupervised learning.
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12
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Kopsick JD, Kilgore JA, Adam GC, Ascoli GA. Formation and Retrieval of Cell Assemblies in a Biologically Realistic Spiking Neural Network Model of Area CA3 in the Mouse Hippocampus. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.27.586909. [PMID: 38585941 PMCID: PMC10996657 DOI: 10.1101/2024.03.27.586909] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/09/2024]
Abstract
The hippocampal formation is critical for episodic memory, with area Cornu Ammonis 3 (CA3) a necessary substrate for auto-associative pattern completion. Recent theoretical and experimental evidence suggests that the formation and retrieval of cell assemblies enable these functions. Yet, how cell assemblies are formed and retrieved in a full-scale spiking neural network (SNN) of CA3 that incorporates the observed diversity of neurons and connections within this circuit is not well understood. Here, we demonstrate that a data-driven SNN model quantitatively reflecting the neuron type-specific population sizes, intrinsic electrophysiology, connectivity statistics, synaptic signaling, and long-term plasticity of the mouse CA3 is capable of robust auto-association and pattern completion via cell assemblies. Our results show that a broad range of assembly sizes could successfully and systematically retrieve patterns from heavily incomplete or corrupted cues after a limited number of presentations. Furthermore, performance was robust with respect to partial overlap of assemblies through shared cells, substantially enhancing memory capacity. These novel findings provide computational evidence that the specific biological properties of the CA3 circuit produce an effective neural substrate for associative learning in the mammalian brain.
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Affiliation(s)
- Jeffrey D. Kopsick
- Center for Neural Informatics, Structures, & Plasticity, College of Engineering and Computing, George Mason University, Fairfax, VA, United States
- Interdisciplinary Program in Neuroscience, College of Science, George Mason University, Fairfax, VA, United States
| | - Joseph A. Kilgore
- Department of Electrical and Computer Engineering, George Washington University, Washington, D.C., United States
| | - Gina C. Adam
- Department of Electrical and Computer Engineering, George Washington University, Washington, D.C., United States
| | - Giorgio A. Ascoli
- Center for Neural Informatics, Structures, & Plasticity, College of Engineering and Computing, George Mason University, Fairfax, VA, United States
- Interdisciplinary Program in Neuroscience, College of Science, George Mason University, Fairfax, VA, United States
- Bioengineering Department, College of Engineering and Computing, George Mason University, Fairfax, VA, United States
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13
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Nikbakht N, Pofahl M, Miguel-López A, Kamali F, Tchumatchenko T, Beck H. Efficient encoding of aversive location by CA3 long-range projections. Cell Rep 2024; 43:113957. [PMID: 38489262 DOI: 10.1016/j.celrep.2024.113957] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 01/09/2024] [Accepted: 02/28/2024] [Indexed: 03/17/2024] Open
Abstract
Memorizing locations that are harmful or dangerous is a key capability of all organisms and requires an integration of affective and spatial information. In mammals, the dorsal hippocampus mainly processes spatial information, while the intermediate to ventral hippocampal divisions receive affective information via the amygdala. However, how spatial and aversive information is integrated is currently unknown. To address this question, we recorded the activity of hippocampal long-range CA3 axons at single-axon resolution in mice forming an aversive spatial memory. We show that intermediate CA3 to dorsal CA3 (i-dCA3) projections rapidly overrepresent areas preceding the location of an aversive stimulus due to a spatially selective addition of new place-coding axons followed by spatially non-specific stabilization. This sequence significantly improves the encoding of location by the i-dCA3 axon population. These results suggest that i-dCA3 axons transmit a precise, denoised, and stable signal indicating imminent danger to the dorsal hippocampus.
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Affiliation(s)
- Negar Nikbakht
- University of Bonn, Medical Faculty, Institute for Experimental Epileptology and Cognition Research, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Martin Pofahl
- University of Bonn, Medical Faculty, Institute for Experimental Epileptology and Cognition Research, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Albert Miguel-López
- University of Bonn, Medical Faculty, Institute for Experimental Epileptology and Cognition Research, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Fateme Kamali
- University of Bonn, Medical Faculty, Institute for Experimental Epileptology and Cognition Research, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Tatjana Tchumatchenko
- University of Bonn, Medical Faculty, Institute for Experimental Epileptology and Cognition Research, Venusberg-Campus 1, 53127 Bonn, Germany; University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany
| | - Heinz Beck
- University of Bonn, Medical Faculty, Institute for Experimental Epileptology and Cognition Research, Venusberg-Campus 1, 53127 Bonn, Germany; University Hospital Bonn, Venusberg-Campus 1, 53127 Bonn, Germany; Deutsches Zentrum für Neurodegenerative Erkrankungen e.V., Bonn, Germany.
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14
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Kuroki S, Mizuseki K. CA3 Circuit Model Compressing Sequential Information in Theta Oscillation and Replay. Neural Comput 2024; 36:501-548. [PMID: 38457750 DOI: 10.1162/neco_a_01641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2023] [Accepted: 11/20/2023] [Indexed: 03/10/2024]
Abstract
The hippocampus plays a critical role in the compression and retrieval of sequential information. During wakefulness, it achieves this through theta phase precession and theta sequences. Subsequently, during periods of sleep or rest, the compressed information reactivates through sharp-wave ripple events, manifesting as memory replay. However, how these sequential neuronal activities are generated and how they store information about the external environment remain unknown. We developed a hippocampal cornu ammonis 3 (CA3) computational model based on anatomical and electrophysiological evidence from the biological CA3 circuit to address these questions. The model comprises theta rhythm inhibition, place input, and CA3-CA3 plastic recurrent connection. The model can compress the sequence of the external inputs, reproduce theta phase precession and replay, learn additional sequences, and reorganize previously learned sequences. A gradual increase in synaptic inputs, controlled by interactions between theta-paced inhibition and place inputs, explained the mechanism of sequence acquisition. This model highlights the crucial role of plasticity in the CA3 recurrent connection and theta oscillational dynamics and hypothesizes how the CA3 circuit acquires, compresses, and replays sequential information.
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Affiliation(s)
- Satoshi Kuroki
- Department of Physiology, Graduate School of Medicine, Osaka Metropolitan University, Osaka, 545-8585, Japan
| | - Kenji Mizuseki
- Department of Physiology, Graduate School of Medicine, Osaka Metropolitan University, Osaka, 545-8585, Japan
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15
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Chen JJ, Kaufmann WA, Chen C, Arai I, Kim O, Shigemoto R, Jonas P. Developmental transformation of Ca 2+ channel-vesicle nanotopography at a central GABAergic synapse. Neuron 2024; 112:755-771.e9. [PMID: 38215739 DOI: 10.1016/j.neuron.2023.12.002] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 07/12/2023] [Accepted: 12/05/2023] [Indexed: 01/14/2024]
Abstract
The coupling between Ca2+ channels and release sensors is a key factor defining the signaling properties of a synapse. However, the coupling nanotopography at many synapses remains unknown, and it is unclear how it changes during development. To address these questions, we examined coupling at the cerebellar inhibitory basket cell (BC)-Purkinje cell (PC) synapse. Biophysical analysis of transmission by paired recording and intracellular pipette perfusion revealed that the effects of exogenous Ca2+ chelators decreased during development, despite constant reliance of release on P/Q-type Ca2+ channels. Structural analysis by freeze-fracture replica labeling (FRL) and transmission electron microscopy (EM) indicated that presynaptic P/Q-type Ca2+ channels formed nanoclusters throughout development, whereas docked vesicles were only clustered at later developmental stages. Modeling suggested a developmental transformation from a more random to a more clustered coupling nanotopography. Thus, presynaptic signaling developmentally approaches a point-to-point configuration, optimizing speed, reliability, and energy efficiency of synaptic transmission.
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Affiliation(s)
- Jing-Jing Chen
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Walter A Kaufmann
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Chong Chen
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Itaru Arai
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Olena Kim
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Ryuichi Shigemoto
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria
| | - Peter Jonas
- Institute of Science and Technology Austria (ISTA), Am Campus 1, 3400 Klosterneuburg, Austria.
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16
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Kang L, Toyoizumi T. Distinguishing examples while building concepts in hippocampal and artificial networks. Nat Commun 2024; 15:647. [PMID: 38245502 PMCID: PMC10799871 DOI: 10.1038/s41467-024-44877-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Accepted: 01/03/2024] [Indexed: 01/22/2024] Open
Abstract
The hippocampal subfield CA3 is thought to function as an auto-associative network that stores experiences as memories. Information from these experiences arrives directly from the entorhinal cortex as well as indirectly through the dentate gyrus, which performs sparsification and decorrelation. The computational purpose for these dual input pathways has not been firmly established. We model CA3 as a Hopfield-like network that stores both dense, correlated encodings and sparse, decorrelated encodings. As more memories are stored, the former merge along shared features while the latter remain distinct. We verify our model's prediction in rat CA3 place cells, which exhibit more distinct tuning during theta phases with sparser activity. Finally, we find that neural networks trained in multitask learning benefit from a loss term that promotes both correlated and decorrelated representations. Thus, the complementary encodings we have found in CA3 can provide broad computational advantages for solving complex tasks.
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Affiliation(s)
- Louis Kang
- Neural Circuits and Computations Unit, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan.
- Graduate School of Informatics, Kyoto University, 36-1 Yoshida-honmachi, Sakyo-ku, Kyoto, 606-8501, Japan.
| | - Taro Toyoizumi
- Laboratory for Neural Computation and Adaptation, RIKEN Center for Brain Science, 2-1 Hirosawa, Wako-shi, Saitama, 351-0198, Japan
- Graduate School of Information Science and Technology, University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan
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17
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Spivak L, Someck S, Levi A, Sivroni S, Stark E. Wired together, change together: Spike timing modifies transmission in converging assemblies. SCIENCE ADVANCES 2024; 10:eadj4411. [PMID: 38232172 DOI: 10.1126/sciadv.adj4411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2023] [Accepted: 12/15/2023] [Indexed: 01/19/2024]
Abstract
The precise timing of neuronal spikes may lead to changes in synaptic connectivity and is thought to be crucial for learning and memory. However, the effect of spike timing on neuronal connectivity in the intact brain remains unknown. Using closed-loop optogenetic stimulation in CA1 of freely moving mice, we generated unique spike patterns between presynaptic pyramidal cells (PYRs) and postsynaptic parvalbumin (PV)-immunoreactive cells. The stimulation led to spike transmission changes that occurred together across all presynaptic PYRs connected to the same postsynaptic PV cell. The precise timing of all presynaptic and postsynaptic cell spikes affected transmission changes. These findings reveal an unexpected plasticity mechanism, in which the spike timing of an entire cell assembly has a more substantial impact on effective connectivity than that of individual cell pairs.
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Affiliation(s)
- Lidor Spivak
- Sagol School of Neuroscience and Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Shirly Someck
- Sagol School of Neuroscience and Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Amir Levi
- Sagol School of Neuroscience and Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Shir Sivroni
- Sagol School of Neuroscience and Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Mathematics, Afeka-Tel Aviv College of Engineering, Tel-Aviv 6910717, Israel
- Department of Mathematics, The Open University of Israel, Ra'anana 4353701, Israel
| | - Eran Stark
- Sagol School of Neuroscience and Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
- Sagol Department of Neurobiology, Faculty of Natural Sciences, Haifa University, Haifa 3103301, Israel
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18
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Yu Y, Wu K, Yang X, Long J, Chang C. Terahertz Photons Improve Cognitive Functions in Posttraumatic Stress Disorder. RESEARCH (WASHINGTON, D.C.) 2023; 6:0278. [PMID: 38111677 PMCID: PMC10726292 DOI: 10.34133/research.0278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 11/12/2023] [Indexed: 12/20/2023]
Abstract
Posttraumatic stress disorder (PTSD) is a serious psychosis leading to cognitive impairment. To restore cognitive functions for patients, the main treatments are based on medication or rehabilitation training but with limited effectiveness and strong side effects. Here, we demonstrate a new treatment approach for PTSD by using terahertz (THz) photons stimulating the hippocampal CA3 subregion. We verified that this method can nonthermally restore cognitive function in PTSD rats in vivo. After THz photon irradiation, the PTSD rats' recognitive index improved by about 10% in a novel object recognition test, the PTSD rats' accuracy improved by about 100% in a shuttler box test, the PTSD rats' numbers to identify target box was about 5 times lower in a Barnes maze test, and the rate of staying in new arm increased by approximately 40% in a Y-maze test. Further experimental studies found that THz photon (34.5 THz) irradiation could improve the expression of NR2B (increased by nearly 40%) and phosphorylated NR2B (increased by about 50%). In addition, molecular dynamics simulations showed that THz photons at a frequency of 34.5 THz are mainly absorbed by the pocket of glutamate receptors rather than by glutamate molecules. Moreover, the binding between glutamate receptors and glutamate molecules was increased by THz photons. This study offers a nondrug, nonthermal approach to regulate the binding between the excitatory neurotransmitter (glutamate) and NR2B. By increasing synaptic plasticity, it effectively improves the cognitive function of animals with PTSD, providing a promising treatment strategy for NR2B-related cognitive disorders.
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Affiliation(s)
- Yun Yu
- School of Life Science and Technology,
Xi’an Jiaotong University, Xi’an 710049, China
- Innovation Laboratory of Terahertz Biophysics,
National Innovation Institute of Defense Technology, Beijing 100071, China
| | - Kaijie Wu
- Innovation Laboratory of Terahertz Biophysics,
National Innovation Institute of Defense Technology, Beijing 100071, China
| | - Xiao Yang
- Innovation Laboratory of Terahertz Biophysics,
National Innovation Institute of Defense Technology, Beijing 100071, China
| | - Jiangang Long
- School of Life Science and Technology,
Xi’an Jiaotong University, Xi’an 710049, China
| | - Chao Chang
- Innovation Laboratory of Terahertz Biophysics,
National Innovation Institute of Defense Technology, Beijing 100071, China
- School of Physics,
Peking University, Beijing 100871, China
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19
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Robert V, O'Neil K, Rashid SK, Johnson CD, De La Torre RG, Zemelman BV, Clopath C, Basu J. Entorhinal cortex glutamatergic and GABAergic projections bidirectionally control discrimination and generalization of hippocampal representations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.11.08.566107. [PMID: 37986793 PMCID: PMC10659280 DOI: 10.1101/2023.11.08.566107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2023]
Abstract
Discrimination and generalization are crucial brain-wide functions for memory and object recognition that utilize pattern separation and completion computations. Circuit mechanisms supporting these operations remain enigmatic. We show lateral entorhinal cortex glutamatergic (LEC GLU ) and GABAergic (LEC GABA ) projections are essential for object recognition memory. Silencing LEC GLU during in vivo two-photon imaging increased the population of active CA3 pyramidal cells but decreased activity rates, suggesting a sparse coding function through local inhibition. Silencing LEC GLU also decreased place cell remapping between different environments validating this circuit drives pattern separation and context discrimination. Optogenetic circuit mapping confirmed that LEC GLU drives dominant feedforward inhibition to prevent CA3 somatic and dendritic spikes. However, conjunctively active LEC GABA suppresses this local inhibition to disinhibit CA3 pyramidal neuron soma and selectively boost integrative output of LEC and CA3 recurrent network. LEC GABA thus promotes pattern completion and context generalization. Indeed, without this disinhibitory input, CA3 place maps show decreased similarity between contexts. Our findings provide circuit mechanisms whereby long-range glutamatergic and GABAergic cortico-hippocampal inputs bidirectionally modulate pattern separation and completion, providing neuronal representations with a dynamic range for context discrimination and generalization.
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20
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Liu C, Todorova R, Tang W, Oliva A, Fernandez-Ruiz A. Associative and predictive hippocampal codes support memory-guided behaviors. Science 2023; 382:eadi8237. [PMID: 37856604 PMCID: PMC10894649 DOI: 10.1126/science.adi8237] [Citation(s) in RCA: 16] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 08/21/2023] [Indexed: 10/21/2023]
Abstract
Episodic memory involves learning and recalling associations between items and their spatiotemporal context. Those memories can be further used to generate internal models of the world that enable predictions to be made. The mechanisms that support these associative and predictive aspects of memory are not yet understood. In this study, we used an optogenetic manipulation to perturb the sequential structure, but not global network dynamics, of place cells as rats traversed specific spatial trajectories. This perturbation abolished replay of those trajectories and the development of predictive representations, leading to impaired learning of new optimal trajectories during memory-guided navigation. However, place cell assembly reactivation and reward-context associative learning were unaffected. Our results show a mechanistic dissociation between two complementary hippocampal codes: an associative code (through coactivity) and a predictive code (through sequences).
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Affiliation(s)
| | | | - Wenbo Tang
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY, USA
| | - Azahara Oliva
- Department of Neurobiology and Behavior, Cornell University, Ithaca, NY, USA
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21
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Griffiths BJ, Jensen O. Gamma oscillations and episodic memory. Trends Neurosci 2023; 46:832-846. [PMID: 37550159 DOI: 10.1016/j.tins.2023.07.003] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2023] [Revised: 06/20/2023] [Accepted: 07/16/2023] [Indexed: 08/09/2023]
Abstract
Enhanced gamma oscillatory activity (30-80 Hz) accompanies the successful formation and retrieval of episodic memories. While this co-occurrence is well documented, the mechanistic contributions of gamma oscillatory activity to episodic memory remain unclear. Here, we review how gamma oscillatory activity may facilitate spike timing-dependent plasticity, neural communication, and sequence encoding/retrieval, thereby ensuring the successful formation and/or retrieval of an episodic memory. Based on the evidence reviewed, we propose that multiple, distinct forms of gamma oscillation can be found within the canonical gamma band, each of which has a complementary role in the neural processes listed above. Further exploration of these theories using causal manipulations may be key to elucidating the relevance of gamma oscillatory activity to episodic memory.
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Affiliation(s)
| | - Ole Jensen
- Centre for Human Brain Health, University of Birmingham, Birmingham, UK
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22
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Müller-Komorowska D, Kuru B, Beck H, Braganza O. Phase information is conserved in sparse, synchronous population-rate-codes via phase-to-rate recoding. Nat Commun 2023; 14:6106. [PMID: 37777512 PMCID: PMC10543394 DOI: 10.1038/s41467-023-41803-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2022] [Accepted: 09/19/2023] [Indexed: 10/02/2023] Open
Abstract
Neural computation is often traced in terms of either rate- or phase-codes. However, most circuit operations will simultaneously affect information across both coding schemes. It remains unclear how phase and rate coded information is transmitted, in the face of continuous modification at consecutive processing stages. Here, we study this question in the entorhinal cortex (EC)- dentate gyrus (DG)- CA3 system using three distinct computational models. We demonstrate that DG feedback inhibition leverages EC phase information to improve rate-coding, a computation we term phase-to-rate recoding. Our results suggest that it i) supports the conservation of phase information within sparse rate-codes and ii) enhances the efficiency of plasticity in downstream CA3 via increased synchrony. Given the ubiquity of both phase-coding and feedback circuits, our results raise the question whether phase-to-rate recoding is a recurring computational motif, which supports the generation of sparse, synchronous population-rate-codes in areas beyond the DG.
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Affiliation(s)
- Daniel Müller-Komorowska
- Neural Coding and Brain Computing Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, 904-0495, Japan.
- Institute for Experimental Epileptology and Cognition Research, University of Bonn, Bonn, Germany.
| | - Baris Kuru
- Institute for Experimental Epileptology and Cognition Research, University of Bonn, Bonn, Germany
| | - Heinz Beck
- Institute for Experimental Epileptology and Cognition Research, University of Bonn, Bonn, Germany
- Deutsches Zentrum für Neurodegenerative Erkrankungen e.V, Bonn, Germany
| | - Oliver Braganza
- Institute for Experimental Epileptology and Cognition Research, University of Bonn, Bonn, Germany.
- Institute for Socio-Economics, University of Duisburg-Essen, Duisburg, Germany.
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23
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Saponati M, Vinck M. Sequence anticipation and spike-timing-dependent plasticity emerge from a predictive learning rule. Nat Commun 2023; 14:4985. [PMID: 37604825 PMCID: PMC10442404 DOI: 10.1038/s41467-023-40651-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 08/03/2023] [Indexed: 08/23/2023] Open
Abstract
Intelligent behavior depends on the brain's ability to anticipate future events. However, the learning rules that enable neurons to predict and fire ahead of sensory inputs remain largely unknown. We propose a plasticity rule based on predictive processing, where the neuron learns a low-rank model of the synaptic input dynamics in its membrane potential. Neurons thereby amplify those synapses that maximally predict other synaptic inputs based on their temporal relations, which provide a solution to an optimization problem that can be implemented at the single-neuron level using only local information. Consequently, neurons learn sequences over long timescales and shift their spikes towards the first inputs in a sequence. We show that this mechanism can explain the development of anticipatory signalling and recall in a recurrent network. Furthermore, we demonstrate that the learning rule gives rise to several experimentally observed STDP (spike-timing-dependent plasticity) mechanisms. These findings suggest prediction as a guiding principle to orchestrate learning and synaptic plasticity in single neurons.
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Affiliation(s)
- Matteo Saponati
- Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, 60528, Frankfurt Am Main, Germany.
- IMPRS for Neural Circuits, Max-Planck Institute for Brain Research, 60438, Frankfurt Am Main, Germany.
- Donders Centre for Neuroscience, Department of Neuroinformatics, Radboud University, 6525, Nijmegen, The Netherlands.
| | - Martin Vinck
- Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, 60528, Frankfurt Am Main, Germany.
- Donders Centre for Neuroscience, Department of Neuroinformatics, Radboud University, 6525, Nijmegen, The Netherlands.
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24
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Duchet B, Bick C, Byrne Á. Mean-Field Approximations With Adaptive Coupling for Networks With Spike-Timing-Dependent Plasticity. Neural Comput 2023; 35:1481-1528. [PMID: 37437202 PMCID: PMC10422128 DOI: 10.1162/neco_a_01601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2022] [Accepted: 04/26/2023] [Indexed: 07/14/2023]
Abstract
Understanding the effect of spike-timing-dependent plasticity (STDP) is key to elucidating how neural networks change over long timescales and to design interventions aimed at modulating such networks in neurological disorders. However, progress is restricted by the significant computational cost associated with simulating neural network models with STDP and by the lack of low-dimensional description that could provide analytical insights. Phase-difference-dependent plasticity (PDDP) rules approximate STDP in phase oscillator networks, which prescribe synaptic changes based on phase differences of neuron pairs rather than differences in spike timing. Here we construct mean-field approximations for phase oscillator networks with STDP to describe part of the phase space for this very high-dimensional system. We first show that single-harmonic PDDP rules can approximate a simple form of symmetric STDP, while multiharmonic rules are required to accurately approximate causal STDP. We then derive exact expressions for the evolution of the average PDDP coupling weight in terms of network synchrony. For adaptive networks of Kuramoto oscillators that form clusters, we formulate a family of low-dimensional descriptions based on the mean-field dynamics of each cluster and average coupling weights between and within clusters. Finally, we show that such a two-cluster mean-field model can be fitted to synthetic data to provide a low-dimensional approximation of a full adaptive network with symmetric STDP. Our framework represents a step toward a low-dimensional description of adaptive networks with STDP, and could for example inform the development of new therapies aimed at maximizing the long-lasting effects of brain stimulation.
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Affiliation(s)
- Benoit Duchet
- Nuffield Department of Clinical Neuroscience, University of Oxford, Oxford X3 9DU, U.K
- MRC Brain Network Dynamics Unit, University of Oxford, Oxford X1 3TH, U.K.
| | - Christian Bick
- Department of Mathematics, Vrije Universiteit Amsterdam, Amsterdam 1081 HV, the Netherlands
- Amsterdam Neuroscience-Systems and Network Neuroscience, Amsterdam 1081 HV, the Netherlands
- Mathematical Institute, University of Oxford, Oxford X2 6GG, U.K.
| | - Áine Byrne
- School of Mathematics and Statistics, University College Dublin, Dublin D04 V1W8, Ireland
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25
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Vancura B, Geiller T, Grosmark A, Zhao V, Losonczy A. Inhibitory control of sharp-wave ripple duration during learning in hippocampal recurrent networks. Nat Neurosci 2023; 26:788-797. [PMID: 37081295 PMCID: PMC10209669 DOI: 10.1038/s41593-023-01306-7] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2021] [Accepted: 03/15/2023] [Indexed: 04/22/2023]
Abstract
Recurrent excitatory connections in hippocampal regions CA3 and CA2 are thought to play a key role in the generation of sharp-wave ripples (SWRs), electrophysiological oscillations tightly linked with learning and memory consolidation. However, it remains unknown how defined populations of inhibitory interneurons regulate these events during behavior. Here, we use large-scale, three-dimensional calcium imaging and retrospective molecular identification in the mouse hippocampus to characterize molecularly identified CA3 and CA2 interneuron activity during SWR-associated memory consolidation and spatial navigation. We describe subtype- and region-specific responses during behaviorally distinct brain states and find that SWRs are preceded by decreased cholecystokinin-expressing interneuron activity and followed by increased parvalbumin-expressing basket cell activity. The magnitude of these dynamics correlates with both SWR duration and behavior during hippocampal-dependent learning. Together these results assign subtype- and region-specific roles for inhibitory circuits in coordinating operations and learning-related plasticity in hippocampal recurrent circuits.
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Affiliation(s)
- Bert Vancura
- Department of Neuroscience, Columbia University, New York, NY, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Tristan Geiller
- Department of Neuroscience, Columbia University, New York, NY, USA.
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
| | - Andres Grosmark
- Department of Neuroscience, Columbia University, New York, NY, USA
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
- University of Connecticut Medical School, Farmington, CT, USA
| | - Vivian Zhao
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA
| | - Attila Losonczy
- Department of Neuroscience, Columbia University, New York, NY, USA.
- Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, USA.
- The Kavli Institute for Brain Science, Columbia University, New York, NY, USA.
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26
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Rao TS, Kundu S, Bannur B, George SJ, Kulkarni GU. Emulating Ebbinghaus forgetting behavior in a neuromorphic device based on 1D supramolecular nanofibres. NANOSCALE 2023; 15:7450-7459. [PMID: 37013963 DOI: 10.1039/d3nr00195d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Mimicking synaptic functions in hardware devices is a crucial step in realizing brain-like computing beyond the von Neumann architecture. 1D nanomaterials with spatial extensions of a few μm, similar to biological neurons, gain significance given the ease of electrical transport as well as directionality. Herein, we report a two-terminal optically active device based on 1D supramolecular nanofibres consisting of CS (coronene tetracarboxylate) and DMV (dimethyl viologen) forming alternating D-A (donor-acceptor) pairs, emulating synaptic functions such as the STP (short-term potentiation), LTP (long-term potentiation), PPF (paired-pulse facilitation), STDP (spike-time dependent plasticity) and learning-relearning behaviors. In addition, an extensive study on the less explored Ebbinghaus forgetting curve has been carried out. The supramolecular nanofibres being light sensitive, the potential of the device as a visual system is demonstrated using a 3 × 3 pixel array.
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Affiliation(s)
- Tejaswini S Rao
- Chemistry & Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur P. O., Bangalore-560064, India.
| | - Suman Kundu
- Centre for Nano and Soft Matter Sciences, Shivanapura, Bangalore-562162, India
| | - Bharath Bannur
- Chemistry & Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur P. O., Bangalore-560064, India.
| | - Subi J George
- Supramolecular Chemistry Laboratory, New Chemistry Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore-560064, India
| | - Giridhar U Kulkarni
- Chemistry & Physics of Materials Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur P. O., Bangalore-560064, India.
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27
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Lutzu S, Alviña K, Puente N, Grandes P, Castillo PE. Target cell-specific plasticity rules of NMDA receptor-mediated synaptic transmission in the hippocampus. Front Cell Neurosci 2023; 17:1068472. [PMID: 37091922 PMCID: PMC10113460 DOI: 10.3389/fncel.2023.1068472] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 03/20/2023] [Indexed: 04/08/2023] Open
Abstract
Long-term potentiation and depression of NMDA receptor-mediated synaptic transmission (NMDAR LTP/LTD) can significantly impact synapse function and information transfer in several brain areas. However, the mechanisms that determine the direction of NMDAR plasticity are poorly understood. Here, using physiologically relevant patterns of presynaptic and postsynaptic burst activities, whole-cell patch clamp recordings, 2-photon laser calcium imaging in acute rat hippocampal slices and immunoelectron microscopy, we tested whether distinct calcium dynamics and group I metabotropic glutamate receptor (I-mGluR) subtypes control the sign of NMDAR plasticity. We found that postsynaptic calcium transients (CaTs) in response to hippocampal MF stimulation were significantly larger during the induction of NMDAR-LTP compared to NMDAR-LTD at the MF-to-CA3 pyramidal cell (MF-CA3) synapse. This difference was abolished by pharmacological blockade of mGluR5 and was significantly reduced by depletion of intracellular calcium stores, whereas blocking mGluR1 had no effect on these CaTs. In addition, we discovered that MF to hilar mossy cell (MF-MC) synapses, which share several structural and functional commonalities with MF-CA3 synapses, also undergoes NMDAR plasticity. To our surprise, however, we found that the postsynaptic distribution of I-mGluR subtypes at these two synapses differ, and the same induction protocol that induces NMDAR-LTD at MF-CA3 synapses, only triggered NMDAR-LTP at MF-MC synapses, despite a comparable calcium dynamics. Thus, postsynaptic calcium dynamics alone cannot predict the sign of NMDAR plasticity, indicating that both postsynaptic calcium rise and the relative contribution of I-mGluR subtypes likely determine the learning rules of NMDAR plasticity.
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Affiliation(s)
- Stefano Lutzu
- Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, United States
| | - Karina Alviña
- Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, United States
| | - Nagore Puente
- Department of Neurosciences, Faculty of Medicine and Nursing, University of the Basque Country UPV/EHU, Leioa, Spain
- Achucarro Basque Center for Neuroscience, Science Park of the University of the Basque Country UPV/EHU, Leioa, Spain
| | - Pedro Grandes
- Department of Neurosciences, Faculty of Medicine and Nursing, University of the Basque Country UPV/EHU, Leioa, Spain
- Achucarro Basque Center for Neuroscience, Science Park of the University of the Basque Country UPV/EHU, Leioa, Spain
| | - Pablo E. Castillo
- Dominick P. Purpura Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, United States
- Department of Psychiatry and Behavioral Sciences, Albert Einstein College of Medicine, Bronx, NY, United States
- *Correspondence: Pablo E. Castillo,
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28
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Spike timing-dependent plasticity and memory. Curr Opin Neurobiol 2023; 80:102707. [PMID: 36924615 DOI: 10.1016/j.conb.2023.102707] [Citation(s) in RCA: 13] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 01/18/2023] [Accepted: 02/15/2023] [Indexed: 03/16/2023]
Abstract
Spike timing-dependent plasticity (STDP) is a bidirectional form of synaptic plasticity discovered about 30 years ago and based on the relative timing of pre- and post-synaptic spiking activity with a millisecond precision. STDP is thought to be involved in the formation of memory but the millisecond-precision spike-timing required for STDP is difficult to reconcile with the much slower timescales of behavioral learning. This review therefore aims to expose and discuss recent findings about i) the multiple STDP learning rules at both excitatory and inhibitory synapses in vitro, ii) the contribution of STDP-like synaptic plasticity in the formation of memory in vivo and iii) the implementation of STDP rules in artificial neural networks and memristive devices.
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29
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Vancura B, Geiller T, Losonczy A. Organization and Plasticity of Inhibition in Hippocampal Recurrent Circuits. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.13.532296. [PMID: 36993553 PMCID: PMC10054977 DOI: 10.1101/2023.03.13.532296] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Excitatory-inhibitory interactions structure recurrent network dynamics for efficient cortical computations. In the CA3 area of the hippocampus, recurrent circuit dynamics, including experience-induced plasticity at excitatory synapses, are thought to play a key role in episodic memory encoding and consolidation via rapid generation and flexible selection of neural ensembles. However, in vivo activity of identified inhibitory motifs supporting this recurrent circuitry has remained largely inaccessible, and it is unknown whether CA3 inhibition is also modifiable upon experience. Here we use large-scale, 3-dimensional calcium imaging and retrospective molecular identification in the mouse hippocampus to obtain the first comprehensive description of molecularly-identified CA3 interneuron dynamics during both spatial navigation and sharp-wave ripple (SWR)-associated memory consolidation. Our results uncover subtype-specific dynamics during behaviorally distinct brain-states. Our data also demonstrate predictive, reflective, and experience-driven plastic recruitment of specific inhibitory motifs during SWR-related memory reactivation. Together these results assign active roles for inhibitory circuits in coordinating operations and plasticity in hippocampal recurrent circuits.
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30
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Gao Y. A computational model of learning flexible navigation in a maze by layout-conforming replay of place cells. Front Comput Neurosci 2023; 17:1053097. [PMID: 36846726 PMCID: PMC9947252 DOI: 10.3389/fncom.2023.1053097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 01/16/2023] [Indexed: 02/11/2023] Open
Abstract
Recent experimental observations have shown that the reactivation of hippocampal place cells (PC) during sleep or wakeful immobility depicts trajectories that can go around barriers and can flexibly adapt to a changing maze layout. However, existing computational models of replay fall short of generating such layout-conforming replay, restricting their usage to simple environments, like linear tracks or open fields. In this paper, we propose a computational model that generates layout-conforming replay and explains how such replay drives the learning of flexible navigation in a maze. First, we propose a Hebbian-like rule to learn the inter-PC synaptic strength during exploration. Then we use a continuous attractor network (CAN) with feedback inhibition to model the interaction among place cells and hippocampal interneurons. The activity bump of place cells drifts along paths in the maze, which models layout-conforming replay. During replay in sleep, the synaptic strengths from place cells to striatal medium spiny neurons (MSN) are learned by a novel dopamine-modulated three-factor rule to store place-reward associations. During goal-directed navigation, the CAN periodically generates replay trajectories from the animal's location for path planning, and the trajectory leading to a maximal MSN activity is followed by the animal. We have implemented our model into a high-fidelity virtual rat in the MuJoCo physics simulator. Extensive experiments have demonstrated that its superior flexibility during navigation in a maze is due to a continuous re-learning of inter-PC and PC-MSN synaptic strength.
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Affiliation(s)
- Yuanxiang Gao
- School of Information and Communication Engineering, University of Electronic Science and Technology of China, Chengdu, China,CAS Key Laboratory of Theoretical Physics, Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing, China,*Correspondence: Yuanxiang Gao ✉
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31
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Goldt S, Krzakala F, Zdeborová L, Brunel N. Bayesian reconstruction of memories stored in neural networks from their connectivity. PLoS Comput Biol 2023; 19:e1010813. [PMID: 36716332 PMCID: PMC9910750 DOI: 10.1371/journal.pcbi.1010813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2021] [Revised: 02/09/2023] [Accepted: 12/12/2022] [Indexed: 02/01/2023] Open
Abstract
The advent of comprehensive synaptic wiring diagrams of large neural circuits has created the field of connectomics and given rise to a number of open research questions. One such question is whether it is possible to reconstruct the information stored in a recurrent network of neurons, given its synaptic connectivity matrix. Here, we address this question by determining when solving such an inference problem is theoretically possible in specific attractor network models and by providing a practical algorithm to do so. The algorithm builds on ideas from statistical physics to perform approximate Bayesian inference and is amenable to exact analysis. We study its performance on three different models, compare the algorithm to standard algorithms such as PCA, and explore the limitations of reconstructing stored patterns from synaptic connectivity.
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Affiliation(s)
- Sebastian Goldt
- International School of Advanced Studies (SISSA), Trieste, Italy
- * E-mail:
| | - Florent Krzakala
- IdePHICS laboratory, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland
| | - Lenka Zdeborová
- SPOC laboratory, Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland
| | - Nicolas Brunel
- Department of Neurobiology, Duke University, Durham, North Carolina, United States of America
- Department of Physics, Duke University, Durham, North Carolina, United States of America
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32
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KASAI H. Unraveling the mysteries of dendritic spine dynamics: Five key principles shaping memory and cognition. PROCEEDINGS OF THE JAPAN ACADEMY. SERIES B, PHYSICAL AND BIOLOGICAL SCIENCES 2023; 99:254-305. [PMID: 37821392 PMCID: PMC10749395 DOI: 10.2183/pjab.99.018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2023] [Accepted: 07/11/2023] [Indexed: 10/13/2023]
Abstract
Recent research extends our understanding of brain processes beyond just action potentials and chemical transmissions within neural circuits, emphasizing the mechanical forces generated by excitatory synapses on dendritic spines to modulate presynaptic function. From in vivo and in vitro studies, we outline five central principles of synaptic mechanics in brain function: P1: Stability - Underpinning the integral relationship between the structure and function of the spine synapses. P2: Extrinsic dynamics - Highlighting synapse-selective structural plasticity which plays a crucial role in Hebbian associative learning, distinct from pathway-selective long-term potentiation (LTP) and depression (LTD). P3: Neuromodulation - Analyzing the role of G-protein-coupled receptors, particularly dopamine receptors, in time-sensitive modulation of associative learning frameworks such as Pavlovian classical conditioning and Thorndike's reinforcement learning (RL). P4: Instability - Addressing the intrinsic dynamics crucial to memory management during continual learning, spotlighting their role in "spine dysgenesis" associated with mental disorders. P5: Mechanics - Exploring how synaptic mechanics influence both sides of synapses to establish structural traces of short- and long-term memory, thereby aiding the integration of mental functions. We also delve into the historical background and foresee impending challenges.
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Affiliation(s)
- Haruo KASAI
- International Research Center for Neurointelligence (WPI-IRCN), UTIAS, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
- Laboratory of Structural Physiology, Center for Disease Biology and Integrative Medicine, Faculty of Medicine, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
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33
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Fukai T. Computational models of Idling brain activity for memory processing. Neurosci Res 2022; 189:75-82. [PMID: 36592825 DOI: 10.1016/j.neures.2022.12.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Accepted: 12/29/2022] [Indexed: 01/01/2023]
Abstract
Studying the underlying neural mechanisms of cognitive functions of the brain is one of the central questions in modern biology. Moreover, it has significantly impacted the development of novel technologies in artificial intelligence. Spontaneous activity is a unique feature of the brain and is currently lacking in many artificially constructed intelligent machines. Spontaneous activity may represent the brain's idling states, which are internally driven by neuronal networks and possibly participate in offline processing during awake, sleep, and resting states. Evidence is accumulating that the brain's spontaneous activity is not mere noise but part of the mechanisms to process information about previous experiences. A bunch of literature has shown how previous sensory and behavioral experiences influence the subsequent patterns of brain activity with various methods in various animals. It seems, however, that the patterns of neural activity and their computational roles differ significantly from area to area and from function to function. In this article, I review the various forms of the brain's spontaneous activity, especially those observed during memory processing, and some attempts to model the generation mechanisms and computational roles of such activities.
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Affiliation(s)
- Tomoki Fukai
- Okinawa Institute of Science and Technology, Tancha 1919-1, Onna-son, Okinawa 904-0495, Japan.
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34
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Pietras B, Schmutz V, Schwalger T. Mesoscopic description of hippocampal replay and metastability in spiking neural networks with short-term plasticity. PLoS Comput Biol 2022; 18:e1010809. [PMID: 36548392 PMCID: PMC9822116 DOI: 10.1371/journal.pcbi.1010809] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 01/06/2023] [Accepted: 12/11/2022] [Indexed: 12/24/2022] Open
Abstract
Bottom-up models of functionally relevant patterns of neural activity provide an explicit link between neuronal dynamics and computation. A prime example of functional activity patterns are propagating bursts of place-cell activities called hippocampal replay, which is critical for memory consolidation. The sudden and repeated occurrences of these burst states during ongoing neural activity suggest metastable neural circuit dynamics. As metastability has been attributed to noise and/or slow fatigue mechanisms, we propose a concise mesoscopic model which accounts for both. Crucially, our model is bottom-up: it is analytically derived from the dynamics of finite-size networks of Linear-Nonlinear Poisson neurons with short-term synaptic depression. As such, noise is explicitly linked to stochastic spiking and network size, and fatigue is explicitly linked to synaptic dynamics. To derive the mesoscopic model, we first consider a homogeneous spiking neural network and follow the temporal coarse-graining approach of Gillespie to obtain a "chemical Langevin equation", which can be naturally interpreted as a stochastic neural mass model. The Langevin equation is computationally inexpensive to simulate and enables a thorough study of metastable dynamics in classical setups (population spikes and Up-Down-states dynamics) by means of phase-plane analysis. An extension of the Langevin equation for small network sizes is also presented. The stochastic neural mass model constitutes the basic component of our mesoscopic model for replay. We show that the mesoscopic model faithfully captures the statistical structure of individual replayed trajectories in microscopic simulations and in previously reported experimental data. Moreover, compared to the deterministic Romani-Tsodyks model of place-cell dynamics, it exhibits a higher level of variability regarding order, direction and timing of replayed trajectories, which seems biologically more plausible and could be functionally desirable. This variability is the product of a new dynamical regime where metastability emerges from a complex interplay between finite-size fluctuations and local fatigue.
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Affiliation(s)
- Bastian Pietras
- Institute for Mathematics, Technische Universität Berlin, Berlin, Germany
- Bernstein Center for Computational Neuroscience, Berlin, Germany
- Department of Information and Communication Technologies, Universitat Pompeu Fabra, Barcelona, Spain
| | - Valentin Schmutz
- Brain Mind Institute, School of Computer and Communication Sciences and School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland
| | - Tilo Schwalger
- Institute for Mathematics, Technische Universität Berlin, Berlin, Germany
- Bernstein Center for Computational Neuroscience, Berlin, Germany
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35
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Abstract
When navigating through space, we must maintain a representation of our position in real time; when recalling a past episode, a memory can come back in a flash. Interestingly, the brain's spatial representation system, including the hippocampus, supports these two distinct timescale functions. How are neural representations of space used in the service of both real-world navigation and internal mnemonic processes? Recent progress has identified sequences of hippocampal place cells, evolving at multiple timescales in accordance with either navigational behaviors or internal oscillations, that underlie these functions. We review experimental findings on experience-dependent modulation of these sequential representations and consider how they link real-world navigation to time-compressed memories. We further discuss recent work suggesting the prevalence of these sequences beyond hippocampus and propose that these multiple-timescale mechanisms may represent a general algorithm for organizing cell assemblies, potentially unifying the dual roles of the spatial representation system in memory and navigation.
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Affiliation(s)
- Wenbo Tang
- Graduate Program in Neuroscience, Brandeis University, Waltham, Massachusetts, USA;
| | - Shantanu P Jadhav
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts, USA;
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36
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Moore JJ, Robert V, Rashid SK, Basu J. Assessing Local and Branch-specific Activity in Dendrites. Neuroscience 2022; 489:143-164. [PMID: 34756987 PMCID: PMC9125998 DOI: 10.1016/j.neuroscience.2021.10.022] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2021] [Revised: 10/09/2021] [Accepted: 10/21/2021] [Indexed: 01/12/2023]
Abstract
Dendrites are elaborate neural processes which integrate inputs from various sources in space and time. While decades of work have suggested an independent role for dendrites in driving nonlinear computations for the cell, only recently have technological advances enabled us to capture the variety of activity in dendrites and their coupling dynamics with the soma. Under certain circumstances, activity generated in a given dendritic branch remains isolated, such that the soma or even sister dendrites are not privy to these localized signals. Such branch-specific activity could radically increase the capacity and flexibility of coding for the cell as a whole. Here, we discuss these forms of localized and branch-specific activity, their functional relevance in plasticity and behavior, and their supporting biophysical and circuit-level mechanisms. We conclude by showcasing electrical and optical approaches in hippocampal area CA3, using original experimental data to discuss experimental and analytical methodology and key considerations to take when investigating the functional relevance of independent dendritic activity.
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Affiliation(s)
- Jason J Moore
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
| | - Vincent Robert
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
| | - Shannon K Rashid
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA
| | - Jayeeta Basu
- Neuroscience Institute, New York University Langone Health, New York, NY 10016, USA; Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY 10016, USA; Department of Psychiatry, New York University Grossman School of Medicine, New York, NY 10016, USA.
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37
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Eom K, Lee HR, Hyun JH, An H, Lee YS, Ho WK, Lee SH. Gradual decorrelation of CA3 ensembles associated with contextual discrimination learning is impaired by Kv1.2 insufficiency. Hippocampus 2022; 32:193-216. [PMID: 34964210 DOI: 10.1002/hipo.23400] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 11/30/2021] [Accepted: 12/12/2021] [Indexed: 12/13/2022]
Abstract
The associative network of hippocampal CA3 is thought to contribute to rapid formation of contextual memory from one-trial learning, but the network mechanisms underlying decorrelation of neuronal ensembles in CA3 is largely unknown. Kv1.2 expressions in rodent CA3 pyramidal cells (CA3-PCs) are polarized to distal apical dendrites, and its downregulation specifically enhances dendritic responses to perforant pathway (PP) synaptic inputs. We found that haploinsufficiency of Kv1.2 (Kcna2+/-) in CA3-PCs, but not Kv1.1 (Kcna1+/-), lowers the threshold for long-term potentiation (LTP) at PP-CA3 synapses, and that the Kcna2+/- mice are normal in discrimination of distinct contexts but impaired in discrimination of similar but slightly distinct contexts. We further examined the neuronal ensembles in CA3 and dentate gyrus (DG), which represent the two similar contexts using in situ hybridization of immediate early genes, Homer1a and Arc. The size and overlap of CA3 ensembles activated by the first visit to the similar contexts were not different between wild type and Kcna2+/- mice, but these ensemble parameters diverged over training days between genotypes, suggesting that abnormal plastic changes at PP-CA3 synapses of Kcna2+/- mice is responsible for the impaired pattern separation. Unlike CA3, DG ensembles were not different between two genotype mice. The DG ensembles were already separated on the first day, and their overlap did not further evolve. Eventually, the Kcna2+/- mice exhibited larger CA3 ensemble size and overlap upon retrieval of two contexts, compared to wild type or Kcna1+/- mice. These results suggest that sparse LTP at PP-CA3 synapse probably supervised by mossy fiber inputs is essential for gradual decorrelation of CA3 ensembles.
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Affiliation(s)
- Kisang Eom
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Hyoung Ro Lee
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Jung Ho Hyun
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Hyunhoe An
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
- Department of Brain and Cognitive Science, Seoul National University College of Natural Sciences, Seoul, Republic of Korea
| | - Yong-Seok Lee
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
| | - Won-Kyung Ho
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
- Department of Brain and Cognitive Science, Seoul National University College of Natural Sciences, Seoul, Republic of Korea
| | - Suk-Ho Lee
- Cell Physiology Laboratory, Department of Physiology, Seoul National University College of Medicine, Seoul, Republic of Korea
- Department of Brain and Cognitive Science, Seoul National University College of Natural Sciences, Seoul, Republic of Korea
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38
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Ecker A, Bagi B, Vértes E, Steinbach-Németh O, Karlocai MR, Papp OI, Miklós I, Hájos N, Freund T, Gulyás AI, Káli S. Hippocampal sharp wave-ripples and the associated sequence replay emerge from structured synaptic interactions in a network model of area CA3. eLife 2022; 11:71850. [PMID: 35040779 PMCID: PMC8865846 DOI: 10.7554/elife.71850] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 01/17/2022] [Indexed: 11/25/2022] Open
Abstract
Hippocampal place cells are activated sequentially as an animal explores its environment. These activity sequences are internally recreated (‘replayed’), either in the same or reversed order, during bursts of activity (sharp wave-ripples [SWRs]) that occur in sleep and awake rest. SWR-associated replay is thought to be critical for the creation and maintenance of long-term memory. In order to identify the cellular and network mechanisms of SWRs and replay, we constructed and simulated a data-driven model of area CA3 of the hippocampus. Our results show that the chain-like structure of recurrent excitatory interactions established during learning not only determines the content of replay, but is essential for the generation of the SWRs as well. We find that bidirectional replay requires the interplay of the experimentally confirmed, temporally symmetric plasticity rule, and cellular adaptation. Our model provides a unifying framework for diverse phenomena involving hippocampal plasticity, representations, and dynamics, and suggests that the structured neural codes induced by learning may have greater influence over cortical network states than previously appreciated.
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39
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Fukai T, Asabuki T, Haga T. Neural mechanisms for learning hierarchical structures of information. Curr Opin Neurobiol 2021; 70:145-153. [PMID: 34808521 DOI: 10.1016/j.conb.2021.10.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 09/27/2021] [Accepted: 10/27/2021] [Indexed: 10/19/2022]
Abstract
Spatial and temporal information from the environment is often hierarchically organized, so is our knowledge formed about the environment. Identifying the meaningful segments embedded in hierarchically structured information is crucial for cognitive functions, including visual, auditory, motor, memory, and language processing. Segmentation enables the grasping of the links between isolated entities, offering the basis for reasoning and thinking. Importantly, the brain learns such segmentation without external instructions. Here, we review the underlying computational mechanisms implemented at the single-cell and network levels. The network-level mechanism has an interesting similarity to machine-learning methods for graph segmentation. The brain possibly implements methods for the analysis of the hierarchical structures of the environment at multiple levels of its processing hierarchy.
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Affiliation(s)
- Tomoki Fukai
- Neural Coding and Brain Computing Unit, Okinawa Institute of Science and Technology, Tancha 1919-1, Onna-son, Okinawa 904-0495, Japan.
| | - Toshitake Asabuki
- Neural Coding and Brain Computing Unit, Okinawa Institute of Science and Technology, Tancha 1919-1, Onna-son, Okinawa 904-0495, Japan
| | - Tatsuya Haga
- Neural Coding and Brain Computing Unit, Okinawa Institute of Science and Technology, Tancha 1919-1, Onna-son, Okinawa 904-0495, Japan
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40
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Shen C, Gao X, Chen C, Ren S, Xu JL, Xia YD, Wang SD. ZnO nanowire optoelectronic synapse for neuromorphic computing. NANOTECHNOLOGY 2021; 33:065205. [PMID: 34736234 DOI: 10.1088/1361-6528/ac3687] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2021] [Accepted: 11/04/2021] [Indexed: 06/13/2023]
Abstract
Artificial synapses that integrate functions of sensing, memory and computing are highly desired for developing brain-inspired neuromorphic hardware. In this work, an optoelectronic synapse based on the ZnO nanowire (NW) transistor is achieved, which can be used to emulate both the short-term and long-term synaptic plasticity. Synaptic potentiation is present when the device is stimulated by light pulses, arising from the light-induced O2desorption and the persistent photoconductivity behavior of the ZnO NW. On the other hand, synaptic depression occurs when the device is stimulated by electrical pulses in dark, which is realized by introducing a charge trapping layer in the gate dielectric to trap carriers. Simulation of a neural network utilizing the ZnO NW synapses is carried out, demonstrating a high recognition accuracy over 90% after only 20 training epochs for recognizing the Modified National Institute of Standards and Technology digits. The present nanoscale optoelectronic synapse has great potential in the development of neuromorphic visual systems.
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Affiliation(s)
- Cong Shen
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, Jiangsu 215123, People's Republic of China
| | - Xu Gao
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, Jiangsu 215123, People's Republic of China
| | - Cheng Chen
- School of Optoelectronic Science and Engineering, Key Laboratory of Advanced Optical Manufacturing Technologies of Jiangsu Province, Soochow University, Suzhou, Jiangsu 215006, People's Republic of China
| | - Shan Ren
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, Jiangsu 215123, People's Republic of China
| | - Jian-Long Xu
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, Jiangsu 215123, People's Republic of China
| | - Yi-Dong Xia
- Department of Materials Science and Engineering, College of Engineering and Applied Sciences, Nanjing University, Nanjing, Jiangsu 210093, People's Republic of China
| | - Sui-Dong Wang
- Institute of Functional Nano & Soft Materials (FUNSOM), Jiangsu Key Laboratory for Carbon-Based Functional Materials & Devices, Soochow University, Suzhou, Jiangsu 215123, People's Republic of China
- Macao Institute of Materials Science and Engineering (MIMSE), Macau University of Science and Technology, Taipa 999078, Macau, People's Republic of China
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41
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Drifting assemblies for persistent memory: Neuron transitions and unsupervised compensation. Proc Natl Acad Sci U S A 2021; 118:2023832118. [PMID: 34772802 DOI: 10.1073/pnas.2023832118] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/11/2021] [Indexed: 11/18/2022] Open
Abstract
Change is ubiquitous in living beings. In particular, the connectome and neural representations can change. Nevertheless, behaviors and memories often persist over long times. In a standard model, associative memories are represented by assemblies of strongly interconnected neurons. For faithful storage these assemblies are assumed to consist of the same neurons over time. Here we propose a contrasting memory model with complete temporal remodeling of assemblies, based on experimentally observed changes of synapses and neural representations. The assemblies drift freely as noisy autonomous network activity and spontaneous synaptic turnover induce neuron exchange. The gradual exchange allows activity-dependent and homeostatic plasticity to conserve the representational structure and keep inputs, outputs, and assemblies consistent. This leads to persistent memory. Our findings explain recent experimental results on temporal evolution of fear memory representations and suggest that memory systems need to be understood in their completeness as individual parts may constantly change.
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42
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Humphries R, Mellor JR, O'Donnell C. Acetylcholine Boosts Dendritic NMDA Spikes in a CA3 Pyramidal Neuron Model. Neuroscience 2021; 489:69-83. [PMID: 34780920 DOI: 10.1016/j.neuroscience.2021.11.014] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Revised: 10/12/2021] [Accepted: 11/05/2021] [Indexed: 11/25/2022]
Abstract
Acetylcholine has been proposed to facilitate the formation of memory ensembles within the hippocampal CA3 network, by enhancing plasticity at CA3-CA3 recurrent synapses. Regenerative NMDA receptor (NMDAR) activation in CA3 neuron dendrites (NMDA spikes) increase synaptic Ca2+ influx and can trigger this synaptic plasticity. Acetylcholine inhibits potassium channels which enhances dendritic excitability and therefore could facilitate NMDA spike generation. Here, we investigate NMDAR-mediated nonlinear synaptic integration in stratum radiatum (SR) and stratum lacunosum moleculare (SLM) dendrites in a reconstructed CA3 neuron computational model and study the effect of cholinergic inhibition of potassium conductances on this nonlinearity. We found that distal SLM dendrites, with a higher input resistance, had a lower threshold for NMDA spike generation compared to SR dendrites. Simulating acetylcholine by blocking potassium channels (M-type, A-type, Ca2+-activated, and inwardly-rectifying) increased dendritic excitability and reduced the number of synapses required to generate NMDA spikes, particularly in the SR dendrites. The magnitude of this effect was heterogeneous across different dendritic branches within the same neuron. These results predict that acetylcholine facilitates dendritic integration and NMDA spike generation in selected CA3 dendrites which could strengthen connections between specific CA3 neurons to form memory ensembles.
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Affiliation(s)
- Rachel Humphries
- Center for Synaptic Plasticity, School of Physiology, Pharmacology and Neuroscience, University of Bristol, University Walk, Bristol BS8 1TD, UK; Computational Neuroscience Unit, School of Computer Science, Electrical and Electronic Engineering, and Engineering Mathematics, University of Bristol, Bristol BS8 1UB, UK
| | - Jack R Mellor
- Center for Synaptic Plasticity, School of Physiology, Pharmacology and Neuroscience, University of Bristol, University Walk, Bristol BS8 1TD, UK
| | - Cian O'Donnell
- Computational Neuroscience Unit, School of Computer Science, Electrical and Electronic Engineering, and Engineering Mathematics, University of Bristol, Bristol BS8 1UB, UK; School of Computing, Engineering and Intelligent Systems, Ulster University, Magee Campus, Northland Road, Derry/Londonderry BT48 7JL, UK.
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43
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Inglebert Y, Debanne D. Calcium and Spike Timing-Dependent Plasticity. Front Cell Neurosci 2021; 15:727336. [PMID: 34616278 PMCID: PMC8488271 DOI: 10.3389/fncel.2021.727336] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 08/26/2021] [Indexed: 11/13/2022] Open
Abstract
Since its discovery, spike timing-dependent synaptic plasticity (STDP) has been thought to be a primary mechanism underlying the brain's ability to learn and to form new memories. However, despite the enormous interest in both the experimental and theoretical neuroscience communities in activity-dependent plasticity, it is still unclear whether plasticity rules inferred from in vitro experiments apply to in vivo conditions. Among the multiple reasons why plasticity rules in vivo might differ significantly from in vitro studies is that extracellular calcium concentration use in most studies is higher than concentrations estimated in vivo. STDP, like many forms of long-term synaptic plasticity, strongly depends on intracellular calcium influx for its induction. Here, we discuss the importance of considering physiological levels of extracellular calcium concentration to study functional plasticity.
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Affiliation(s)
- Yanis Inglebert
- UNIS, UMR1072, INSERM, Aix-Marseille University, Marseille, France.,Department of Pharmacology and Therapeutics and Cell Information Systems, McGill University, Montreal, QC, Canada
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44
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Prince LY, Bacon T, Humphries R, Tsaneva-Atanasova K, Clopath C, Mellor JR. Separable actions of acetylcholine and noradrenaline on neuronal ensemble formation in hippocampal CA3 circuits. PLoS Comput Biol 2021; 17:e1009435. [PMID: 34597293 PMCID: PMC8513881 DOI: 10.1371/journal.pcbi.1009435] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 10/13/2021] [Accepted: 09/08/2021] [Indexed: 11/19/2022] Open
Abstract
In the hippocampus, episodic memories are thought to be encoded by the formation of ensembles of synaptically coupled CA3 pyramidal cells driven by sparse but powerful mossy fiber inputs from dentate gyrus granule cells. The neuromodulators acetylcholine and noradrenaline are separately proposed as saliency signals that dictate memory encoding but it is not known if they represent distinct signals with separate mechanisms. Here, we show experimentally that acetylcholine, and to a lesser extent noradrenaline, suppress feed-forward inhibition and enhance Excitatory-Inhibitory ratio in the mossy fiber pathway but CA3 recurrent network properties are only altered by acetylcholine. We explore the implications of these findings on CA3 ensemble formation using a hierarchy of models. In reconstructions of CA3 pyramidal cells, mossy fiber pathway disinhibition facilitates postsynaptic dendritic depolarization known to be required for synaptic plasticity at CA3-CA3 recurrent synapses. We further show in a spiking neural network model of CA3 how acetylcholine-specific network alterations can drive rapid overlapping ensemble formation. Thus, through these distinct sets of mechanisms, acetylcholine and noradrenaline facilitate the formation of neuronal ensembles in CA3 that encode salient episodic memories in the hippocampus but acetylcholine selectively enhances the density of memory storage.
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Affiliation(s)
- Luke Y. Prince
- Centre for Synaptic Plasticity, School of Physiology Pharmacology, and Neuroscience, University of Bristol, Bristol, United Kingdom
- Mila, Montreal, Quebec, Canada
- School of Computer Science, McGill University, Montreal, Quebec, Canada
| | - Travis Bacon
- Centre for Synaptic Plasticity, School of Physiology Pharmacology, and Neuroscience, University of Bristol, Bristol, United Kingdom
| | - Rachel Humphries
- Centre for Synaptic Plasticity, School of Physiology Pharmacology, and Neuroscience, University of Bristol, Bristol, United Kingdom
| | - Krasimira Tsaneva-Atanasova
- Department of Mathematics and Living Systems Institute, University of Exeter, Exeter, United Kingdom
- EPRSC Centre for Predictive Modelling in Healthcare, University of Exeter, Exeter, United Kingdom
| | - Claudia Clopath
- Bioengineering Department, Imperial College London, London, United Kingdom
| | - Jack R. Mellor
- Centre for Synaptic Plasticity, School of Physiology Pharmacology, and Neuroscience, University of Bristol, Bristol, United Kingdom
- * E-mail:
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45
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Haga T, Fukai T. Multiscale representations of community structures in attractor neural networks. PLoS Comput Biol 2021; 17:e1009296. [PMID: 34424901 PMCID: PMC8412329 DOI: 10.1371/journal.pcbi.1009296] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 09/02/2021] [Accepted: 07/21/2021] [Indexed: 11/19/2022] Open
Abstract
Our cognition relies on the ability of the brain to segment hierarchically structured events on multiple scales. Recent evidence suggests that the brain performs this event segmentation based on the structure of state-transition graphs behind sequential experiences. However, the underlying circuit mechanisms are poorly understood. In this paper we propose an extended attractor network model for graph-based hierarchical computation which we call the Laplacian associative memory. This model generates multiscale representations for communities (clusters) of associative links between memory items, and the scale is regulated by the heterogenous modulation of inhibitory circuits. We analytically and numerically show that these representations correspond to graph Laplacian eigenvectors, a popular method for graph segmentation and dimensionality reduction. Finally, we demonstrate that our model exhibits chunked sequential activity patterns resembling hippocampal theta sequences. Our model connects graph theory and attractor dynamics to provide a biologically plausible mechanism for abstraction in the brain. Our experiences are often hierarchically organized, so is our knowledge. Identifying meaningful segments in hierarchically structured information is crucial for many cognitive functions including visual, auditory, motor, memory, language processing, and reasoning. Herein, we show that the attractor dynamics of recurrent neural circuits offer a biologically plausible way for hierarchical segmentation. We found that an extended model of associative memory autonomously performs segmentation by finding groups of tightly linked memories. We proved that the neural dynamics of our model mathematically coincide with optimal graph segmentation in graph theory and are consistent with the experimentally observed nature of human behaviors and neural activities. Our model established a previously unexpected relationship between attractor neural networks and the graph-theoretic processing of knowledge structures. Our model also provides experimentally testable predictions, particularly regarding the role of inhibitory circuits in controlling representational granularity.
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Affiliation(s)
- Tatsuya Haga
- Okinawa Institute of Science and Technology, Onna-son, Okinawa, Japan
- * E-mail: (TH); (TF)
| | - Tomoki Fukai
- Okinawa Institute of Science and Technology, Onna-son, Okinawa, Japan
- * E-mail: (TH); (TF)
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46
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Aljadeff J, Gillett M, Pereira Obilinovic U, Brunel N. From synapse to network: models of information storage and retrieval in neural circuits. Curr Opin Neurobiol 2021; 70:24-33. [PMID: 34175521 DOI: 10.1016/j.conb.2021.05.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2021] [Revised: 05/06/2021] [Accepted: 05/25/2021] [Indexed: 10/21/2022]
Abstract
The mechanisms of information storage and retrieval in brain circuits are still the subject of debate. It is widely believed that information is stored at least in part through changes in synaptic connectivity in networks that encode this information and that these changes lead in turn to modifications of network dynamics, such that the stored information can be retrieved at a later time. Here, we review recent progress in deriving synaptic plasticity rules from experimental data and in understanding how plasticity rules affect the dynamics of recurrent networks. We show that the dynamics generated by such networks exhibit a large degree of diversity, depending on parameters, similar to experimental observations in vivo during delayed response tasks.
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Affiliation(s)
- Johnatan Aljadeff
- Neurobiology Section, Division of Biological Sciences, UC San Diego, USA
| | | | | | - Nicolas Brunel
- Department of Neurobiology, Duke University, USA; Department of Physics, Duke University, USA.
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47
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Robert BJA, Moreau MM, Dos Santos Carvalho S, Barthet G, Racca C, Bhouri M, Quiedeville A, Garret M, Atchama B, Al Abed AS, Guette C, Henderson DJ, Desmedt A, Mulle C, Marighetto A, Montcouquiol M, Sans N. Vangl2 in the Dentate Network Modulates Pattern Separation and Pattern Completion. Cell Rep 2021; 31:107743. [PMID: 32521268 PMCID: PMC7296350 DOI: 10.1016/j.celrep.2020.107743] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Revised: 03/13/2020] [Accepted: 05/15/2020] [Indexed: 12/13/2022] Open
Abstract
The organization of spatial information, including pattern completion and pattern separation processes, relies on the hippocampal circuits, yet the molecular and cellular mechanisms underlying these two processes are elusive. Here, we find that loss of Vangl2, a core PCP gene, results in opposite effects on pattern completion and pattern separation processes. Mechanistically, we show that Vangl2 loss maintains young postmitotic granule cells in an immature state, providing increased cellular input for pattern separation. The genetic ablation of Vangl2 disrupts granule cell morpho-functional maturation and further prevents CaMKII and GluA1 phosphorylation, disrupting the stabilization of AMPA receptors. As a functional consequence, LTP at lateral perforant path-GC synapses is impaired, leading to defects in pattern completion behavior. In conclusion, we show that Vangl2 exerts a bimodal regulation on young and mature GCs, and its disruption leads to an imbalance in hippocampus-dependent pattern completion and separation processes. Vangl2-dependent PCP signaling controls granule cell maturation and network integration Vangl2 stabilizes GluA1-containing receptors at the surface of dendritic spines Granule cells require Vangl2-dependent signaling to elicit LTP Vangl2 loss has opposite functional effects on pattern completion/separation processes
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Affiliation(s)
- Benjamin J A Robert
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Maïté M Moreau
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Steve Dos Santos Carvalho
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Gael Barthet
- CNRS, IINS, UMR 5297, 33000 Bordeaux, France; Université Bordeaux, IINS, 33000 Bordeaux, France
| | - Claudia Racca
- Biosciences Institute, Newcastle University, Medical School, Newcastle upon Tyne, NE2 4HH, UK
| | - Mehdi Bhouri
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Anne Quiedeville
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Maurice Garret
- CNRS, INCIA, 33000 Bordeaux, France; Université Bordeaux, INCIA, 30000 Bordeaux, France
| | - Bénédicte Atchama
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Alice Shaam Al Abed
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Christelle Guette
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Deborah J Henderson
- Biosciences Institute, Newcastle University, Centre for Life, Newcastle upon Tyne, NE1 4EP, UK
| | - Aline Desmedt
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Christophe Mulle
- CNRS, IINS, UMR 5297, 33000 Bordeaux, France; Université Bordeaux, IINS, 33000 Bordeaux, France
| | - Aline Marighetto
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France
| | - Mireille Montcouquiol
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France.
| | - Nathalie Sans
- INSERM, Neurocentre Magendie, U1215, 33000 Bordeaux, France; Université Bordeaux, Neurocentre Magendie, 33000 Bordeaux, France.
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48
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Vandael D, Okamoto Y, Jonas P. Transsynaptic modulation of presynaptic short-term plasticity in hippocampal mossy fiber synapses. Nat Commun 2021; 12:2912. [PMID: 34006874 PMCID: PMC8131630 DOI: 10.1038/s41467-021-23153-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2020] [Accepted: 04/06/2021] [Indexed: 11/21/2022] Open
Abstract
The hippocampal mossy fiber synapse is a key synapse of the trisynaptic circuit. Post-tetanic potentiation (PTP) is the most powerful form of plasticity at this synaptic connection. It is widely believed that mossy fiber PTP is an entirely presynaptic phenomenon, implying that PTP induction is input-specific, and requires neither activity of multiple inputs nor stimulation of postsynaptic neurons. To directly test cooperativity and associativity, we made paired recordings between single mossy fiber terminals and postsynaptic CA3 pyramidal neurons in rat brain slices. By stimulating non-overlapping mossy fiber inputs converging onto single CA3 neurons, we confirm that PTP is input-specific and non-cooperative. Unexpectedly, mossy fiber PTP exhibits anti-associative induction properties. EPSCs show only minimal PTP after combined pre- and postsynaptic high-frequency stimulation with intact postsynaptic Ca2+ signaling, but marked PTP in the absence of postsynaptic spiking and after suppression of postsynaptic Ca2+ signaling (10 mM EGTA). PTP is largely recovered by inhibitors of voltage-gated R- and L-type Ca2+ channels, group II mGluRs, and vacuolar-type H+-ATPase, suggesting the involvement of retrograde vesicular glutamate signaling. Transsynaptic regulation of PTP extends the repertoire of synaptic computations, implementing a brake on mossy fiber detonation and a "smart teacher" function of hippocampal mossy fiber synapses.
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Affiliation(s)
- David Vandael
- Cellular Neuroscience, IST Austria (Institute of Science and Technology Austria), Klosterneuburg, Austria.
- Netherlands Institute for Neuroscience, Royal Netherlands Academy for Arts and Sciences (KNAW), Amsterdam, The Netherlands.
| | - Yuji Okamoto
- Cellular Neuroscience, IST Austria (Institute of Science and Technology Austria), Klosterneuburg, Austria
| | - Peter Jonas
- Cellular Neuroscience, IST Austria (Institute of Science and Technology Austria), Klosterneuburg, Austria.
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49
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Reifenstein ET, Bin Khalid I, Kempter R. Synaptic learning rules for sequence learning. eLife 2021; 10:e67171. [PMID: 33860763 PMCID: PMC8175084 DOI: 10.7554/elife.67171] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2021] [Accepted: 03/31/2021] [Indexed: 12/29/2022] Open
Abstract
Remembering the temporal order of a sequence of events is a task easily performed by humans in everyday life, but the underlying neuronal mechanisms are unclear. This problem is particularly intriguing as human behavior often proceeds on a time scale of seconds, which is in stark contrast to the much faster millisecond time-scale of neuronal processing in our brains. One long-held hypothesis in sequence learning suggests that a particular temporal fine-structure of neuronal activity - termed 'phase precession' - enables the compression of slow behavioral sequences down to the fast time scale of the induction of synaptic plasticity. Using mathematical analysis and computer simulations, we find that - for short enough synaptic learning windows - phase precession can improve temporal-order learning tremendously and that the asymmetric part of the synaptic learning window is essential for temporal-order learning. To test these predictions, we suggest experiments that selectively alter phase precession or the learning window and evaluate memory of temporal order.
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Affiliation(s)
- Eric Torsten Reifenstein
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu BerlinBerlinGermany
- Bernstein Center for Computational Neuroscience BerlinBerlinGermany
| | - Ikhwan Bin Khalid
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu BerlinBerlinGermany
| | - Richard Kempter
- Institute for Theoretical Biology, Department of Biology, Humboldt-Universität zu BerlinBerlinGermany
- Bernstein Center for Computational Neuroscience BerlinBerlinGermany
- Einstein Center for Neurosciences BerlinBerlinGermany
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50
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Xiao W, Shan L, Zhang H, Fu Y, Zhao Y, Yang D, Jiao C, Sun G, Wang Q, He D. High photosensitivity light-controlled planar ZnO artificial synapse for neuromorphic computing. NANOSCALE 2021; 13:2502-2510. [PMID: 33471021 DOI: 10.1039/d0nr08082a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
A light-controlled artificial synapse, which mimics the human brain has been considered to be one of the ideal candidates for the fundamental physical architecture of a neuromorphic computing system owing to the possible abilities of high bandwidth and low power calculation. However, the low photosensitivity of synapse devices can affect the accuracy of recognition and classification in neuromorphic computing tasks. In this work, a planar light-controlled artificial synapse having high photosensitivity (Ion/Ioff > 1000) with a high photocurrent and a low dark current is realized based on a ZnO thin film grown by radiofrequency sputtering. The synaptic functions of the human brain such as sensory memory, short-term memory, long-term memory, duration-time-dependent-plasticity, light-intensity-dependent-plasticity, learning-experience behavior, neural facilitation, and spike-timing-dependent plasticity are successfully emulated using persistent photoconductivity characteristic of a ZnO thin film. Furthermore, the high classification accuracy of 90%, 92%, and 86% after 40 epochs for file type datasets, small digits, and large digit is realized with a three-layer neural network based on backpropagation where the numerical weights in the network layer are mapped directly to the conductance states of the experimental synapse devices. Finally, characterization and analysis reveal that oxygen vacancy defects and chemisorbed oxygen on the surface of the ZnO film are the main factors that determine the performance of the device.
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Affiliation(s)
- Wei Xiao
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Linbo Shan
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Haitao Zhang
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Yujun Fu
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Yanfei Zhao
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Dongliang Yang
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Chaohui Jiao
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Guangzhi Sun
- Wuhan Secondary Ship Design and Research Institute, Wuhan 430064, China
| | - Qi Wang
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
| | - Deyan He
- Key Laboratory of Special Function Materials & Structure Design of the Ministry of Education, School of Physical Science & Technology, Lanzhou University, Lanzhou 730000, China.
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