Global patterns of potential future plant diversity hidden in soil seed banks

Soil salinity regulates spatial-temporal heterogeneity of seed germination and seedbank persistence of an annual diaspore-trimorphic halophyte in northern China

BACKGROUND AND AIMS

Seed heteromorphism is a plant strategy that an individual plant produces two or more distinct types of diaspores, which have diverse morphology, dispersal ability, ecological functions and different effects on plant life history traits. The aim of this study was to test the effects of seasonal soil salinity and burial depth on the dynamics of dormancy/germination and persistence/depletion of buried trimorphic diaspores of a desert annual halophyte Atriplex centralasiatica.

METHODS

We investigated the effects of salinity and seasonal fluctuations of temperature on germination, recovery of germination and mortality of types A, B, C diaspores of A. centralasiatica in the laboratory and buried diaspores in situ at four soil salinities and three depths. Diaspores were collected monthly from the seedbank from December 2016 to November 2018, and the number of viable diaspores remaining (not depleted) and their germinability were determined.

RESULTS

Non-dormant type A diaspores were depleted in the low salinity "window" in the first year. Dormant diaspore types B and C germinated to high percentages at 0.3 and 0.1 mol L-1 soil salinity, respectively. High salinity and shallow burial delayed depletion of diaspore types B and C. High salinity delayed depletion time of the three diaspore types and delayed dormancy release of types B and C diaspores from autumn to spring. Soil salinity modified the response of diaspores in the seedbank by delaying seed dormancy release in autum and winter and by providing a low-salt concentration window for germination of non-dormant diaspores in spring and early summer.

CONCLUSIONS

Buried trimorphic diaspores of annual desert halophyte A. centralasiatica exhibited diverse dormancy/germination behavior in respond to seasonal soil salinity fluctuation. Prolonging persistence of the seedbank and delaying depletion of diaspores under salt stress in situ primarily is due to inhibition of dormancy-break. The differences in dormancy/germination and seed persistence in the soil seedbank may be a bet-hadging strategy adapted to stressful temporal and spatial heterogeneity, and allows A. centralasiatica to persist in the unpredictable cold desert enevironment.

Global insect herbivory and its response to climate change

Herbivorous insects consume a large proportion of the energy flow in terrestrial ecosystems and play a major role in the dynamics of plant populations and communities. However, high-resolution, quantitative predictions of the global patterns of insect herbivory and their potential underlying drivers remain elusive. Here, we compiled and analyzed a dataset consisting of 9,682 records of the severity of insect herbivory from across natural communities worldwide to quantify its global patterns and environmental determinants. Global mapping revealed strong spatial variation in insect herbivory at the global scale, showing that insect herbivory did not significantly vary with latitude for herbaceous plants but increased with latitude for woody plants. We found that the cation-exchange capacity in soil was a main predictor of levels of herbivory on herbaceous plants, while climate largely determined herbivory on woody plants. We next used well-established scenarios for future climate change to forecast how spatial patterns of insect herbivory may be expected to change with climate change across the world. We project that herbivore pressure will intensify on herbaceous plants worldwide but would likely only increase in certain biomes (e.g., northern coniferous forests) for woody plants. Our assessment provides quantitative evidence of how environmental conditions shape the spatial pattern of insect herbivory, which enables a more accurate prediction of the vulnerabilities of plant communities and ecosystem functions in the Anthropocene.

Global synthesis on the response of soil microbial necromass carbon to climate-smart agriculture

Climate-smart agriculture (CSA) supports the sustainability of crop production and food security, and benefiting soil carbon storage. Despite the critical importance of microorganisms in the carbon cycle, systematic investigations on the influence of CSA on soil microbial necromass carbon and its driving factors are still limited. We evaluated 472 observations from 73 peer-reviewed articles to show that, compared to conventional practice, CSA generally increased soil microbial necromass carbon concentrations by 18.24%. These benefits to soil microbial necromass carbon, as assessed by amino sugar biomarkers, are complex and influenced by a variety of soil, climatic, spatial, and biological factors. Changes in living microbial biomass are the most significant predictor of total, fungal, and bacterial necromass carbon affected by CSA; in 61.9%-67.3% of paired observations, the CSA measures simultaneously increased living microbial biomass and microbial necromass carbon. Land restoration and nutrient management therein largely promoted microbial necromass carbon storage, while cover crop has a minor effect. Additionally, the effects were directly influenced by elevation and mean annual temperature, and indirectly by soil texture and initial organic carbon content. In the optimal scenario, the potential global carbon accrual rate of CSA through microbial necromass is approximately 980 Mt C year-1, assuming organic amendment is included following conservation tillage and appropriate land restoration. In conclusion, our study suggests that increasing soil microbial necromass carbon through CSA provides a vital way of mitigating carbon loss. This emphasizes the invisible yet significant influence of soil microbial anabolic activity on global carbon dynamics.

Elevation Influences Belowground Biomass Proportion in Forests by Affecting Climatic Factors, Soil Nutrients and Key Leaf Traits

Forest biomass allocation is a direct manifestation of biological adaptation to environmental changes. Studying the distribution patterns of forest biomass along elevational gradients is ecologically significant for understanding the specific impacts of global change on plant resource allocation strategies. While aboveground biomass has been extensively studied, research on belowground biomass remains relatively limited. Furthermore, the patterns and driving factors of the belowground biomass proportion (BGBP) along elevational gradients are still unclear. In this study, we investigated the specific influences of climatic factors, soil nutrients, and key leaf traits on the elevational pattern of BGBP using data from 926 forests at 94 sites across China. In this study, BGBP data were calculated from the root biomass to the depth of 50 cm. Our findings indicate considerable variability in forest BGBP at a macro scale, showing a significant increasing trend along elevational gradients (p < 0.01). BGBP significantly decreases with increasing temperature and precipitation and increases with annual mean evapotranspiration (MAE) (p < 0.01). It decreases significantly with increasing soil phosphorus content and increases with soil pH (p < 0.01). Key leaf traits (leaf nitrogen (LN) and leaf phosphorus (LP)) are positively correlated with BGBP. Climatic factors (R2 = 0.46) have the strongest explanatory power for the variation in BGBP along elevations, while soil factors (R2 = 0.10) and key leaf traits (R2 = 0.08) also play significant roles. Elevation impacts BGBP directly and also indirectly through influencing such as climate conditions, soil nutrient availability, and key leaf traits, with direct effects being more pronounced than indirect effects. This study reveals the patterns and controlling factors of forests' BGBP along elevational gradients, providing vital ecological insights into the impact of global change on plant resource allocation strategies and offering scientific guidance for ecosystem management and conservation.

Reducing risks of antibiotics to crop production requires land system intensification within thresholds

Land system intensification has substantially enhanced crop production; however, it has also created soil antibiotic pollution, undermining crop production. Here, we projected soil antibiotic pollution risks to crop production at multiple geographical scales in China and linked them to land system intensification (including arable land expansion and input increase). Our projections suggest that crop production will substantially decrease when the soil antibiotic pollution risk quotient exceeds 8.30-9.98. Land systems explain most of the variability in antibiotic pollution risks (21-66%) across spatial scales. The convex nonlinearities in tradeoffs between antibiotic pollution risk and crop production indicate that vegetable and wheat production have higher thresholds of land system intensification at which the risk-yield tradeoffs will peak than do maize and rice production. Our study suggests that land system intensification below the minimum thresholds at multiple scales is required for acceptable antibiotic pollution risks related to crop yield reduction.

In Site Soil Seed-Banks: Size, Composition and Persistence across Tropical Successional Stages

I investigated the size, composition and persistence of the seed-bank in primary forests, secondary forests and old-fields in southern Mexico. I also assessed the contribution of the seed-bank to regeneration relative to other propagule sources. In all habitats, I removed by hand all plants and litter and excluded the seed-rain. For one year, I counted the number of plant species (5-50 cm tall) emerged and grouped them into different growth-forms: trees, shrubs, palms, herbs, woody lianas, epiphytes and hemi-epiphytes. A total of 95 species emerged. The seed-bank size, composition and persistence showed strong variation among successional stages. Emergence was low for primary and secondary forests, but high for old-fields (19, 26, and 68 plants per m-2, respectively). Herbs were the most abundant in the seed-bank and palms the less. Time had a negative effect on seed-bank size in primary forests and old-fields; whereas for secondary forests size remained constant throughout the year. The number of emerged plants in different growth-forms changed significantly across time for all successional stages. Overall, the seed-bank provided a greater number of plants in old-fields relative to other propagule sources combined. The results showed that forest modification alters the input of propagules throughout the seed-bank for different plant growth-forms.

Herbivory and nutrients shape grassland soil seed banks

Anthropogenic nutrient enrichment and shifts in herbivory can lead to dramatic changes in the composition and diversity of aboveground plant communities. In turn, this can alter seed banks in the soil, which are cryptic reservoirs of plant diversity. Here, we use data from seven Nutrient Network grassland sites on four continents, encompassing a range of climatic and environmental conditions, to test the joint effects of fertilization and aboveground mammalian herbivory on seed banks and on the similarity between aboveground plant communities and seed banks. We find that fertilization decreases plant species richness and diversity in seed banks, and homogenizes composition between aboveground and seed bank communities. Fertilization increases seed bank abundance especially in the presence of herbivores, while this effect is smaller in the absence of herbivores. Our findings highlight that nutrient enrichment can weaken a diversity maintaining mechanism in grasslands, and that herbivory needs to be considered when assessing nutrient enrichment effects on seed bank abundance.

The types of microplastics, heavy metals, and adsorption environments control the microplastic adsorption capacity of heavy metals

Anthropogenic development has released large amounts of microplastics (MPs), which are carriers of migratory heavy metals, into the environment, and heavy metal adsorption by MPs may have strong combined toxic effects on ecosystems. However, until now, a comprehensive understanding of the factors influencing these adsorption capacities of MPs has been lacking. Thus, we used 4984 experimental data points to systematically assess the factors influencing the adsorption strength of 8 types of MPs on 13 types of heavy metals. We found that (1) the types of MPs, heavy metals, and adsorption environments significantly impacted the heavy metal adsorption capacities of MPs; (2) polyvinyl alcohol (PVA) showed a higher adsorption capacity for lead (Pb) and cadmium (Cd) than did other MPs, by 2810.62 mg/kg and 2732.84 mg/kg, respectively; (3) the adsorption capacities of MPs for heavy metal were regulated by multiple variables, with heavy metal concentration, MP quality, solution amount, adsorption time, and pH being the most important; and (4) MPs had a higher adsorption capacity in aquatic environments (except for seawater) than which in soil environments. Overall, our study clearly showed that the types of heavy metals, adsorption environments, and MPs influenced the heavy metal adsorption capacities of MPs and may exacerbate their combined environmental toxicity, which would help better characterize the severity of MP pollution.

Grazing reduces plant sexual reproduction but increases asexual reproduction: A global meta-analysis

Grazing affects grasslands worldwide. However, the global patterns and general mechanisms of how grazing affects plant reproductive traits are poorly understood, especially in the context of different climates and grazing duration. We conducted a meta-analysis of 114 independent grazing studies worldwide that measured plant reproductive traits in grasslands. The results showed that the number of tillers of plant increased under grazing. Grazing did not affect the number of reproductive branches of forbs, but significantly reduced the number of reproductive branches of grasses. Grazing increased the number of vegetative branches of all plants and reduced the proportion of reproductive branches. Grazing significantly reduced the number of flowers in forbs. Seed yield in the two plant functional groups was reduced compared with no-grazing. Under grazing, the sexual reproduction of grasses decreased much more substantially than that of forbs. This may be due to biomass allocation pattern of grasses under grazing (i.e., belowground versus aboveground). Under grazing, plants tended to adopt rapid, low-input asexual reproduction rather than long-term, high-risk sexual reproduction. This study represents the first large-scale evaluation of plant reproductive trait responses under grazing and demonstrates that grazing inhibits sexual reproduction and promotes asexual reproduction. The effect of grazing on plant sexual reproduction was influenced by grazing intensity, mean annual precipitation, and grazing duration. These results will assist in the development of sustainable grazing management strategies to improve the balance between human welfare and grassland ecosystem health.

Diversified land conversion deepens understanding of impacts of rapid rubber plantation expansion on plant diversity in the tropics

Understanding the status and changes of plant diversity in rubber (Hevea brasiliensis) plantations is essential for sustainable plantation management in the context of rapid rubber expansion in the tropics, but remains very limited at the continental scale. In this study, we investigated plant diversity from 10-meter quadrats in 240 different rubber plantations in the six countries of the Great Mekong Subregion (GMS)-where nearly half of the world's rubber plantations are located-and analyzed the influence of original land cover types and stand age on plant diversity using Landsat and Sentinel-2 satellite imagery since the late 1980s. The results indicate that the average plant species richness of rubber plantations is 28.69 ± 7.35 (1061 species in total, of which 11.22 % are invasive), approximating half the species richness of tropical forests but roughly double that of the intensively managed croplands. Time-series satellite imagery analysis revealed that rubber plantations were primarily established in place of cropland (RP_C, 37.72 %), old rubber plantations (RP_ORP, 27.63 %), and tropical forests (RP_TF, 24.12 %). Plant species richness in RP_TF (34.02 ± 7.62) was significantly (p < 0.001) higher than that in RP_ORP (26.41 ± 7.02) and RP_C (26.34 ± 5.37). More importantly, species richness can be maintained for the duration of the 30-year economic cycle, and the number of invasive species decreases as the stand ages. Given diverse land conversions and changes in stand age, the total loss of species richness due to rapid rubber expansion in the GMS was 7.29 %, which is far below the traditional estimates that only consider tropical forest conversion. In general, maintaining higher species richness at the earliest stages of cultivation has significant implications for biodiversity conservation in rubber plantations.

Responses of soil seed banks to drought on a global scale

The global increase in drought frequency and intensity in large areas has potentially important effects on soil seed banks (SSBs). However, a systematic evaluation of the impact of drought on SSBs at a global scale has not yet been well understood. We evaluated the effects of drought on SSBs and identified the association key drivers in the current meta-analysis. The overall effects of drought on soil seed density and richness were weak negative and positive, respectively. Drought significantly increased soil seed density by 11.94 % in forest ecosystem, whereas soil seed richness were significantly increased in vascular plants (7.39 %). Linear mixed-effect results showed that soil seed density and richness significantly reduced as increasing drought intensity. In addition, geography (altitude) has significance in controlling the lnRR of soil seed density by altering climate (mean annual precipitation, drought) and soil properties (pH, soil organic carbon, and clay content) in the structural equation model, whereas soil seed richness was controlled by geography (altitude, and latitude) via climate (mean annual precipitation). In summary, the results suggested the size of SSBs response to drought and its relationship with drought intensity in terrestrial ecosystems, it may shed light on ecosystem restoration, succession, and management using SSBs when estimating the future drought.

The spatial patterns of diversity and their relationships with environments in rhizosphere microorganisms and host plants differ along elevational gradients

Introduction

Identifying spatial patterns of biodiversity along elevational gradients provides a unified framework for understanding these patterns and predicting ecological responses to climate change. Moreover, microorganisms and plants are closely interconnected (e.g., via the rhizosphere) and thus may share spatial patterns of diversity and show similar relationships with environments.

Methods

This study compared diversity patterns and relationships with environments in host plants and rhizosphere microorganisms (including various functional groups) along elevational gradients across three climatic zones.

Results

We found that above-and belowground diversity decreased monotonically or showed a hump-shaped or U-shaped pattern along elevation gradients. However, the diversity patterns of plants, bacteria, and fungi varied depending on the taxon and climatic zone. Temperature and humidity strongly contribute to above-and belowground diversity patterns and community composition along elevational gradients. Nonetheless, soil factors might be important regulators of diversity patterns and the community composition of plants and microorganisms along these gradients. Structural equation modeling revealed that environmental factors had a stronger direct effect on rhizosphere microbial diversity than host plant diversity.

Discussion

In sum, spatial patterns of diversity and their relationships with environments in rhizosphere microorganisms and their host plants differed at the regional scale. Different functional groups (e.g., pathogen, mycorrhiza and nitrifier) of soil microorganisms may have divergent elevational patterns and environmental responses. These data improve our understanding of elevational diversity patterns, and provide new insights into the conservation of biodiversity and ecosystem management, especially under climate change.

Negative impacts of human disturbances on the seed bank of subalpine forests are offset by climatic factors

Precipitation and temperature in the subalpine region have increased dramatically in recent decades due to global warming, and human disturbances have continued to impact the vegetation in the region. Seed bank plays an important role in population recovery, but there are few studies on the synergistic effects of human disturbances and climate change on seed bank. We analyzed the synergistic effects of human disturbances and climate change on seed bank samples from 20 sites in the subalpine coniferous forest region using grazing and logging as the disturbance intensity gradient and precipitation and temperature as climate variables. The species diversity of aboveground vegetation all changed significantly (p < 0.05) with precipitation, temperature and disturbance level, while the seed bank richness and density did not. Furthermore, the species composition of the seed bank varied significantly less than that of the aboveground vegetation at different levels of disturbance (p < 0.001). Thus, seed bank showed a strong buffering capacity against the risk of local extinction caused by environmental changes that shift the species composition and diversity of aboveground vegetation. In addition, soil and litter are important influences controlling seed bank density in subalpine forests, and the results of structural equation modelling suggest that both disturbance and climate change can indirectly regulate the seed bank by changing the physicochemical properties of soil and litter. We conclude that increases in precipitation and temperature driven by climate change can buffer the negative effects of disturbances on the seed bank.

Intelligent image analysis recognizes important orchid viral diseases

Phalaenopsis orchids are one of the most important exporting commodities for Taiwan. Most orchids are planted and grown in greenhouses. Early detection of orchid diseases is crucially valuable to orchid farmers during orchid cultivation. At present, orchid viral diseases are generally identified with manual observation and the judgment of the grower's experience. The most commonly used assays for virus identification are nucleic acid amplification and serology. However, it is neither time nor cost efficient. Therefore, this study aimed to create a system for automatically identifying the common viral diseases in orchids using the orchid image. Our methods include the following steps: the image preprocessing by color space transformation and gamma correction, detection of leaves by a U-net model, removal of non-leaf fragment areas by connected component labeling, feature acquisition of leaf texture, and disease identification by the two-stage model with the integration of a random forest model and an inception network (deep learning) model. Thereby, the proposed system achieved the excellent accuracy of 0.9707 and 0.9180 for the image segmentation of orchid leaves and disease identification, respectively. Furthermore, this system outperformed the naked-eye identification for the easily misidentified categories [cymbidium mosaic virus (CymMV) and odontoglossum ringspot virus (ORSV)] with the accuracy of 0.842 using two-stage model and 0.667 by naked-eye identification. This system would benefit the orchid disease recognition for Phalaenopsis cultivation.

Rising Shallow Groundwater Level May Facilitate Seed Persistence in the Supratidal Wetlands of the Yellow River Delta

The saline groundwater level of many supratidal wetlands is rising, which is expected to continue into the future because of sea level rise by the changing climate. Plant persistence strategies are increasingly important in the face of changing climate. However, the response of seed persistence to increasing groundwater level and salinity conditions is poorly understood despite its importance for the continuous regeneration of plant populations. Here, we determined the initial seed germinability and viability of seven species from supratidal wetlands in the Yellow River Delta and then stored the seeds for 90 days. The storage treatments consisted of two factors: groundwater level (to maintain moist and saturated conditions) and groundwater salinity (0, 10, 20, and 30 g/L). After retrieval from experimental storage, seed persistence was assessed. We verified that the annuals showed greater seed persistence than the perennials in the supratidal wetlands. Overall, seed persistence was greater after storage in saturated conditions than moist conditions. Salinity positively affected seed persistence under moist conditions. Surprisingly, we also found that higher groundwater salinity was associated with faster germination speed after storage. These results indicate that, once dispersed into habitats with high groundwater levels and high groundwater salinity in supratidal wetlands, many species of seeds may not germinate but maintain viability for some amount of time to respond to climate change.