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Ting LH, Gick B, Kesar TM, Xu J. Ethnokinesiology: towards a neuromechanical understanding of cultural differences in movement. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230485. [PMID: 39155720 DOI: 10.1098/rstb.2023.0485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2023] [Revised: 05/15/2024] [Accepted: 06/18/2024] [Indexed: 08/20/2024] Open
Abstract
Each individual's movements are sculpted by constant interactions between sensorimotor and sociocultural factors. A theoretical framework grounded in motor control mechanisms articulating how sociocultural and biological signals converge to shape movement is currently missing. Here, we propose a framework for the emerging field of ethnokinesiology aiming to provide a conceptual space and vocabulary to help bring together researchers at this intersection. We offer a first-level schema for generating and testing hypotheses about cultural differences in movement to bridge gaps between the rich observations of cross-cultural movement variations and neurophysiological and biomechanical accounts of movement. We explicitly dissociate two interacting feedback loops that determine culturally relevant movement: one governing sensorimotor tasks regulated by neural signals internal to the body, the other governing ecological tasks generated through actions in the environment producing ecological consequences. A key idea is the emergence of individual-specific and culturally influenced motor concepts in the nervous system, low-dimensional functional mappings between sensorimotor and ecological task spaces. Motor accents arise from perceived differences in motor concept topologies across cultural contexts. We apply the framework to three examples: speech, gait and grasp. Finally, we discuss how ethnokinesiological studies may inform personalized motor skill training and rehabilitation, and challenges moving forward.This article is part of the theme issue 'Minds in movement: embodied cognition in the age of artificial intelligence'.
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Affiliation(s)
- Lena H Ting
- Coulter Department of Biomedical Engineering at Georgia Tech and Emory, Georgia Institute of Technology, Atlanta, GA 30332, USA
- Department of Rehabilitation Medicine, Division of Physical Therapy, Emory University, Atlanta, GA 30322, USA
| | - Bryan Gick
- Department of Linguistics, The University British Columbia, Vancouver, BC V6T 1Z4, Canada
- Haskins Laboratories, Yale University, New Haven, CT 06520, USA
| | - Trisha M Kesar
- Department of Rehabilitation Medicine, Division of Physical Therapy, Emory University, Atlanta, GA 30322, USA
| | - Jing Xu
- Department of Kinesiology, The University of Georgia, Athens, GA 30602, USA
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2
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Chiappa AS, Tano P, Patel N, Ingster A, Pouget A, Mathis A. Acquiring musculoskeletal skills with curriculum-based reinforcement learning. Neuron 2024:S0896-6273(24)00650-0. [PMID: 39357519 DOI: 10.1016/j.neuron.2024.09.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 07/29/2024] [Accepted: 09/04/2024] [Indexed: 10/04/2024]
Abstract
Efficient musculoskeletal simulators and powerful learning algorithms provide computational tools to tackle the grand challenge of understanding biological motor control. Our winning solution for the inaugural NeurIPS MyoChallenge leverages an approach mirroring human skill learning. Using a novel curriculum learning approach, we trained a recurrent neural network to control a realistic model of the human hand with 39 muscles to rotate two Baoding balls in the palm of the hand. In agreement with data from human subjects, the policy uncovers a small number of kinematic synergies, even though it is not explicitly biased toward low-dimensional solutions. However, selectively inactivating parts of the control signal, we found that more dimensions contribute to the task performance than suggested by traditional synergy analysis. Overall, our work illustrates the emerging possibilities at the interface of musculoskeletal physics engines, reinforcement learning, and neuroscience to advance our understanding of biological motor control.
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Affiliation(s)
- Alberto Silvio Chiappa
- Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland; Neuro-X Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Pablo Tano
- Department of Fundamental Neuroscience, University of Geneva, 1205 Geneva, Switzerland
| | - Nisheet Patel
- Department of Fundamental Neuroscience, University of Geneva, 1205 Geneva, Switzerland
| | - Abigaïl Ingster
- Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland; Neuro-X Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland
| | - Alexandre Pouget
- Department of Fundamental Neuroscience, University of Geneva, 1205 Geneva, Switzerland
| | - Alexander Mathis
- Brain Mind Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland; Neuro-X Institute, School of Life Sciences, École Polytechnique Fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland.
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3
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Li Y, Zhu X, Qi Y, Wang Y. Revealing unexpected complex encoding but simple decoding mechanisms in motor cortex via separating behaviorally relevant neural signals. eLife 2024; 12:RP87881. [PMID: 39120996 PMCID: PMC11315449 DOI: 10.7554/elife.87881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/11/2024] Open
Abstract
In motor cortex, behaviorally relevant neural responses are entangled with irrelevant signals, which complicates the study of encoding and decoding mechanisms. It remains unclear whether behaviorally irrelevant signals could conceal some critical truth. One solution is to accurately separate behaviorally relevant and irrelevant signals at both single-neuron and single-trial levels, but this approach remains elusive due to the unknown ground truth of behaviorally relevant signals. Therefore, we propose a framework to define, extract, and validate behaviorally relevant signals. Analyzing separated signals in three monkeys performing different reaching tasks, we found neural responses previously considered to contain little information actually encode rich behavioral information in complex nonlinear ways. These responses are critical for neuronal redundancy and reveal movement behaviors occupy a higher-dimensional neural space than previously expected. Surprisingly, when incorporating often-ignored neural dimensions, behaviorally relevant signals can be decoded linearly with comparable performance to nonlinear decoding, suggesting linear readout may be performed in motor cortex. Our findings prompt that separating behaviorally relevant signals may help uncover more hidden cortical mechanisms.
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Affiliation(s)
- Yangang Li
- Qiushi Academy for Advanced Studies, Zhejiang UniversityHangzhouChina
- Nanhu Brain-Computer Interface InstituteHangzhouChina
- College of Computer Science and Technology, Zhejiang UniversityHangzhouChina
- The State Key Lab of Brain-Machine Intelligence, Zhejiang UniversityHangzhouChina
| | - Xinyun Zhu
- Qiushi Academy for Advanced Studies, Zhejiang UniversityHangzhouChina
- Nanhu Brain-Computer Interface InstituteHangzhouChina
- College of Computer Science and Technology, Zhejiang UniversityHangzhouChina
- The State Key Lab of Brain-Machine Intelligence, Zhejiang UniversityHangzhouChina
| | - Yu Qi
- Nanhu Brain-Computer Interface InstituteHangzhouChina
- College of Computer Science and Technology, Zhejiang UniversityHangzhouChina
- The State Key Lab of Brain-Machine Intelligence, Zhejiang UniversityHangzhouChina
- Affiliated Mental Health Center & Hangzhou Seventh People’s Hospital and the MOE Frontier Science Center for Brain Science and Brain-Machine Integration, Zhejiang University School of MedicineHangzhouChina
| | - Yueming Wang
- Qiushi Academy for Advanced Studies, Zhejiang UniversityHangzhouChina
- Nanhu Brain-Computer Interface InstituteHangzhouChina
- College of Computer Science and Technology, Zhejiang UniversityHangzhouChina
- The State Key Lab of Brain-Machine Intelligence, Zhejiang UniversityHangzhouChina
- Affiliated Mental Health Center & Hangzhou Seventh People’s Hospital and the MOE Frontier Science Center for Brain Science and Brain-Machine Integration, Zhejiang University School of MedicineHangzhouChina
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4
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Bigand F, Bianco R, Abalde SF, Novembre G. The geometry of interpersonal synchrony in human dance. Curr Biol 2024; 34:3011-3019.e4. [PMID: 38908371 PMCID: PMC11266842 DOI: 10.1016/j.cub.2024.05.055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Revised: 05/01/2024] [Accepted: 05/24/2024] [Indexed: 06/24/2024]
Abstract
Collective synchronized behavior has powerful social-communicative functions observed across several animal taxa.1,2,3,4,5,6,7 Operationally, synchronized behavior can be explained by individuals responding to shared external cues (e.g., light, sound, or food) as well as by inter-individual adaptation.3,8,9,10,11 We contrasted these accounts in the context of a universal human practice-collective dance-by recording full-body kinematics from dyads of laypersons freely dancing to music in a "silent disco" setting. We orthogonally manipulated musical input (whether participants were dancing to the same, synchronous music) and visual contact (whether participants could see their dancing partner). Using a data-driven method, we decomposed full-body kinematics of 70 participants into 15 principal movement patterns, reminiscent of common dance moves, explaining over 95% of kinematic variance. We find that both music and partners drive synchrony, but through distinct dance moves. This leads to distinct kinds of synchrony that occur in parallel by virtue of a geometric organization: anteroposterior movements such as head bobs synchronize through music, while hand gestures and full-body lateral movements synchronize through visual contact. One specific dance move-vertical bounce-emerged as a supramodal pacesetter of coordination, synchronizing through both music and visual contact, and at the pace of the musical beat. These findings reveal that synchrony in human dance is independently supported by shared musical input and inter-individual adaptation. The independence between these drivers of synchrony hinges on a geometric organization, enabling dancers to synchronize to music and partners simultaneously by allocating distinct synchronies to distinct spatial axes and body parts.
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Affiliation(s)
- Félix Bigand
- Neuroscience of Perception & Action Lab, Italian Institute of Technology, Viale Regina Elena 291, 00161 Rome, Italy.
| | - Roberta Bianco
- Neuroscience of Perception & Action Lab, Italian Institute of Technology, Viale Regina Elena 291, 00161 Rome, Italy
| | - Sara F Abalde
- Neuroscience of Perception & Action Lab, Italian Institute of Technology, Viale Regina Elena 291, 00161 Rome, Italy; The Open University Affiliated Research Centre, Istituto Italiano di Tecnologia, Genova, Italy
| | - Giacomo Novembre
- Neuroscience of Perception & Action Lab, Italian Institute of Technology, Viale Regina Elena 291, 00161 Rome, Italy.
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Biderman D, Whiteway MR, Hurwitz C, Greenspan N, Lee RS, Vishnubhotla A, Warren R, Pedraja F, Noone D, Schartner MM, Huntenburg JM, Khanal A, Meijer GT, Noel JP, Pan-Vazquez A, Socha KZ, Urai AE, Cunningham JP, Sawtell NB, Paninski L. Lightning Pose: improved animal pose estimation via semi-supervised learning, Bayesian ensembling and cloud-native open-source tools. Nat Methods 2024; 21:1316-1328. [PMID: 38918605 DOI: 10.1038/s41592-024-02319-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2023] [Accepted: 05/17/2024] [Indexed: 06/27/2024]
Abstract
Contemporary pose estimation methods enable precise measurements of behavior via supervised deep learning with hand-labeled video frames. Although effective in many cases, the supervised approach requires extensive labeling and often produces outputs that are unreliable for downstream analyses. Here, we introduce 'Lightning Pose', an efficient pose estimation package with three algorithmic contributions. First, in addition to training on a few labeled video frames, we use many unlabeled videos and penalize the network whenever its predictions violate motion continuity, multiple-view geometry and posture plausibility (semi-supervised learning). Second, we introduce a network architecture that resolves occlusions by predicting pose on any given frame using surrounding unlabeled frames. Third, we refine the pose predictions post hoc by combining ensembling and Kalman smoothing. Together, these components render pose trajectories more accurate and scientifically usable. We released a cloud application that allows users to label data, train networks and process new videos directly from the browser.
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Affiliation(s)
| | | | | | | | | | | | | | | | | | | | | | - Anup Khanal
- University of California, Los Angeles, Los Angeles, CA, USA
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Tanzarella S, Di Domenico D, Forsiuk I, Boccardo N, Chiappalone M, Bartolozzi C, Semprini M. Arm muscle synergies enhance hand posture prediction in combination with forearm muscle synergies. J Neural Eng 2024; 21:026043. [PMID: 38547534 DOI: 10.1088/1741-2552/ad38dd] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Accepted: 03/28/2024] [Indexed: 04/16/2024]
Abstract
Objective.We analyze and interpret arm and forearm muscle activity in relation with the kinematics of hand pre-shaping during reaching and grasping from the perspective of human synergistic motor control.Approach.Ten subjects performed six tasks involving reaching, grasping and object manipulation. We recorded electromyographic (EMG) signals from arm and forearm muscles with a mix of bipolar electrodes and high-density grids of electrodes. Motion capture was concurrently recorded to estimate hand kinematics. Muscle synergies were extracted separately for arm and forearm muscles, and postural synergies were extracted from hand joint angles. We assessed whether activation coefficients of postural synergies positively correlate with and can be regressed from activation coefficients of muscle synergies. Each type of synergies was clustered across subjects.Main results.We found consistency of the identified synergies across subjects, and we functionally evaluated synergy clusters computed across subjects to identify synergies representative of all subjects. We found a positive correlation between pairs of activation coefficients of muscle and postural synergies with important functional implications. We demonstrated a significant positive contribution in the combination between arm and forearm muscle synergies in estimating hand postural synergies with respect to estimation based on muscle synergies of only one body segment, either arm or forearm (p< 0.01). We found that dimensionality reduction of multi-muscle EMG root mean square (RMS) signals did not significantly affect hand posture estimation, as demonstrated by comparable results with regression of hand angles from EMG RMS signals.Significance.We demonstrated that hand posture prediction improves by combining activity of arm and forearm muscles and we evaluate, for the first time, correlation and regression between activation coefficients of arm muscle and hand postural synergies. Our findings can be beneficial for myoelectric control of hand prosthesis and upper-limb exoskeletons, and for biomarker evaluation during neurorehabilitation.
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Affiliation(s)
- Simone Tanzarella
- Event-Driven Perception, Italian Institute of Technology, Via San Quirico, 19, 16163 Genova, GE, Italy
| | - Dario Di Domenico
- Rehab Technologies Lab, Italian Institute of Technology, Via Morego, 30, 16163 Genova, GE, Italy
- Department of Electronics and Telecommunications, Politecnico di Torino, Turin 10124, Italy
| | - Inna Forsiuk
- Rehab Technologies Lab, Italian Institute of Technology, Via Morego, 30, 16163 Genova, GE, Italy
| | - Nicolò Boccardo
- Rehab Technologies Lab, Italian Institute of Technology, Via Morego, 30, 16163 Genova, GE, Italy
- Open University Affiliated Research Centre at Istituto Italiano di Tecnologia (ARC@IIT), Genova, Italy
| | - Michela Chiappalone
- Rehab Technologies Lab, Italian Institute of Technology, Via Morego, 30, 16163 Genova, GE, Italy
- Bioengineering Lab, University of Genova, DIBRIS, Genova, Italy
| | - Chiara Bartolozzi
- Event-Driven Perception, Italian Institute of Technology, Via San Quirico, 19, 16163 Genova, GE, Italy
| | - Marianna Semprini
- Rehab Technologies Lab, Italian Institute of Technology, Via Morego, 30, 16163 Genova, GE, Italy
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Nonaka T, Gandon E, Endler JA, Coyle T, Bootsma RJ. Cultural attraction in pottery practice: Group-specific shape transformations by potters from three communities. PNAS NEXUS 2024; 3:pgae055. [PMID: 38415220 PMCID: PMC10898857 DOI: 10.1093/pnasnexus/pgae055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 01/25/2024] [Indexed: 02/29/2024]
Abstract
Pottery is a quintessential indicator of human cultural dynamics. Cultural alignment of behavioral repertoires and artifacts has been considered to rest upon two distinct dynamics: selective transmission of information and culture-specific biased transformation. In a cross-cultural field experiment, we tested whether community-specific morphological features of ceramic vessels would arise when the same unfamiliar shapes were reproduced by professional potters from three different communities who threw vessels using wheels. We analyzed the details of the underlying morphogenesis development of vessels in wheel throwing. When expert potters from three different communities of practice were instructed to faithfully reproduce common unfamiliar model shapes that were not parts of the daily repertoires, the morphometric variation in the final shape was not random; rather, different potters produced vessels with more morphometric variation among than within communities, indicating the presence of community-specific deviations of morphological features of vessels. Furthermore, this was found both in the final shape and in the underlying process of morphogenesis; there was more variation in the morphogenetic path among than within communities. These results suggest that the morphological features of ceramic vessels produced by potters reliably and nonrandomly diverge among different communities. The present study provides empirical evidence that collective alignment of morphological features of ceramic vessels can arise from the community-specific habits of fashioning clay.
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Affiliation(s)
- Tetsushi Nonaka
- Graduate School of Human Development and Environment, Kobe University, Kobe 657-8501, Japan
| | - Enora Gandon
- Institute of Archaeology, University College London, London WC1H 0PY, UK
| | - John A Endler
- Centre for Integrative Ecology, School of Life and Environmental Sciences, Deakin University, Waurn Ponds, VIC 3216, Australia
- College of Science & Engineering, James Cook University, Cairns, QLD 4878, Australia
| | - Thelma Coyle
- Institute of Movement Sciences, Aix Marseille University, CNRS, F-13288 Marseille cedex 09, France
| | - Reinoud J Bootsma
- Institute of Movement Sciences, Aix Marseille University, CNRS, F-13288 Marseille cedex 09, France
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Wu H, Sun W, Cheng G, Zheng M, Zhao Y, Cao Z. Human Mesenchymal Stem Cells Improve Angiogenesis and Bone Formation in Severed Finger Rats through SIRT1/Nrf2 Signaling. Curr Stem Cell Res Ther 2024; 19:389-399. [PMID: 37183461 DOI: 10.2174/1574888x18666230512112735] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 03/15/2023] [Accepted: 03/20/2023] [Indexed: 05/16/2023]
Abstract
BACKGROUND This study employed a severed finger rat model to analyze the effects of human mesenchymal stem cells (MSCs) on angiogenesis, inflammatory response, apoptosis, and oxidative stress, to evaluate the possible mechanism of the repair effect of MSCs on severed finger (SF) rats. METHODS Sixty Sprague-Dawley (SD) rats were categorized into five groups (n = 12). The pathological changes of severed finger tissues were investigated by Hematoxylin and eosin (H&E) staining on day 14 after the rats were sacrificed. The levels of inflammatory factors and oxidative stress factors were detected by ELISA. Terminal Deoxynucleotidyl Transferase (TdT) dUTP Nick End Labeling (TUNEL) was employed to assess the apoptosis of chondrocytes in severed finger tissues. The expression of osteocalcin (OCN), osteopontin (OPN), Collagen I (Col-1), and CD31 were detected by immunohistochemistry or immunofluorescence assay, respectively. The expression levels of related proteins were determined by western blot. RESULT Our study presented evidence that MSCs treatment improved pathological changes of skin and bone tissue, diminished the inflammatory response, prevented oxidative stress injury, suppressed chondrocyte apoptosis, and promoted angiogenesis, and bone formation compared to the model group. In addition, EX527 treatment attenuated the effect of MSCs, SRT1720 and ML385 co-treatment also attenuated the effect of MSCs. Importantly, the MSCs treatment increased the expression of Sirtuin 1(SIRT1)/Nuclear factor erythroid2-related factor 2(Nrf2) relate proteins. CONCLUSION Our study indicated that the mechanism of the effect of MSCs on a severed finger was related to the SIRT1/ Nrf2 signaling pathway.
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Affiliation(s)
- Hao Wu
- Department of Sports Medicine, Yantaishan Hospital, 264003, Yantai, Shandong, China
| | - Weixue Sun
- Department of Arthrology Surgery, Yantai Yuhuangding Hospital, 264000, Yantai, Shandong, China
| | - Gong Cheng
- Department of Sports Medicine, Yantaishan Hospital, 264003, Yantai, Shandong, China
| | - Mingdi Zheng
- Department of Sports Medicine, Yantaishan Hospital, 264003, Yantai, Shandong, China
| | - Yuchi Zhao
- Department of Articulation Surgery, Yantaishan Hospital, 264003, Yantai, Shandong, China
| | - Zhilin Cao
- Department of Sports Medicine, Yantaishan Hospital, 264003, Yantai, Shandong, China
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Shenoy P, Gupta A, S K M V. Comparison of synergy patterns between the right and left hand while performing postures and object grasps. Sci Rep 2023; 13:20290. [PMID: 37985707 PMCID: PMC10662439 DOI: 10.1038/s41598-023-47620-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2023] [Accepted: 11/16/2023] [Indexed: 11/22/2023] Open
Abstract
The human hand, with many degrees of freedom, serves as an excellent tool for dexterous manipulation. Previous research has demonstrated that there exists a lower-dimensional subspace that synergistically controls the full hand kinematics. The elements of this subspace, also called synergies, have been viewed as the strategy developed by the CNS in the control of finger movements. Considering that the control of fingers is lateralized to the contralateral hemisphere, how the synergies differ for the control of the dominant and the non-dominant hand has not been widely addressed. In this paper, hand kinematics was recorded using electromagnetic tracking system sensors as participants made various postures and object grasps with their dominant hand and non-dominant hand separately. Synergies that explain 90% of variance in data of both hands were analyzed for similarity at the individual level as well as at the population level. The results showed no differences in synergies between the hands at both these levels. PC scores and cross-reconstruction errors were analyzed to further support the prevalence of similarity between the synergies of the hands. Future work is proposed, and implications of the results to the treatment and diagnosis of neuromotor disorders are discussed.
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Affiliation(s)
- Prajwal Shenoy
- Department of Mechatronics Engineering, Manipal Institute of Technology, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India
- Department of Applied Mechanics and Biomedical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu, 600036, India
| | - Anurag Gupta
- Department of Applied Mechanics and Biomedical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu, 600036, India
| | - Varadhan S K M
- Department of Applied Mechanics and Biomedical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu, 600036, India.
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Chu D, Sun B, Cai J, Zhang J, Ma J, Xiong C. Decomposition and Reconstruction of Human Palm Movements. IEEE Trans Biomed Eng 2023; 70:3093-3104. [PMID: 37192037 DOI: 10.1109/tbme.2023.3276079] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
OBJECTIVE The human hand is known to have excellent manipulation ability compared to other primate hands. Without the palm movements, the human hand would lose more than 40% of its functions. However, uncovering the constitution of palm movements is still a challenging problem involving kinesiology, physiology, and engineering science. METHODS By recording the palm joint angles during common grasping, gesturing, and manipulation tasks, we built a palm kinematic dataset. Then, a method for extracting the eigen-movements to characterize the common motion correlation relationships of palm joints was proposed to explore the palm movement constitution. RESULTS This study revealed a palm kinematic characteristic that we named the joint motion grouping coupling characteristic. During natural palm movements, there are several joint groups with a high degree of motor independence, while the movements of joints within each joint group are interdependent. Based on these characteristics, the palm movements can be decomposed into seven eigen-movements. The linear combinations of these eigen-movements can reconstruct more than 90% of palm movement ability. Moreover, combined with the palm musculoskeletal structures, we found that the revealed eigen-movements are associated with joint groups that are defined by muscular functions, which provided a meaningful context for palm movement decomposition. CONCLUSION This paper suggests that some invariable characteristics underlie the variable palm motor behaviors and can be used to simplify palm movement generation. SIGNIFICANCE This paper provides important insights into palm kinematics, and helps facilitate motor function assessment and the development of better artificial hands.
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Xu J, Ma T, Kumar S, Olds K, Brown J, Carducci J, Forrence A, Krakauer J. Loss of finger control complexity and intrusion of flexor biases are dissociable in finger individuation impairment after stroke. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.29.555444. [PMID: 37693573 PMCID: PMC10491249 DOI: 10.1101/2023.08.29.555444] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/12/2023]
Abstract
The ability to control each finger independently is an essential component of human hand dexterity. A common observation of hand function impairment after stroke is the loss of this finger individuation ability, often referred to as enslavement, i.e., the unwanted coactivation of non-intended fingers in individuated finger movements. In the previous literature, this impairment has been attributed to several factors, such as the loss of corticospinal drive, an intrusion of flexor synergy due to upregulations of the subcortical pathways, and/or biomechanical constraints. These factors may or may not be mutually exclusive and are often difficult to tease apart. It has also been suggested, based on a prevailing impression, that the intrusion of flexor synergy appears to be an exaggerated pattern of the involuntary coactivations of task-irrelevant fingers seen in a healthy hand, often referred to as a flexor bias. Most previous studies, however, were based on assessments of enslavement in a single dimension (i.e., finger flexion/extension) that coincide with the flexor bias, making it difficult to tease apart the other aforementioned factors. Here, we set out to closely examine the nature of individuated finger control and finger coactivation patterns in all dimensions. Using a novel measurement device and a 3D finger-individuation paradigm, we aim to tease apart the contributions of lower biomechanical, subcortical constraints, and top-down cortical control to these patterns in both healthy and stroke hands. For the first time, we assessed all five fingers' full capacity for individuation. Our results show that these patterns in the healthy and paretic hands present distinctly different shapes and magnitudes that are not influenced by biomechanical constraints. Those in the healthy hand presented larger angular distances that were dependent on top-down task goals, whereas those in the paretic hand presented larger Euclidean distances that arise from two dissociable factors: a loss of complexity in finger control and the dominance of an intrusion of flexor bias. These results suggest that finger individuation impairment after stroke is due to two dissociable factors: the loss of finger control complexity present in the healthy hand reflecting a top-down neural control strategy and an intrusion of flexor bias likely due to an upregulation of subcortical pathways. Our device and paradigm are demonstrated to be a promising tool to assess all aspects of the dexterous capacity of the hand.
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Affiliation(s)
- Jing Xu
- Department of Kinesiology, University of Georgia, Athens, GA, USA
- The Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, USA
| | - Timothy Ma
- The Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, USA
- Center for Neural Science, New York University, New York, NY, USA
| | - Sapna Kumar
- The Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, USA
- Moss Rehabilitation Research Institute, Elkins Park, PA, USA
| | - Kevin Olds
- Department of Neurology, Johns Hopkins University, Baltimore, MD, USA
| | - Jeremy Brown
- The Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, USA
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Jacob Carducci
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD, USA
| | - Alex Forrence
- Department of Neurology, Johns Hopkins University, Baltimore, MD, USA
- Department of Psychology, Yale University, New Haven, NJ, USA
| | - John Krakauer
- The Malone Center for Engineering in Healthcare, Johns Hopkins University, Baltimore, MD, USA
- Department of Neurology, Johns Hopkins University, Baltimore, MD, USA
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Mulla DM, Keir PJ. Neuromuscular control: from a biomechanist's perspective. Front Sports Act Living 2023; 5:1217009. [PMID: 37476161 PMCID: PMC10355330 DOI: 10.3389/fspor.2023.1217009] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 06/21/2023] [Indexed: 07/22/2023] Open
Abstract
Understanding neural control of movement necessitates a collaborative approach between many disciplines, including biomechanics, neuroscience, and motor control. Biomechanics grounds us to the laws of physics that our musculoskeletal system must obey. Neuroscience reveals the inner workings of our nervous system that functions to control our body. Motor control investigates the coordinated motor behaviours we display when interacting with our environment. The combined efforts across the many disciplines aimed at understanding human movement has resulted in a rich and rapidly growing body of literature overflowing with theories, models, and experimental paradigms. As a result, gathering knowledge and drawing connections between the overlapping but seemingly disparate fields can be an overwhelming endeavour. This review paper evolved as a need for us to learn of the diverse perspectives underlying current understanding of neuromuscular control. The purpose of our review paper is to integrate ideas from biomechanics, neuroscience, and motor control to better understand how we voluntarily control our muscles. As biomechanists, we approach this paper starting from a biomechanical modelling framework. We first define the theoretical solutions (i.e., muscle activity patterns) that an individual could feasibly use to complete a motor task. The theoretical solutions will be compared to experimental findings and reveal that individuals display structured muscle activity patterns that do not span the entire theoretical solution space. Prevalent neuromuscular control theories will be discussed in length, highlighting optimality, probabilistic principles, and neuromechanical constraints, that may guide individuals to families of muscle activity solutions within what is theoretically possible. Our intention is for this paper to serve as a primer for the neuromuscular control scientific community by introducing and integrating many of the ideas common across disciplines today, as well as inspire future work to improve the representation of neural control in biomechanical models.
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13
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Sili D, De Giorgi C, Pizzuti A, Spezialetti M, de Pasquale F, Betti V. The spatio-temporal architecture of everyday manual behavior. Sci Rep 2023; 13:9451. [PMID: 37296243 PMCID: PMC10256758 DOI: 10.1038/s41598-023-36280-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Accepted: 05/31/2023] [Indexed: 06/12/2023] Open
Abstract
In everyday activities, humans move alike to manipulate objects. Prior works suggest that hand movements are built by a limited set of basic building blocks consisting of a set of common postures. However, how the low dimensionality of hand movements supports the adaptability and flexibility of natural behavior is unknown. Through a sensorized glove, we collected kinematics data from thirty-six participants preparing and having breakfast in naturalistic conditions. By means of an unbiased analysis, we identified a repertoire of hand states. Then, we tracked their transitions over time. We found that manual behavior can be described in space through a complex organization of basic configurations. These, even in an unconstrained experiment, recurred across subjects. A specific temporal structure, highly consistent within the sample, seems to integrate such identified hand shapes to realize skilled movements. These findings suggest that the simplification of the motor commands unravels in the temporal dimension more than in the spatial one.
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Affiliation(s)
- Daniele Sili
- Department of Psychology, Sapienza University of Rome, Roma, Italy
- IRCCS Fondazione Santa Lucia, Roma, Italy
| | - Chiara De Giorgi
- Department of Psychology, Sapienza University of Rome, Roma, Italy
- IRCCS Fondazione Santa Lucia, Roma, Italy
| | - Alessandra Pizzuti
- Department of Psychology, Sapienza University of Rome, Roma, Italy
- IRCCS Fondazione Santa Lucia, Roma, Italy
| | - Matteo Spezialetti
- Department of Psychology, Sapienza University of Rome, Roma, Italy
- IRCCS Fondazione Santa Lucia, Roma, Italy
| | | | - Viviana Betti
- Department of Psychology, Sapienza University of Rome, Roma, Italy.
- IRCCS Fondazione Santa Lucia, Roma, Italy.
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14
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Guan C, Aflalo T, Kadlec K, Gámez de Leon J, Rosario ER, Bari A, Pouratian N, Andersen RA. Decoding and geometry of ten finger movements in human posterior parietal cortex and motor cortex. J Neural Eng 2023; 20:036020. [PMID: 37160127 PMCID: PMC10209510 DOI: 10.1088/1741-2552/acd3b1] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2022] [Revised: 03/24/2023] [Accepted: 05/09/2023] [Indexed: 05/11/2023]
Abstract
Objective. Enable neural control of individual prosthetic fingers for participants with upper-limb paralysis.Approach. Two tetraplegic participants were each implanted with a 96-channel array in the left posterior parietal cortex (PPC). One of the participants was additionally implanted with a 96-channel array near the hand knob of the left motor cortex (MC). Across tens of sessions, we recorded neural activity while the participants attempted to move individual fingers of the right hand. Offline, we classified attempted finger movements from neural firing rates using linear discriminant analysis with cross-validation. The participants then used the neural classifier online to control individual fingers of a brain-machine interface (BMI). Finally, we characterized the neural representational geometry during individual finger movements of both hands.Main Results. The two participants achieved 86% and 92% online accuracy during BMI control of the contralateral fingers (chance = 17%). Offline, a linear decoder achieved ten-finger decoding accuracies of 70% and 66% using respective PPC recordings and 75% using MC recordings (chance = 10%). In MC and in one PPC array, a factorized code linked corresponding finger movements of the contralateral and ipsilateral hands.Significance. This is the first study to decode both contralateral and ipsilateral finger movements from PPC. Online BMI control of contralateral fingers exceeded that of previous finger BMIs. PPC and MC signals can be used to control individual prosthetic fingers, which may contribute to a hand restoration strategy for people with tetraplegia.
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Affiliation(s)
- Charles Guan
- California Institute of Technology, Pasadena, CA, United States of America
| | - Tyson Aflalo
- California Institute of Technology, Pasadena, CA, United States of America
- T&C Chen Brain-Machine Interface Center at Caltech, Pasadena, CA, United States of America
| | - Kelly Kadlec
- California Institute of Technology, Pasadena, CA, United States of America
| | | | - Emily R Rosario
- Casa Colina Hospital and Centers for Healthcare, Pomona, CA, United States of America
| | - Ausaf Bari
- David Geffen School of Medicine at UCLA, Los Angeles, CA, United States of America
| | - Nader Pouratian
- University of Texas Southwestern Medical Center, Dallas, TX, United States of America
| | - Richard A Andersen
- California Institute of Technology, Pasadena, CA, United States of America
- T&C Chen Brain-Machine Interface Center at Caltech, Pasadena, CA, United States of America
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15
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Laurence-Chasen JD, Ross CF, Arce-McShane FI, Hatsopoulos NG. Robust cortical encoding of 3D tongue shape during feeding in macaques. Nat Commun 2023; 14:2991. [PMID: 37225708 PMCID: PMC10209084 DOI: 10.1038/s41467-023-38586-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 05/08/2023] [Indexed: 05/26/2023] Open
Abstract
Dexterous tongue deformation underlies eating, drinking, and speaking. The orofacial sensorimotor cortex has been implicated in the control of coordinated tongue kinematics, but little is known about how the brain encodes-and ultimately drives-the tongue's 3D, soft-body deformation. Here we combine a biplanar x-ray video technology, multi-electrode cortical recordings, and machine-learning-based decoding to explore the cortical representation of lingual deformation. We trained long short-term memory (LSTM) neural networks to decode various aspects of intraoral tongue deformation from cortical activity during feeding in male Rhesus monkeys. We show that both lingual movements and complex lingual shapes across a range of feeding behaviors could be decoded with high accuracy, and that the distribution of deformation-related information across cortical regions was consistent with previous studies of the arm and hand.
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Affiliation(s)
- Jeffrey D Laurence-Chasen
- Department of Organismal Biology and Anatomy, The University of Chicago, 1027 E 57th Street, Chicago, IL, 60637, USA.
| | - Callum F Ross
- Department of Organismal Biology and Anatomy, The University of Chicago, 1027 E 57th Street, Chicago, IL, 60637, USA
| | - Fritzie I Arce-McShane
- Department of Oral Health Sciences, School of Dentistry, University of Washington, 1959 NE Pacific Street, Box #357475, Seattle, WA, 98195-7475, USA
- Graduate Program in Neuroscience, University of Washington, 1959 NE Pacific St., Seattle, WA, 98195-7475, USA
| | - Nicholas G Hatsopoulos
- Department of Organismal Biology and Anatomy, The University of Chicago, 1027 E 57th Street, Chicago, IL, 60637, USA
- Program in Computational Neuroscience, The University of Chicago, 5812 South Ellis Avenue, Chicago, IL, 60637, USA
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16
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High intra-task and low inter-task correlations of motor skills in humans creates an individualized behavioural pattern. Sci Rep 2022; 12:20156. [PMID: 36418339 PMCID: PMC9684559 DOI: 10.1038/s41598-022-24479-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Accepted: 11/16/2022] [Indexed: 11/25/2022] Open
Abstract
Our motor system allows us to generate an enormous breadth of voluntary actions, but it remains unclear whether and how much motor skill translates across tasks. For example, if an individual is good at gross motor control, are they also good at fine motor control? Previous research about the generalization across motor skills has been equivocal. Here, we compare human performance across five different motor skills. High correlation between task measures would suggest a certain level of underlying sensorimotor ability that dictates performance across all task types. Low correlation would suggest specificity in abilities across tasks. Performance on a reaching task, an object-hitting task, a bimanual coordination task, a rapid motion task and a target tracking task, was examined twice in a cohort of 25 healthy individuals. Across the cohort, we found relatively high correlations for different spatial and temporal parameters within a given task (16-53% of possible parameter pairs were significantly correlated, with significant r values ranging from 0.53 to 0.97) but relatively low correlations across different tasks (2.7-4.4% of possible parameter pairs were significantly correlated, with significant r values ranging from 0.53-0.71). We performed a cluster analysis across all individuals using 76 performance measures across all tasks for the two repeat testing sessions and demonstrated that repeat tests were commonly grouped together (16 of 25 pairs were grouped next to each other). These results highlight that individuals have different abilities across motor tasks, and that these patterns are consistent across time points.
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17
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Cohen Y, Engel TA, Langdon C, Lindsay GW, Ott T, Peters MAK, Shine JM, Breton-Provencher V, Ramaswamy S. Recent Advances at the Interface of Neuroscience and Artificial Neural Networks. J Neurosci 2022; 42:8514-8523. [PMID: 36351830 PMCID: PMC9665920 DOI: 10.1523/jneurosci.1503-22.2022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 09/30/2022] [Accepted: 10/03/2022] [Indexed: 11/17/2022] Open
Abstract
Biological neural networks adapt and learn in diverse behavioral contexts. Artificial neural networks (ANNs) have exploited biological properties to solve complex problems. However, despite their effectiveness for specific tasks, ANNs are yet to realize the flexibility and adaptability of biological cognition. This review highlights recent advances in computational and experimental research to advance our understanding of biological and artificial intelligence. In particular, we discuss critical mechanisms from the cellular, systems, and cognitive neuroscience fields that have contributed to refining the architecture and training algorithms of ANNs. Additionally, we discuss how recent work used ANNs to understand complex neuronal correlates of cognition and to process high throughput behavioral data.
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Affiliation(s)
- Yarden Cohen
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Tatiana A Engel
- Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, NY 11724
| | | | - Grace W Lindsay
- Department of Psychology, Center for Data Science, New York University, New York, NY 10003
| | - Torben Ott
- Bernstein Center for Computational Neuroscience Berlin, Institute of Biology, Humboldt University of Berlin, 10117, Berlin, Germany
| | - Megan A K Peters
- Department of Cognitive Sciences, University of California-Irvine, Irvine, CA 92697
| | - James M Shine
- Brain and Mind Centre, University of Sydney, Sydney, NSW 2006, Australia
| | | | - Srikanth Ramaswamy
- Biosciences Institute, Newcastle University, Newcastle upon Tyne, NE2 4HH, United Kingdom
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18
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Keogh C, FitzGerald JJ. Decomposition into dynamic features reveals a conserved temporal structure in hand kinematics. iScience 2022; 25:105428. [PMID: 36388974 PMCID: PMC9641230 DOI: 10.1016/j.isci.2022.105428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2022] [Revised: 09/01/2022] [Accepted: 10/19/2022] [Indexed: 11/06/2022] Open
Abstract
The human hand is a unique and highly complex effector. The ability to describe hand kinematics with a small number of features suggests that complex hand movements are composed of combinations of simpler movements. This would greatly simplify the neural control of hand movements. If such movement primitives exist, a dimensionality reduction approach designed to exploit these features should outperform existing methods. We developed a deep neural network to capture the temporal dynamics of movements and demonstrate that the features learned allow accurate representation of functional hand movements using lower-dimensional representations than previously reported. We show that these temporal features are highly conserved across individuals and can interpolate previously unseen movements, indicating that they capture the intrinsic structure of hand movements. These results indicate that functional hand movements are defined by a low-dimensional basis set of movement primitives with important temporal dynamics and that these features are common across individuals. Hand movements are comprised of a low-dimensional set of movement primitives Primitive movements have an important temporal component Spatiotemporal movement primitives are conserved across individuals New complex movements can be flexibly reconstructed using these primitives
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19
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Inoue M, Furuki D, Takiyama K. Detecting task-relevant spatiotemporal modules and their relation to motor adaptation. PLoS One 2022; 17:e0275820. [PMID: 36206279 PMCID: PMC9543959 DOI: 10.1371/journal.pone.0275820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 09/25/2022] [Indexed: 11/16/2022] Open
Abstract
How does the central nervous system (CNS) control our bodies, including hundreds of degrees of freedom (DoFs)? A hypothesis to reduce the number of DoFs posits that the CNS controls groups of joints or muscles (i.e., modules) rather than each joint or muscle independently. Another hypothesis posits that the CNS primarily controls motion components relevant to task achievements (i.e., task-relevant components). Although the two hypotheses are examined intensively, the relationship between the two concepts remains unknown, e.g., unimportant modules may possess task-relevant information. Here, we propose a framework of task-relevant modules, i.e., modules relevant to task achievements, while combining the two concepts mentioned above in a data-driven manner. To examine the possible role of the task-relevant modules, we examined the modulation of the task-relevant modules in a motor adaptation paradigm in which trial-to-trial modifications of motor output are observable. The task-relevant modules, rather than conventional modules, showed adaptation-dependent modulations, indicating the relevance of task-relevant modules to trial-to-trial updates of motor output. Our method provides insight into motor control and adaptation via an integrated framework of modules and task-relevant components.
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Affiliation(s)
- Masato Inoue
- Department of Electrical Engineering and Computer Science, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Daisuke Furuki
- Department of Electrical Engineering and Computer Science, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
| | - Ken Takiyama
- Department of Electrical Engineering and Computer Science, Tokyo University of Agriculture and Technology, Koganei, Tokyo, Japan
- * E-mail:
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20
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Miozzo M, Peressotti F. How the hand has shaped sign languages. Sci Rep 2022; 12:11980. [PMID: 35831441 PMCID: PMC9279340 DOI: 10.1038/s41598-022-15699-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Accepted: 06/28/2022] [Indexed: 11/20/2022] Open
Abstract
In natural languages, biological constraints push toward cross-linguistic homogeneity while linguistic, cultural, and historical processes promote language diversification. Here, we investigated the effects of these opposing forces on the fingers and thumb configurations (handshapes) used in natural sign languages. We analyzed over 38,000 handshapes from 33 languages. In all languages, the handshape exhibited the same form of adaptation to biological constraints found in tasks for which the hand has naturally evolved (e.g., grasping). These results were not replicated in fingerspelling—another task where the handshape is used—thus revealing a signing-specific adaptation. We also showed that the handshape varies cross-linguistically under the effects of linguistic, cultural, and historical processes. Their effects could thus emerge even without departing from the demands of biological constraints. Handshape’s cross-linguistic variability consists in changes in the frequencies with which the most faithful handshapes to biological constraints appear in individual sign languages.
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Affiliation(s)
- Michele Miozzo
- Psychology Department, Columbia University, 1190 Amsterdam Av., New York, NY, 10027, USA.
| | - Francesca Peressotti
- Dipartimento di Psicologia dello Sviluppo e della Socializzazione, University of Padua, Padua, Italy.,Neuroscience Center, University of Padua, Padua, Italy
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21
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Higgins-Chen AT, Thrush KL, Wang Y, Minteer CJ, Kuo PL, Wang M, Niimi P, Sturm G, Lin J, Moore AZ, Bandinelli S, Vinkers CH, Vermetten E, Rutten BPF, Geuze E, Okhuijsen-Pfeifer C, van der Horst MZ, Schreiter S, Gutwinski S, Luykx JJ, Picard M, Ferrucci L, Crimmins EM, Boks MP, Hägg S, Hu-Seliger TT, Levine ME. A computational solution for bolstering reliability of epigenetic clocks: Implications for clinical trials and longitudinal tracking. NATURE AGING 2022; 2:644-661. [PMID: 36277076 PMCID: PMC9586209 DOI: 10.1038/s43587-022-00248-2] [Citation(s) in RCA: 106] [Impact Index Per Article: 53.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2021] [Accepted: 06/08/2022] [Indexed: 01/09/2023]
Abstract
Epigenetic clocks are widely used aging biomarkers calculated from DNA methylation data, but this data can be surprisingly unreliable. Here we show technical noise produces deviations up to 9 years between replicates for six prominent epigenetic clocks, limiting their utility. We present a computational solution to bolster reliability, calculating principal components from CpG-level data as input for biological age prediction. Our retrained principal-component versions of six clocks show agreement between most replicates within 1.5 years, improved detection of clock associations and intervention effects, and reliable longitudinal trajectories in vivo and in vitro. This method entails only one additional step compared to traditional clocks, requires no replicates or prior knowledge of CpG reliabilities for training, and can be applied to any existing or future epigenetic biomarker. The high reliability of principal component-based clocks is critical for applications to personalized medicine, longitudinal tracking, in vitro studies, and clinical trials of aging interventions.
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Affiliation(s)
- Albert T Higgins-Chen
- Department of Psychiatry, Yale University School of Medicine, New Haven, CT, USA
- VA Connecticut Healthcare System, West Haven, CT, USA
| | - Kyra L Thrush
- Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA
| | - Yunzhang Wang
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | | | - Pei-Lun Kuo
- Longitudinal Studies Section, Translational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA
| | - Meng Wang
- Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA
| | - Peter Niimi
- Department of Pathology, Yale University School of Medicine, New Haven, CT, USA
| | - Gabriel Sturm
- Departments of Psychiatry and Neurology, Division of Behavioral Medicine, Columbia University Irving Medical Center, New York, NY, United States
- New York State Psychiatric Institute, New York, NY United States
| | - Jue Lin
- Department of Biochemistry and Biophysics, University of California, San Francisco, CA, United States
| | - Ann Zenobia Moore
- Longitudinal Studies Section, Translational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA
| | | | - Christiaan H Vinkers
- Department of Psychiatry, Amsterdam University Medical Center, Amsterdam, The Netherlands
| | - Eric Vermetten
- Department Psychiatry, Leiden University Medical Center, Leiden, The Netherlands
| | - Bart P F Rutten
- School for Mental Health and Neuroscience, Department of Psychiatry and Neuropsychology, Maastricht University Medical Centre, Maastricht, The Netherlands
| | - Elbert Geuze
- Department of Psychiatry, Brain Center University Medical Center Utrecht, Utrecht University, The Netherlands
- Brain Research & Innovation Centre, Ministry of Defence, Utrecht, the Netherlands
| | - Cynthia Okhuijsen-Pfeifer
- Department of Psychiatry, Brain Center University Medical Center Utrecht, Utrecht University, The Netherlands
| | - Marte Z van der Horst
- Department of Psychiatry, Brain Center University Medical Center Utrecht, Utrecht University, The Netherlands
- Second Opinion Outpatient Clinic, GGNet Mental Health, Warnsveld, The Netherlands
| | - Stefanie Schreiter
- Department of Psychiatry and Psychotherapy, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany
| | - Stefan Gutwinski
- Department of Psychiatry and Psychotherapy, Charité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin, Humboldt-Universität zu Berlin, and Berlin Institute of Health, Berlin, Germany
| | - Jurjen J Luykx
- Department of Psychiatry, Brain Center University Medical Center Utrecht, Utrecht University, The Netherlands
- Second Opinion Outpatient Clinic, GGNet Mental Health, Warnsveld, The Netherlands
| | - Martin Picard
- Departments of Psychiatry and Neurology, Division of Behavioral Medicine, Columbia University Irving Medical Center, New York, NY, United States
- New York State Psychiatric Institute, New York, NY United States
| | - Luigi Ferrucci
- Longitudinal Studies Section, Translational Gerontology Branch, National Institute on Aging, Baltimore, MD, USA
| | - Eileen M Crimmins
- Davis School of Gerontology, University of Southern California, Los Angeles, CA, USA
| | - Marco P Boks
- Department of Psychiatry, Brain Center University Medical Center Utrecht, Utrecht University, The Netherlands
| | - Sara Hägg
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | | | - Morgan E Levine
- Department of Pathology, Yale University School of Medicine, New Haven, CT, USA
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22
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Yan Y, Sobinov AR, Bensmaia SJ. Prehension kinematics in humans and macaques. J Neurophysiol 2022; 127:1669-1678. [PMID: 35642848 DOI: 10.1152/jn.00522.2021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Non-human primates, especially rhesus macaques, have been a dominant model to study sensorimotor control of the upper limbs. Indeed, human and macaques have similar hands and homologous neural circuits to mediate manual behavior. However, few studies have systematically and quantitatively compared the manual behaviors of the two species. Such comparison is critical for assessing the validity of using the macaque sensorimotor system as a model of its human counterpart. In this study, we systematically compared the prehensile behaviors of humans and rhesus macaques using an identical experimental setup. We found human and macaque prehension kinematics to be generally similar with a few subtle differences. While the structure of the pre-shaping hand postures is similar in humans and macaques, human postures are more object-specific and human joints are less intercorrelated. Conversely, monkeys demonstrate more stereotypical pre-shaping behaviors that are common across all objects and more variability in their postures across repeated presentations of the same object. Despite these subtle differences in manual behavior between humans and monkeys, our results bolster the use of the macaque model to understand the neural mechanisms of manual dexterity in humans.
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Affiliation(s)
- Yuke Yan
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, United States.,Neuroscience Institute, University of Chicago, Chicago, IL, United States
| | - Anton R Sobinov
- Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, United States.,Neuroscience Institute, University of Chicago, Chicago, IL, United States
| | - Sliman J Bensmaia
- Committee on Computational Neuroscience, University of Chicago, Chicago, IL, United States.,Department of Organismal Biology and Anatomy, University of Chicago, Chicago, IL, United States.,Neuroscience Institute, University of Chicago, Chicago, IL, United States
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23
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Song Y, Hirashima M, Takei T. Neural Network Models for Spinal Implementation of Muscle Synergies. Front Syst Neurosci 2022; 16:800628. [PMID: 35370571 PMCID: PMC8965765 DOI: 10.3389/fnsys.2022.800628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2021] [Accepted: 02/23/2022] [Indexed: 12/02/2022] Open
Abstract
Muscle synergies have been proposed as functional modules to simplify the complexity of body motor control; however, their neural implementation is still unclear. Converging evidence suggests that output projections of the spinal premotor interneurons (PreM-INs) underlie the formation of muscle synergies, but they exhibit a substantial variation across neurons and exclude standard models assuming a small number of unitary “modules” in the spinal cord. Here we compared neural network models for muscle synergies to seek a biologically plausible model that reconciles previous clinical and electrophysiological findings. We examined three neural network models: one with random connections (non-synergy model), one with a small number of spinal synergies (simple synergy model), and one with a large number of spinal neurons representing muscle synergies with a certain variation (population synergy model). We found that the simple and population synergy models emulate the robustness of muscle synergies against cortical stroke observed in human stroke patients. Furthermore, the size of the spinal variation of the population synergy matched well with the variation in spinal PreM-INs recorded in monkeys. These results suggest that a spinal population with moderate variation is a biologically plausible model for the neural implementation of muscle synergies.
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Affiliation(s)
- Yunqing Song
- Graduate School of Medicine, Kyoto University, Kyoto, Japan
| | - Masaya Hirashima
- Center for Information and Neural Networks (CiNet), Advanced ICT Research Institute, National Institute of Information and Communications Technology (NICT), Suita, Japan
- Graduate School of Frontier Biosciences, Osaka University, Suita, Japan
| | - Tomohiko Takei
- Graduate School of Medicine, Kyoto University, Kyoto, Japan
- The Hakubi Center for Advanced Research, Kyoto University, Kyoto, Japan
- Brain Science Institute, Tamagawa University, Machida, Japan
- *Correspondence: Tomohiko Takei,
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24
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Idiosyncratic selection of active touch for shape perception. Sci Rep 2022; 12:2922. [PMID: 35190603 PMCID: PMC8861104 DOI: 10.1038/s41598-022-06807-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2021] [Accepted: 02/03/2022] [Indexed: 11/23/2022] Open
Abstract
Hand movements are essential for tactile perception of objects. However, the specific functions served by active touch strategies, and their dependence on physiological parameters, are unclear and understudied. Focusing on planar shape perception, we tracked at high resolution the hands of 11 participants during shape recognition task. Two dominant hand movement strategies were identified: contour following and scanning. Contour following movements were either tangential to the contour or oscillating perpendicular to it. Scanning movements crossed between distant parts of the shapes’ contour. Both strategies exhibited non-uniform coverage of the shapes’ contours. Idiosyncratic movement patterns were specific to the sensed object. In a second experiment, we have measured the participants’ spatial and temporal tactile thresholds. Significant portions of the variations in hand speed and in oscillation patterns could be explained by the idiosyncratic thresholds. Using data-driven simulations, we show how specific strategy choices may affect receptors activation. These results suggest that motion strategies of active touch adapt to both the sensed object and to the perceiver’s physiological parameters.
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Altan E, Solla SA, Miller LE, Perreault EJ. Estimating the dimensionality of the manifold underlying multi-electrode neural recordings. PLoS Comput Biol 2021; 17:e1008591. [PMID: 34843461 PMCID: PMC8659648 DOI: 10.1371/journal.pcbi.1008591] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Revised: 12/09/2021] [Accepted: 11/11/2021] [Indexed: 01/07/2023] Open
Abstract
It is generally accepted that the number of neurons in a given brain area far exceeds the number of neurons needed to carry any specific function controlled by that area. For example, motor areas of the human brain contain tens of millions of neurons that control the activation of tens or at most hundreds of muscles. This massive redundancy implies the covariation of many neurons, which constrains the population activity to a low-dimensional manifold within the space of all possible patterns of neural activity. To gain a conceptual understanding of the complexity of the neural activity within a manifold, it is useful to estimate its dimensionality, which quantifies the number of degrees of freedom required to describe the observed population activity without significant information loss. While there are many algorithms for dimensionality estimation, we do not know which are well suited for analyzing neural activity. The objective of this study was to evaluate the efficacy of several representative algorithms for estimating the dimensionality of linearly and nonlinearly embedded data. We generated synthetic neural recordings with known intrinsic dimensionality and used them to test the algorithms' accuracy and robustness. We emulated some of the important challenges associated with experimental data by adding noise, altering the nature of the embedding of the low-dimensional manifold within the high-dimensional recordings, varying the dimensionality of the manifold, and limiting the amount of available data. We demonstrated that linear algorithms overestimate the dimensionality of nonlinear, noise-free data. In cases of high noise, most algorithms overestimated the dimensionality. We thus developed a denoising algorithm based on deep learning, the "Joint Autoencoder", which significantly improved subsequent dimensionality estimation. Critically, we found that all algorithms failed when the intrinsic dimensionality was high (above 20) or when the amount of data used for estimation was low. Based on the challenges we observed, we formulated a pipeline for estimating the dimensionality of experimental neural data.
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Affiliation(s)
- Ege Altan
- Department of Neuroscience, Northwestern University, Chicago, Illinois, United States of America
- Department of Biomedical Engineering, Northwestern University, Evanston, Illinois, United States of America
| | - Sara A. Solla
- Department of Neuroscience, Northwestern University, Chicago, Illinois, United States of America
- Department of Physics and Astronomy, Northwestern University, Evanston, Illinois, United States of America
| | - Lee E. Miller
- Department of Neuroscience, Northwestern University, Chicago, Illinois, United States of America
- Department of Biomedical Engineering, Northwestern University, Evanston, Illinois, United States of America
- Department of Physical Medicine and Rehabilitation, Northwestern University, Chicago, Illinois, United States of America
- Shirley Ryan AbilityLab, Chicago, Illinois, United States of America
| | - Eric J. Perreault
- Department of Biomedical Engineering, Northwestern University, Evanston, Illinois, United States of America
- Department of Physical Medicine and Rehabilitation, Northwestern University, Chicago, Illinois, United States of America
- Shirley Ryan AbilityLab, Chicago, Illinois, United States of America
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Bigand F, Prigent E, Berret B, Braffort A. Decomposing spontaneous sign language into elementary movements: A principal component analysis-based approach. PLoS One 2021; 16:e0259464. [PMID: 34714862 PMCID: PMC8555838 DOI: 10.1371/journal.pone.0259464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 10/19/2021] [Indexed: 11/18/2022] Open
Abstract
Sign Language (SL) is a continuous and complex stream of multiple body movement features. That raises the challenging issue of providing efficient computational models for the description and analysis of these movements. In the present paper, we used Principal Component Analysis (PCA) to decompose SL motion into elementary movements called principal movements (PMs). PCA was applied to the upper-body motion capture data of six different signers freely producing discourses in French Sign Language. Common PMs were extracted from the whole dataset containing all signers, while individual PMs were extracted separately from the data of individual signers. This study provides three main findings: (1) although the data were not synchronized in time across signers and discourses, the first eight common PMs contained 94.6% of the variance of the movements; (2) the number of PMs that represented 94.6% of the variance was nearly the same for individual as for common PMs; (3) the PM subspaces were highly similar across signers. These results suggest that upper-body motion in unconstrained continuous SL discourses can be described through the dynamic combination of a reduced number of elementary movements. This opens up promising perspectives toward providing efficient automatic SL processing tools based on heavy mocap datasets, in particular for automatic recognition and generation.
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Affiliation(s)
- Félix Bigand
- Université Paris-Saclay, CNRS, LISN, Orsay, France
- * E-mail:
| | | | - Bastien Berret
- Université Paris-Saclay, CIAMS, Institut Universitaire de France, Orsay, France
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Jazayeri M, Ostojic S. Interpreting neural computations by examining intrinsic and embedding dimensionality of neural activity. Curr Opin Neurobiol 2021; 70:113-120. [PMID: 34537579 PMCID: PMC8688220 DOI: 10.1016/j.conb.2021.08.002] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Revised: 08/11/2021] [Accepted: 08/12/2021] [Indexed: 11/16/2022]
Abstract
The ongoing exponential rise in recording capacity calls for new approaches for analysing and interpreting neural data. Effective dimensionality has emerged as an important property of neural activity across populations of neurons, yet different studies rely on different definitions and interpretations of this quantity. Here, we focus on intrinsic and embedding dimensionality, and discuss how they might reveal computational principles from data. Reviewing recent works, we propose that the intrinsic dimensionality reflects information about the latent variables encoded in collective activity while embedding dimensionality reveals the manner in which this information is processed. We conclude by highlighting the role of network models as an ideal substrate for testing more specifically various hypotheses on the computational principles reflected through intrinsic and embedding dimensionality.
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Affiliation(s)
- Mehrdad Jazayeri
- McGovern Institute for Brain Research, Department of Brain & Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA
| | - Srdjan Ostojic
- Laboratoire de Neurosciences Cognitives, INSERM U960, École Normale Supérieure - PSL Research University, 75005, Paris, France.
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Misra J, Surampudi SG, Venkatesh M, Limbachia C, Jaja J, Pessoa L. Learning brain dynamics for decoding and predicting individual differences. PLoS Comput Biol 2021; 17:e1008943. [PMID: 34478442 PMCID: PMC8445454 DOI: 10.1371/journal.pcbi.1008943] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 09/16/2021] [Accepted: 08/19/2021] [Indexed: 12/04/2022] Open
Abstract
Insights from functional Magnetic Resonance Imaging (fMRI), as well as recordings of large numbers of neurons, reveal that many cognitive, emotional, and motor functions depend on the multivariate interactions of brain signals. To decode brain dynamics, we propose an architecture based on recurrent neural networks to uncover distributed spatiotemporal signatures. We demonstrate the potential of the approach using human fMRI data during movie-watching data and a continuous experimental paradigm. The model was able to learn spatiotemporal patterns that supported 15-way movie-clip classification (∼90%) at the level of brain regions, and binary classification of experimental conditions (∼60%) at the level of voxels. The model was also able to learn individual differences in measures of fluid intelligence and verbal IQ at levels comparable to that of existing techniques. We propose a dimensionality reduction approach that uncovers low-dimensional trajectories and captures essential informational (i.e., classification related) properties of brain dynamics. Finally, saliency maps and lesion analysis were employed to characterize brain-region/voxel importance, and uncovered how dynamic but consistent changes in fMRI activation influenced decoding performance. When applied at the level of voxels, our framework implements a dynamic version of multivariate pattern analysis. Our approach provides a framework for visualizing, analyzing, and discovering dynamic spatially distributed brain representations during naturalistic conditions.
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Affiliation(s)
- Joyneel Misra
- Department of Electrical and Computer Engineering, University of Maryland, College Park, Maryland, United States of America
| | - Srinivas Govinda Surampudi
- Department of Electrical and Computer Engineering, University of Maryland, College Park, Maryland, United States of America
| | - Manasij Venkatesh
- Department of Electrical and Computer Engineering, University of Maryland, College Park, Maryland, United States of America
| | - Chirag Limbachia
- Department of Psychology and Maryland Neuroimaging Center, University of Maryland, College Park, Maryland, United States of America
| | - Joseph Jaja
- Department of Electrical and Computer Engineering, University of Maryland, College Park, Maryland, United States of America
| | - Luiz Pessoa
- Department of Electrical and Computer Engineering, University of Maryland, College Park, Maryland, United States of America
- Department of Psychology and Maryland Neuroimaging Center, University of Maryland, College Park, Maryland, United States of America
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Hausmann SB, Vargas AM, Mathis A, Mathis MW. Measuring and modeling the motor system with machine learning. Curr Opin Neurobiol 2021; 70:11-23. [PMID: 34116423 DOI: 10.1016/j.conb.2021.04.004] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 03/23/2021] [Accepted: 04/18/2021] [Indexed: 12/11/2022]
Abstract
The utility of machine learning in understanding the motor system is promising a revolution in how to collect, measure, and analyze data. The field of movement science already elegantly incorporates theory and engineering principles to guide experimental work, and in this review we discuss the growing use of machine learning: from pose estimation, kinematic analyses, dimensionality reduction, and closed-loop feedback, to its use in understanding neural correlates and untangling sensorimotor systems. We also give our perspective on new avenues, where markerless motion capture combined with biomechanical modeling and neural networks could be a new platform for hypothesis-driven research.
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Affiliation(s)
| | | | - Alexander Mathis
- EPFL, Swiss Federal Institute of Technology, Lausanne, Switzerland.
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30
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Lutz OJ, Bensmaia SJ. Proprioceptive representations of the hand in somatosensory cortex. CURRENT OPINION IN PHYSIOLOGY 2021. [DOI: 10.1016/j.cophys.2021.04.002] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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