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For: Irisarri I, Singh P, Koblmüller S, Torres-Dowdall J, Henning F, Franchini P, Fischer C, Lemmon AR, Lemmon EM, Thallinger GG, Sturmbauer C, Meyer A. Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes. Nat Commun 2018;9:3159. [PMID: 30089797 PMCID: PMC6082878 DOI: 10.1038/s41467-018-05479-9] [Citation(s) in RCA: 126] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2017] [Accepted: 05/30/2018] [Indexed: 11/21/2022]  Open
Number Cited by Other Article(s)
1
Behrens KA, Koblmueller S, Kocher TD. Diversity of Sex Chromosomes in Vertebrates: Six Novel Sex Chromosomes in Basal Haplochromines (Teleostei: Cichlidae). Genome Biol Evol 2024;16:evae152. [PMID: 39073759 DOI: 10.1093/gbe/evae152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/12/2024] [Indexed: 07/30/2024]  Open
2
Rick JA, Brock CD, Lewanski AL, Golcher-Benavides J, Wagner CE. Reference Genome Choice and Filtering Thresholds Jointly Influence Phylogenomic Analyses. Syst Biol 2024;73:76-101. [PMID: 37881861 DOI: 10.1093/sysbio/syad065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 09/20/2023] [Accepted: 10/20/2023] [Indexed: 10/27/2023]  Open
3
Bertinetti C, Härer A, Karagic N, Meyer A, Torres-Dowdall J. Repeated Divergence in Opsin Gene Expression Mirrors Photic Habitat Changes in Rapidly Evolving Crater Lake Cichlid Fishes. Am Nat 2024;203:604-617. [PMID: 38635367 DOI: 10.1086/729420] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/20/2024]
4
Steenwyk JL, King N. The promise and pitfalls of synteny in phylogenomics. PLoS Biol 2024;22:e3002632. [PMID: 38768403 PMCID: PMC11105162 DOI: 10.1371/journal.pbio.3002632] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2024]  Open
5
Almeida MV, Blumer M, Yuan CU, Sierra P, Price JL, Quah FX, Friman A, Dallaire A, Vernaz G, Putman ALK, Smith AM, Joyce DA, Butter F, Haase AD, Durbin R, Santos ME, Miska EA. Dynamic co-evolution of transposable elements and the piRNA pathway in African cichlid fishes. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.04.01.587621. [PMID: 38617250 PMCID: PMC11014572 DOI: 10.1101/2024.04.01.587621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
6
Wang J, Tai J, Zhang W, He K, Lan H, Liu H. Comparison of seven complete mitochondrial genomes from Lamprologus and Neolamprologus (Chordata, Teleostei, Perciformes) and the phylogenetic implications for Cichlidae. Zookeys 2023;1184:115-132. [PMID: 38314327 PMCID: PMC10838552 DOI: 10.3897/zookeys.1184.107091] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Accepted: 10/27/2023] [Indexed: 02/06/2024]  Open
7
Burress ED, Muñoz MM. Phenotypic rate and state are decoupled in response to river-to-lake transitions in cichlid fishes. Evolution 2023;77:2365-2377. [PMID: 37624672 DOI: 10.1093/evolut/qpad143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2023] [Revised: 07/10/2023] [Accepted: 08/08/2023] [Indexed: 08/27/2023]
8
Waters JM, Campbell CSM, Dutoit L. Fish biogeography and hybridization: do contemporary distributions predict introgression history? Evolution 2023;77:2409-2419. [PMID: 37587034 DOI: 10.1093/evolut/qpad147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2023] [Revised: 07/26/2023] [Accepted: 08/14/2023] [Indexed: 08/18/2023]
9
Meier JI, McGee MD, Marques DA, Mwaiko S, Kishe M, Wandera S, Neumann D, Mrosso H, Chapman LJ, Chapman CA, Kaufman L, Taabu-Munyaho A, Wagner CE, Bruggmann R, Excoffier L, Seehausen O. Cycles of fusion and fission enabled rapid parallel adaptive radiations in African cichlids. Science 2023;381:eade2833. [PMID: 37769075 DOI: 10.1126/science.ade2833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 08/21/2023] [Indexed: 09/30/2023]
10
Ricci V, Ronco F, Boileau N, Salzburger W. Visual opsin gene expression evolution in the adaptive radiation of cichlid fishes of Lake Tanganyika. SCIENCE ADVANCES 2023;9:eadg6568. [PMID: 37672578 PMCID: PMC10482347 DOI: 10.1126/sciadv.adg6568] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 08/07/2023] [Indexed: 09/08/2023]
11
Nakamura H, Aibara M, Nikaido M. Ancient standing genetic variation facilitated the adaptive radiation of Lake Victoria cichlids. Genes Genet Syst 2023;98:93-99. [PMID: 37495512 DOI: 10.1266/ggs.23-00024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]  Open
12
Roberts-Hugghis AS, Burress ED, Lam B, Wainwright PC. The cichlid pharyngeal jaw novelty enhances evolutionary integration in the feeding apparatus. Evolution 2023;77:1917-1929. [PMID: 37326103 DOI: 10.1093/evolut/qpad109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Accepted: 06/14/2023] [Indexed: 06/17/2023]
13
Kundu S, De Alwis PS, Kim AR, Lee SR, Kang HE, Go Y, Gietbong FZ, Wibowo A, Kim HW. Mitogenomic Characterization of Cameroonian Endemic Coptodon camerunensis (Cichliformes: Cichlidae) and Matrilineal Phylogeny of Old-World Cichlids. Genes (Basel) 2023;14:1591. [PMID: 37628642 PMCID: PMC10454717 DOI: 10.3390/genes14081591] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 08/02/2023] [Accepted: 08/04/2023] [Indexed: 08/27/2023]  Open
14
Yang LH, Shi XZ, Wen F, Kang M. Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae). ANNALS OF BOTANY 2023;131:953-966. [PMID: 37177810 PMCID: PMC10332401 DOI: 10.1093/aob/mcad047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 05/12/2023] [Indexed: 05/15/2023]
15
Slovák M, Melichárková A, Štubňová EG, Kučera J, Mandáková T, Smyčka J, Lavergne S, Passalacqua NG, Vďačný P, Paun O. Pervasive Introgression During Rapid Diversification of the European Mountain Genus Soldanella (L.) (Primulaceae). Syst Biol 2023;72:491-504. [PMID: 36331548 PMCID: PMC10276626 DOI: 10.1093/sysbio/syac071] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 10/26/2022] [Accepted: 10/31/2022] [Indexed: 03/19/2024]  Open
16
Lozano-Martín C, Bracamonte SE, Barluenga M. Evolution of MHC IIB Diversity Across Cichlid Fish Radiations. Genome Biol Evol 2023;15:evad110. [PMID: 37314153 PMCID: PMC10306275 DOI: 10.1093/gbe/evad110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Revised: 05/12/2023] [Accepted: 06/08/2023] [Indexed: 06/15/2023]  Open
17
Santos ME, Lopes JF, Kratochwil CF. East African cichlid fishes. EvoDevo 2023;14:1. [PMID: 36604760 PMCID: PMC9814215 DOI: 10.1186/s13227-022-00205-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2022] [Accepted: 11/29/2022] [Indexed: 01/06/2023]  Open
18
Härer A, Rennison DJ. Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis. Ecol Evol 2022;12:e9674. [PMID: 36590339 PMCID: PMC9797641 DOI: 10.1002/ece3.9674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Revised: 11/26/2022] [Accepted: 12/09/2022] [Indexed: 12/30/2022]  Open
19
Ahi EP, Richter F, Sefc KM. Gene expression patterns associated with caudal fin shape in the cichlid Lamprologus tigripictilis. HYDROBIOLOGIA 2022;850:2257-2273. [PMID: 37325486 PMCID: PMC10261199 DOI: 10.1007/s10750-022-05068-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/03/2022] [Revised: 10/12/2022] [Accepted: 10/18/2022] [Indexed: 06/17/2023]
20
Milec LJM, Vanhove MPM, Bukinga FM, De Keyzer ELR, Kapepula VL, Masilya PM, Mulimbwa N, Wagner CE, Raeymaekers JAM. Complete mitochondrial genomes and updated divergence time of the two freshwater clupeids endemic to Lake Tanganyika (Africa) suggest intralacustrine speciation. BMC Ecol Evol 2022;22:127. [PMID: 36329403 PMCID: PMC9635120 DOI: 10.1186/s12862-022-02085-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2022] [Accepted: 10/20/2022] [Indexed: 11/06/2022]  Open
21
Fuke Y, Kano Y, Tun S, Yun L, Win SS, Watanabe K. Cryptic genetic divergence of the red dwarf rasbora, Microrasbora rubescens, in and around Inle Lake: implications for the origin of endemicity in the ancient lake in Myanmar. JOURNAL OF FISH BIOLOGY 2022;101:1235-1247. [PMID: 36059127 DOI: 10.1111/jfb.15195] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2022] [Accepted: 08/09/2022] [Indexed: 06/15/2023]
22
Sex chromosomes in the tribe Cyprichromini (Teleostei: Cichlidae) of Lake Tanganyika. Sci Rep 2022;12:17998. [PMID: 36289404 PMCID: PMC9606112 DOI: 10.1038/s41598-022-23017-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2022] [Accepted: 10/21/2022] [Indexed: 01/24/2023]  Open
23
Wang X, Liang D, Wang X, Tang M, Liu Y, Liu S, Zhang P. Phylogenomics reveals the evolution, biogeography, and diversification history of voles in the Hengduan Mountains. Commun Biol 2022;5:1124. [PMID: 36284161 DOI: 10.1038/s42003-022-04108-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Accepted: 10/12/2022] [Indexed: 11/09/2022]  Open
24
Campbell CSM, Dutoit L, King TM, Craw D, Burridge CP, Wallis GP, Waters JM. Genome‐wide analysis resolves the radiation of New Zealand's freshwater Galaxias vulgaris complex and reveals a candidate species obscured by mitochondrial capture. DIVERS DISTRIB 2022. [DOI: 10.1111/ddi.13629] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
25
Lewanski AL, Golcher-Benavides J, Rick JA, Wagner CE. Variable hybridization between two Lake Tanganyikan cichlid species in recent secondary contact. Mol Ecol 2022;31:5041-5059. [PMID: 35913373 DOI: 10.1111/mec.16636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2021] [Revised: 07/22/2022] [Accepted: 07/26/2022] [Indexed: 12/01/2022]
26
Astudillo-Clavijo V, Stiassny MLJ, Ilves KL, Musilova Z, Salzburger W, López-Fernández H. Exon-based phylogenomics and the relationships of African cichlid fishes: tackling the challenges of reconstructing phylogenies with repeated rapid radiations. Syst Biol 2022;72:134-149. [PMID: 35880863 DOI: 10.1093/sysbio/syac051] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2021] [Revised: 07/06/2022] [Accepted: 07/19/2022] [Indexed: 11/13/2022]  Open
27
Three problems in the genetics of speciation by selection. Proc Natl Acad Sci U S A 2022;119:e2122153119. [PMID: 35858397 PMCID: PMC9335311 DOI: 10.1073/pnas.2122153119] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
28
Singh P, Irisarri I, Torres-Dowdall J, Thallinger GG, Svardal H, Lemmon EM, Lemmon AR, Koblmüller S, Meyer A, Sturmbauer C. Phylogenomics of trophically diverse cichlids disentangles processes driving adaptive radiation and repeated trophic transitions. Ecol Evol 2022;12:e9077. [PMID: 35866021 PMCID: PMC9288888 DOI: 10.1002/ece3.9077] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 05/28/2022] [Accepted: 05/31/2022] [Indexed: 11/12/2022]  Open
29
Interpreting phylogenetic conflict: Hybridization in the most speciose genus of lichen-forming fungi. Mol Phylogenet Evol 2022;174:107543. [PMID: 35690378 DOI: 10.1016/j.ympev.2022.107543] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Revised: 02/06/2022] [Accepted: 05/13/2022] [Indexed: 11/24/2022]
30
Nam SE, Eom HJ, Park HS, Rhee JS. Characterization and phylogenetic analysis of the complete mitochondrial genome of the rainbow krib, Pelvicachromis pulcher (Perciformes: Cichlidae). Mitochondrial DNA B Resour 2022;7:918-920. [PMID: 35692647 PMCID: PMC9176354 DOI: 10.1080/23802359.2022.2079099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
31
Patton AH, Richards EJ, Gould KJ, Buie LK, Martin CH. Hybridization alters the shape of the genotypic fitness landscape, increasing access to novel fitness peaks during adaptive radiation. eLife 2022;11:e72905. [PMID: 35616528 PMCID: PMC9135402 DOI: 10.7554/elife.72905] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2021] [Accepted: 04/14/2022] [Indexed: 12/30/2022]  Open
32
Feller AF, Seehausen O. Genetic architecture of adaptive radiation across two trophic levels. Proc Biol Sci 2022;289:20220377. [PMID: 35506225 PMCID: PMC9065965 DOI: 10.1098/rspb.2022.0377] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
33
Rahmouni C, Vanhove MPM, Šimková A, Van Steenberge M. Morphological and Genetic Divergence in a Gill Monogenean Parasitizing Distant Cichlid Lineages of Lake Tanganyika: Cichlidogyrus nshomboi (Monogenea: Dactylogyridae) from Representatives of Boulengerochromini and Perissodini. Evol Biol 2022. [DOI: 10.1007/s11692-022-09564-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
34
Gregorio Martínez J, David Rangel-Medrano J, Johanna Yepes-Acevedo A, Restrepo-Escobar N, Judith Márquez E. Species limits and introgression in Pimelodus from the Magdalena-Cauca River basin. Mol Phylogenet Evol 2022;173:107517. [DOI: 10.1016/j.ympev.2022.107517] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Revised: 03/20/2022] [Accepted: 04/05/2022] [Indexed: 11/26/2022]
35
Kocher TD, Behrens KA, Conte MA, Aibara M, Mrosso HDJ, Green ECJ, Kidd MR, Nikaido M, Koblmüller S. New Sex Chromosomes in Lake Victoria Cichlid Fishes (Cichlidae: Haplochromini). Genes (Basel) 2022;13:804. [PMID: 35627189 PMCID: PMC9141883 DOI: 10.3390/genes13050804] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2022] [Revised: 04/26/2022] [Accepted: 04/27/2022] [Indexed: 12/19/2022]  Open
36
Genetic and Epigenetic Signatures Associated with the Divergence of Aquilegia Species. Genes (Basel) 2022;13:genes13050793. [PMID: 35627179 PMCID: PMC9141525 DOI: 10.3390/genes13050793] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 04/21/2022] [Accepted: 04/27/2022] [Indexed: 11/17/2022]  Open
37
Masonick P, Meyer A, Hulsey CD. Phylogenomic analyses show repeated evolution of hypertrophied lips among Lake Malawi cichlid fishes. Genome Biol Evol 2022;14:6568296. [PMID: 35417557 PMCID: PMC9017819 DOI: 10.1093/gbe/evac051] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/03/2022] [Indexed: 11/27/2022]  Open
38
Gu Q, Wang S, Zhong H, Yuan H, Yang J, Yang C, Huang X, Xu X, Wang Y, Wei Z, Wang J, Liu S. Phylogeographic relationships and the evolutionary history of the Carassius auratus complex with a newly born homodiploid raw fish (2nNCRC). BMC Genomics 2022;23:242. [PMID: 35350975 PMCID: PMC8962218 DOI: 10.1186/s12864-022-08468-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2021] [Accepted: 03/14/2022] [Indexed: 11/10/2022]  Open
39
Wagner M, Bračun S, Duenser A, Sturmbauer C, Gessl W, Ahi EP. Expression variations in ectodysplasin-A gene (eda) may contribute to morphological divergence of scales in haplochromine cichlids. BMC Ecol Evol 2022;22:28. [PMID: 35272610 PMCID: PMC8908630 DOI: 10.1186/s12862-022-01984-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2021] [Accepted: 02/28/2022] [Indexed: 11/10/2022]  Open
40
Burress ED, Piálek L, Casciotta J, Almirón A, Říčan O. Rapid Parallel Morphological and Mechanical Diversification of South American Pike Cichlids (Crenicichla). Syst Biol 2022;72:120-133. [PMID: 35244182 DOI: 10.1093/sysbio/syac018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Revised: 02/24/2022] [Accepted: 03/01/2022] [Indexed: 11/13/2022]  Open
41
Rahmouni C, Vanhove MP, Koblmüller S, Šimková A. Molecular phylogeny and speciation patterns in host-specific monogeneans (Cichlidogyrus, Dactylogyridae) parasitizing cichlid fishes (Cichliformes, Cichlidae) in lake tanganyika. Int J Parasitol 2022;52:359-375. [DOI: 10.1016/j.ijpara.2021.12.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 12/09/2021] [Accepted: 12/15/2021] [Indexed: 12/01/2022]
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Urban S, Gerwin J, Hulsey CD, Meyer A, Kratochwil CF. The repeated evolution of stripe patterns is correlated with body morphology in the adaptive radiations of East African cichlid fishes. Ecol Evol 2022;12:e8568. [PMID: 35154652 PMCID: PMC8820146 DOI: 10.1002/ece3.8568] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Revised: 12/20/2021] [Accepted: 12/30/2021] [Indexed: 01/01/2023]  Open
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Singh P, Ahi EP. The importance of alternative splicing in adaptive evolution. Mol Ecol 2022;31:1928-1938. [DOI: 10.1111/mec.16377] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 01/06/2022] [Accepted: 01/25/2022] [Indexed: 11/26/2022]
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OUP accepted manuscript. Syst Biol 2022;71:741-757. [PMID: 35137239 PMCID: PMC9016576 DOI: 10.1093/sysbio/syac006] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2021] [Revised: 01/18/2022] [Accepted: 01/30/2022] [Indexed: 11/28/2022]  Open
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OUP accepted manuscript. Biol J Linn Soc Lond 2022. [DOI: 10.1093/biolinnean/blac041] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
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Kondo S, Watanabe M, Miyazawa S. Studies of Turing pattern formation in zebrafish skin. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2021;379:20200274. [PMID: 34743596 PMCID: PMC8580470 DOI: 10.1098/rsta.2020.0274] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 06/16/2021] [Indexed: 05/08/2023]
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Nam SE, Eom HJ, Park HS, Rhee JS. The complete mitochondrial genome of Lamprologus signatus (Perciformes: Cichlidae). Mitochondrial DNA B Resour 2021;6:3487-3489. [PMID: 34869886 PMCID: PMC8635558 DOI: 10.1080/23802359.2021.1981789] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]  Open
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Kagawa K. Toward a mechanism‐based classification of evolutionary radiations. POPUL ECOL 2021. [DOI: 10.1002/1438-390x.12101] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Choi JY, Dai X, Alam O, Peng JZ, Rughani P, Hickey S, Harrington E, Juul S, Ayroles JF, Purugganan MD, Stacy EA. Ancestral polymorphisms shape the adaptive radiation of Metrosideros across the Hawaiian Islands. Proc Natl Acad Sci U S A 2021;118:e2023801118. [PMID: 34497122 PMCID: PMC8449318 DOI: 10.1073/pnas.2023801118] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/17/2021] [Indexed: 01/05/2023]  Open
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Duchêne DA, Mather N, Van Der Wal C, Ho SYW. Excluding loci with substitution saturation improves inferences from phylogenomic data. Syst Biol 2021;71:676-689. [PMID: 34508605 PMCID: PMC9016599 DOI: 10.1093/sysbio/syab075] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Accepted: 09/07/2021] [Indexed: 11/21/2022]  Open
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