1
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Fu Z, Duan Y, Pei H, Zou Y, Tang M, Chen Y, Yang T, Ma Z, Yan W, Su K, Cai X, Guo T, Teng Y, Jia T, Chen L. Discovery of Potent, Specific, and Orally Available NLRP3 Inflammasome Inhibitors Based on Pyridazine Scaffolds for the Treatment of Septic Shock and Peritonitis. J Med Chem 2024. [PMID: 39169676 DOI: 10.1021/acs.jmedchem.4c01341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2024]
Abstract
The NLRP3 inflammasome is a multiprotein complex that is a component of the innate immune system, involved in the production of pro-inflammatory cytokines. Its abnormal activation is associated with many inflammatory diseases. In this study, we designed and synthesized a series of NLRP3 inflammasome inhibitors based on pyridazine scaffolds. Among them, P33 exhibited significant inhibitory effects against nigericin-induced IL-1β release in THP-1 cells, BMDMs, and PBMCs, with IC50 values of 2.7, 15.3, and 2.9 nM, respectively. Mechanism studies indicated that P33 directly binds to NLRP3 protein (KD = 17.5 nM), inhibiting NLRP3 inflammasome activation and pyroptosis by suppressing ASC oligomerization during NLRP3 assembly. Additionally, P33 displayed excellent pharmacokinetic properties, with an oral bioavailability of 62%. In vivo efficacy studies revealed that P33 significantly ameliorated LPS-induced septic shock and MSU crystal-induced peritonitis in mice. These results indicate that P33 has great potential for further development as a candidate for treating NLRP3 inflammasome-mediated diseases.
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Affiliation(s)
- Zhiyuan Fu
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Yangqin Duan
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Heying Pei
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Yurong Zou
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Minghai Tang
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Yong Chen
- Innovation Center of Nursing Research and Nursing Key Laboratory of Sichuan Province, West China Hospital, Sichuan University/West China School of Nursing, Sichuan University, Chengdu 610041, China
| | - Tao Yang
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Ziyan Ma
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Wei Yan
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Kaiyue Su
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Xiaoying Cai
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Tao Guo
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Yaxin Teng
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
| | - Tao Jia
- Chengdu Zenitar Biomedical Technology Co., Ltd., Chengdu 610041, China
| | - Lijuan Chen
- Department of Biotherapy, Cancer Center and State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu 610041, China
- Chengdu Zenitar Biomedical Technology Co., Ltd., Chengdu 610041, China
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2
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Gao XY, Tang L, Zhang X, Feng JJ. Palladium-catalyzed decarboxylative (4 + 3) cycloadditions of bicyclobutanes with 2-alkylidenetrimethylene carbonates for the synthesis of 2-oxabicyclo[4.1.1]octanes. Chem Sci 2024:d4sc02998d. [PMID: 39139738 PMCID: PMC11317905 DOI: 10.1039/d4sc02998d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 08/01/2024] [Indexed: 08/15/2024] Open
Abstract
While cycloaddition reactions of bicyclobutanes (BCBs) have emerged as a potent method for synthesizing (hetero-)bicyclo[n.1.1]alkanes (usually n ≤ 3), their utilization in the synthesis of bicyclo[4.1.1]octane derivatives (BCOs) is still underdeveloped. Here, a palladium-catalyzed formal (4 + 3) reaction of BCBs with 1,4-O/C dipole precursors for the synthesis of oxa-BCOs is described. Unlike previous catalytic polar (3 + X) cycloadditions of BCBs, which are typically achieved through the activation of BCB substrates, the current reaction represents a novel strategy for realizing the cycloaddition of BCBs through the activation of the "X" cycloaddition partner. Moreover, the obtained functionalized oxa-BCOs products can be readily modified through various synthetic transformations.
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Affiliation(s)
- Xin-Yu Gao
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha Hunan 410082 P. R. China
| | - Lei Tang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha Hunan 410082 P. R. China
| | - Xu Zhang
- School of Chemistry & Chemical Engineering, Yangzhou University Yangzhou 225002 P.R. China
| | - Jian-Jun Feng
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha Hunan 410082 P. R. China
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3
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Hu QQ, Wang LY, Chen XH, Geng ZX, Chen J, Zhou L. Lewis Acid Catalyzed Cycloaddition of Bicyclobutanes with Ynamides for the Synthesis of Polysubstituted 2-Amino-bicyclo[2.1.1]hexenes. Angew Chem Int Ed Engl 2024; 63:e202405781. [PMID: 38782734 DOI: 10.1002/anie.202405781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Revised: 05/23/2024] [Accepted: 05/23/2024] [Indexed: 05/25/2024]
Abstract
Synthesis of bicyclic scaffolds has gained significant attention in drug discovery due to their potential to mimic benzene bioisosteres. Here, we present a mild and scalable Sc(OTf)3-catalyzed [3+2] cycloaddition of bicyclo[1.1.0]butanes (BCBs) with ynamides, yielding a diverse array of polysubstituted 2-amino-bicyclo[2.1.1]hexenes in good to excellent yields. These products offer valuable starting materials for the construction of novel functionalized bicyclo[1.1.0]butanes. Preliminary mechanistic studies indicate that the reaction involves a nucleophilic addition of ynamides to bicyclo[1.1.0]butanes, followed by an intramolecular cyclization of in situ generated enolate and keteniminium ion. We expect that these findings will encourage utilization of complex bioisosteres and foster further investigation into BCB-based cycloaddition chemistry.
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Affiliation(s)
- Qian-Qian Hu
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710127, P. R. China
| | - Liu-Yang Wang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710127, P. R. China
| | - Xing-Hao Chen
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710127, P. R. China
| | - Ze-Xiang Geng
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710127, P. R. China
| | - Jie Chen
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710127, P. R. China
| | - Ling Zhou
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry & Materials Science, Northwest University, Xi'an, 710127, P. R. China
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4
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Tsien J, Hu C, Merchant RR, Qin T. Three-dimensional saturated C(sp 3)-rich bioisosteres for benzene. Nat Rev Chem 2024; 8:605-627. [PMID: 38982260 DOI: 10.1038/s41570-024-00623-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/24/2024] [Indexed: 07/11/2024]
Abstract
Benzenes, the most ubiquitous structural moiety in marketed small-molecule drugs, are frequently associated with poor 'drug-like' properties, including metabolic instability, and poor aqueous solubility. In an effort to overcome these limitations, recent developments in medicinal chemistry have demonstrated the improved physicochemical profiles of C(sp3)-rich bioisosteric scaffolds relative to arenes. In the past two decades, we have witnessed an exponential increase in synthetic methods for accessing saturated bioisosteres of monosubstituted and para-substituted benzenes. However, until recent discoveries, analogous three-dimensional ortho-substituted and meta-substituted biososteres have remained underexplored, owing to their ring strain and increased s-character hybridization. This Review summarizes the emerging synthetic methodologies to access such saturated motifs and their impact on the application of bioisosteres for ortho-substituted, meta-substituted and multi-substituted benzene rings. It concludes with a perspective on the development of next-generation bioisosteres, including those within novel chemical space.
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Affiliation(s)
- Jet Tsien
- Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Chao Hu
- Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, USA
| | - Rohan R Merchant
- Department of Discovery Chemistry, Merck & Co., Inc., South San Francisco, CA, USA
| | - Tian Qin
- Department of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, TX, USA.
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5
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Zhou JL, Xiao Y, He L, Gao XY, Yang XC, Wu WB, Wang G, Zhang J, Feng JJ. Palladium-Catalyzed Ligand-Controlled Switchable Hetero-(5 + 3)/Enantioselective [2σ+2σ] Cycloadditions of Bicyclobutanes with Vinyl Oxiranes. J Am Chem Soc 2024; 146:19621-19628. [PMID: 38739092 DOI: 10.1021/jacs.4c01851] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2024]
Abstract
For nearly 60 years, significant research efforts have been focused on developing strategies for the cycloaddition of bicyclobutanes (BCBs). However, higher-order cycloaddition and catalytic asymmetric cycloaddition of BCBs have been long-standing formidable challenges. Here, we report Pd-catalyzed ligand-controlled, tunable cycloadditions for the divergent synthesis of bridged bicyclic frameworks. The dppb ligand facilitates the formal (5+3) cycloaddition of BCBs and vinyl oxiranes, yielding valuable eight-membered ethers with bridged bicyclic scaffolds in 100% regioselectivity. The Cy-DPEphos ligand promotes selective hetero-[2σ+2σ] cycloadditions to access pharmacologically important 2-oxabicyclo[3.1.1]heptane (O-BCHeps). Furthermore, the corresponding catalytic asymmetric synthesis of O-BCHeps with 94-99% ee has been achieved using chiral (S)-DTBM-Segphos, representing the first catalytic asymmetric cross-dimerization of two strained rings. The obtained O-BCHeps are promising bioisosteres for ortho-substituted benzenes.
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Affiliation(s)
- Jin-Lan Zhou
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P.R. China
| | - Yuanjiu Xiao
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P.R. China
| | - Linke He
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Xin-Yu Gao
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P.R. China
| | - Xue-Chun Yang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P.R. China
| | - Wen-Biao Wu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P.R. China
| | - Guoqiang Wang
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Junliang Zhang
- Department of Chemistry, Fudan University, Shanghai 200438, P.R. China
| | - Jian-Jun Feng
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, 410082, P.R. China
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6
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Wang X, Gao R, Li X. Catalytic Asymmetric Construction of Chiral Polysubstituted 3-Azabicyclo[3.1.1]heptanes by Copper-Catalyzed Stereoselective Formal [4π+2σ] Cycloaddition. J Am Chem Soc 2024. [PMID: 39011580 DOI: 10.1021/jacs.4c06436] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
Abstract
The direct construction of bioisosteric compounds enriched in Csp3 content represents an attractive and dependable approach to imbuing biologically active molecules with enhanced three-dimensional characteristics, finding wide utility across the synthetic and medicinal chemistry community. Despite recent advancements in the synthesis of (aza)-bicyclo[3.1.1]heptanes (BCHeps and aza-BCHeps), which serve as meta-substituted (aza)-arene bioisosteres, the enantioselective assembly of chiral 3-aza-BCHeps remains a coveted goal yet to be achieved. Here, we disclose an unprecedented copper-catalyzed asymmetric formal [4π+2σ] cycloaddition of bicyclo[1.1.0]butanes (BCBs) and azomethine ylides, furnishing a diverse array of enantioenriched 3-aza-BCHeps with exceptional levels of diastereo- and enantioselectivites (51 examples, all >20:1 dr, mostly 97-99% ee). Both mono- and disubstituted BCBs are well compatible with this protocol, offering an enticing route for the efficient synthesis of challenging tetrasubstituted bicyclic products bearing two quaternary centers. The synthetic significance of this methodology is further demonstrated by the successful preparation of several piperidine drug analogues.
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Affiliation(s)
- Xunhua Wang
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), NMPA Key Laboratory for Technology Research and Evaluation of Drug Products, School of Pharmaceutical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250012, China
| | - Rongkai Gao
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), NMPA Key Laboratory for Technology Research and Evaluation of Drug Products, School of Pharmaceutical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250012, China
| | - Xiaoxun Li
- Department of Medicinal Chemistry, Key Laboratory of Chemical Biology (Ministry of Education), NMPA Key Laboratory for Technology Research and Evaluation of Drug Products, School of Pharmaceutical Sciences, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250012, China
- Suzhou Institute of Shandong University, NO.388 Ruoshui Road, SIP, Suzhou, Jiangsu 215123, China
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7
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Zhang K, Tian S, Li W, Yang X, Duan XH, Guo LN, Li P. Lewis Acid-Catalyzed Formal [2π+2σ] Cycloaddition of Bicyclobutanes with Quinoxalin-2(1 H)-ones: Access to Quinoxaline-Fused Aza-Bicyclo[2.1.1]hexanes. Org Lett 2024; 26:5482-5487. [PMID: 38913035 DOI: 10.1021/acs.orglett.4c01775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/25/2024]
Abstract
An efficient synthesis of quinoxaline-fused aza-bicyclo[2.1.1]hexanes bearing multiple quaternary carbon centers via the intermolecular [2π+2σ] cycloaddition of bicyclo[1.1.0]butanes and quinoxalin-2(1H)-ones, facilitated by Lewis acid catalysis, is presented. This reaction is carried out under mild conditions and exhibits a broad substrate scope and excellent functional group tolerance.
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Affiliation(s)
- Kuan Zhang
- Department of Chemistry, School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Material Chemistry and Engineering Research Center of Energy Storage, Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China
| | - Shanghui Tian
- Department of Chemistry, School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Material Chemistry and Engineering Research Center of Energy Storage, Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China
| | - Wenke Li
- Department of Chemistry, School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Material Chemistry and Engineering Research Center of Energy Storage, Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xu Yang
- School of Electrical Engineering, Xi'an Jiaotong University, Xi'an 710049, China
| | - Xin-Hua Duan
- Department of Chemistry, School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Material Chemistry and Engineering Research Center of Energy Storage, Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China
| | - Li-Na Guo
- Department of Chemistry, School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Material Chemistry and Engineering Research Center of Energy Storage, Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China
| | - Pengfei Li
- Department of Chemistry, School of Chemistry, Xi'an Key Laboratory of Sustainable Energy Material Chemistry and Engineering Research Center of Energy Storage, Materials and Devices, Ministry of Education, Xi'an Jiaotong University, Xi'an 710049, China
- Frontier Institute of Science and Technology and State Key Laboratory for Mechanical Behavior of Materials, Xi'an Jiaotong University, Xi'an 710049, China
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8
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Krajczy P, Meyners C, Repity ML, Hausch F. Structure-Based Design of Ultrapotent Tricyclic Ligands for FK506-Binding Proteins. Chemistry 2024:e202401405. [PMID: 38837733 DOI: 10.1002/chem.202401405] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/28/2024] [Accepted: 06/05/2024] [Indexed: 06/07/2024]
Abstract
Access to small, rigid, and sp3-rich molecules is a major limitation in the drug discovery for challenging protein targets. FK506-binding proteins hold high potential as drug targets or enablers of molecular glues but are fastidious in the chemotypes accepted as ligands. We here report an enantioselective synthesis of a highly rigidified pipecolate-mimicking tricyclic scaffold that precisely positions functional groups for interacting with FKBPs. This was enabled by a 14-step gram-scale synthesis featuring anodic oxidation, stereospecific vinylation, and N-acyl iminium cyclization. Structure-based optimization resulted in the discovery of FKBP inhibitors with picomolar biochemical and subnanomolar cellular activity that represent the most potent FKBP ligands known to date.
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Affiliation(s)
- Patryk Krajczy
- Institute for Organic Chemistry and Biochemistry, Technical University Darmstadt, Peter-Grünberg-Straße 4, Darmstadt, 64287, Germany
| | - Christian Meyners
- Institute for Organic Chemistry and Biochemistry, Technical University Darmstadt, Peter-Grünberg-Straße 4, Darmstadt, 64287, Germany
| | - Maximilian L Repity
- Institute for Organic Chemistry and Biochemistry, Technical University Darmstadt, Peter-Grünberg-Straße 4, Darmstadt, 64287, Germany
| | - Felix Hausch
- Institute for Organic Chemistry and Biochemistry, Technical University Darmstadt, Peter-Grünberg-Straße 4, Darmstadt, 64287, Germany
- Centre for Synthetic Biology, Technical University of Darmstadt, Darmstadt, 64283, Germany
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9
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Xiao Y, Wu F, Tang L, Zhang X, Wei M, Wang G, Feng JJ. Divergent Synthesis of Sulfur-Containing Bridged Cyclobutanes by Lewis Acid Catalyzed Formal Cycloadditions of Pyridinium 1,4-Zwitterionic Thiolates and Bicyclobutanes. Angew Chem Int Ed Engl 2024:e202408578. [PMID: 38818620 DOI: 10.1002/anie.202408578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2024] [Revised: 05/27/2024] [Accepted: 05/28/2024] [Indexed: 06/01/2024]
Abstract
Bridged cyclobutanes and sulfur heterocycles are currently under intense investigation as building blocks for pharmaceutical drug design. Two formal cycloaddition modes involving bicyclobutanes (BCBs) and pyridinium 1,4-zwitterionic thiolate derivatives were described to rapidly expand the chemical space of sulfur-containing bridged cyclobutanes. By using Ni(ClO4)2 as the catalyst, an uncommon higher-order (5+3) cycloaddition of BCBs with quinolinium 1,4-zwitterionic thiolate was achieved with broad substrate scope under mild reaction conditions. Furthermore, the first Lewis acid-catalyzed asymmetric polar (5+3) cycloaddition of BCB with pyridazinium 1,4-zwitterionic thiolate was accomplished. In contrast, pyridinium 1,4-zwitterionic thiolates undergo an Sc(OTf)3-catalyzed formal (3+3) reaction with BCBs to generate thia-norpinene products, which represent the initial instance of synthesizing 2-thiabicyclo[3.1.1]heptanes (thia-BCHeps) from BCBs. Moreover, we have successfully used this (3+3) protocol to rapidly prepare thia-BCHeps-substituted analogues of the bioactive molecule Pitofenone. Density functional theory (DFT) computations imply that kinetic factors govern the (5+3) cycloaddition reaction between BCB and quinolinium 1,4-zwitterionic thiolate, whereas the (3+3) reaction involving pyridinium 1,4-zwitterionic thiolates is under thermodynamic control.
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Affiliation(s)
- Yuanjiu Xiao
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, Hunan, 410082, P. R. China
| | - Feng Wu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, Hunan, 410082, P. R. China
| | - Lei Tang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, Hunan, 410082, P. R. China
| | - Xu Zhang
- School of Chemistry & Chemical Engineering, Yangzhou University, Yangzhou, 225002, P.R. China
| | - Mengran Wei
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Guoqiang Wang
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210093, P. R. China
| | - Jian-Jun Feng
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University, Changsha, Hunan, 410082, P. R. China
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10
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Smyrnov OK, Melnykov KP, Pashenko OY, Volochnyuk DM, Ryabukhin SV. Stellane at the Forefront: Derivatization and Reactivity Studies of a Promising Saturated Bioisostere of ortho-Substituted Benzenes. Org Lett 2024. [PMID: 38804566 DOI: 10.1021/acs.orglett.4c01645] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
This work highlights stellane's cage stability and derivatization opportunities. A diverse range of building blocks were synthesized using modern synthesis protocols to demonstrate stellane's reactivity and chemical tolerance across different reaction systems, proving its promise as a bioisosteric scaffold. It can be utilized in scaffold-based molecular design and is superior in terms of topological precision compared to existing ortho isosteres, as well as monosubstituted benzene mimetics, holding the potential to become a robust platform for future medicinal chemistry studies.
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Affiliation(s)
- Oleh K Smyrnov
- Enamine Ltd., 78 Winston Churchill Street, 02094 Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, 60 Volodymyrska Street, 01601 Kyiv, Ukraine
| | - Kostiantyn P Melnykov
- Enamine Ltd., 78 Winston Churchill Street, 02094 Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, 60 Volodymyrska Street, 01601 Kyiv, Ukraine
| | - Olexandr Ye Pashenko
- Enamine Ltd., 78 Winston Churchill Street, 02094 Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, 60 Volodymyrska Street, 01601 Kyiv, Ukraine
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademik Kuhar Street, 02660 Kyiv, Ukraine
| | - Dmytro M Volochnyuk
- Enamine Ltd., 78 Winston Churchill Street, 02094 Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, 60 Volodymyrska Street, 01601 Kyiv, Ukraine
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademik Kuhar Street, 02660 Kyiv, Ukraine
| | - Serhiy V Ryabukhin
- Enamine Ltd., 78 Winston Churchill Street, 02094 Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, 60 Volodymyrska Street, 01601 Kyiv, Ukraine
- Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademik Kuhar Street, 02660 Kyiv, Ukraine
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11
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Liu Y, Wu Z, Shan JR, Yan H, Hao EJ, Shi L. Titanium catalyzed [2σ + 2π] cycloaddition of bicyclo[1.1.0]-butanes with 1,3-dienes for efficient synthesis of stilbene bioisosteres. Nat Commun 2024; 15:4374. [PMID: 38782978 PMCID: PMC11116475 DOI: 10.1038/s41467-024-48494-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2023] [Accepted: 04/30/2024] [Indexed: 05/25/2024] Open
Abstract
Natural stilbenes have shown significant potential in the prevention and treatment of diseases due to their diverse pharmacological activities. Here we present a mild and effective Ti-catalyzed intermolecular radical-relay [2σ + 2π] cycloaddition of bicyclo[1.1.0]-butanes and 1,3-dienes. This transformation enables the synthesis of bicyclo[2.1.1]hexane (BCH) scaffolds containing aryl vinyl groups with excellent regio- and trans-selectivity and broad functional group tolerance, thus offering rapid access to structurally diverse stilbene bioisosteres.
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Affiliation(s)
- Yonghong Liu
- Cancer Hospital of Dalian University of Technology, 116024, Dalian, China
- School of Chemistry, Dalian University of Technology, 116024, Dalian, China
| | - Zhixian Wu
- Cancer Hospital of Dalian University of Technology, 116024, Dalian, China
- School of Chemistry, Dalian University of Technology, 116024, Dalian, China
| | - Jing-Ran Shan
- Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, CA, 90095, USA.
| | - Huaipu Yan
- School of Chemistry, Dalian University of Technology, 116024, Dalian, China
| | - Er-Jun Hao
- Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, 453007, China.
| | - Lei Shi
- Cancer Hospital of Dalian University of Technology, 116024, Dalian, China.
- School of Chemistry, Dalian University of Technology, 116024, Dalian, China.
- Key Laboratory of Green Chemical Media and Reactions, Ministry of Education, School of Chemistry and Chemical Engineering, Henan Normal University, Xinxiang, 453007, China.
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12
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Liang Y, Nematswerani R, Daniliuc CG, Glorius F. Silver-Enabled Cycloaddition of Bicyclobutanes with Isocyanides for the Synthesis of Polysubstituted 3-Azabicyclo[3.1.1]heptanes. Angew Chem Int Ed Engl 2024; 63:e202402730. [PMID: 38441241 DOI: 10.1002/anie.202402730] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2024] [Indexed: 04/17/2024]
Abstract
Synthesis of bicyclic scaffolds has emerged as an important research topic in modern drug development because they can serve as saturated bioisosters to enhance the physicochemical properties and metabolic profiles of drug candidates. Here we report a remarkably simple silver-enabled strategy to access polysubstituted 3-azabicyclo[3.1.1]heptanes in a single operation from readily accessible bicyclobutanes (BCBs) and isocyanides. The process is proposed to involve a formal (3+3)/(3+2)/retro-(3+2) cycloaddition sequence. This novel protocol allows for rapid generation of molecular complexity from simple starting materials, and the products can be easily derivatized, further enriching the BCB cycloaddition chemistry and the growing set of valuable sp3-rich bicyclic building blocks.
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Affiliation(s)
- Yujie Liang
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Ronewa Nematswerani
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Constantin G Daniliuc
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 40, 48149, Münster, Germany
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13
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Levterov VV, Panasiuk Y, Shablykin O, Stashkevych O, Sahun K, Rassokhin A, Sadkova I, Lesyk D, Anisiforova A, Holota Y, Borysko P, Bodenchuk I, Voloshchuk NM, Mykhailiuk PK. 2-Oxabicyclo[2.1.1]hexanes: Synthesis, Properties, and Validation as Bioisosteres of ortho- and meta-Benzenes. Angew Chem Int Ed Engl 2024; 63:e202319831. [PMID: 38465464 DOI: 10.1002/anie.202319831] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Revised: 03/08/2024] [Accepted: 03/11/2024] [Indexed: 03/12/2024]
Abstract
We have developed a general and practical approach towards 2-oxabicyclo[2.1.1]hexanes with two and three exit vectors via an iodocyclization reaction. The obtained compounds have been easily converted into the corresponding building blocks for use in medicinal chemistry. 2-Oxabicyclo[2.1.1]hexanes have been incorporated into the structure of five drugs and three agrochemicals, and validated biologically as bioisosteres of ortho- and meta-benzenes.
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Affiliation(s)
| | | | - Oleh Shablykin
- Enamine Ltd, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
- V. P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, Academician Kukhar Str. 1, 02094, Kyiv, Ukraine
| | - Oleksandr Stashkevych
- Enamine Ltd, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
- Taras Shevchenko National University of Kyiv, Chemistry Department, Volodymyrska Str. 64, 01601, Kyiv, Ukraine
| | - Kateryna Sahun
- Enamine Ltd, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | - Artur Rassokhin
- Enamine Ltd, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | - Iryna Sadkova
- Enamine Ltd, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | - Dmytro Lesyk
- Bienta, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | | | - Yuliia Holota
- Bienta, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | - Petro Borysko
- Bienta, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | | | - Nataliya M Voloshchuk
- National University of Life and Environmental Sciences of Ukraine, V. F. Peresypkin Department of Phytopathology, Heroyiv Oborony Str. 15, 03041, Kyiv, Ukraine
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14
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Diepers HE, Walker JCL. (Bio)isosteres of ortho- and meta-substituted benzenes. Beilstein J Org Chem 2024; 20:859-890. [PMID: 38655554 PMCID: PMC11035989 DOI: 10.3762/bjoc.20.78] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 04/04/2024] [Indexed: 04/26/2024] Open
Abstract
Saturated bioisosteres of substituted benzenes offer opportunities to fine-tune the properties of drug candidates in development. Bioisosteres of para-benzenes, such as those based on bicyclo[1.1.1]pentane, are now very common and can be used to increase aqueous solubility and improve metabolic stability, among other benefits. Bioisosteres of ortho- and meta-benzenes were for a long time severely underdeveloped by comparison. This has begun to change in recent years, with a number of potential systems being reported that can act as bioisosteres for these important fragments. In this review, we will discuss these recent developments, summarizing the synthetic approaches to the different bioisosteres as well as the impact they have on the physiochemical and biological properties of pharmaceuticals and agrochemicals.
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Affiliation(s)
- H Erik Diepers
- Institut für Organische und Biomolekulare Chemie, Georg-August-Universität Göttingen, Tammannstraße 2, 37077 Göttingen, Germany
| | - Johannes C L Walker
- Institut für Organische und Biomolekulare Chemie, Georg-August-Universität Göttingen, Tammannstraße 2, 37077 Göttingen, Germany
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15
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Posz JM, Sharma N, Royalty PA, Liu Y, Salome C, Fessard TC, Brown MK. Synthesis of Borylated Carbocycles by [2 + 2]-Cycloadditions and Photo-Ene Reactions. J Am Chem Soc 2024; 146:10142-10149. [PMID: 38536870 PMCID: PMC11041674 DOI: 10.1021/jacs.4c01557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
Saturated bicyclic compounds make up a valuable class of building blocks in the development of agrochemicals and pharmaceuticals. Here, we present the synthesis of borylated bicyclo[2.1.1]hexanes via crossed [2 + 2]-cycloaddition. Due to the presence of the C-B bond, a variety of structures can be easily prepared that are not accessible by other methods. Moreover, a rare photo-ene reaction is also disclosed, allowing for the diastereoselective synthesis of trisubstituted borylated cyclopentanes.
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Affiliation(s)
- Jarett M Posz
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Neetu Sharma
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Paige A Royalty
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Yanyao Liu
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
| | - Christophe Salome
- SpiroChem AG, Rosental Area, WRO-1047-3, Mattenstrasse 22, Basel 4058, Switzerland
| | - Thomas C Fessard
- SpiroChem AG, Rosental Area, WRO-1047-3, Mattenstrasse 22, Basel 4058, Switzerland
| | - M Kevin Brown
- Department of Chemistry, Indiana University, 800 E. Kirkwood Avenue, Bloomington, Indiana 47405, United States
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16
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Cuadros S, Paut J, Anselmi E, Dagousset G, Magnier E, Dell'Amico L. Light-Driven Synthesis and Functionalization of Bicycloalkanes, Cubanes and Related Bioisosteres. Angew Chem Int Ed Engl 2024; 63:e202317333. [PMID: 38179801 DOI: 10.1002/anie.202317333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 01/02/2024] [Accepted: 01/03/2024] [Indexed: 01/06/2024]
Abstract
Bicycloalkanes, cubanes and their structural analogues have emerged as bioisosteres of (hetero)arenes. To meet increasing demand, the chemical community has developed a plethora of novel synthetic methods. In this review, we assess the progress made in the field of light-driven construction and functionalization of such relevant molecules. We have focused on diverse structural targets, as well as on reaction processes giving access to: (i) [1.1.1]-bicyclopentanes (BCPs); (ii) [2.2.1]-bicyclohexanes (BCHs); (iii) [3.1.1]-bicycloheptanes (BCHeps); and (iv) cubanes; as well as other structurally related scaffolds. Finally, future perspectives dealing with the identification of novel reaction manifolds to access new functionalized bioisosteric units are discussed.
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Affiliation(s)
- Sara Cuadros
- Department of Chemical Sciences, University of Padova, Via Francesco Marzolo 1, 35131, Padova, Italy
| | - Julien Paut
- Department of Chemical Sciences, University of Padova, Via Francesco Marzolo 1, 35131, Padova, Italy
- Institut Lavoisier de Versailles, University of Paris-Saclay, 45 Avenue des Etats-Unis, 78035, Versailles, France
| | - Elsa Anselmi
- Institut Lavoisier de Versailles, University of Paris-Saclay, 45 Avenue des Etats-Unis, 78035, Versailles, France
- Université de Tours, Faculté des Sciences et Techniques, 37200, Tours, France
| | - Guillaume Dagousset
- Institut Lavoisier de Versailles, University of Paris-Saclay, 45 Avenue des Etats-Unis, 78035, Versailles, France
| | - Emmanuel Magnier
- Institut Lavoisier de Versailles, University of Paris-Saclay, 45 Avenue des Etats-Unis, 78035, Versailles, France
| | - Luca Dell'Amico
- Department of Chemical Sciences, University of Padova, Via Francesco Marzolo 1, 35131, Padova, Italy
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17
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Zhang J, Su JY, Zheng H, Li H, Deng WP. Eu(OTf) 3 -Catalyzed Formal Dipolar [4π+2σ] Cycloaddition of Bicyclo-[1.1.0]butanes with Nitrones: Access to Polysubstituted 2-Oxa-3-azabicyclo[3.1.1]heptanes. Angew Chem Int Ed Engl 2024; 63:e202318476. [PMID: 38288790 DOI: 10.1002/anie.202318476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Indexed: 02/21/2024]
Abstract
Herein, we have synthesized multifunctionalized 2-oxa-3-azabicyclo[3.1.1]heptanes, which are considered potential bioisosteres for meta-substituted arenes, through Eu(OTf)3 -catalyzed formal dipolar [4π+2σ] cycloaddition of bicyclo[1.1.0]butanes with nitrones. This methodology represents the initial instance of fabricating bicyclo[3.1.1]heptanes adorned with multiple heteroatoms. The protocol exhibits both mild reaction conditions and a good tolerance for various functional groups. Computational density functional theory calculations support that the reaction mechanism likely involves a nucleophilic addition of nitrones to bicyclo[1.1.0]butanes, succeeded by an intramolecular cyclization. The synthetic utility of this novel protocol has been demonstrated in the concise synthesis of the analogue of Rupatadine.
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Affiliation(s)
- Jian Zhang
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, College of Chemistry and Materials Science, Zhejiang Normal University, 688 Yingbin Road, Jinhua, 321004, China
| | - Jia-Yi Su
- State Key Laboratory of Bioreactor Engineering, Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - Hanliang Zheng
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, College of Chemistry and Materials Science, Zhejiang Normal University, 688 Yingbin Road, Jinhua, 321004, China
| | - Hao Li
- State Key Laboratory of Bioreactor Engineering, Shanghai Key Laboratory of New Drug Design, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - Wei-Ping Deng
- Key Laboratory of the Ministry of Education for Advanced Catalysis Materials, College of Chemistry and Materials Science, Zhejiang Normal University, 688 Yingbin Road, Jinhua, 321004, China
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18
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Pattison G. Assessing the rigidity of cubanes and bicyclo(1.1.1)pentanes as benzene bioisosteres. Bioorg Med Chem 2024; 102:117652. [PMID: 38442523 DOI: 10.1016/j.bmc.2024.117652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Revised: 02/16/2024] [Accepted: 02/19/2024] [Indexed: 03/07/2024]
Abstract
Aromatic rings are critical core substructures in the majority of pharmaceutical compounds. There is much recent interest in replacing aromatic structures with saturated bioisosteres of benzene, which are generally fused or bridged ring systems. These bioisosteres often show improved solubility properties compared to benzene, and may also undergo fewer unwanted metabolic processes. One key reason why aromatic rings have proven so successful in drug design is their rigidity. This paper uses molecular dynamics simulations supported by crystallographic data to assess the rigidity of bicyclopentane and cubane ring systems as two of the most common benzene bioisosteres and compares this to benzene. Whilst a benzene ring is shown to be more flexible than these two bioisosteres in terms of its dihedral ring flexibility, substituents around the ring tend to behave in a much more similar way in both benzene and the bioisosteric systems.
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Affiliation(s)
- Graham Pattison
- School of Chemistry, University of Lincoln, Joseph Banks Laboratories, Green Lane, Lincoln, UK LN6 7DL.
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19
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Zhu WF, Empel C, Pelliccia S, Koenigs RM, Proschak E, Hernandez-Olmos V. Photochemistry in Medicinal Chemistry and Chemical Biology. J Med Chem 2024. [PMID: 38457829 DOI: 10.1021/acs.jmedchem.3c02109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/10/2024]
Abstract
Photochemistry has emerged as a transformative force in organic chemistry, significantly expanding the chemical space accessible for medicinal chemistry. Light-induced reactions enable the efficient synthesis of intricate organic structures and have found applications throughout the different stages of the drug discovery and development processes. Moreover, photochemical techniques provide innovative solutions in chemical biology, allowing precise spatiotemporal drug activation and targeted delivery. In this Perspective, we highlight the already numerous remarkable applications and the even more promising future of photochemistry in medicinal chemistry and chemical biology.
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Affiliation(s)
- W Felix Zhu
- Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany
| | - Claire Empel
- RWTH Aachen University, Institute of Organic Chemistry, Landoltweg 1, D-52074 Aachen, Germany
| | - Sveva Pelliccia
- Department of Pharmacy (DoE 2023-2027), University of Naples Federico II, via D. Montesano 49, 80131 Naples, Italy
| | - Rene M Koenigs
- RWTH Aachen University, Institute of Organic Chemistry, Landoltweg 1, D-52074 Aachen, Germany
| | - Ewgenij Proschak
- Institute of Pharmaceutical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 9, 60438 Frankfurt am Main, Germany
- Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Theodor-Stern-Kai 7, 60596 Frankfurt am Main, Germany
| | - Victor Hernandez-Olmos
- Fraunhofer Institute for Translational Medicine and Pharmacology ITMP, Theodor-Stern-Kai 7, 60596 Frankfurt am Main, Germany
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20
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Dutta S, Lu YL, Erchinger JE, Shao H, Studer E, Schäfer F, Wang H, Rana D, Daniliuc CG, Houk KN, Glorius F. Double Strain-Release [2π+2σ]-Photocycloaddition. J Am Chem Soc 2024; 146:5232-5241. [PMID: 38350439 DOI: 10.1021/jacs.3c11563] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/15/2024]
Abstract
In pursuit of potent pharmaceutical candidates and to further improve their chemical traits, small ring systems can serve as a potential starting point. Small ring units have the additional merit of loaded strain at their core, making them suitable reactants as they can capitalize on this intrinsic driving force. With the introduction of cyclobutenone as a strained precursor to ketene, the photocycloaddition with another strained unit, bicyclo[1.1.0]butane (BCB), enables the reactivity of both π-units in the transient ketene. This double strain-release driven [2π+2σ]-photocycloaddition promotes the synthesis of diverse heterobicyclo[2.1.1]hexane units, a pharmaceutically relevant bioisostere. The effective reactivity under catalyst-free conditions with a high functional group tolerance defines its synthetic utility. Experimental mechanistic studies and density functional theory (DFT) calculations suggest that the [2π+2σ]-photocycloaddition takes place via a triplet mechanism.
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Affiliation(s)
- Subhabrata Dutta
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Yi-Lin Lu
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Johannes E Erchinger
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Huiling Shao
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Emanuel Studer
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Felix Schäfer
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Huamin Wang
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Debanjan Rana
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - Constantin G Daniliuc
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
| | - K N Houk
- Department of Chemistry and Biochemistry, University of California, Los Angeles, California 90095, United States
| | - Frank Glorius
- Organisch-Chemisches Institut, Universität Münster, Corrensstraße 36, 48149 Münster, Germany
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21
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Anderson JM, Poole DL, Cook GC, Murphy JA, Measom ND. Organometallic Bridge Diversification of Bicyclo[1.1.1]pentanes. Chemistry 2024; 30:e202304070. [PMID: 38117748 DOI: 10.1002/chem.202304070] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 12/19/2023] [Accepted: 12/19/2023] [Indexed: 12/22/2023]
Abstract
Bicyclo[1.1.1]pentane (BCP) derivatives have attracted significant recent interest in drug discovery as alkyne, tert-butyl and arene bioisosteres, where their incorporation is frequently associated with increased compound solubility and metabolic stability. While strategies for functionalisation of the bridgehead (1,3) positions are extensively developed, platforms allowing divergent substitution at the bridge (2,4,5) positions remain limited. Recent reports have introduced 1-electron strategies for arylation and incorporation of a small range of other substituents, but are limited in terms of scope, yields or practical complexity. Herein, we show the synthesis of diverse 1,2,3-trifunctionalised BCPs through lithium-halogen exchange of a readily accessible BCP bromide. When coupled with medicinally relevant product derivatisations, our developed 2-electron "late stage" approach provides rapid and straightforward access to unprecedented BCP structural diversity (>20 hitherto-unknown motifs reported). Additionally, we describe a method for the synthesis of enantioenriched "chiral-at-BCP" bicyclo[1.1.1]pentanes through a novel stereoselective bridgehead desymmetrisation.
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Affiliation(s)
- Joseph M Anderson
- Medicinal Chemistry, GSK, GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, UK, SG1 2NY
- Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, UK, G1 1XL
| | - Darren L Poole
- Medicinal Chemistry, GSK, GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, UK, SG1 2NY
| | - Gemma C Cook
- Medicinal Chemistry, GSK, GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, UK, SG1 2NY
| | - John A Murphy
- Department of Pure and Applied Chemistry, University of Strathclyde, 295 Cathedral Street, Glasgow, UK, G1 1XL
| | - Nicholas D Measom
- Medicinal Chemistry, GSK, GSK Medicines Research Centre, Gunnels Wood Road, Stevenage, UK, SG1 2NY
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22
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Prysiazhniuk K, Datsenko OP, Polishchuk O, Shulha S, Shablykin O, Nikandrova Y, Horbatok K, Bodenchuk I, Borysko P, Shepilov D, Pishel I, Kubyshkin V, Mykhailiuk PK. Spiro[3.3]heptane as a Saturated Benzene Bioisostere. Angew Chem Int Ed Engl 2024; 63:e202316557. [PMID: 38251921 DOI: 10.1002/anie.202316557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Indexed: 01/23/2024]
Abstract
The spiro[3.3]heptane core, with the non-coplanar exit vectors, was shown to be a saturated benzene bioisostere. This scaffold was incorporated into the anticancer drug sonidegib (instead of the meta-benzene), the anticancer drug vorinostat (instead of the phenyl ring), and the anesthetic drug benzocaine (instead of the para-benzene). The patent-free saturated analogs obtained showed a high potency in the corresponding biological assays.
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Affiliation(s)
| | | | | | | | - Oleh Shablykin
- Enamine Ltd., Winston Churchill Str. 78, 02094, Kyiv, Ukraine
- V. P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry NAS of Ukraine, 02094, Kyiv, Ukraine
| | | | | | | | - Petro Borysko
- Bienta, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
| | | | - Iryna Pishel
- Bienta, Winston Churchill Str. 78, 02094, Kyiv, Ukraine
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23
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Semeno VV, Vasylchenko VO, Fesun IM, Ruzhylo LY, Kipriianov MO, Melnykov KP, Skreminskyi A, Iminov R, Mykhailiuk P, Vashchenko BV, Grygorenko OO. Bicyclo[m.n.k]alkane Building Blocks as Promising Benzene and Cycloalkane Isosteres: Multigram Synthesis, Physicochemical and Structural Characterization. Chemistry 2024; 30:e202303859. [PMID: 38149408 DOI: 10.1002/chem.202303859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Revised: 12/25/2023] [Accepted: 12/27/2023] [Indexed: 12/28/2023]
Abstract
Electrophilic double bond functionalization - intramolecular enolate alkylation sequence was used to obtain a series of bridged and fused bicyclo[m.n.k]alkane derivatives (i. e., bicyclo[4.1.1]octanes, bicyclo[2.2.1]heptanes, bicyclo[3.2.1]octanes, bicyclo[3.1.0]hexanes, and bicyclo[4.2.0]heptanes). The scope and limitations of the method were established, and applicability to the multigram synthesis of target bicyclic compounds was illustrated. Using the developed protocols, over 50 mono- and bifunctional building blocks relevant to medicinal chemistry were prepared. The synthesized compounds are promising isosteres of benzene and cycloalkane rings, which is confirmed by their physicochemical and structural characterization (pKa , LogP, and exit vector parameters (EVP)). "Rules of thumb" for the upcoming isosteric replacement studies were proposed.
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Affiliation(s)
- Volodymyr V Semeno
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyїv, 01601, Ukraine
| | | | - Ihor M Fesun
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
| | - Liudmyla Yu Ruzhylo
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
- National Technical University of Ukraine " Igor Sikorsky Kyiv Polytechnic Institute", Beresteiskyi Ave. 37, Kyїv, 03056, Ukraine
| | - Mykhailo O Kipriianov
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
- National Technical University of Ukraine " Igor Sikorsky Kyiv Polytechnic Institute", Beresteiskyi Ave. 37, Kyїv, 03056, Ukraine
| | - Kostiantyn P Melnykov
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyїv, 01601, Ukraine
| | | | - Rustam Iminov
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
| | | | - Bohdan V Vashchenko
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyїv, 01601, Ukraine
| | - Oleksandr O Grygorenko
- Enamine Ltd., Chervonotkatska Street 78, Kyїv, 02094, Ukraine
- Taras Shevchenko National University of Kyiv, Volodymyrska Street 60, Kyїv, 01601, Ukraine
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24
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Dutta S, Erchinger JE, Strieth-Kalthoff F, Kleinmans R, Glorius F. Energy transfer photocatalysis: exciting modes of reactivity. Chem Soc Rev 2024; 53:1068-1089. [PMID: 38168974 DOI: 10.1039/d3cs00190c] [Citation(s) in RCA: 24] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Excited (triplet) states offer a myriad of attractive synthetic pathways, including cycloadditions, selective homolytic bond cleavages and strain-release chemistry, isomerizations, deracemizations, or the fusion with metal catalysis. Recent years have seen enormous advantages in enabling these reactivity modes through visible-light-mediated triplet-triplet energy transfer catalysis (TTEnT). This tutorial review provides an overview of this emerging strategy for synthesizing sought-after organic motifs in a mild, selective, and sustainable manner. Building on the photophysical foundations of energy transfer, this review also discusses catalyst design, as well as the challenges and opportunities of energy transfer catalysis.
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Affiliation(s)
- Subhabrata Dutta
- University of Münster, Organisch-Chemisches Institut, Corrensstraße 36, 48149 Münster, Germany.
| | - Johannes E Erchinger
- University of Münster, Organisch-Chemisches Institut, Corrensstraße 36, 48149 Münster, Germany.
| | - Felix Strieth-Kalthoff
- University of Münster, Organisch-Chemisches Institut, Corrensstraße 36, 48149 Münster, Germany.
| | - Roman Kleinmans
- University of Münster, Organisch-Chemisches Institut, Corrensstraße 36, 48149 Münster, Germany.
| | - Frank Glorius
- University of Münster, Organisch-Chemisches Institut, Corrensstraße 36, 48149 Münster, Germany.
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25
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Matador E, Tilby MJ, Saridakis I, Pedrón M, Tomczak D, Llaveria J, Atodiresei I, Merino P, Ruffoni A, Leonori D. A Photochemical Strategy for the Conversion of Nitroarenes into Rigidified Pyrrolidine Analogues. J Am Chem Soc 2023; 145:27810-27820. [PMID: 38059920 DOI: 10.1021/jacs.3c10863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/08/2023]
Abstract
Bicyclic amines are important motifs for the preparation of bioactive materials. These species have well-defined exit vectors that enable accurate disposition of substituents toward specific areas of chemical space. Of all possible skeletons, the 2-azabicyclo[3.2.0]heptane framework is virtually absent from MedChem libraries due to a paucity of synthetic methods for its preparation. Here, we report a modular synthetic strategy that utilizes nitroarenes as flat and easy-to-functionalize feedstocks for the assembly of these sp3-rich materials. Mechanistically, this approach exploits two concomitant photochemical processes that sequentially ring-expand the nitroarene into an azepine and then fold it into a rigid bicycle pyrroline by means of singlet nitrene-mediated nitrogen insertion and excited-state-4π electrocyclization. A following hydrogenolysis provides, with full diastereocontrol, the desired bicyclic amine derivatives whereby the aromatic substitution pattern has been translated into the one of the three-dimensional heterocycle. These molecules can be considered rigid pyrrolidine analogues with a well-defined orientation of their substituents. Furthermore, unsupervised clustering of an expansive virtual database of saturated N-heterocycles revealed these derivatives as effective isosteres of rigidified piperidines. Overall, this platform enables the conversion of nitroarene feedstocks into complex sp3-rich heterocycles of potential interest to drug development.
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Affiliation(s)
- Esteban Matador
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
- Departamento de Química Orgánica, Universidad de Sevilla and Centro de Innovación en Química Avanzada (ORFEO-CINQA), C/Prof. García González 1, 41012 Sevilla, Spain
| | - Michael J Tilby
- Department of Chemistry, University of Manchester, M13 9PL Manchester, U.K
| | - Iakovos Saridakis
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Manuel Pedrón
- Institute of Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, 50009 Zaragoza, Spain
| | - Dawid Tomczak
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Josep Llaveria
- Global Discovery Chemistry, Therapeutics Discovery, Janssen Research & Development, Janssen Research & Development, Janssen-Cilag S.A., Jarama 75A, 45007 Toledo, Spain
| | - Iuliana Atodiresei
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Pedro Merino
- Institute of Biocomputation and Physics of Complex Systems (BIFI), University of Zaragoza, 50009 Zaragoza, Spain
| | - Alessandro Ruffoni
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Daniele Leonori
- Institute of Organic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
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26
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Denisenko A, Garbuz P, Makovetska Y, Shablykin O, Lesyk D, Al-Maali G, Korzh R, Sadkova IV, Mykhailiuk PK. 1,2-Disubstituted bicyclo[2.1.1]hexanes as saturated bioisosteres of ortho-substituted benzene. Chem Sci 2023; 14:14092-14099. [PMID: 38098705 PMCID: PMC10718076 DOI: 10.1039/d3sc05121h] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Accepted: 10/25/2023] [Indexed: 12/17/2023] Open
Abstract
Bicyclo[2.1.1]hexanes have been synthesized, characterized, and biologically validated as saturated bioisosteres of the ortho-substituted benzene ring. The incorporation of the 1,2-disubstituted bicyclo[2.1.1]hexane core into the structure of fungicides boscalid (BASF), bixafen (Bayer CS), and fluxapyroxad (BASF) gave saturated patent-free analogs with high antifungal activity.
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Affiliation(s)
- Aleksandr Denisenko
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
| | - Pavel Garbuz
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
| | | | - Oleh Shablykin
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
- V. P. Kukhar Institute of Bioorganic Chemistry and Petrochemistry of the NAS of Ukraine 02094 Kyiv Ukraine
| | - Dmytro Lesyk
- Bienta Winston Churchill st. 78 02094 Kyiv Ukraine
| | - Galeb Al-Maali
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
- Institute of Botany of the National Academy of Sciences of Ukraine 02094 Kyiv Ukraine
| | - Rodion Korzh
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
| | - Iryna V Sadkova
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
| | - Pavel K Mykhailiuk
- Enamine Ltd Winston Churchill st. 78 02094 Kyiv Ukraine www.mykhailiukchem.org
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27
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Tang L, Xiao Y, Wu F, Zhou JL, Xu TT, Feng JJ. Silver-Catalyzed Dearomative [2π+2σ] Cycloadditions of Indoles with Bicyclobutanes: Access to Indoline Fused Bicyclo[2.1.1]hexanes. Angew Chem Int Ed Engl 2023; 62:e202310066. [PMID: 37822277 DOI: 10.1002/anie.202310066] [Citation(s) in RCA: 19] [Impact Index Per Article: 19.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Revised: 10/11/2023] [Accepted: 10/11/2023] [Indexed: 10/13/2023]
Abstract
Bicyclo[2.1.1]hexanes (BCHs) are becoming ever more important in drug design and development as bridged scaffolds that provide underexplored chemical space, but are difficult to access. Here a silver-catalyzed dearomative [2π+2σ] cycloaddition strategy for the synthesis of indoline fused BCHs from N-unprotected indoles and bicyclobutane precursors is described. The strain-release dearomative cycloaddition operates under mild conditions, tolerating a wide range of functional groups. It is capable of forming BCHs with up to four contiguous quaternary carbon centers, achieving yields of up to 99 %. In addition, a scale-up experiment and the synthetic transformations of the cycloadducts further highlighted the synthetic utility.
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Affiliation(s)
- Lei Tang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha, Hunan, 410082, P. R. China
| | - Yuanjiu Xiao
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha, Hunan, 410082, P. R. China
| | - Feng Wu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha, Hunan, 410082, P. R. China
| | - Jin-Lan Zhou
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha, Hunan, 410082, P. R. China
| | - Tong-Tong Xu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha, Hunan, 410082, P. R. China
| | - Jian-Jun Feng
- State Key Laboratory of Chemo/Biosensing and Chemometrics, Advanced Catalytic Engineering Research Center of the Ministry of Education, College of Chemistry and Chemical Engineering, Hunan University Changsha, Hunan, 410082, P. R. China
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28
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Nguyen TVT, Bossonnet A, Wodrich MD, Waser J. Photocatalyzed [2σ + 2σ] and [2σ + 2π] Cycloadditions for the Synthesis of Bicyclo[3.1.1]heptanes and 5- or 6-Membered Carbocycles. J Am Chem Soc 2023; 145:25411-25421. [PMID: 37934629 DOI: 10.1021/jacs.3c09789] [Citation(s) in RCA: 25] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2023]
Abstract
We report the use of photocatalysis for the homolytic ring-opening of carbonyl cyclopropanes. In contrast to previous studies, our approach does not require a metal cocatalyst or a strong reductant. The carbonyl cyclopropanes can be employed for both [2σ + 2σ] and [2σ + 2π] annulation with either alkenes/alkynes or bicyclo[1.1.0]butanes, yielding cyclopent-anes/-enes and bicyclo[3.1.1]heptanes (BCHs), respectively. BCHs are promising bioisosteres for 1,2,4,5 tetra-substituted aromatic rings. Mechanistic studies, including density functional theory computation and a trapping experiment with DMPO, support a 1,3-biradical generated from cyclopropane as a key intermediate for these transformations.
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Affiliation(s)
- Tin V T Nguyen
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemistry and Chemical Engineering, Ecole Polytechnique Federale de Lausanne, Lausanne Ch-1015, Switzerland
| | - André Bossonnet
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemistry and Chemical Engineering, Ecole Polytechnique Federale de Lausanne, Lausanne Ch-1015, Switzerland
| | - Matthew D Wodrich
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemistry and Chemical Engineering, Ecole Polytechnique Federale de Lausanne, Lausanne Ch-1015, Switzerland
| | - Jerome Waser
- Laboratory of Catalysis and Organic Synthesis, Institute of Chemistry and Chemical Engineering, Ecole Polytechnique Federale de Lausanne, Lausanne Ch-1015, Switzerland
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29
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Levterov VV, Panasiuk Y, Sahun K, Stashkevych O, Badlo V, Shablykin O, Sadkova I, Bortnichuk L, Klymenko-Ulianov O, Holota Y, Lachmann L, Borysko P, Horbatok K, Bodenchuk I, Bas Y, Dudenko D, Mykhailiuk PK. 2-Oxabicyclo[2.2.2]octane as a new bioisostere of the phenyl ring. Nat Commun 2023; 14:5608. [PMID: 37783681 PMCID: PMC10545790 DOI: 10.1038/s41467-023-41298-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Accepted: 08/30/2023] [Indexed: 10/04/2023] Open
Abstract
The phenyl ring is a basic structural element in chemistry. Here, we show the design, synthesis, and validation of its new saturated bioisostere with improved physicochemical properties - 2-oxabicyclo[2.2.2]octane. The design of the structure is based on the analysis of the advantages and disadvantages of the previously used bioisosteres: bicyclo[1.1.1]pentane, bicyclo[2.2.2]octane, and cubane. The key synthesis step is the iodocyclization of cyclohexane-containing alkenyl alcohols with molecular iodine in acetonitrile. 2-Oxabicyclo[2.2.2]octane core is incorporated into the structure of Imatinib and Vorinostat (SAHA) drugs instead of the phenyl ring. In Imatinib, such replacement leads to improvement of physicochemical properties: increased water solubility, enhanced metabolic stability, and reduced lipophilicity. In Vorinostat, such replacement results in a new bioactive analog of the drug. This study enhances the repertoire of available saturated bioisosteres of (hetero)aromatic rings for the use in drug discovery projects.
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Affiliation(s)
| | | | - Kateryna Sahun
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Valentyn Badlo
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | - Oleh Shablykin
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
- V. P. Kukhar IBOPC of the NASciences of Ukraine, Academician Kukhar Str. 1, 02094, Kyiv, Ukraine
| | - Iryna Sadkova
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | - Lina Bortnichuk
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Yuliia Holota
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Petro Borysko
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | | | - Iryna Bodenchuk
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
| | - Yuliia Bas
- Taras Shevchenko National University of Kyiv, Chemistry Department, Volodymyrska 64, 01601, Kyiv, Ukraine
| | - Dmytro Dudenko
- Enamine Ltd., Winston Churchill street 78, 02094, Kyiv, Ukraine
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30
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Abstract
The concept of strain in organic compounds is as old as modern organic chemistry and was initially introduced to justify the synthetic setbacks along the synthesis of small ring systems (pars construens of strain). In the last decades, chemists have developed an arsenal of strain-release reactions (pars destruens of strain) which can generate─with significant driving force─rigid aliphatic systems that can act as three-dimensional alternatives to (hetero)arenes. Photocatalysis added an additional dimension to strain-release processes by leveraging the energy of photons to create chemical complexity under mild conditions. This perspective presents the latest advancements in strain-release photocatalysis─with emphases on mechanisms, catalytic cycles, and current limitations─the unique chemical architectures that can be produced, and possible future directions.
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Affiliation(s)
- Peter Bellotti
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany
- Department of Pharmacology, Weill Cornell Medicine, 1300 York Avenue, New York 10021, New York United States
| | - Frank Glorius
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, 48149 Münster, Germany
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31
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Dibchak D, Snisarenko M, Mishuk A, Shablykin O, Bortnichuk L, Klymenko-Ulianov O, Kheylik Y, Sadkova IV, Rzepa HS, Mykhailiuk PK. General Synthesis of 3-Azabicyclo[3.1.1]heptanes and Evaluation of Their Properties as Saturated Isosteres. Angew Chem Int Ed Engl 2023; 62:e202304246. [PMID: 37232421 DOI: 10.1002/anie.202304246] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 05/27/2023]
Abstract
A general approach to 3-azabicyclo[3.1.1]heptanes by reduction of spirocyclic oxetanyl nitriles was developed. The mechanism, scope, and scalability of this transformation were studied. The core was incorporated into the structure of the antihistamine drug Rupatidine instead of the pyridine ring, which led to a dramatic improvement in physicochemical properties.
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Affiliation(s)
| | | | - Artem Mishuk
- Enamine Ltd., Chervonotkatska 60, 02094, Kyiv, Ukraine
| | - Oleh Shablykin
- Enamine Ltd., Chervonotkatska 60, 02094, Kyiv, Ukraine
- Institute of Bioorganic Chemistry and Petrochemistry, National Academy of Sciences of Ukraine, Akademika Kukharya, 1, 02094, Kyiv, Ukraine
| | | | | | | | | | - Henry S Rzepa
- Department of Chemistry, Molecular Sciences Research Hub, White City Campus, Imperial College London, 82 Wood Lane, London, W12 0BZ, UK
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32
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Liang Y, Paulus F, Daniliuc CG, Glorius F. Catalytic Formal [2π+2σ] Cycloaddition of Aldehydes with Bicyclobutanes: Expedient Access to Polysubstituted 2-Oxabicyclo[2.1.1]hexanes. Angew Chem Int Ed Engl 2023; 62:e202305043. [PMID: 37307521 DOI: 10.1002/anie.202305043] [Citation(s) in RCA: 30] [Impact Index Per Article: 30.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2023] [Revised: 05/17/2023] [Accepted: 06/12/2023] [Indexed: 06/14/2023]
Abstract
Synthesis of bicyclic scaffolds has attracted tremendous attention because they are playing an important role as saturated bioisosteres of benzenoids in modern drug discovery. Here, we report a BF3 -catalyzed [2π+2σ] cycloaddition of aldehydes with bicyclo[1.1.0]butanes (BCBs) to access polysubstituted 2-oxabicyclo[2.1.1]hexanes. A new kind of BCB containing an acyl pyrazole group was invented, which not only significantly facilitates the reactions, but can also serve as a handle for diverse downstream transformations. Furthermore, aryl and vinyl epoxides can also be utilized as substrates which undergo cycloaddition with BCBs after in situ rearrangement to aldehydes. We anticipate that our results will promote access to challenging sp3 -rich bicyclic frameworks and the exploration of BCB-based cycloaddition chemistry.
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Affiliation(s)
- Yujie Liang
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Fritz Paulus
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Constantin G Daniliuc
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149, Münster, Germany
| | - Frank Glorius
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149, Münster, Germany
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