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Nagy J, Hauber ME, Löki V, Mainwaring MC. Plumage and eggshell colouration covary with the level of sex-specific parental contributions to nest building in birds. THE SCIENCE OF NATURE - NATURWISSENSCHAFTEN 2024; 111:12. [PMID: 38411714 PMCID: PMC10899274 DOI: 10.1007/s00114-024-01899-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/01/2023] [Revised: 12/19/2023] [Accepted: 02/19/2024] [Indexed: 02/28/2024]
Abstract
Interspecific variation in sex-specific contributions to prenatal parental care, including avian nest building, is becoming increasingly better understood as we amass more information on more species. We examined whether sex-specific nest building contributions covary with the colouration of parents and their eggs in 521 species of Western Palearctic birds. Having colourful plumage and laying colourful eggs are costly because of the deposition of pigments in feathers and eggs and/or forming costly nanostructural substrates in feathers, and so it might be expected that those costs covary with the costs of nest building at the level of individuals and/or across species to produce of a suite of codivergent traits. Using a phylogenetically informed approach, we tested the hypothesis that species in which females alone invest energy building nests exhibit less sexual plumage dichromatism. However, we found comparative support for the opposite of this prediction. We then tested that species in which females alone build nests lay more colourful, and costlier, eggs because the dual costs of building nests and laying colourful eggs can only be borne by higher quality individuals. As expected, we found that species in which females build nests alone or together with males are more likely to lay colourfully pigmented eggs relative to species in which only males build nests. Finally, stochastic character mapping provided evidence of the repeated evolution of female-only nest building. Interspecific sex differences in plumage colouration therefore covary in a complex manner with female pre- (nest building) and post-copulatory (egg production) investment in reproduction.
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Affiliation(s)
- Jenő Nagy
- HUN-REN-UD Conservation Biology Research Group, Department of Botany, University of Debrecen, Egyetem tér 1., H-4032, Debrecen, Hungary
| | - Mark E Hauber
- Advanced Science Research Center and Program in Psychology, Graduate Center of the City University of New York, New York, NY, 10031, USA
| | - Viktor Löki
- Wetland Ecology Research Group, HUN-REN Centre for Ecological Research, Institute of Aquatic Ecology, Bem tér 18/C, H-4026, Debrecen, Hungary
| | - Mark C Mainwaring
- School of Environmental and Natural Sciences, Bangor University, Bangor, LL57 2DG, UK.
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2
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Nagy J, Fulmer AG, Löki V, Ruiz-Raya F, Hauber ME. Biogeographic history, egg colouration, and habitat selection in Turdus thrushes (Aves: Turdidae). Biol Futur 2023; 74:467-474. [PMID: 37919466 DOI: 10.1007/s42977-023-00191-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 10/17/2023] [Indexed: 11/04/2023]
Abstract
Despite broad interest and recent experimentation, there is no single ecological model accounting for the adaptive significance of the diversity of avian eggshell colouration. The often blue-green eggs of Turdus thrushes are a charismatic example of this, having long captured cultural and scientific attention. Although the biology and evolutionary history of "true" thrushes is well understood, little is known about correlated evolution between shifts in habitat and eggshell pigmentation, and how these shifts map with Turdus biogeography. We applied phylogenetic comparative methods to assess the evolutionary timing of divergence and variation of life history traits and eggshell colouration and maculation presence in the genus. We found that eggshell colour diversified independently on several occasions in the past 11 million years, with much of the variation occurring within the last 4 million years. The majority of Turdus species lay blue-green eggs and also tend to be sedentary and forest-dwelling. Diet generalist species and species which have transitioned to a forest habitat are more likely to lay white eggs (10% of studied species). In turn, lineages in any habitat were more likely to transition to blue-green eggs. We found that variation in egg colour is increased in some clades, of which two lineages radiated in South America and the East Palearctic, in the past 2-4 million years. These findings provide support for the hypothesis that white eggs are more conspicuous to predators in open environments and that multiple, non-mutually exclusive constraints operate on the adaptive function of avian eggshell colour.
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Affiliation(s)
- Jenő Nagy
- HUN-REN-UD Conservation Biology Research Group, Department of Botany, University of Debrecen, Egyetem tér 1., Debrecen, 4032, Hungary.
| | - Andrew G Fulmer
- Department of Psychology, Fort Lewis College, 1000 Rim Dr, Durango, CO, 81301, USA
| | - Viktor Löki
- Wetland Ecology Research Group, HUN-REN Centre for Ecological Research, IAE, Bem tér 18/C, Debrecen, 4026, Hungary
| | - Francisco Ruiz-Raya
- Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, EH9 3FL, Edinburgh, UK
| | - Mark E Hauber
- Advanced Science Research Center and Program in Psychology, Graduate Center of the City University of New York, 85 St. Nicholas Terrace, New York, NY, 10031, USA
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Dhami NK, Greenwood PF, Poropat SF, Tripp M, Elson A, Vijay H, Brosnan L, Holman AI, Campbell M, Hopper P, Smith L, Jian A, Grice K. Microbially mediated fossil concretions and their characterization by the latest methodologies: a review. Front Microbiol 2023; 14:1225411. [PMID: 37840715 PMCID: PMC10576451 DOI: 10.3389/fmicb.2023.1225411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 08/14/2023] [Indexed: 10/17/2023] Open
Abstract
The study of well-preserved organic matter (OM) within mineral concretions has provided key insights into depositional and environmental conditions in deep time. Concretions of varied compositions, including carbonate, phosphate, and iron-based minerals, have been found to host exceptionally preserved fossils. Organic geochemical characterization of concretion-encapsulated OM promises valuable new information of fossil preservation, paleoenvironments, and even direct taxonomic information to further illuminate the evolutionary dynamics of our planet and its biota. Full exploitation of this largely untapped geochemical archive, however, requires a sophisticated understanding of the prevalence, formation controls and OM sequestration properties of mineral concretions. Past research has led to the proposal of different models of concretion formation and OM preservation. Nevertheless, the formation mechanisms and controls on OM preservation in concretions remain poorly understood. Here we provide a detailed review of the main types of concretions and formation pathways with a focus on the role of microbes and their metabolic activities. In addition, we provide a comprehensive account of organic geochemical, and complimentary inorganic geochemical, morphological, microbial and paleontological, analytical methods, including recent advancements, relevant to the characterization of concretions and sequestered OM. The application and outcome of several early organic geochemical studies of concretion-impregnated OM are included to demonstrate how this underexploited geo-biological record can provide new insights into the Earth's evolutionary record. This paper also attempts to shed light on the current status of this research and major challenges that lie ahead in the further application of geo-paleo-microbial and organic geochemical research of concretions and their host fossils. Recent efforts to bridge the knowledge and communication gaps in this multidisciplinary research area are also discussed, with particular emphasis on research with significance for interpreting the molecular record in extraordinarily preserved fossils.
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Affiliation(s)
- Navdeep K. Dhami
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Paul F. Greenwood
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Stephen F. Poropat
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Madison Tripp
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Amy Elson
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Hridya Vijay
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Luke Brosnan
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Alex I. Holman
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Matthew Campbell
- The Trace and Environmental DNA lab (trEND), School of Molecular and Life Sciences, Curtin University, Perth, WA, Australia
| | - Peter Hopper
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Lisa Smith
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Andrew Jian
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Kliti Grice
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
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Mainwaring MC, Medina I, Tobalske BW, Hartley IR, Varricchio DJ, Hauber ME. The evolution of nest site use and nest architecture in modern birds and their ancestors. Philos Trans R Soc Lond B Biol Sci 2023; 378:20220143. [PMID: 37427466 PMCID: PMC10331912 DOI: 10.1098/rstb.2022.0143] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Accepted: 05/19/2023] [Indexed: 07/11/2023] Open
Abstract
The evolution of nest site use and nest architecture in the non-avian ancestors of birds remains poorly understood because nest structures do not preserve well as fossils. Nevertheless, the evidence suggests that the earliest dinosaurs probably buried eggs below ground and covered them with soil so that heat from the substrate fuelled embryo development, while some later dinosaurs laid partially exposed clutches where adults incubated them and protected them from predators and parasites. The nests of euornithine birds-the precursors to modern birds-were probably partially open and the neornithine birds-or modern birds-were probably the first to build fully exposed nests. The shift towards smaller, open cup nests has been accompanied by shifts in reproductive traits, with female birds having one functioning ovary in contrast to the two ovaries of crocodilians and many non-avian dinosaurs. The evolutionary trend among extant birds and their ancestors has been toward the evolution of greater cognitive abilities to construct in a wider diversity of sites and providing more care for significantly fewer, increasingly altricial, offspring. The highly derived passerines reflect this pattern with many species building small, architecturally complex nests in open sites and investing significant care into altricial young. This article is part of the theme issue 'The evolutionary ecology of nests: a cross-taxon approach'.
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Affiliation(s)
| | - Iliana Medina
- School of BioSciences, University of Melbourne, Melbourne VIC 3010, Australia
| | - Bret W. Tobalske
- Field Research Station at Fort Missoula, Division of Biological Sciences, University of Montana, MT 59802, USA
| | - Ian R. Hartley
- Lancaster Environment Centre, Lancaster University, Lancaster LA1 4YQ, UK
| | - David J. Varricchio
- Department of Earth Sciences, Montana State University, Bozeman, MT 59717, USA
| | - Mark E. Hauber
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
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Attard MRG, Bowen J, Portugal SJ. Surface texture heterogeneity in maculated bird eggshells. J R Soc Interface 2023; 20:20230293. [PMID: 37434502 PMCID: PMC10336372 DOI: 10.1098/rsif.2023.0293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Accepted: 06/21/2023] [Indexed: 07/13/2023] Open
Abstract
Many of the world's 10 000 bird species lay coloured or patterned eggs. The large diversity of eggshell patterning among birds, achieved through pigment, has been attributed to a few selective agents such as crypsis, thermoregulation, egg recognition, mate signalling, egg strength and protecting the embryo from UV. Pigmentation may influence the texture of eggshells, which in turn may be important for dealing with water and microbes. We measured surface roughness (Sa, nm), surface skewness (Ssk) and surface kurtosis (Sku), which describe different aspects of surface texture, across 204 bird species with maculated (patterned) eggs and 166 species with immaculate (non-patterned) eggs. Using phylogenetically controlled analyses, we tested whether maculated eggshells have different surface topography between the foreground colour and background colour, and between the background colour of maculated eggshells and the surface of immaculate eggshells. Secondly, we determined to what extent variation in eggshell pigmentation of the foreground and background colour is determined by phylogenetic relatedness, and whether certain life-history traits are important predictors of eggshell surface structure. We show that the surface of maculated eggs consists of a rougher foreground pigment compared to the background pigment across 71% of the 204 bird species (54 families) investigated. Species that lay immaculate eggs showed no difference in surface roughness, kurtosis or skewness compared to background pigment of maculated eggs. The difference in eggshell surface roughness between foreground and background pigmentation was greater among species that occupied dense habitats, such as forests with closed canopies, compared to those that nest in open and semi-open habitats (e.g. cities, deserts, grasslands, open shrubland and seashores). Among maculated eggs, foreground texture was correlated with habitat, parental care, diet, nest location, avian group and nest type, while background texture was correlated with clutch size, annual temperature, development mode and annual precipitation. Surface roughness among immaculate eggs was greatest for herbivores, and species that have larger clutch sizes. Together, this suggests that multiple life-history traits have influenced the evolution of eggshell surface textures in modern birds.
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Affiliation(s)
- Marie R. G. Attard
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham TW20 0EX, UK
- School of Engineering & Innovation, Open University, Milton Keynes MK7 6AA, UK
- Mapping and Geographic Information Centre, British Antarctic Survey, Cambridge CB3 0ET, UK
| | - James Bowen
- School of Engineering & Innovation, Open University, Milton Keynes MK7 6AA, UK
| | - Steven J. Portugal
- Department of Biological Sciences, School of Life and Environmental Sciences, Royal Holloway University of London, Egham TW20 0EX, UK
- The Natural History Museum, Tring HP23 6AP, UK
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Tagliavento M, Davies AJ, Bernecker M, Staudigel PT, Dawson RR, Dietzel M, Götschl K, Guo W, Schulp AS, Therrien F, Zelenitsky DK, Gerdes A, Müller W, Fiebig J. Evidence for heterothermic endothermy and reptile-like eggshell mineralization in Troodon, a non-avian maniraptoran theropod. Proc Natl Acad Sci U S A 2023; 120:e2213987120. [PMID: 37011196 PMCID: PMC10104568 DOI: 10.1073/pnas.2213987120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 02/15/2023] [Indexed: 04/05/2023] Open
Abstract
The dinosaur-bird transition involved several anatomical, biomechanical, and physiological modifications of the theropod bauplan. Non-avian maniraptoran theropods, such as Troodon, are key to better understand changes in thermophysiology and reproduction occurring during this transition. Here, we applied dual clumped isotope (Δ47 and Δ48) thermometry, a technique that resolves mineralization temperature and other nonthermal information recorded in carbonates, to eggshells from Troodon, modern reptiles, and modern birds. Troodon eggshells show variable temperatures, namely 42 and 29 ± 2 °C, supporting the hypothesis of an endothermic thermophysiology with a heterothermic strategy for this extinct taxon. Dual clumped isotope data also reveal physiological differences in the reproductive systems between Troodon, reptiles, and birds. Troodon and modern reptiles mineralize their eggshells indistinguishable from dual clumped isotope equilibrium, while birds precipitate eggshells characterized by a positive disequilibrium offset in Δ48. Analyses of inorganic calcites suggest that the observed disequilibrium pattern in birds is linked to an amorphous calcium carbonate (ACC) precursor, a carbonate phase known to accelerate eggshell formation in birds. Lack of disequilibrium patterns in reptile and Troodon eggshells implies these vertebrates had not acquired the fast, ACC-based eggshell calcification process characteristic of birds. Observation that Troodon retained a slow reptile-like calcification suggests that it possessed two functional ovaries and was limited in the number of eggs it could produce; thus its large clutches would have been laid by several females. Dual clumped isotope analysis of eggshells of extinct vertebrates sheds light on physiological information otherwise inaccessible in the fossil record.
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Affiliation(s)
- Mattia Tagliavento
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
| | - Amelia J. Davies
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
| | - Miguel Bernecker
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
| | - Philip T. Staudigel
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
| | - Robin R. Dawson
- Department of Earth, Geographic and Climate Sciences, University of Massachusetts, Amherst, MA01003
| | - Martin Dietzel
- Institute of Applied Geosciences, Graz University of Technology,8010Graz, Austria
| | - Katja Götschl
- Institute of Applied Geosciences, Graz University of Technology,8010Graz, Austria
| | - Weifu Guo
- Department of Geology and Geophysics, Woods Hole Oceanographic Institution, Woods Hole, MA02543
| | - Anne S. Schulp
- Vertebrate Evolution and Development, Naturalis Biodiversity Center,2333CRLeiden, the Netherlands
- Department of Earth Sciences, Faculty of Geosciences, Universiteit Utrecht,3584 CBUtrecht, the Netherlands
| | | | | | - Axel Gerdes
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
- Frankfurt Isotope and Element Research Center, Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
| | - Wolfgang Müller
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
- Frankfurt Isotope and Element Research Center, Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
| | - Jens Fiebig
- Institute of Geosciences, Goethe University Frankfurt, Frankfurt am Main60438, Germany
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Schmitz Ornés A, Ducay RL, Fulmer AG, Hauber ME. Coloniality and development impact intraclutch consistency of avian eggs: a comparative analysis of the individual repeatability of eggshell size and shape metrics. THE SCIENCE OF NATURE - NATURWISSENSCHAFTEN 2023; 110:12. [PMID: 36943536 DOI: 10.1007/s00114-023-01840-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 02/19/2023] [Accepted: 02/21/2023] [Indexed: 03/23/2023]
Abstract
In oviparous animals, egg morphology is considered an aspect of the extended phenotype of the laying mother and, thus, can be directly assessed for consistency both within and between individual females. Despite a recently renewed interest in the evolution and mechanics of avian eggshell morphology, we still lack a large-scale, comparative understanding of which egg traits are individually plastic and whether individual consistency is shaped by ecological and life history traits at the species level. Here, we aimed to understand whether intraclutch repeatability per se of different eggshell metrics is an evolving trait that responds to selection pressures from socio-ecological contexts across a diverse group of avian species for which clutch-level eggshell morphology data were available to us. Coloniality, ontogeny, and incubation period had significant impacts on the comparative patterns of relative individual repeatability among two egg metrics (i.e., size and shape), whereas other life history traits (including adult size, clutch size, nest type, migration, breeding latitude, host status of brood parasitism) did not have statistical impacts. Our results also demonstrate that individual consistency has a more widespread phylogenetic distribution than expected by evolutionary contingency across avian diversity. Future analyses should also incorporate the effects of intra- and interspecific covariation in other morphological and physiological traits on the evolution of individual consistency, especially those relevant to egg recognition, including eggshell color and maculation.
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Affiliation(s)
- Angela Schmitz Ornés
- AG Vogelwarte, Zoological Institute and Museum, University of Greifswald, 17489, Greifswald, Germany
| | - Rebecca L Ducay
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA
- School of Forestry and Horticulture, Southern Illinois University, Carbondale, IL, 62901, USA
| | - Andrew G Fulmer
- Department of Psychology, Fort Lewis College, Durango, CO, 81301, USA
| | - Mark E Hauber
- Department of Evolution, Ecology, and Behavior, School of Integrative Biology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
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A new molecular mechanism supports that blue-greenish egg color evolved independently across chicken breeds. Poult Sci 2022; 101:102223. [PMID: 36283143 PMCID: PMC9597111 DOI: 10.1016/j.psj.2022.102223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2021] [Revised: 08/08/2022] [Accepted: 09/29/2022] [Indexed: 11/21/2022] Open
Abstract
Chicken blue-greenish coloration (BGC) was known as a classic Mendel trait caused by a retrovirus (EAV-HP) insertion in the SLCO1B3 gene. Lueyang black-boned chicken (LBC) BGC is light and varies continuously, implying that LBC BGC may be controlled by a new molecular mechanism. The aim of this study was to provide an insight into the molecular basis of LBC BGC. The EAV-HP was detected in the BGC (n = 105) and non-BGC LBC (n = 474) using a PCR-based method. The association of SLCO1B3 expression in shell glands and sequence variants in a 1.6-kb region upstream from the transcription start site of SLCO1B3 with eggshell color and biliverdin (pigment for BGC) concentration was studied. Promoter activities of haplotypes in the 1.6-kb region were analyzed by luciferase reporter assay. This study did not found the EAV-HP in BGC and Non-BGC LBC, but detected a strong positive correlation between levels of SLCO1B3 expression in shell glands and biliverdin concentrations. A total of 31 SNP were found in the 1.6-kb region. Twenty-two of 31 SNP formed 42 types of haplotypes in the re-sequenced samples (n = 94). Haplotype 4 was present in higher frequency in the BGC (52%) than Non-BGC (3%). Haplotype 13 was significantly associated with Non-BGC (Non-BGC vs. BGC = 26% vs. 6%). In line with the above associations, Haplotype 4 showed higher (P < 0.05) levels of SLCO1B3 expression in shell glands, biliverdin concentration, and promoter activity than Haplotype 13. This study confirms that LBC BGC is not caused by the EAV-HP, but remains to be associated with the change of SLCO1B3 expression. Haplotype 4 accounts to some extents for the molecular basis of LBC BGC. The new molecular mechanism supports LBC BGC independently evolved.
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Stoddard MC. Bird eggs. Curr Biol 2022; 32:R1126-R1132. [DOI: 10.1016/j.cub.2022.07.052] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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10
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Jurašeková Z, Fabriciová G, Silveira LF, Lee YN, Gutak JM, Ataabadi MM, Kundrát M. Raman Spectra and Ancient Life: Vibrational ID Profiles of Fossilized (Bone) Tissues. Int J Mol Sci 2022; 23:10689. [PMID: 36142598 PMCID: PMC9502200 DOI: 10.3390/ijms231810689] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 09/11/2022] [Accepted: 09/12/2022] [Indexed: 11/17/2022] Open
Abstract
Raman micro-spectroscopy is a non-destructive and non-contact analytical technique that combines microscopy and spectroscopy, thus providing a potential for non-invasive and in situ molecular identification, even over heterogeneous and rare samples such as fossilized tissues. Recently, chemical imaging techniques have become an increasingly popular tool for characterizing trace elements, isotopic information, and organic markers in fossils. Raman spectroscopy also shows a growing potential in understanding bone microstructure, chemical composition, and mineral assemblance affected by diagenetic processes. In our lab, we have investigated a wide range of different fossil tissues, mainly of Mesozoic vertebrates (from Jurassic through Cretaceous). Besides standard spectra of sedimentary rocks, including pigment contamination, our Raman spectra also exhibit interesting spectral features in the 1200-1800 cm-1 spectral range, where Raman bands of proteins, nucleic acids, and other organic molecules can be identified. In the present study, we discuss both a possible origin of the observed bands of ancient organic residues and difficulties with definition of the specific spectral markers in fossilized soft and hard tissues.
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Affiliation(s)
- Zuzana Jurašeková
- Department of Biophysics, Faculty of Science, Pavol Jozef Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Gabriela Fabriciová
- Department of Biophysics, Faculty of Science, Pavol Jozef Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
| | - Luis F. Silveira
- Museu de Zoologia da Universidade de São Paulo, Caixa Postal 42.494, São Paulo 04218-970, Brazil
| | - Yuong-Nam Lee
- School of Earth and Environmental Sciences, Seoul National University, Seoul 08826, Korea
| | - Jaroslav M. Gutak
- Department of Geology, Geodesy, and Life Security, Institute of Mining and Geosystems, Siberian State Industrial University, Kirov Street 42, 654007 Novokuznetsk, Russia
| | - Majid Mirzaie Ataabadi
- Department of Geology, Faculty of Science, University of Zanjan, Zanjan 4537138791, Iran
| | - Martin Kundrát
- PaleoBioImaging Lab, Evolutionary Biodiversity Research Group, Center for Interdisciplinary Biosciences, Technology and Innovation Park, Pavol Jozef Šafárik University in Košice, Jesenná 5, 04154 Košice, Slovakia
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11
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Siljeström S, Neubeck A, Steele A. Detection of porphyrins in vertebrate fossils from the Messel and implications for organic preservation in the fossil record. PLoS One 2022; 17:e0269568. [PMID: 35767560 PMCID: PMC9242450 DOI: 10.1371/journal.pone.0269568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 05/24/2022] [Indexed: 11/30/2022] Open
Abstract
Organic molecules preserved in fossils provide a wealth of new information about ancient life. The discovery of almost unaltered complex organic molecules in well-preserved fossils raise the question of how common such occurrences are in the fossil record, how to differentiate between endogenous and exogenous sources for the organic matter and what promotes such preservation. The aim of this study was the in-situ analysis of a well-preserved vertebrate fossil from 48 Ma Eocene sediments in the Messel pit, Germany for preservation of complex biomolecules. The fossil was characterized using a variety of techniques including time-of-flight secondary ion mass spectrometry (ToF-SIMS), scanning electron microscopy/energy dispersive x-ray spectroscopy (SEM/EDX), x-ray diffraction (XRD) and Raman spectroscopy. A suite of organic molecules was detected, including porphyrins, which given the context of the detected signal are most probably diagenetically altered heme originating from the fossil though a microbial contribution cannot be completely ruled out. Diagenetic changes to the porphyrin structure were observed that included the exchange of the central iron by nickel. Further analyses on the geochemistry of the fossil and surrounding sediments showed presence of pyrite and aluminosilicates, most likely clay. In addition, a carbonate and calcium phosphate dominated crust has formed around the fossil. This suggests that several different processes are involved in the preservation of the fossil and the organic molecules associated with it. Similar processes seem to have also been involved in preservation of heme in fossils from other localities.
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Affiliation(s)
- Sandra Siljeström
- Department of Methodology, Textiles and Medical Technology, RISE Research Institutes of Sweden, Stockholm, Sweden
- * E-mail:
| | - Anna Neubeck
- Department of Earth Sciences, Uppsala University, Uppsala, Sweden
| | - Andrew Steele
- Carnegie Institution for Science, Earth and Planetary Laboratory, Washington, DC, United States of America
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12
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Wiemann J, Menéndez I, Crawford JM, Fabbri M, Gauthier JA, Hull PM, Norell MA, Briggs DEG. Fossil biomolecules reveal an avian metabolism in the ancestral dinosaur. Nature 2022; 606:522-526. [PMID: 35614213 DOI: 10.1038/s41586-022-04770-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 04/19/2022] [Indexed: 11/09/2022]
Abstract
Birds and mammals independently evolved the highest metabolic rates among living animals1. Their metabolism generates heat that enables active thermoregulation1, shaping the ecological niches they can occupy and their adaptability to environmental change2. The metabolic performance of birds, which exceeds that of mammals, is thought to have evolved along their stem lineage3-10. However, there is no proxy that enables the direct reconstruction of metabolic rates from fossils. Here we use in situ Raman and Fourier-transform infrared spectroscopy to quantify the in vivo accumulation of metabolic lipoxidation signals in modern and fossil amniote bones. We observe no correlation between atmospheric oxygen concentrations11 and metabolic rates. Inferred ancestral states reveal that the metabolic rates consistent with endothermy evolved independently in mammals and plesiosaurs, and are ancestral to ornithodirans, with increasing rates along the avian lineage. High metabolic rates were acquired in pterosaurs, ornithischians, sauropods and theropods well before the advent of energetically costly adaptations, such as flight in birds. Although they had higher metabolic rates ancestrally, ornithischians reduced their metabolic abilities towards ectothermy. The physiological activities of such ectotherms were dependent on environmental and behavioural thermoregulation12, in contrast to the active lifestyles of endotherms1. Giant sauropods and theropods were not gigantothermic9,10, but true endotherms. Endothermy in many Late Cretaceous taxa, in addition to crown mammals and birds, suggests that attributes other than metabolism determined their fate during the terminal Cretaceous mass extinction.
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Affiliation(s)
- Jasmina Wiemann
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA.
- Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA.
- Dinosaur Institute, Natural History Museum of Los Angeles County, Los Angeles, CA, USA.
| | - Iris Menéndez
- Departamento de Geodinámica, Estratigrafía y Paleontología, Facultad de Ciencias Geológicas, Universidad Complutense de Madrid, Madrid, Spain
- Departamento de Cambio Medioambiental, Instituto de Geociencias (UCM, CSIC), Madrid, Spain
| | | | - Matteo Fabbri
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
| | - Jacques A Gauthier
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Pincelli M Hull
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
| | - Mark A Norell
- Division of Paleontology, American Museum of Natural History, New York, NY, USA
| | - Derek E G Briggs
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT, USA
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13
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Tahoun M, Engeser M, Namasivayam V, Sander PM, Müller CE. Chemistry and Analysis of Organic Compounds in Dinosaurs. BIOLOGY 2022; 11:670. [PMID: 35625398 PMCID: PMC9138232 DOI: 10.3390/biology11050670] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 04/12/2022] [Accepted: 04/22/2022] [Indexed: 11/17/2022]
Abstract
This review provides an overview of organic compounds detected in non-avian dinosaur fossils to date. This was enabled by the development of sensitive analytical techniques. Non-destructive methods and procedures restricted to the sample surface, e.g., light and electron microscopy, infrared (IR) and Raman spectroscopy, as well as more invasive approaches including liquid chromatography coupled to tandem mass spectrometry (LC-MS/MS), time-of-flight secondary ion mass spectrometry, and immunological methods were employed. Organic compounds detected in samples of dinosaur fossils include pigments (heme, biliverdin, protoporphyrin IX, melanin), and proteins, such as collagens and keratins. The origin and nature of the observed protein signals is, however, in some cases, controversially discussed. Molecular taphonomy approaches can support the development of suitable analytical methods to confirm reported findings and to identify further organic compounds in dinosaur and other fossils in the future. The chemical properties of the various organic compounds detected in dinosaurs, and the techniques utilized for the identification and analysis of each of the compounds will be discussed.
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Affiliation(s)
- Mariam Tahoun
- PharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, D-53121 Bonn, Germany; (M.T.); (V.N.)
| | - Marianne Engeser
- Kekulé Institute for Organic Chemistry and Biochemistry, University of Bonn, D-53121 Bonn, Germany;
| | - Vigneshwaran Namasivayam
- PharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, D-53121 Bonn, Germany; (M.T.); (V.N.)
| | - Paul Martin Sander
- Institute of Geosciences, Section Paleontology, University of Bonn, D-53113 Bonn, Germany;
| | - Christa E. Müller
- PharmaCenter Bonn, Pharmaceutical Institute, Pharmaceutical & Medicinal Chemistry, University of Bonn, D-53121 Bonn, Germany; (M.T.); (V.N.)
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14
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Xing L, Niu K, Ma W, Zelenitsky DK, Yang TR, Brusatte SL. An exquisitely preserved in-ovo theropod dinosaur embryo sheds light on avian-like prehatching postures. iScience 2022; 25:103516. [PMID: 35106456 PMCID: PMC8786642 DOI: 10.1016/j.isci.2021.103516] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 11/14/2021] [Accepted: 11/22/2021] [Indexed: 11/20/2022] Open
Abstract
Despite the discovery of many dinosaur eggs and nests over the past 100 years, articulated in-ovo embryos are remarkably rare. Here we report an exceptionally preserved, articulated oviraptorid embryo inside an elongatoolithid egg, from the Late Cretaceous Hekou Formation of southern China. The head lies ventral to the body, with the feet on either side, and the back curled along the blunt pole of the egg, in a posture previously unrecognized in a non-avian dinosaur, but reminiscent of a late-stage modern bird embryo. Comparison to other late-stage oviraptorid embryos suggests that prehatch oviraptorids developed avian-like postures late in incubation, which in modern birds are related to coordinated embryonic movements associated with tucking - a behavior controlled by the central nervous system, critical for hatching success. We propose that such pre-hatching behavior, previously considered unique to birds, may have originated among non-avian theropods, which can be further investigated with additional discoveries of embryo fossils.
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Affiliation(s)
- Lida Xing
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing 100083, China
- School of the Earth Sciences and Resources, China University of Geosciences, Beijing 100083, China
- Yingliang Stone Nature History Museum, Nan'an 362300, China
| | - Kecheng Niu
- Yingliang Stone Nature History Museum, Nan'an 362300, China
| | - Waisum Ma
- School of Geography, Earth and Environmental Sciences, University of Birmingham, Birmingham, UK
| | | | - Tzu-Ruei Yang
- Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
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15
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Korneisel DE, Nesbitt SJ, Werning S, Xiao S. Putative fossil blood cells reinterpreted as diagenetic structures. PeerJ 2022; 9:e12651. [PMID: 35003935 PMCID: PMC8684720 DOI: 10.7717/peerj.12651] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 11/28/2021] [Indexed: 01/08/2023] Open
Abstract
Red to red-orange spheres in the vascular canals of fossil bone thin sections have been repeatedly reported using light microscopy. Some of these have been interpreted as the fossilized remains of blood cells or, alternatively, pyrite framboids. Here, we assess claims of blood cell preservation within bones of the therizinosauroid theropod Beipiaosaurus inexpectus from the Jehol Lagerstätte. Using Raman spectroscopy, Energy Dispersive X-ray Spectrometry, and Time of Flight Secondary Ion Mass Spectroscopy, we found evidence of high taphonomic alteration of the bone. We also found that the vascular canals in the bone, once purported to contain fossil red blood cell, are filled with a mix of clay minerals and carbonaceous compounds. The spheres could not be analyzed in isolation, but we did not find any evidence of pyrite or heme compounds in the vessels, surrounding bone, or matrix. However, we did observe similar spheres under light microscopy in petrified wood found in proximity to the dinosaur. Consequently, we conclude that the red spheres are most likely diagenetic structures replicated by the clay minerals present throughout the vascular canals.
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Affiliation(s)
- Dana E Korneisel
- Department of Geosciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - Sterling J Nesbitt
- Department of Geosciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
| | - Sarah Werning
- Department of Anatomy, Des Moines University, Des Moines, IA, United States of America
| | - Shuhai Xiao
- Department of Geosciences, Virginia Polytechnic Institute and State University (Virginia Tech), Blacksburg, VA, United States of America
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16
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Wiemann J, Briggs DEG. Raman spectroscopy is a powerful tool in molecular paleobiology: An analytical response to Alleon et al. (https://doi.org/10.1002/bies.202000295). Bioessays 2022; 44:e2100070. [PMID: 34993976 DOI: 10.1002/bies.202100070] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2021] [Revised: 12/03/2021] [Accepted: 12/07/2021] [Indexed: 01/08/2023]
Abstract
A recent article argued that signals from conventional Raman spectroscopy of organic materials are overwhelmed by edge filter and fluorescence artefacts. The article targeted a subset of Raman spectroscopic investigations of fossil and modern organisms and has implications for the utility of conventional Raman spectroscopy in comparative tissue analytics. The inferences were based on circular reasoning centered around the unconventional analysis of spectra from just two samples, one modern, and one fossil. We validated the disputed signals with in situ Fourier-Transform Infrared (FT-IR) Spectroscopy and through replication with different lasers, filters, and operators in independent laboratories. Our Raman system employs a holographic notch filter which is not affected by edge filter or other artefacts. Multiple lines of evidence confirm that conventional Raman spectra of fossils contain biologically and geologically meaningful information. Statistical analyses of large Raman and FT-IR spectral data sets reveal patterns in fossil composition and yield valuable insights into the history of life.
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Affiliation(s)
- Jasmina Wiemann
- Department of Earth and Planetary Sciences, Yale University, New Haven, Connecticut, USA.,Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA.,Dinosaur Institute, Natural History Museum of LA County, Los Angeles, California, USA
| | - Derek E G Briggs
- Department of Earth and Planetary Sciences, Yale University, New Haven, Connecticut, USA.,Yale Peabody Museum of Natural History, New Haven, Connecticut, USA
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17
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Abstract
The goal of paleoproteomics is to characterize proteins from specimens that have been subjected to the degrading and obscuring effects of time, thus obtaining biological information about tissues or organisms both unobservable in the present and unobtainable through morphological study. Although the description of sequences from Tyrannosaurus rex and Brachylophosaurus canadensis suggested that proteins may persist over tens of millions of years, the majority of paleoproteomic analyses have focused on historical, archeological, or relatively young paleontological samples that rarely exceed 1 million years in age. However, recent advances in methodology and analyses of diverse tissues types (e.g., fossil eggshell, dental enamel) have begun closing the large window of time that remains unexplored in the fossil history of the Cenozoic. In this perspective, we discuss the history and current state of deep time paleoproteomics (DTPp), here defined as paleoproteomic study of samples ∼1 million years (1 Ma) or more in age. We then discuss the future of DTPp research, including what we see as critical ways the field can expand, advancements in technology that can be utilized, and the types of questions DTPp can address if such a future is realized.
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Affiliation(s)
- Elena R Schroeter
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Timothy P Cleland
- Museum Conservation Institute, Smithsonian Institution, Suitland, Maryland 20746, United States
| | - Mary H Schweitzer
- Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina 27695, United States.,North Carolina Museum of Natural Sciences, Raleigh, North Carolina 27605, United States.,Department of Geology, Lund University, Lund SE-221 00, Sweden
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18
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Price-Waldman R, Stoddard MC. Avian Coloration Genetics: Recent Advances and Emerging Questions. J Hered 2021; 112:395-416. [PMID: 34002228 DOI: 10.1093/jhered/esab015] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2021] [Accepted: 03/22/2021] [Indexed: 11/13/2022] Open
Abstract
The colorful phenotypes of birds have long provided rich source material for evolutionary biologists. Avian plumage, beaks, skin, and eggs-which exhibit a stunning range of cryptic and conspicuous forms-inspired early work on adaptive coloration. More recently, avian color has fueled discoveries on the physiological, developmental, and-increasingly-genetic mechanisms responsible for phenotypic variation. The relative ease with which avian color traits can be quantified has made birds an attractive system for uncovering links between phenotype and genotype. Accordingly, the field of avian coloration genetics is burgeoning. In this review, we highlight recent advances and emerging questions associated with the genetic underpinnings of bird color. We start by describing breakthroughs related to 2 pigment classes: carotenoids that produce red, yellow, and orange in most birds and psittacofulvins that produce similar colors in parrots. We then discuss structural colors, which are produced by the interaction of light with nanoscale materials and greatly extend the plumage palette. Structural color genetics remain understudied-but this paradigm is changing. We next explore how colors that arise from interactions among pigmentary and structural mechanisms may be controlled by genes that are co-expressed or co-regulated. We also identify opportunities to investigate genes mediating within-feather micropatterning and the coloration of bare parts and eggs. We conclude by spotlighting 2 research areas-mechanistic links between color vision and color production, and speciation-that have been invigorated by genetic insights, a trend likely to continue as new genomic approaches are applied to non-model species.
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19
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Alleon J, Montagnac G, Reynard B, Brulé T, Thoury M, Gueriau P. Pushing Raman spectroscopy over the edge: purported signatures of organic molecules in fossil animals are instrumental artefacts. Bioessays 2021; 43:e2000295. [PMID: 33543495 DOI: 10.1002/bies.202000295] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2020] [Revised: 12/22/2020] [Accepted: 01/12/2021] [Indexed: 11/07/2022]
Abstract
Widespread preservation of fossilized biomolecules in many fossil animals has recently been reported in six studies, based on Raman microspectroscopy. Here, we show that the putative Raman signatures of organic compounds in these fossils are actually instrumental artefacts resulting from intense background luminescence. Raman spectroscopy is based on the detection of photons scattered inelastically by matter upon its interaction with a laser beam. For many natural materials, this interaction also generates a luminescence signal that is often orders of magnitude more intense than the light produced by Raman scattering. Such luminescence, coupled with the transmission properties of the spectrometer, induced quasi-periodic ripples in the measured spectra that have been incorrectly interpreted as Raman signatures of organic molecules. Although several analytical strategies have been developed to overcome this common issue, Raman microspectroscopy as used in the studies questioned here cannot be used to identify fossil biomolecules.
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Affiliation(s)
- Julien Alleon
- Institute of Earth Sciences, University of Lausanne, Géopolis, Lausanne, CH-1015, Switzerland
| | - Gilles Montagnac
- Université de Lyon, ENS de Lyon, Université Lyon 1, CNRS, LGL-TPE, Lyon, F-69007, France
| | - Bruno Reynard
- Université de Lyon, ENS de Lyon, Université Lyon 1, CNRS, LGL-TPE, Lyon, F-69007, France
| | | | - Mathieu Thoury
- Universitè Paris-Saclay, CNRS, ministère de la Culture, UVSQ, MNHN, Institut photonique d'analyse non-destructive européen des matériaux anciens, Saint-Aubin, 91192, France
| | - Pierre Gueriau
- Institute of Earth Sciences, University of Lausanne, Géopolis, Lausanne, CH-1015, Switzerland
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20
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Blackburn DG, Stewart JR. Morphological research on amniote eggs and embryos: An introduction and historical retrospective. J Morphol 2021; 282:1024-1046. [PMID: 33393149 DOI: 10.1002/jmor.21320] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2020] [Revised: 12/31/2020] [Accepted: 01/01/2021] [Indexed: 12/21/2022]
Abstract
Evolution of the terrestrial egg of amniotes (reptiles, birds, and mammals) is often considered to be one of the most significant events in vertebrate history. Presence of an eggshell, fetal membranes, and a sizeable yolk allowed this egg to develop on land and hatch out well-developed, terrestrial offspring. For centuries, morphologically-based studies have provided valuable information about the eggs of amniotes and the embryos that develop from them. This review explores the history of such investigations, as a contribution to this special issue of Journal of Morphology, titled Developmental Morphology and Evolution of Amniote Eggs and Embryos. Anatomically-based investigations are surveyed from the ancient Greeks through the Scientific Revolution, followed by the 19th and early 20th centuries, with a focus on major findings of historical figures who have contributed significantly to our knowledge. Recent research on various aspects of amniote eggs is summarized, including gastrulation, egg shape and eggshell morphology, eggs of Mesozoic dinosaurs, sauropsid yolk sacs, squamate placentation, embryogenesis, and the phylotypic phase of embryonic development. As documented in this review, studies on amniote eggs and embryos have relied heavily on morphological approaches in order to answer functional and evolutionary questions.
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Affiliation(s)
- Daniel G Blackburn
- Department of Biology and Electron Microscopy Center, Trinity College, Hartford, Connecticut, USA
| | - James R Stewart
- Department of Biological Sciences, East Tennessee State University, Johnson City, Tennessee, USA
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21
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Kiat Y, Balaban A, Sapir N, O'Connor JK, Wang M, Xu X. Sequential Molt in a Feathered Dinosaur and Implications for Early Paravian Ecology and Locomotion. Curr Biol 2020; 30:3633-3638.e2. [PMID: 32679101 DOI: 10.1016/j.cub.2020.06.046] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2020] [Revised: 05/19/2020] [Accepted: 06/12/2020] [Indexed: 11/24/2022]
Abstract
Feather molt is an important life-history process in birds, but little is known about its evolutionary history. Here, we report on the first fossilized evidence of sequential wing feather molt, a common strategy among extant birds, identified in the Early Cretaceous four-winged dromaeosaurid Microraptor. Analysis of wing feather molt patterns and ecological properties in extant birds imply that Microraptor maintained its flight ability throughout the entire annual cycle, including the molt period. Therefore, we conclude that flight was essential for either its daily foraging or escaping from predators. Our findings propose that the development of sequential molt is the outcome of evolutionary forces to maintain flight capability throughout the entire annual cycle in both extant birds and non-avialan paravian dinosaurs from 120 mya. VIDEO ABSTRACT.
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Affiliation(s)
- Yosef Kiat
- Animal Flight Laboratory, Department of Evolutionary and Environmental Biology and the Institute of Evolution, University of Haifa, Haifa 3498838, Israel; The Nili & David Jerusalem Bird Observatory (JBO), Israel Ornithological Center, Society for the Protection of Nature in Israel, Jerusalem, Israel.
| | - Amir Balaban
- The Nili & David Jerusalem Bird Observatory (JBO), Israel Ornithological Center, Society for the Protection of Nature in Israel, Jerusalem, Israel
| | - Nir Sapir
- Animal Flight Laboratory, Department of Evolutionary and Environmental Biology and the Institute of Evolution, University of Haifa, Haifa 3498838, Israel
| | - Jingmai Kathleen O'Connor
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China; CAS Center for Excellence in Life and Paleoenvironment, Beijing 100044, China
| | - Min Wang
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China; CAS Center for Excellence in Life and Paleoenvironment, Beijing 100044, China
| | - Xing Xu
- Key Laboratory of Vertebrate Evolution and Human Origins of Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China; CAS Center for Excellence in Life and Paleoenvironment, Beijing 100044, China.
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22
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McCoy VE, Wiemann J, Lamsdell JC, Whalen CD, Lidgard S, Mayer P, Petermann H, Briggs DEG. Chemical signatures of soft tissues distinguish between vertebrates and invertebrates from the Carboniferous Mazon Creek Lagerstätte of Illinois. GEOBIOLOGY 2020; 18:560-565. [PMID: 32347003 DOI: 10.1111/gbi.12397] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2019] [Revised: 01/17/2020] [Accepted: 03/27/2020] [Indexed: 06/11/2023]
Abstract
The chemical composition of fossil soft tissues is a potentially powerful and yet underutilized tool for elucidating the affinity of problematic fossil organisms. In some cases, it has proven difficult to assign a problematic fossil even to the invertebrates or vertebrates (more generally chordates) based on often incompletely preserved morphology alone, and chemical composition may help to resolve such questions. Here, we use in situ Raman microspectroscopy to investigate the chemistry of a diverse array of invertebrate and vertebrate fossils from the Pennsylvanian Mazon Creek Lagerstätte of Illinois, and we generate a ChemoSpace through principal component analysis (PCA) of the in situ Raman spectra. Invertebrate soft tissues characterized by chitin (polysaccharide) fossilization products and vertebrate soft tissues characterized by protein fossilization products plot in completely separate, non-overlapping regions of the ChemoSpace, demonstrating the utility of certain soft tissue molecular signatures as biomarkers for the original soft tissue composition of fossil organisms. The controversial problematicum Tullimonstrum, known as the Tully Monster, groups with the vertebrates, providing strong evidence of a vertebrate rather than invertebrate affinity.
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Affiliation(s)
- Victoria E McCoy
- Department of Geosciences, University of Wisconsin, Milwaukee, Milwaukee, WI, USA
- Institute of Geosciences, University of Bonn, Bonn, Germany
| | - Jasmina Wiemann
- Department of Geology and Geophysics, Yale University, New Haven, CT, USA
| | - James C Lamsdell
- Department of Geology and Geography, West Virginia University, Morgantown, WV, USA
| | | | | | - Paul Mayer
- Field Museum of Natural History, Chicago, IL, USA
| | - Holger Petermann
- Department of Earth Sciences, Denver Museum of Nature and Science, Colorado Boulevard, Denver, CO, USA
| | - Derek E G Briggs
- Department of Geology and Geophysics, Yale University, New Haven, CT, USA
- Yale Peabody Museum of Natural History, New Haven, CT, USA
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23
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24
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Wiemann J, Crawford JM, Briggs DEG. Phylogenetic and physiological signals in metazoan fossil biomolecules. SCIENCE ADVANCES 2020; 6:eaba6883. [PMID: 32832604 PMCID: PMC7439315 DOI: 10.1126/sciadv.aba6883] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 06/01/2020] [Indexed: 06/11/2023]
Abstract
Proteins, lipids, and sugars establish animal form and function. However, the preservation of biological signals in fossil organic matter is poorly understood. Here, we used high-resolution in situ Raman microspectroscopy to analyze the molecular compositions of 113 Phanerozoic metazoan fossils and sediments. Proteins, lipids, and sugars converge in composition during fossilization through lipoxidation and glycoxidation to form endogenous N-, O-, and S-heterocyclic polymers. Nonetheless, multivariate spectral analysis reveals molecular heterogeneities: The relative abundance of glycoxidation and lipoxidation products distinguishes different tissue types. Preserved chelating ligands are diagnostic of different modes of biomineralization. Amino acid-specific fossilization products retain phylogenetic information and capture higher-rank metazoan relationships. Molecular signals survive in deep time and provide a powerful tool for reconstructing the evolutionary history of animals.
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Affiliation(s)
- Jasmina Wiemann
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT 06511, USA
| | - Jason M. Crawford
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
- Department of Microbial Pathogenesis, Yale University, New Haven, CT 06536, USA
- Chemical Biology Institute, Yale University, West Haven, CT 06516, USA
| | - Derek E. G. Briggs
- Department of Earth and Planetary Sciences, Yale University, New Haven, CT 06511, USA
- Yale Peabody Museum of Natural History, Yale University, New Haven, CT 06511, USA
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25
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Morales J. Eggshell Biliverdin as an Antioxidant Maternal Effect. Bioessays 2020; 42:e2000010. [DOI: 10.1002/bies.202000010] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Revised: 03/25/2020] [Indexed: 02/05/2023]
Affiliation(s)
- Judith Morales
- National Museum of Natural SciencesSpanish National Research Council (CSIC) c/ José Gutiérrez Abascal 2 Madrid 28006 Spain
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26
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27
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Hauber ME, Bond AL, Kouwenberg AL, Robertson GJ, Hansen ES, Holford M, Dainson M, Luro A, Dale J. The chemical basis of a signal of individual identity: shell pigment concentrations track the unique appearance of Common Murre eggs. J R Soc Interface 2020; 16:20190115. [PMID: 30966949 DOI: 10.1098/rsif.2019.0115] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
In group-living species with parental care, the accurate recognition of one's own young is critical to fitness. Because discriminating offspring within a large colonial group may be challenging, progeny of colonial breeders often display familial or individual identity signals to elicit and receive parental provisions from their own parents. For instance, the common murre (or common guillemot: Uria aalge) is a colonially breeding seabird that does not build a nest and lays and incubates an egg with an individually unique appearance. How the shell's physical and chemical properties generate this individual variability in coloration and maculation has not been studied in detail. Here, we quantified two characteristics of the avian-visible appearance of murre eggshells collected from the wild: background coloration spectra and maculation density. As predicted by the individual identity hypothesis, there was no statistical relationship between avian-perceivable shell background coloration and maculation density within the same eggs. In turn, variation in both sets of traits was statistically related to some of their physico-chemical properties, including shell thickness and concentrations of the eggshell pigments biliverdin and protoporphyrin IX. These results illustrate how individually unique eggshell appearances, suitable for identity signalling, can be generated by a small number of structural mechanisms.
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Affiliation(s)
- Mark E Hauber
- 1 Department of Animal Biology, School of Integrative Biology, University of Illinois , Urbana-Champaign, IL , USA.,2 American Museum of Natural History , New York, NY , USA
| | - Alexander L Bond
- 3 Bird Group, Department of Life Sciences, The Natural History Museum , Tring, Hertfordshire , UK
| | | | - Gregory J Robertson
- 5 Environment and Climate Change Canada , Mount Pearl, Newfoundland and Labrador , Canada
| | - Erpur S Hansen
- 6 South Iceland Nature Research Centre , Vestmannaeyjar , Iceland
| | - Mande Holford
- 2 American Museum of Natural History , New York, NY , USA.,7 Department of Chemistry, Hunter College and Graduate Center, City University of New York , New York, NY , USA
| | - Miri Dainson
- 1 Department of Animal Biology, School of Integrative Biology, University of Illinois , Urbana-Champaign, IL , USA
| | - Alec Luro
- 1 Department of Animal Biology, School of Integrative Biology, University of Illinois , Urbana-Champaign, IL , USA
| | - James Dale
- 8 School of Natural and Computational Sciences, Massey University , Auckland , New Zealand
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Yang C, Si X, Liang W, Møller AP. Spatial variation in egg polymorphism among cuckoo hosts across 4 continents. Curr Zool 2020; 66:477-483. [PMID: 33293928 PMCID: PMC7705517 DOI: 10.1093/cz/zoaa011] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2019] [Accepted: 03/12/2020] [Indexed: 11/14/2022] Open
Abstract
Although egg color polymorphism has evolved as an effective defensive adaptation to brood parasitism, spatial variations in egg color polymorphism remain poorly characterized. Here, we investigated egg polymorphism in 647 host species (68 families and 231 genera) parasitized by 41 species of Old Word cuckoos (1 family and 11 genera) across Asia, Europe, Africa, and Australia. The diversity of parasitic cuckoos differs among continents, reflecting the continent-specific intensities of parasitic selection pressure on hosts. Therefore, host egg polymorphism is expected to evolve more frequently on continents with higher cuckoo diversity. We identified egg polymorphism in 24.1% of all host species and 47.6% of all host families. The common cuckoo Cuculus canorus utilized 184 hosts (28.4% of all host species). Hosts of the common cuckoo and of Chrysococcyx species were more likely to have polymorphic eggs than hosts parasitized by other cuckoos. Both the number of host species and the host families targeted by the cuckoo species were positively correlated with the frequency of host egg polymorphism. Most host species and most hosts exhibiting egg color polymorphism were located in Asia and Africa. Host egg polymorphism was observed less frequently in Australia and Europe. Our results also suggested that egg polymorphism tends to occur more frequently in hosts that are utilized by several cuckoo species or by generalist cuckoo species. We suggest that selection pressure on hosts from a given continent increases proportionally to the number of cuckoo species, and that this selection pressure may, in turn, favor the evolution of host egg polymorphism.
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Affiliation(s)
- Canchao Yang
- Ministry of Education Key Laboratory for Tropical Plant and Animal Ecology, College of Life Sciences, Hainan Normal University, Haikou 571158, China
| | - Xingfeng Si
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences, East China Normal University, Shanghai 200241, China.,Institute of Eco-Chongming (IEC), Shanghai 202162, China
| | - Wei Liang
- Ministry of Education Key Laboratory for Tropical Plant and Animal Ecology, College of Life Sciences, Hainan Normal University, Haikou 571158, China
| | - Anders Pape Møller
- Ecologie Systématique Evolution, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, F-91405 Orsay Cedex, France
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Roy A, Pittman M, Saitta ET, Kaye TG, Xu X. Recent advances in amniote palaeocolour reconstruction and a framework for future research. Biol Rev Camb Philos Soc 2020; 95:22-50. [PMID: 31538399 PMCID: PMC7004074 DOI: 10.1111/brv.12552] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 08/12/2019] [Accepted: 08/15/2019] [Indexed: 01/24/2023]
Abstract
Preserved melanin pigments have been discovered in fossilised integumentary appendages of several amniote lineages (fishes, frogs, snakes, marine reptiles, non-avialan dinosaurs, birds, and mammals) excavated from lagerstätten across the globe. Melanisation is a leading factor in organic integument preservation in these fossils. Melanin in extant vertebrates is typically stored in rod- to sphere-shaped, lysosome-derived, membrane-bound vesicles called melanosomes. Black, dark brown, and grey colours are produced by eumelanin, and reddish-brown colours are produced by phaeomelanin. Specific morphotypes and nanostructural arrangements of melanosomes and their relation to the keratin matrix in integumentary appendages create the so-called 'structural colours'. Reconstruction of colour patterns in ancient animals has opened an exciting new avenue for studying their life, behaviour and ecology. Modern relationships between the shape, arrangement, and size of avian melanosomes, melanin chemistry, and feather colour have been applied to reconstruct the hues and colour patterns of isolated feathers and plumages of the dinosaurs Anchiornis, Sinosauropteryx, and Microraptor in seminal papers that initiated the field of palaeocolour reconstruction. Since then, further research has identified countershading camouflage patterns, and informed subsequent predictions on the ecology and behaviour of these extinct animals. However, palaeocolour reconstruction remains a nascent field, and current approaches have considerable potential for further refinement, standardisation, and expansion. This includes detailed study of non-melanic pigments that might be preserved in fossilised integuments. A common issue among existing palaeocolour studies is the lack of contextualisation of different lines of evidence and the wide variety of techniques currently employed. To that end, this review focused on fossil amniotes: (i) produces an overarching framework that appropriately reconstructs palaeocolour by accounting for the chemical signatures of various pigments, morphology and local arrangement of pigment-bearing vesicles, pigment concentration, macroscopic colour patterns, and taphonomy; (ii) provides background context for the evolution of colour-producing mechanisms; and (iii) encourages future efforts in palaeocolour reconstructions particularly of less-studied groups such as non-dinosaur archosaurs and non-archosaur amniotes.
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Affiliation(s)
- Arindam Roy
- Vertebrate Palaeontology Laboratory, Department of Earth SciencesThe University of Hong KongPokfulamHong Kong SARChina
| | - Michael Pittman
- Vertebrate Palaeontology Laboratory, Department of Earth SciencesThe University of Hong KongPokfulamHong Kong SARChina
| | - Evan T. Saitta
- Integrative Research Center, Section of Earth SciencesField Museum of Natural History1400 S. Lake Shore Drive, ChicagoIL60605U.S.A.
| | - Thomas G. Kaye
- Foundation for Scientific Advancement7023 Alhambra Drive, Sierra VistaAZ85650U.S.A.
| | - Xing Xu
- Institute of Vertebrate Paleontology and PaleoanthropologyChinese Academy of Sciences142 Xizhimenwai Street.Beijing100044China
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30
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Bailleul AM, Zheng W, Horner JR, Hall BK, Holliday CM, Schweitzer MH. Evidence of proteins, chromosomes and chemical markers of DNA in exceptionally preserved dinosaur cartilage. Natl Sci Rev 2020; 7:815-822. [PMID: 34692099 PMCID: PMC8289162 DOI: 10.1093/nsr/nwz206] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 01/09/2020] [Accepted: 01/10/2020] [Indexed: 01/13/2023] Open
Abstract
A histological ground-section from a duck-billed dinosaur nestling (Hypacrosaurus stebingeri) revealed microstructures morphologically consistent with nuclei and chromosomes in cells within calcified cartilage. We hypothesized that this exceptional cellular preservation extended to the molecular level and had molecular features in common with extant avian cartilage. Histochemical and immunological evidence supports in situ preservation of extracellular matrix components found in extant cartilage, including glycosaminoglycans and collagen type II. Furthermore, isolated Hypacrosaurus chondrocytes react positively with two DNA intercalating stains. Specific DNA staining is only observed inside the isolated cells, suggesting endogenous nuclear material survived fossilization. Our data support the hypothesis that calcified cartilage is preserved at the molecular level in this Mesozoic material, and suggest that remnants of once-living chondrocytes, including their DNA, may preserve for millions of years.
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Affiliation(s)
- Alida M Bailleul
- Key Laboratory of Vertebrate Evolution and Human Origins, Institute of Vertebrate Paleontology and Paleoanthropology, Chinese Academy of Sciences, Beijing 100044, China
- CAS Center for Excellence in Life and Paleoenvironment, Beijing 100044, China
| | - Wenxia Zheng
- Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA
| | - John R Horner
- Honors Program, Chapman University, Orange, CA 92866, USA
| | - Brian K Hall
- Department of Biology, Dalhousie University, Halifax, B3H 4R2, Canada
| | - Casey M Holliday
- Department of Pathology and Anatomical Sciences, University of Missouri, Columbia, MO 65211, USA
| | - Mary H Schweitzer
- Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695, USA
- North Carolina Museum of Natural Sciences, Raleigh, NC 27601, USA
- Department of Geology, University of Lund, 22362, Sweden
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31
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Nagy J, Hauber ME, Hartley IR, Mainwaring MC. Correlated evolution of nest and egg characteristics in birds. Anim Behav 2019. [DOI: 10.1016/j.anbehav.2019.10.015] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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32
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Bailleul AM, O’Connor J, Schweitzer MH. Dinosaur paleohistology: review, trends and new avenues of investigation. PeerJ 2019; 7:e7764. [PMID: 31579624 PMCID: PMC6768056 DOI: 10.7717/peerj.7764] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Accepted: 08/26/2019] [Indexed: 12/12/2022] Open
Abstract
In the mid-19th century, the discovery that bone microstructure in fossils could be preserved with fidelity provided a new avenue for understanding the evolution, function, and physiology of long extinct organisms. This resulted in the establishment of paleohistology as a subdiscipline of vertebrate paleontology, which has contributed greatly to our current understanding of dinosaurs as living organisms. Dinosaurs are part of a larger group of reptiles, the Archosauria, of which there are only two surviving lineages, crocodilians and birds. The goal of this review is to document progress in the field of archosaur paleohistology, focusing in particular on the Dinosauria. We briefly review the "growth age" of dinosaur histology, which has encompassed new and varied directions since its emergence in the 1950s, resulting in a shift in the scientific perception of non-avian dinosaurs from "sluggish" reptiles to fast-growing animals with relatively high metabolic rates. However, fundamental changes in growth occurred within the sister clade Aves, and we discuss this major evolutionary transition as elucidated by histology. We then review recent innovations in the field, demonstrating how paleohistology has changed and expanded to address a diversity of non-growth related questions. For example, dinosaur skull histology has elucidated the formation of curious cranial tissues (e.g., "metaplastic" tissues), and helped to clarify the evolution and function of oral adaptations, such as the dental batteries of duck-billed dinosaurs. Lastly, we discuss the development of novel techniques with which to investigate not only the skeletal tissues of dinosaurs, but also less-studied soft-tissues, through molecular paleontology and paleohistochemistry-recently developed branches of paleohistology-and the future potential of these methods to further explore fossilized tissues. We suggest that the combination of histological and molecular methods holds great potential for examining the preserved tissues of dinosaurs, basal birds, and their extant relatives. This review demonstrates the importance of traditional bone paleohistology, but also highlights the need for innovation and new analytical directions to improve and broaden the utility of paleohistology, in the pursuit of more diverse, highly specific, and sensitive methods with which to further investigate important paleontological questions.
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Affiliation(s)
- Alida M. Bailleul
- Key Laboratory of Vertebrate Evolution and Human Origins of the Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Beijing, China
- CAS Center for Excellence in Life and Paleoenvironment, Beijing, China
| | - Jingmai O’Connor
- Key Laboratory of Vertebrate Evolution and Human Origins of the Chinese Academy of Sciences, Institute of Vertebrate Paleontology and Paleoanthropology, Beijing, China
- CAS Center for Excellence in Life and Paleoenvironment, Beijing, China
| | - Mary H. Schweitzer
- Department of Biology, North Carolina State University, Raleigh, NC, USA
- North Carolina Museum of Natural Science, Raleigh, NC, USA
- Department of Geology, Lund University, Lund, Sweden
- Museum of the Rockies, Montana State University, Bozeman, MT, USA
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33
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Shawkey MD, D’Alba L. Egg pigmentation probably has an early Archosaurian origin. Nature 2019; 570:E43-E45. [DOI: 10.1038/s41586-019-1282-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2018] [Accepted: 04/17/2019] [Indexed: 11/09/2022]
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34
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Wiemann J, Yang TR, Norell MA. Reply to: Egg pigmentation probably has an Archosaurian origin. Nature 2019; 570:E46-E50. [DOI: 10.1038/s41586-019-1283-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2018] [Accepted: 03/25/2019] [Indexed: 11/09/2022]
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35
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Saitta ET, Liang R, Lau MCY, Brown CM, Longrich NR, Kaye TG, Novak BJ, Salzberg SL, Norell MA, Abbott GD, Dickinson MR, Vinther J, Bull ID, Brooker RA, Martin P, Donohoe P, Knowles TDJ, Penkman KEH, Onstott T. Cretaceous dinosaur bone contains recent organic material and provides an environment conducive to microbial communities. eLife 2019; 8:e46205. [PMID: 31210129 PMCID: PMC6581507 DOI: 10.7554/elife.46205] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2019] [Accepted: 05/12/2019] [Indexed: 12/12/2022] Open
Abstract
Fossils were thought to lack original organic molecules, but chemical analyses show that some can survive. Dinosaur bone has been proposed to preserve collagen, osteocytes, and blood vessels. However, proteins and labile lipids are diagenetically unstable, and bone is a porous open system, allowing microbial/molecular flux. These 'soft tissues' have been reinterpreted as biofilms. Organic preservation versus contamination of dinosaur bone was examined by freshly excavating, with aseptic protocols, fossils and sedimentary matrix, and chemically/biologically analyzing them. Fossil 'soft tissues' differed from collagen chemically and structurally; while degradation would be expected, the patterns observed did not support this. 16S rRNA amplicon sequencing revealed that dinosaur bone hosted an abundant microbial community different from lesser abundant communities of surrounding sediment. Subsurface dinosaur bone is a relatively fertile habitat, attracting microbes that likely utilize inorganic nutrients and complicate identification of original organic material. There exists potential post-burial taphonomic roles for subsurface microorganisms.
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Affiliation(s)
- Evan T Saitta
- Integrative Research Center, Section of Earth SciencesField Museum of Natural HistoryChicagoUnited States
| | - Renxing Liang
- Department of GeosciencesPrinceton UniversityPrincetonUnited States
| | - Maggie CY Lau
- Department of GeosciencesPrinceton UniversityPrincetonUnited States
- Institute of Deep-Sea Science and EngineeringChinese Academy of SciencesSanyaChina
| | - Caleb M Brown
- Royal Tyrrell Museum of PalaeontologyDrumhellerCanada
| | - Nicholas R Longrich
- Department of Biology and BiochemistryUniversity of BathBathUnited Kingdom
- Milner Centre for EvolutionUniversity of BathBathUnited Kingdom
| | - Thomas G Kaye
- Foundation for Scientific AdvancementSierra VistaUnited States
| | - Ben J Novak
- Revive and RestoreSan FranciscoUnited States
| | - Steven L Salzberg
- Department of Biomedical Engineering, Center for Computational Biology, McKusick-Nathans Institute of Genetic MedicineJohns Hopkins UniversityBaltimoreUnited States
- Department of Computer Science, Center for Computational Biology, McKusick-Nathans Institute of Genetic MedicineJohns Hopkins UniversityBaltimoreUnited States
- Department of Biostatistics, Center for Computational Biology, McKusick-Nathans Institute of Genetic MedicineJohns Hopkins UniversityBaltimoreUnited States
| | - Mark A Norell
- Division of PaleontologyAmerican Museum of Natural HistoryNew YorkUnited States
| | - Geoffrey D Abbott
- School of Natural and Environmental SciencesNewcastle UniversityNewcastle upon TyneUnited Kingdom
| | | | - Jakob Vinther
- School of Earth SciencesUniversity of BristolBristolUnited Kingdom
- School of Biological SciencesUniversity of BristolBristolUnited Kingdom
| | - Ian D Bull
- School of ChemistryUniversity of BristolBristolUnited Kingdom
| | | | - Peter Martin
- School of PhysicsUniversity of BristolBristolUnited Kingdom
| | - Paul Donohoe
- School of Natural and Environmental SciencesNewcastle UniversityNewcastle upon TyneUnited Kingdom
| | - Timothy DJ Knowles
- School of ChemistryUniversity of BristolBristolUnited Kingdom
- School of ArtsUniversity of BristolBristolUnited Kingdom
| | | | - Tullis Onstott
- Department of GeosciencesPrinceton UniversityPrincetonUnited States
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36
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An Early Cretaceous enantiornithine (Aves) preserving an unlaid egg and probable medullary bone. Nat Commun 2019; 10:1275. [PMID: 30894527 PMCID: PMC6426974 DOI: 10.1038/s41467-019-09259-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 03/01/2019] [Indexed: 11/09/2022] Open
Abstract
Understanding non-crown dinosaur reproduction is hindered by a paucity of directly associated adults with reproductive traces. Here we describe a new enantiornithine, Avimaia schweitzerae gen. et sp. nov., from the Lower Cretaceous Xiagou Formation with an unlaid egg two-dimensionally preserved within the abdominothoracic cavity. Ground-sections reveal abnormal eggshell proportions, and multiple eggshell layers best interpreted as a multi-layered egg resulting from prolonged oviductal retention. Fragments of the shell membrane and cuticle are both preserved. SEM reveals that the cuticle consists of nanostructures resembling those found in neornithine eggs adapted for infection-prone environments, which are hypothesized to represent the ancestral avian condition. The femur preserves small amounts of probable medullary bone, a tissue found today only in reproductively active female birds. To our knowledge, no other occurrence of Mesozoic medullary bone is associated with indications of reproductive activity, such as a preserved egg, making our identification unique, and strongly supported. The fossil record of the reproductive traits of early birds is limited. Here, Bailleul and colleagues describe the Cretaceous enantiornithine bird Avimaia schweitzerae, which preserves an unlaid egg in the abdominal cavity and putative medullary bone.
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37
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Li Z, Ren T, Li W, Zhou Y, Han R, Li H, Jiang R, Yan F, Sun G, Liu X, Tian Y, Kang X. Association Between the Methylation Statuses at CpG Sites in the Promoter Region of the SLCO1B3, RNA Expression and Color Change in Blue Eggshells in Lushi Chickens. Front Genet 2019; 10:161. [PMID: 30863430 PMCID: PMC6399514 DOI: 10.3389/fgene.2019.00161] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 02/14/2019] [Indexed: 12/31/2022] Open
Abstract
The formation mechanism underlying the blue eggshell characteristic has been discovered in birds, and SLCO1B3 is the key gene that regulates the blue eggshell color. Insertion of an endogenous retrovirus, EAV-HP, in the SLCO1B3 5′ flanking region promotes SLCO1B3 expression in the chicken shell gland, and this expression causes bile salts to enter the shell gland, where biliverdin is secreted into the eggshell, forming a blue shell. However, at different laying stages of the same group of chickens, the color of the eggshell can vary widely, and the molecular mechanism underlying the eggshell color change remains unknown. Therefore, to reveal the molecular mechanism of the blue eggshell color variations, we analyzed the change in the eggshell color during the laying period. The results indicated that the eggshell color in Lushi chickens can be divided into three stages: 20–25 weeks for dark blue, 26–45 weeks for medium blue, and 46–60 weeks for light blue. We further investigated the expression and methylation levels of the SLCO1B3 gene at eight different weeks, finding that the relative expression of SLCO1B3 was significantly higher at 25 and 30 weeks than at other laying weeks. Furthermore, the overall methylation rate of the SLCO1B3 gene in Lushi chickens increased gradually with increasing weeks of egg production, as shown by bisulfite sequencing PCR. Pearson correlation analysis showed that methylation of the promoter region of SLCO1B3 was significantly negatively correlated with both SLCO1B3 expression in the shell gland tissue and eggshell color. In addition, we predicted that CpG5 and CpG8 may be key sites for regulating SLCO1B3 gene transcription. Our findings show that as the level of methylation increases, methylation of the CpG5 and CpG8 sites hinders the binding of transcription factors to the promoter, reducing SLCO1B3 expression during the late period and resulting in a lighter eggshell color.
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Affiliation(s)
- Zhuanjian Li
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Tuanhui Ren
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China
| | - Wenya Li
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China
| | - Yu Zhou
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China
| | - Ruili Han
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Hong Li
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Ruirui Jiang
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Fengbin Yan
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Guirong Sun
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Xiaojun Liu
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Yadong Tian
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
| | - Xiangtao Kang
- College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, China.,Henan Innovative Engineering Research Center of Poultry Germplasm Resource, Zhengzhou, China
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38
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L'Herpiniere KL, O'Neill LG, Russell AF, Duursma DE, Griffith SC. Unscrambling variation in avian eggshell colour and patterning in a continent-wide study. ROYAL SOCIETY OPEN SCIENCE 2019; 6:181269. [PMID: 30800374 PMCID: PMC6366205 DOI: 10.1098/rsos.181269] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Accepted: 01/09/2019] [Indexed: 06/09/2023]
Abstract
The evolutionary drivers underlying marked variation in the pigmentation of eggs within many avian species remains unclear. The leading hypotheses proposed to explain such variation advocate the roles of genetic differences, signalling and/or structural integrity. One means of testing among these hypotheses is to capitalize on museum collections of eggs obtained throughout a broad geographical range of a species to ensure sufficient variation in predictors pertaining to each hypothesis. Here, we measured coloration and patterning in eggs from 272 clutches of Australian magpies (Cracticus tibicen) collected across most of their geographical range of ca 7 million km2; encompassing eight subspecies, variation in environmental parameters, and the presence/absence of a brood parasite. We found considerable variation in background colour, as well as in the extent and distribution of patterning across eggs. There was little evidence that this variation was explained by subspecies or the contemporary presence of a brood parasite. However, measures of maximum temperature, leaf area index and soil calcium all contributed to variation in egg appearance, although their explanatory power was relatively low. Our results suggest that multiple factors combine to influence egg appearance in this species, and that even in species with highly variable eggs, coloration is not readily explained.
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Affiliation(s)
- Kiara L. L'Herpiniere
- Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Louis G. O'Neill
- Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
- Centre for Ecology and Conservation, University of Exeter Cornwall Campus, Penryn TR10 9FE, UK
| | - Andrew F. Russell
- Centre for Ecology and Conservation, University of Exeter Cornwall Campus, Penryn TR10 9FE, UK
| | - Daisy Englert Duursma
- Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
| | - Simon C. Griffith
- Department of Biological Sciences, Macquarie University, Sydney, New South Wales 2109, Australia
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