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For: Arnold BJ, Huang IT, Hanage WP. Horizontal gene transfer and adaptive evolution in bacteria. Nat Rev Microbiol 2022;20:206-18. [PMID: 34773098 DOI: 10.1038/s41579-021-00650-4] [Citation(s) in RCA: 245] [Impact Index Per Article: 122.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/04/2021] [Indexed: 11/09/2022]
Number Cited by Other Article(s)
1
Tsoumtsa Meda L, Lagarde J, Guillier L, Roussel S, Douarre PE. Using GWAS and Machine Learning to Identify and Predict Genetic Variants Associated with Foodborne Bacteria Phenotypic Traits. Methods Mol Biol 2025;2852:223-253. [PMID: 39235748 DOI: 10.1007/978-1-0716-4100-2_16] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
2
Wang J, Li P, Di X, Lu H, Wei H, Zhi S, Fewer DP, He S, Liu L. Phylogenomic analysis uncovers an unexpected capacity for the biosynthesis of secondary metabolites in Pseudoalteromonas. Eur J Med Chem 2024;279:116840. [PMID: 39244863 DOI: 10.1016/j.ejmech.2024.116840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Revised: 08/07/2024] [Accepted: 08/24/2024] [Indexed: 09/10/2024]
3
Xi Y, Li X, Liu L, Xiu F, Yi X, Chen H, You X. Sneaky tactics: Ingenious immune evasion mechanisms of Bartonella. Virulence 2024;15:2322961. [PMID: 38443331 PMCID: PMC10936683 DOI: 10.1080/21505594.2024.2322961] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2023] [Accepted: 02/20/2024] [Indexed: 03/07/2024]  Open
4
Zhu J, Wang J, Kang W, Zhang X, Kerdsin A, Yao H, Zheng H, Wu Z. Streptococcus suis serotype 4: a population with the potential pathogenicity in humans and pigs. Emerg Microbes Infect 2024;13:2352435. [PMID: 38703011 PMCID: PMC11097711 DOI: 10.1080/22221751.2024.2352435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Accepted: 05/02/2024] [Indexed: 05/06/2024]
5
Fang Y, Chen C, Cui B, Li H, Zhou D. Key role of NH4+-N in the removal of oxacillin during managed aquifer recharge: Reconsidering the recharge limitation. WATER RESEARCH 2024;266:122375. [PMID: 39260194 DOI: 10.1016/j.watres.2024.122375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Revised: 08/26/2024] [Accepted: 09/02/2024] [Indexed: 09/13/2024]
6
Gao Y, Zhou S, Yang Z, Tang Z, Su Y, Duan Y, Song J, Huang Z, Wang Y. Unveiling the role of uranium in enhancing the transformation of antibiotic resistance genes. JOURNAL OF HAZARDOUS MATERIALS 2024;479:135624. [PMID: 39208634 DOI: 10.1016/j.jhazmat.2024.135624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 08/04/2024] [Accepted: 08/21/2024] [Indexed: 09/04/2024]
7
Wang J, Shen C, Sun J, Cheng L, Zhao G, Li MM. Metagenomic analysis reveals a dynamic rumen microbiome with diversified adaptive functions in response to dietary protein restriction and re-alimentation. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;949:174618. [PMID: 38986687 DOI: 10.1016/j.scitotenv.2024.174618] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 07/06/2024] [Accepted: 07/06/2024] [Indexed: 07/12/2024]
8
Wang H, Liu L, Luo Z, Chen J. Spatiotemporal dynamics of dinoflagellate communities in the Taiwan Strait and their correlations with micro-eukaryotic and bacterial communities. MARINE POLLUTION BULLETIN 2024;208:117059. [PMID: 39366059 DOI: 10.1016/j.marpolbul.2024.117059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2024] [Revised: 09/11/2024] [Accepted: 09/25/2024] [Indexed: 10/06/2024]
9
Li L, Ge Z, Liu S, Zheng K, Li Y, Chen K, Fu Y, Lei X, Cui Z, Wang Y, Huang J, Liu Y, Duan M, Sun Z, Chen J, Li L, Shen P, Wang G, Chen J, Li R, Li C, Yang Z, Ning Y, Luo A, Chen B, Seim I, Liu X, Wang F, Yao Y, Guo F, Yang M, Liu CH, Fan G, Wang L, Yang D, Zhang L. Multi-omics landscape and molecular basis of radiation tolerance in a tardigrade. Science 2024;386:eadl0799. [PMID: 39446960 DOI: 10.1126/science.adl0799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Accepted: 09/05/2024] [Indexed: 10/26/2024]
10
Mahata T, Kanarek K, Goren MG, Marimuthu Ragavan R, Bosis E, Qimron U, Salomon D. Gamma-Mobile-Trio systems are mobile elements rich in bacterial defensive and offensive tools. Nat Microbiol 2024:10.1038/s41564-024-01840-5. [PMID: 39443754 DOI: 10.1038/s41564-024-01840-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 09/25/2024] [Indexed: 10/25/2024]
11
Qi H, Lv J, Liao J, Jin J, Ren Y, Tao Y, Wang D, Alvarez PJJ, Yu P. Metagenomic insights into microalgae-bacterium-virus interactions and viral functions in phycosphere facing environmental fluctuations. WATER RESEARCH 2024;268:122676. [PMID: 39471530 DOI: 10.1016/j.watres.2024.122676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2024] [Revised: 10/18/2024] [Accepted: 10/19/2024] [Indexed: 11/01/2024]
12
Xu A, Lu L, Zhang W, Song X, Li G, Miao Y, Li R, Chen M, Liu Q, Li D. Microevolution of Bartonella grahamii driven by geographic and host factors. mSystems 2024;9:e0108924. [PMID: 39345150 PMCID: PMC11494883 DOI: 10.1128/msystems.01089-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Accepted: 09/03/2024] [Indexed: 10/01/2024]  Open
13
Solanki R, Makwana N, Kumar R, Joshi M, Patel A, Bhatia D, Sahoo DK. Nanomedicines as a cutting-edge solution to combat antimicrobial resistance. RSC Adv 2024;14:33568-33586. [PMID: 39439838 PMCID: PMC11495475 DOI: 10.1039/d4ra06117a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Accepted: 10/14/2024] [Indexed: 10/25/2024]  Open
14
Mishra S, Ren Y, Sun X, Lian Y, Singh AK, Sharma N, Shikhar KC. Microplastics-biofilm in aquatic ecosystem: Formation, pollutants complexation, greenhouse gas emission and ecotoxicology. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024;370:122930. [PMID: 39423625 DOI: 10.1016/j.jenvman.2024.122930] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/14/2024] [Revised: 09/20/2024] [Accepted: 10/12/2024] [Indexed: 10/21/2024]
15
Liu Y, Miao B, Li W, Hu X, Bai F, Abuduresule Y, Liu Y, Zheng Z, Wang W, Chen Z, Zhu S, Feng X, Cao P, Ping W, Yang R, Dai Q, Liu F, Tian C, Yang Y, Fu Q. Bronze Age cheese reveals human-Lactobacillus interactions over evolutionary history. Cell 2024;187:5891-5900.e8. [PMID: 39326418 DOI: 10.1016/j.cell.2024.08.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2024] [Revised: 06/01/2024] [Accepted: 08/07/2024] [Indexed: 09/28/2024]
16
Jaszczur MM, Pham P, Ojha D, Pham CQ, McDonald JP, Woodgate R, Goodman MF. Pathogen-encoded Rum DNA polymerase drives rapid bacterial drug resistance. Nucleic Acids Res 2024:gkae899. [PMID: 39413207 DOI: 10.1093/nar/gkae899] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 09/24/2024] [Accepted: 09/27/2024] [Indexed: 10/18/2024]  Open
17
Wu X, Jia W, Fang Z, Sun H, Wang G, Liu L, Zheng M, Chen G. Cyanobacteria mediate the dissemination of bacterial antibiotic resistance through conjugal transfer. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024;359:124592. [PMID: 39047887 DOI: 10.1016/j.envpol.2024.124592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2024] [Revised: 07/18/2024] [Accepted: 07/20/2024] [Indexed: 07/27/2024]
18
Jia C, Huang L, Zhou H, Cao Q, Wang Z, He F, Li Y, Yue M. A global genome dataset for Salmonella Gallinarum recovered between 1920 and 2024. Sci Data 2024;11:1094. [PMID: 39375387 PMCID: PMC11458892 DOI: 10.1038/s41597-024-03908-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2024] [Accepted: 09/19/2024] [Indexed: 10/09/2024]  Open
19
Bellinazzo F, Nadal Bigas J, Hogers RAH, Kodde J, van der Wal F, Kokkinopoulou P, Duijts KTM, Angenent GC, van Dijk ADJ, van Velzen R, Immink RGH. Evolutionary origin and functional investigation of the widely conserved plant PEBP gene STEPMOTHER OF FT AND TFL1 (SMFT). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024. [PMID: 39364782 DOI: 10.1111/tpj.17057] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Accepted: 09/19/2024] [Indexed: 10/05/2024]
20
Shepherd MJ, Fu T, Harrington NE, Kottara A, Cagney K, Chalmers JD, Paterson S, Fothergill JL, Brockhurst MA. Ecological and evolutionary mechanisms driving within-patient emergence of antimicrobial resistance. Nat Rev Microbiol 2024;22:650-665. [PMID: 38689039 DOI: 10.1038/s41579-024-01041-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 03/13/2024] [Indexed: 05/02/2024]
21
Li G, Han L, Xia LJ, Gao A, Li ZP, Zhou SY, Wan L, Deng Y, Zhou TH, Lu XY, Luo Y, Liang DS, Wu GT, Tang SQ, Lian XL, Ren H, Liao XP, Chen L, Sun J. Waterborne polyurethane nanoparticles incorporating linoleic acid as a potential strategy for controlling antibiotic resistance spread in the mammalian intestine. Mater Today Bio 2024;28:101181. [PMID: 39221217 PMCID: PMC11364912 DOI: 10.1016/j.mtbio.2024.101181] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 07/10/2024] [Accepted: 08/03/2024] [Indexed: 09/04/2024]  Open
22
Cai M, Zhang H, Zheng L, Tang X. A global microbiome analysis reveals the ecological feature of Tistrella and its production of the bioactive didemnins in the marine ecosystem. MARINE POLLUTION BULLETIN 2024;207:116939. [PMID: 39243471 DOI: 10.1016/j.marpolbul.2024.116939] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 09/01/2024] [Accepted: 09/02/2024] [Indexed: 09/09/2024]
23
Pei Z, Liu Y, Zhao F, Wang H, Zhao J, Chen W, Lu W. Antibiotic Susceptibility Testing and Establishment of Tentative Species-Specific Microbiological Cut-off Values for Bifidobacteria Isolated from Chinese Population. Probiotics Antimicrob Proteins 2024;16:1657-1672. [PMID: 37515711 DOI: 10.1007/s12602-023-10128-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/20/2023] [Indexed: 07/31/2023]
24
Ahmed I, Zhuang Z, Umar Farooq M, Li H, Wang S, Zhong Y, Zhang L, Zhang B. Efficient reduction of antibiotic resistance genes and mobile genetic elements in organic waste composting via fenton-like treatment. BIORESOURCE TECHNOLOGY 2024;410:131306. [PMID: 39155020 DOI: 10.1016/j.biortech.2024.131306] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Revised: 08/05/2024] [Accepted: 08/15/2024] [Indexed: 08/20/2024]
25
Rao Y, Wang Y, Zhang H, Wang Y, He Q, Yuan X, Guo J, Chen H. A Strategy of Killing Two Birds With One Stone for Blocking Drug Resistance Spread With Engineered Bdellovibrio bacteriovorus. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024;36:e2406910. [PMID: 39139006 DOI: 10.1002/adma.202406910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 07/18/2024] [Indexed: 08/15/2024]
26
Du Y, Qian C, Li X, Zheng X, Huang S, Yin Z, Chen T, Pan L. Unveiling intraspecific diversity and evolutionary dynamics of the foodborne pathogen Bacillus paranthracis through high-quality pan-genome analysis. Curr Res Food Sci 2024;9:100867. [PMID: 39376581 PMCID: PMC11456886 DOI: 10.1016/j.crfs.2024.100867] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2024] [Revised: 09/20/2024] [Accepted: 09/20/2024] [Indexed: 10/09/2024]  Open
27
Oliveira M, Antunes W, Mota S, Madureira-Carvalho Á, Dinis-Oliveira RJ, Dias da Silva D. An Overview of the Recent Advances in Antimicrobial Resistance. Microorganisms 2024;12:1920. [PMID: 39338594 PMCID: PMC11434382 DOI: 10.3390/microorganisms12091920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 09/15/2024] [Accepted: 09/18/2024] [Indexed: 09/30/2024]  Open
28
Yang XY, Shen Z, Wang C, Nakanishi K, Fu TM. DdmDE eliminates plasmid invasion by DNA-guided DNA targeting. Cell 2024;187:5253-5266.e16. [PMID: 39173632 DOI: 10.1016/j.cell.2024.07.028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 05/09/2024] [Accepted: 07/17/2024] [Indexed: 08/24/2024]
29
Li X, Cai S, Xu M. Nanoscale zero-valent iron alleviated horizontal transfer of antibiotic resistance genes in soil: The important role of extracellular polymeric substances. JOURNAL OF HAZARDOUS MATERIALS 2024;480:135902. [PMID: 39303615 DOI: 10.1016/j.jhazmat.2024.135902] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 08/23/2024] [Accepted: 09/17/2024] [Indexed: 09/22/2024]
30
Wang Y, Chen P, Lin Q, Zuo L, Li L. Endophytic bacteria with allelopathic potential regulate gene expression and metabolite production in host Casuarina equisetifolia. FRONTIERS IN PLANT SCIENCE 2024;15:1435440. [PMID: 39359630 PMCID: PMC11445032 DOI: 10.3389/fpls.2024.1435440] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/20/2024] [Accepted: 08/23/2024] [Indexed: 10/04/2024]
31
Kopejtka K, Tomasch J, Shivaramu S, Saini MK, Kaftan D, Koblížek M. Minimal transcriptional regulation of horizontally transferred photosynthesis genes in phototrophic bacterium Gemmatimonas phototrophica. mSystems 2024;9:e0070624. [PMID: 39189770 PMCID: PMC11406998 DOI: 10.1128/msystems.00706-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 08/01/2024] [Indexed: 08/28/2024]  Open
32
Yang X, Gan Y, Zhang Y, Liu Z, Geng J, Wang W. Microbial genotoxin-elicited host DNA mutations related to mitochondrial dysfunction, a momentous contributor for colorectal carcinogenesis. mSystems 2024;9:e0088724. [PMID: 39189772 PMCID: PMC11406885 DOI: 10.1128/msystems.00887-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]  Open
33
Qi L, Wang W, Fang L, Li J, Qi L, Wang D, Liu J, Xiao Y, Zhou W, Fang X. DNA Molecular Glue Assisted Bacterial Conjugative Transfer. Chemistry 2024;30:e202401399. [PMID: 38867468 DOI: 10.1002/chem.202401399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 06/11/2024] [Accepted: 06/12/2024] [Indexed: 06/14/2024]
34
Schadron T, van den Beld M, Mughini-Gras L, Franz E. Use of whole genome sequencing for surveillance and control of foodborne diseases: status quo and quo vadis. Front Microbiol 2024;15:1460335. [PMID: 39345263 PMCID: PMC11427404 DOI: 10.3389/fmicb.2024.1460335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2024] [Accepted: 08/27/2024] [Indexed: 10/01/2024]  Open
35
Xie O, Davies MR, Tong SYC. Streptococcus dysgalactiae subsp. equisimilis infection and its intersection with Streptococcus pyogenes. Clin Microbiol Rev 2024;37:e0017523. [PMID: 38856686 PMCID: PMC11392527 DOI: 10.1128/cmr.00175-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2024]  Open
36
Crepin DM, Chavignon M, Verhoeven PO, Laurent F, Josse J, Butin M. Staphylococcus capitis: insights into epidemiology, virulence, and antimicrobial resistance of a clinically relevant bacterial species. Clin Microbiol Rev 2024;37:e0011823. [PMID: 38899876 PMCID: PMC11391707 DOI: 10.1128/cmr.00118-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/21/2024]  Open
37
Bjornson S, Verbruggen H, Upham NS, Steenwyk JL. Reticulate evolution: Detection and utility in the phylogenomics era. Mol Phylogenet Evol 2024;201:108197. [PMID: 39270765 DOI: 10.1016/j.ympev.2024.108197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2024] [Revised: 08/13/2024] [Accepted: 09/08/2024] [Indexed: 09/15/2024]
38
Maurice K, Laurent-Webb L, Bourceret A, Boivin S, Boukcim H, Selosse MA, Ducousso M. Networking the desert plant microbiome, bacterial and fungal symbionts structure and assortativity in co-occurrence networks. ENVIRONMENTAL MICROBIOME 2024;19:65. [PMID: 39223675 PMCID: PMC11370318 DOI: 10.1186/s40793-024-00610-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 08/28/2024] [Indexed: 09/04/2024]
39
Beeloo R, Zomer A, Deorowicz S, Dutilh B. Graphite: painting genomes using a colored de Bruijn graph. NAR Genom Bioinform 2024;6:lqae142. [PMID: 39445080 PMCID: PMC11497850 DOI: 10.1093/nargab/lqae142] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 08/02/2024] [Accepted: 10/05/2024] [Indexed: 10/25/2024]  Open
40
Wang Y, Li X, Li A, Chen C, Fang J, Luo N, Tian S, Chen L, Wu X, Song X, Tan J, Zhang Y, Zhu Q, Li Y, Xiong Y, Pei H, Xia Q. The genetic diversity and evolution analysis of the Hainan melioidosis outbreak strains. INFECTION, GENETICS AND EVOLUTION : JOURNAL OF MOLECULAR EPIDEMIOLOGY AND EVOLUTIONARY GENETICS IN INFECTIOUS DISEASES 2024;123:105654. [PMID: 39111344 DOI: 10.1016/j.meegid.2024.105654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2024] [Revised: 08/02/2024] [Accepted: 08/02/2024] [Indexed: 08/10/2024]
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Huang D, Xia R, Chen C, Liao J, Chen L, Wang D, Alvarez PJJ, Yu P. Adaptive strategies and ecological roles of phages in habitats under physicochemical stress. Trends Microbiol 2024;32:902-916. [PMID: 38433027 DOI: 10.1016/j.tim.2024.02.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 02/01/2024] [Accepted: 02/02/2024] [Indexed: 03/05/2024]
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Chen X, Wang M, Luo L, Liu X, An L, Nie Y, Wu XL. The evolution of autonomy from two cooperative specialists in fluctuating environments. Proc Natl Acad Sci U S A 2024;121:e2317182121. [PMID: 39172793 PMCID: PMC11363282 DOI: 10.1073/pnas.2317182121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2023] [Accepted: 07/24/2024] [Indexed: 08/24/2024]  Open
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Gal J, Johnson SM. An Exopolysaccharide from the Cyanobacterium Arthrospira platensis May Utilize CH-π Bonding: A Review of the Isolation, Purification, and Chemical Structure of Calcium-Spirulan. ACS OMEGA 2024;9:35243-35255. [PMID: 39184464 PMCID: PMC11339812 DOI: 10.1021/acsomega.4c05066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/29/2024] [Revised: 07/30/2024] [Accepted: 08/01/2024] [Indexed: 08/27/2024]
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Peñil-Celis A, Tagg KA, Webb HE, Redondo-Salvo S, Francois Watkins L, Vielva L, Griffin C, Kim JY, Folster JP, Garcillan-Barcia MP, de la Cruz F. Mobile genetic elements define the non-random structure of the Salmonella enterica serovar Typhi pangenome. mSystems 2024;9:e0036524. [PMID: 39058093 PMCID: PMC11334464 DOI: 10.1128/msystems.00365-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 06/30/2024] [Indexed: 07/28/2024]  Open
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Sivalingam P, Sabatino R, Sbaffi T, Corno G, Fontaneto D, Borgomaneiro G, Rogora M, Crotti E, Mapelli F, Borin S, Pilar AL, Eckert EM, Di Cesare A. Anthropogenic pollution may enhance natural transformation in water, favouring the spread of antibiotic resistance genes. JOURNAL OF HAZARDOUS MATERIALS 2024;475:134885. [PMID: 38876022 DOI: 10.1016/j.jhazmat.2024.134885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 04/19/2024] [Accepted: 06/10/2024] [Indexed: 06/16/2024]
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Zhou Z, Shuai D. Disinfection and post-disinfection conditions drive bacterial and viral evolution across the environment and host. JOURNAL OF HAZARDOUS MATERIALS 2024;474:134811. [PMID: 38850949 DOI: 10.1016/j.jhazmat.2024.134811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 05/31/2024] [Accepted: 06/03/2024] [Indexed: 06/10/2024]
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Rappaport HB, Oliverio AM. Lessons from Extremophiles: Functional Adaptations and Genomic Innovations across the Eukaryotic Tree of Life. Genome Biol Evol 2024;16:evae160. [PMID: 39101574 PMCID: PMC11299111 DOI: 10.1093/gbe/evae160] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/15/2024] [Indexed: 08/06/2024]  Open
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Zhang P, Wang Y, Lin H, Liang J, Wang J, Bai Y, Qu J, Wang A. Bacterial evolution in Biofiltration of drinking water treatment plant: Different response of phage and plasmid to varied water sources. WATER RESEARCH 2024;259:121887. [PMID: 38870889 DOI: 10.1016/j.watres.2024.121887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 05/24/2024] [Accepted: 06/03/2024] [Indexed: 06/15/2024]
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Andrews KR, Besser TE, Stalder T, Top EM, Baker KN, Fagnan MW, New DD, Schneider GM, Gal A, Andrews-Dickert R, Hunter SS, Beckmen KB, Christensen L, Justice-Allen A, Konetchy D, Lehman CP, Manlove K, Miyasaki H, Nordeen T, Roug A, Cassirer EF. Comparative genomic analysis identifies potential adaptive variation in Mycoplasma ovipneumoniae. Microb Genom 2024;10:001279. [PMID: 39213169 PMCID: PMC11364169 DOI: 10.1099/mgen.0.001279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 07/16/2024] [Indexed: 09/04/2024]  Open
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Guo J, Qiu X, Xie YG, Hua ZS, Wang Y. Regulation of intracellular process by two-component systems: Exploring the mechanism of plasmid-mediated conjugative transfer. WATER RESEARCH 2024;259:121855. [PMID: 38838482 DOI: 10.1016/j.watres.2024.121855] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 05/26/2024] [Accepted: 05/29/2024] [Indexed: 06/07/2024]
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