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For: Zhang Q, Cheng T, Jin S, Guo Y, Wu Y, Liu D, Xu X, Sun Y, Li Z, He H, Xia Q. Genome-wide open chromatin regions and their effects on the regulation of silk protein genes in Bombyx mori. Sci Rep 2017;7:12919. [PMID: 29018289 DOI: 10.1038/s41598-017-13186-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2017] [Accepted: 09/19/2017] [Indexed: 11/15/2022]  Open
Number Cited by Other Article(s)
1
Ning K, Sun T, Wang Z, Li H, Fang P, Cai X, Wu X, Xu M, Xu P. Selective penetration of fullerenol through pea seed coats mitigates osmosis-repressed germination via chromatin remodeling and transcriptional reprograming. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2024;104:6008-6017. [PMID: 38437455 DOI: 10.1002/jsfa.13429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 02/26/2024] [Accepted: 02/28/2024] [Indexed: 03/06/2024]
2
Sun Y, Shi W, Zhang Q, Guo H, Dong Z, Zhao P, Xia Q. Multi-Omics Integration to Reveal the Mechanism of Sericin Inhibiting LPS-Induced Inflammation. Int J Mol Sci 2022;24:ijms24010259. [PMID: 36613700 PMCID: PMC9820220 DOI: 10.3390/ijms24010259] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Revised: 12/16/2022] [Accepted: 12/20/2022] [Indexed: 12/28/2022]  Open
3
Exploration of Tools for the Interpretation of Human Non-Coding Variants. Int J Mol Sci 2022;23:ijms232112977. [PMID: 36361767 PMCID: PMC9654743 DOI: 10.3390/ijms232112977] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 10/17/2022] [Accepted: 10/23/2022] [Indexed: 02/01/2023]  Open
4
Mikec Š, Šimon M, Morton NM, Atanur SS, Konc J, Dovč P, Horvat S, Kunej T. Genetic variants of the hypoxia-inducible factor 3 alpha subunit (Hif3a) gene in the Fat and Lean mouse selection lines. Mol Biol Rep 2022;49:4619-4631. [PMID: 35347545 DOI: 10.1007/s11033-022-07309-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 02/25/2022] [Indexed: 10/18/2022]
5
Nowling RJ, Behura SK, Halfon MS, Emrich SJ, Duman-Scheel M. PeakMatcher facilitates updated Aedes aegypti embryonic cis-regulatory element map. Hereditas 2021;158:7. [PMID: 33509290 PMCID: PMC7844911 DOI: 10.1186/s41065-021-00172-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Accepted: 01/22/2021] [Indexed: 11/10/2022]  Open
6
Matsuda–Imai N, Katsuma S. Characterization of Bombyx mori nucleopolyhedrovirus infection in fat body-derived Bombyx mori cultured cells. J Invertebr Pathol 2020;177:107476. [DOI: 10.1016/j.jip.2020.107476] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Revised: 09/19/2020] [Accepted: 09/21/2020] [Indexed: 01/28/2023]
7
Cong J, Tao C, Zhang X, Zhang H, Cheng T, Liu C. Transgenic Ectopic Overexpression of Broad Complex (BrC-Z2) in the Silk Gland Inhibits the Expression of Silk Fibroin Genes of Bombyx mori. INSECTS 2020;11:insects11060374. [PMID: 32560131 PMCID: PMC7349191 DOI: 10.3390/insects11060374] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/28/2020] [Revised: 06/10/2020] [Accepted: 06/12/2020] [Indexed: 11/23/2022]
8
Tomoyasu Y, Halfon MS. How to study enhancers in non-traditional insect models. ACTA ACUST UNITED AC 2020;223:223/Suppl_1/jeb212241. [PMID: 32034049 DOI: 10.1242/jeb.212241] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
9
Li B, Wang X, Li Z, Lu C, Zhang Q, Chang L, Li W, Cheng T, Xia Q, Zhao P. Transcriptome-wide analysis of N6-methyladenosine uncovers its regulatory role in gene expression in the lepidopteran Bombyx mori. INSECT MOLECULAR BIOLOGY 2019;28:703-715. [PMID: 30957943 DOI: 10.1111/imb.12584] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
10
Zhang Q, Cheng T, Sun Y, Wang Y, Feng T, Li X, Liu L, Li Z, Liu C, Xia Q, He H. Synergism of open chromatin regions involved in regulating genes in Bombyx mori. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2019;110:10-18. [PMID: 31004794 DOI: 10.1016/j.ibmb.2019.04.014] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2018] [Revised: 03/18/2019] [Accepted: 04/13/2019] [Indexed: 06/09/2023]
11
McKay DJ. Using Formaldehyde-Assisted Isolation of Regulatory Elements (FAIRE) to Identify Functional Regulatory DNA in Insect Genomes. Methods Mol Biol 2019;1858:89-97. [PMID: 30414113 DOI: 10.1007/978-1-4939-8775-7_8] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
12
Xu Y, Lee JH, Li Z, Wang L, Ordog T, Bailey RC. A droplet microfluidic platform for efficient enzymatic chromatin digestion enables robust determination of nucleosome positioning. LAB ON A CHIP 2018;18:2583-2592. [PMID: 30046796 PMCID: PMC6103843 DOI: 10.1039/c8lc00599k] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
13
Wang X, Li Z, Zhang Q, Li B, Lu C, Li W, Cheng T, Xia Q, Zhao P. DNA methylation on N6-adenine in lepidopteran Bombyx mori. BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS 2018;1861:S1874-9399(18)30215-3. [PMID: 30071347 DOI: 10.1016/j.bbagrm.2018.07.013] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2018] [Revised: 07/18/2018] [Accepted: 07/27/2018] [Indexed: 10/28/2022]
14
Min JW, Koh Y, Kim DY, Kim HL, Han JA, Jung YJ, Yoon SS, Choi SS. Identification of Novel Functional Variants of SIN3A and SRSF1 among Somatic Variants in Acute Myeloid Leukemia Patients. Mol Cells 2018;41:465-475. [PMID: 29764005 PMCID: PMC5974623 DOI: 10.14348/molcells.2018.0051] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2018] [Revised: 02/25/2018] [Accepted: 03/08/2018] [Indexed: 12/18/2022]  Open
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