1
|
Tang Q, Moeskjær S, Cotton A, Dai W, Wang X, Yan X, Daniell TJ. Organic fertilization reduces nitrous oxide emission by altering nitrogen cycling microbial guilds favouring complete denitrification at soil aggregate scale. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 946:174178. [PMID: 38917905 DOI: 10.1016/j.scitotenv.2024.174178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Revised: 06/17/2024] [Accepted: 06/19/2024] [Indexed: 06/27/2024]
Abstract
Agricultural management practices can induce changes in soil aggregation structure that alter the microbial nitrous oxide (N2O) production and reduction processes occurring at the microscale, leading to large-scale consequences for N2O emissions. However, the mechanistic understanding of how organic fertilization affects these context-dependent small-scale N2O emissions and associated key nitrogen (N) cycling microbial communities is lacking. Here, denitrification gas (N2O, N2) and potential denitrification capacity N2O/(N2O + N2) were assessed by automated gas chromatography in different soil aggregates (>2 mm, 2-0.25 and <0.25 mm), while associated microbial communities were assessed by sequencing and qPCR of N2O-producing (nirK and nirS) and reducing (nosZ clade I and II) genes. The results indicated that organic fertilization reduced N2O emissions by enhancing the conversion of N2O to N2 in all aggregate sizes. Moreover, potential N2O production and reduction hotspots occurred in smaller soil aggregates, with the degree depending on organic fertilizer type and application rate. Further, significantly higher abundance and diversity of nosZ clades relative to nirK and nirS revealed complete denitrification promoted through selection of denitrifying communities at microscales favouring N2O reduction. Communities associated with high and low emission treatments form modules with specific sequence types which may be diagnostic of emission levels. Taken together, these findings suggest that organic fertilizers reduced N2O emissions through influencing soil factors and patterns of niche partitioning between N2O-producing and reducing communities within soil aggregates, and selection for communities that overall are more likely to consume than emit N2O. These findings are helpful in strengthening the ability to predict N2O emissions from agricultural soils under organic fertilization as well as contributing to the development of net-zero carbon strategies for sustainable agriculture.
Collapse
Affiliation(s)
- Quan Tang
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Yangzhou University, Yangzhou 225009, China
| | - Sara Moeskjær
- Microbiology to Molecular Microbiology: Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Anne Cotton
- Microbiology to Molecular Microbiology: Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK; Department of Earth and Environmental Sciences, The University of Manchester, Williamson Building, Manchester M13 9PY, UK; Manchester Institute of Biotechnology, The University of Manchester, John Garside Building, 131 Princess Street, Manchester M1 7DN, UK
| | - Wenxia Dai
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Yangzhou University, Yangzhou 225009, China
| | - Xiaozhi Wang
- Key Laboratory of Arable Land Quality Monitoring and Evaluation, Ministry of Agriculture and Rural Affairs, Yangzhou University, Yangzhou 225009, China
| | - Xiaoyuan Yan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
| | - Tim J Daniell
- Microbiology to Molecular Microbiology: Biochemistry to Disease, School of Biosciences, University of Sheffield, Sheffield S10 2TN, UK.
| |
Collapse
|
2
|
Saghaï A, Hallin S. Diversity and ecology of NrfA-dependent ammonifying microorganisms. Trends Microbiol 2024; 32:602-613. [PMID: 38462391 DOI: 10.1016/j.tim.2024.02.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 02/11/2024] [Accepted: 02/13/2024] [Indexed: 03/12/2024]
Abstract
Nitrate ammonifiers are a taxonomically diverse group of microorganisms that reduce nitrate to ammonium, which is released, and thereby contribute to the retention of nitrogen in ecosystems. Despite their importance for understanding the fate of nitrate, they remain a largely overlooked group in the nitrogen cycle. Here, we present the latest advances on free-living microorganisms using NrfA to reduce nitrite during ammonification. We describe their diversity and ecology in terrestrial and aquatic environments, as well as the environmental factors influencing the competition for nitrate with denitrifiers that reduce nitrate to gaseous nitrogen species, including the greenhouse gas nitrous oxide (N2O). We further review the capacity of ammonifiers for other redox reactions, showing that they likely play multiple roles in the cycling of elements.
Collapse
Affiliation(s)
- Aurélien Saghaï
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Sara Hallin
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden.
| |
Collapse
|
3
|
Zhang S, Xia X, Yu L, Liu S, Li X, Wang J, Zheng Y, Han L, Tan Q, Yang Z. Biogeography and impact of nitrous oxide reducers in rivers across a broad environmental gradient on emission rates. Environ Microbiol 2024; 26:e16622. [PMID: 38757466 DOI: 10.1111/1462-2920.16622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 04/04/2024] [Indexed: 05/18/2024]
Abstract
Microbial communities that reduce nitrous oxide (N2O) are divided into two clades, nosZI and nosZII. These clades significantly differ in their ecological niches and their implications for N2O emissions in terrestrial environments. However, our understanding of N2O reducers in aquatic systems is currently limited. This study investigated the relative abundance and diversity of nosZI- and nosZII-type N2O reducers in rivers and their impact on N2O emissions. Our findings revealed that stream sediments possess a high capacity for N2O reduction, surpassing N2O production under high N2O/NO3- ratio conditions. This study, along with others in freshwater systems, demonstrated that nosZI marginally dominates more often in rivers. While microbes containing either nosZI and nosZII were crucial in reducing N2O emissions, the net contribution of nosZII-containing microbes was more significant. This can be attributed to the nir gene co-occurring more frequently with the nosZI gene than with the nosZII gene. The diversity within each clade also played a role, with nosZII species being more likely to function as N2O sinks in streams with higher N2O concentrations. Overall, our findings provide a foundation for a better understanding of the biogeography of stream N2O reducers and their effects on N2O emissions.
Collapse
Affiliation(s)
- Sibo Zhang
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| | - Xinghui Xia
- Key Laboratory of Water and Sediment Sciences of Ministry of Education/State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Leilei Yu
- Key Laboratory of Water and Sediment Sciences of Ministry of Education/State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Shaoda Liu
- Key Laboratory of Water and Sediment Sciences of Ministry of Education/State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Xiaokang Li
- School of Environmental and Material Engineering, Yantai University, Yantai, China
| | - Junfeng Wang
- Key Laboratory of Water and Sediment Sciences of Ministry of Education/State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, China
| | - Yue Zheng
- State Key Laboratory of Marine Environmental Science/College of the Environment and Ecology, Xiamen University, Xiamen, China
| | - Lanfang Han
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| | - Qian Tan
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| | - Zhifeng Yang
- Guangdong Provincial Key Laboratory of Water Quality Improvement and Ecological Restoration for Watersheds, Institute of Environmental and Ecological Engineering, Guangdong University of Technology, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, China
| |
Collapse
|
4
|
Xu P, Li Z, Guo S, Jones DL, Wang J, Han Z, Zou J. Lower soil nitrogen-oxide emissions associated with enhanced denitrification under replacing mineral fertilizer with manure in orchard soils. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 921:171192. [PMID: 38401727 DOI: 10.1016/j.scitotenv.2024.171192] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 01/26/2024] [Accepted: 02/21/2024] [Indexed: 02/26/2024]
Abstract
Emerging evidence suggests that replacing mineral fertilizers with organic livestock manure can effectively suppress reactive gaseous nitrogen (N) emissions from soils. However, the extent of this mitigation potential and the underlying microbial mechanisms in orchards remain unclear. To address this knowledge gap, we measured nitrous and nitric oxide (N2O and NO) emissions, microbial N cycling gene abundance, and N2O isotopomer ratios in pear and citrus orchards under three different fertilization regimes: no fertilization, mineral fertilizer, and manure plus mineral fertilizer. The results showed that although manure application caused large transient peaks of N2O, it reduced cumulative emissions of N2O and NO by an average of 20 % and 17 %, respectively, compared to the mineral fertilizer treatment. Partial replacement of mineral fertilizers with manure enhanced the contribution of AOA to nitrification and reduced the contribution of AOB, thus reducing N2O emissions from nitrification. Isotope analysis suggested that the pathway for N2O production in the soils of both orchards was dominated by bacterial denitrification and nitrifier denitrification. The manure treatment reduced the ratio of denitrification products. Additionally, the dual isotope mixing model results indicated that partially replacing mineral fertilizers with manure could promote soil denitrification, resulting in more N2O being reduced. N-oxide emissions were on average 67 % higher in the pear orchard than in the citrus orchard, probably due to the differences in soil physicochemical properties and growth habits between the two orchards. These findings underscore the potential of partially replacing mineral fertilizers with organic manure in orchards to reduce gaseous N emissions, contributing to the transition towards environmentally sustainable and climate-smart agricultural practices.
Collapse
Affiliation(s)
- Pinshang Xu
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Zhutao Li
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Shumin Guo
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Davey L Jones
- School of Environmental and Natural Sciences, Bangor University, Bangor, Gwynedd, LL57192UW, UK; SoilsWest, Centre for Sustainable Farming Systems, Food Futures Institute, Murdoch University, Murdoch, WA, 6150, Australia
| | - Jinyang Wang
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| | - Zhaoqiang Han
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China.
| | - Jianwen Zou
- Jiangsu Key Laboratory of Low Carbon Agriculture and GHGs Mitigation, College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China; Jiangsu Key Lab and Engineering Center for Solid Organic Waste Utilization, Jiangsu Collaborative Innovation Center for Solid Organic Waste Resource Utilization, Nanjing Agricultural University, Nanjing 210095, China
| |
Collapse
|
5
|
Wang X, Kong Q, Cheng Y, Xie C, Yuan Y, Zheng H, Yu X, Yao H, Quan Y, You X, Zhang C, Li Y. Cattle manure hydrochar posed a higher efficiency in elevating tomato productivity and decreasing greenhouse gas emissions than plant straw hydrochar in a coastal soil. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:168749. [PMID: 38007120 DOI: 10.1016/j.scitotenv.2023.168749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 11/14/2023] [Accepted: 11/19/2023] [Indexed: 11/27/2023]
Abstract
Rehabilitation of degraded soil health using high-performance and sustainable measures are urgently required for restoring soil primary productivity and mitigating greenhouse gas (GHG) emission of coastal ecosystems. However, the effect of livestock manure derived hydrochar on GHG emission and plant productivity in the coastal salt-affected soils, one of blue carbon (C) ecosystems, was poorly understood. Therefore, a cattle manure hydrochar (CHC) produced at 220 °C was prepared to explore its effects and mechanisms on CH4 and N2O emissions and tomato growth and fruit quality in a coastal soil in comparison with corresponding hydrochars derived from plant straws, i.e., sesbania straw hydrochars (SHC) and reed straw hydrochars (RHC) using a 63-day soil column experiment. The results showed that CHC posed a greater efficiency in reducing the global warming potential (GWP, 54.6 % (36.7 g/m2) vs. 45.5-45.6 % (22.2-30.6 g/m2)) than those of RHC and SHC. For the plant growth, three hydrochars at 3 % (w/w) significantly increased dry biomass of tomato shoot and fruit by 12.4-49.5 % and 48.6-165 %, respectively. Moreover, CHC showed the highest promotion effect on shoot and fruit dry biomass of tomato, followed by SHC ≈ RHC. Application of SHC, CHC and RHC significantly elevated the tomato sweetness compared with CK, with the order of CHC (54.4 %) > RHC (35.6 %) > SHC (22.1 %). Structural equation models revealed that CHC-depressed denitrification and methanogen mainly contributed to decreased GHG emissions. Increased soil phosphorus availability due to labile phosphorus supply from CHC dominantly accounted for elevated tomato growth and fruit production. Comparably, SHC-altered soil properties (e.g., decreased pH and increased total carbon content) determined variations of GHG emission and tomato growth. The findings provide the high-performance strategies to enhance soil primary productivity and mitigate GHG emissions in the blue C ecosystems.
Collapse
Affiliation(s)
- Xiao Wang
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China
| | - Qingxian Kong
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Yadong Cheng
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China
| | - Chenghao Xie
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Yuan Yuan
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China
| | - Hao Zheng
- Institute of Coastal Environmental Pollution Control, College of Environmental Science and Engineering, Sanya Oceanographic Institution, Ministry of Education Key Laboratory of Marine Environment and Ecology, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266100, China; Marine Ecology and Environmental Science Laboratory, Qingdao National Laboratory of Marine Science and Technology, Qingdao 266071, China
| | - Xueyang Yu
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China
| | - Hui Yao
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China
| | - Yue Quan
- Department of Geography and Marine Sciences, Yanbian University, Hunchun, Jilin 133000, China
| | - Xiangwei You
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China.
| | - Chengsheng Zhang
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China
| | - Yiqiang Li
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China; National Center of Technology Innovation for Comprehensive Utilization of Saline-Alkali Land, Dongying 257300, China; Qingdao Key Laboratory of Coastal Saline-alkali Land Resources Mining and Biological Breeding, Qingdao 266101, China.
| |
Collapse
|
6
|
Liu C, Liu H, Liu X, Li G, Zhang Y, Zhang M, Li Z. Metagenomic analysis insights into the influence of 3,4-dimethylpyrazole phosphate application on nitrous oxide mitigation efficiency across different climate zones in Eastern China. ENVIRONMENTAL RESEARCH 2023; 236:116761. [PMID: 37516265 DOI: 10.1016/j.envres.2023.116761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 07/13/2023] [Accepted: 07/26/2023] [Indexed: 07/31/2023]
Abstract
Excessive nitrogen (N) fertilization in agroecological systems increases nitrous oxide (N2O) emissions. 3,4-dimethylpyrazole phosphate (DMPP) is used to mitigate N2O losses. The influence of DMPP efficiency on N2O mitigation was clearly affected by spatiotemporal heterogeneity. Using field and incubation experiments combined with metagenomic sequencing, we aimed to investigate DMPP efficiency and the underlying microbial mechanisms in dark-brown (Siping, SP), fluvo-aquic (Cangzhou, CZ; Xinxiang, XX), and red soil (Wenzhou, WZ) from diverse climatic zones. In the field experiments, the DMPP efficiency in N2O mitigation ranged from 51.6% to 89.9%, in the order of XX, CZ, SP, and WZ. The DMPP efficiency in the incubation experiments ranged from 58.3% to 93.9%, and the order of efficiency from the highest to lowest was the same as that of the field experiments. Soil organic matter, total N, pH, texture, and taxonomic and functional α-diversity were important soil environment and microbial factors for DMPP efficiency. DMPP significantly enriched ammonia-oxidizing archaea (AOA) and nitrite-oxidizing bacteria (NOB), which promoted N-cycling with low N2O emissions. Random forest (RF) and regression analyses found that an AOA (Nitrosocosmicus) and NOB (Nitrospina) demonstrated important and positive correlation with DMPP efficiency. Moreover, genes associated with carbohydrate metabolism were important for DMPP efficiency and could influenced N-cycling and DMPP metabolism. The similar DMPP efficiency indicated that the variation in DMPP efficiency was significantly due to soil physicochemical and microbial variations. In conclusion, filling the knowledge gap regarding the response of DMPP efficiency to abiotic and biotic factors could be beneficial in DMPP applications, and in adapting more efficient strategies to improve DMPP efficiency and mitigate N2O emissions in multiple regions.
Collapse
Affiliation(s)
- Churong Liu
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China; College of Natural Resources and Environment, Joint Institute for Environmental Research and Education, South China Agricultural University, Guangzhou, 10642, China
| | - Hongrun Liu
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Xueqing Liu
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| | - Gang Li
- Key Laboratory of Northeast Crop Physiology Ecology and Cultivation, Ministry of Agriculture in People's Republic of China, Jilin Academy of Agricultural Sciences, Changchun, 130033, China.
| | - Yushi Zhang
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China.
| | - Mingcai Zhang
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China.
| | - Zhaohu Li
- State Key Laboratory of Plant Environmental Resilience, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100193, China
| |
Collapse
|
7
|
You X, Wang X, Sun R, Liu Q, Fang S, Kong Q, Zhang X, Xie C, Zheng H, Li H, Li Y. Hydrochar more effectively mitigated nitrous oxide emissions than pyrochar from a coastal soil of the Yellow River Delta, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 858:159628. [PMID: 36283526 DOI: 10.1016/j.scitotenv.2022.159628] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/05/2022] [Revised: 10/08/2022] [Accepted: 10/18/2022] [Indexed: 06/16/2023]
Abstract
Application of char amendments (e.g., pyrochar or biochar, hydrochar) in degraded soils is proposed as a promising solution for mitigating climate change via carbon sequestration and greenhouse gases (GHGs) emission reduction. However, the hydrochar-mediated microbial modulation mechanisms underlying N2O emissions from coastal salt-affected soils, one of essential blue C ecosystems, were poorly understood. Therefore, a wheat straw derived hydrochar (SHC) produced at 220 °C was prepared to investigate its effects on N2O emissions from a coastal salt-affected soil in the Yellow River Delta and to distinguish the microbial regulation mechanisms in comparison with corresponding pyrochar pyrolyzed at 500 °C (SPC) using a 28-day soil microcosm experiment. Compared with SPC, the acidic SHC (pH 4.15) enriched in oxygenated functional groups, labile C and N constituents. SHC application more efficiently depressed cumulative soil N2O emissions (48.4-61.1 % vs 5.57-45.2 %) than those of SPC. SHC-induced inhibition of ammonia-oxidizing gene (amoA)-mediated nitrification and promotion of full reduction of N2O to N2 by nitrous oxide reductase gene (nosZ) were the underlying microbial mechanisms. Structural equation models further revealed that SHC-modulated bacterial N-transformation responses, i.e., inhibited nitrification and promoted heterotrophic denitrification, mainly contributed to reduced N2O emissions, whereas modification of soil properties (e.g., decreased pH, increased total C content) by SPC dominantly accounted for decreased N2O emissions. These results address new insights into microbial regulation of N2O emission reduction from the coastal salt-affected soils amended with hydrochar, and provide the promising strategies to enhance C sequestration and mitigate GHG emissions in the blue C ecosystems.
Collapse
Affiliation(s)
- Xiangwei You
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Xiao Wang
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Ruixue Sun
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Qiang Liu
- Institute of Coastal Environmental Pollution Control, College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Marine Environment and Ecology, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266100, China
| | - Song Fang
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Qingxian Kong
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Xin Zhang
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Chenghao Xie
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China
| | - Hao Zheng
- Institute of Coastal Environmental Pollution Control, College of Environmental Science and Engineering, Ministry of Education Key Laboratory of Marine Environment and Ecology, Frontiers Science Center for Deep Ocean Multispheres and Earth System, Ocean University of China, Qingdao 266100, China; Marine Ecology and Environmental Science Laboratory, Pilot National Laboratory for Marine Science and Technology, Qingdao 266071, China; Sanya Oceanographic Institution, Ocean University of China, Sanya 572000, China.
| | - Hui Li
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC 27695, USA
| | - Yiqiang Li
- Marine Agriculture Research Center, Tobacco Research Institute, Chinese Academy of Agricultural Sciences, Qingdao 266101, China.
| |
Collapse
|
8
|
Hallin S. Environmental microbiology going computational-Predictive ecology and unpredicted discoveries. Environ Microbiol 2023; 25:111-114. [PMID: 36181387 PMCID: PMC10092848 DOI: 10.1111/1462-2920.16232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Accepted: 09/28/2022] [Indexed: 01/21/2023]
Affiliation(s)
- Sara Hallin
- Swedish University of Agricultural Sciences, Department of Forest Mycology and Plant Pathology, Uppsala, Sweden
| |
Collapse
|
9
|
Zhang X, Qiu Y, Gilliam FS, Gillespie CJ, Tu C, Reberg-Horton SC, Hu S. Arbuscular Mycorrhizae Shift Community Composition of N-Cycling Microbes and Suppress Soil N 2O Emission. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:13461-13472. [PMID: 36041174 DOI: 10.1021/acs.est.2c03816] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Mycorrhizae are ubiquitous symbiotic associations between arbuscular mycorrhizal fungi (AMF) and terrestrial plants, in which AMF receive photosynthates from and acquire soil nutrients for their host plants. Plant uptake of soil nitrogen (N) reduces N substrate for microbial processes that generate nitrous oxide (N2O), a potent greenhouse gas. However, the underlying microbial mechanisms remain poorly understood, particularly in agroecosystems with high reactive N inputs. We examined how plant roots and AMF affect N2O emissions, N2O-producing (nirK and nirS) and N2O-consuming (nosZ) microbes under normal and high N inputs in conventional (CONV) and organically managed (OM) soils. Here, we show that high N input increased soil N2O emissions and the ratio of nirK to nirS microbes. Roots and AMF did not affect the (nirK + nirS)/nosZ ratio but significantly reduced N2O emissions and the nirK/nirS ratio. They reduced the nirK/nirS ratio by reducing nirK-Rhodobacterales but increasing nirS-Rhodocyclales in the CONV soil while decreasing nirK-Burkholderiales but increasing nirS-Rhizobiales in the OM soil. Our results indicate that plant roots and AMF reduced N2O emission directly by reducing soil N and indirectly through shifting the community composition of N2O-producing microbes in N-enriched agroecosystems, suggesting that harnessing the rhizosphere microbiome through agricultural management might offer additional potential for N2O emission mitigation.
Collapse
Affiliation(s)
- Xuelin Zhang
- College of Agronomy, Henan Agricultural University, State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450046, China
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Yunpeng Qiu
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Frank S Gilliam
- Department of Biology, University of West Florida, Pensacola, Florida 32514, United States
| | - Christopher J Gillespie
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Cong Tu
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, United States
- Department of Biological and Agricultural Engineering, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - S Chris Reberg-Horton
- Department of Crop and Soil Sciences, North Carolina State University, Raleigh, North Carolina 27695, United States
| | - Shuijin Hu
- Department of Entomology & Plant Pathology, North Carolina State University, Raleigh, North Carolina 27695, United States
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing 210095, China
| |
Collapse
|
10
|
Hallberg L, Hallin S, Bieroza M. Catchment controls of denitrification and nitrous oxide production rates in headwater remediated agricultural streams. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156513. [PMID: 35679930 DOI: 10.1016/j.scitotenv.2022.156513] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 06/01/2022] [Accepted: 06/02/2022] [Indexed: 06/15/2023]
Abstract
Heavily modified headwater streams and open ditches carry high nitrogen loads from agricultural soils that sustain eutrophication and poor water quality in downstream aquatic ecosystems. To remediate agricultural streams and reduce the export of nitrate (NO3-), phosphorus and suspended sediments, two-stage ditches with constructed floodplains can be implemented as countermeasures. By extending hydrological connectivity between the stream channel and riparian corridor within constructed floodplains, these remediated ditches enhance the removal of NO3- via the microbial denitrification process. Ten remediated ditches were paired with upstream trapezoidal ditches in Sweden across different soils and land uses to measure the capacity for denitrification and nitrous oxide (N2O) production and yields under denitrifying conditions in stream and floodplain sediments. To examine the controls for denitrification, water quality was monitored monthly and flow discharge continuously along reaches. Floodplain sediments accounted for 33 % of total denitrification capacity of remediated ditches, primarily controlled by inundation and stream NO3- concentrations. Despite reductions in flow-weighted NO3- concentrations along reaches, NO3- removal in remediated ditches via denitrification can be masked by inputs of NO3--rich groundwaters, typical of intensively managed agricultural landscapes. Although N2O production rates were 50 % lower in floodplains compared to the stream, remediated ditches emitted more N2O than conventional trapezoidal ditches. Higher denitrification rates and reductions of N2O proportions were predicted by catchments with loamy soils, higher proportions of agricultural land use and lower floodplain elevations. For realizing enhanced NO3- removal from floodplains and avoiding increased N2O emissions, soil type, land use and the design of floodplains need to be considered when implementing remediated streams. Further, we stress the need for assessing the impact of stream remediation in the context of broader catchment processes, to determine the overall potential for improving water quality.
Collapse
Affiliation(s)
- Lukas Hallberg
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, Sweden.
| | - Sara Hallin
- Department of Forest Mycology and Plant Pathology, Swedish University of Agricultural Sciences, Uppsala, Sweden
| | - Magdalena Bieroza
- Department of Soil and Environment, Swedish University of Agricultural Sciences, Uppsala, Sweden
| |
Collapse
|
11
|
Biogeographic Patterns and Elevational Differentiation of Sedimentary Bacterial Communities across River Systems in China. Appl Environ Microbiol 2022; 88:e0059722. [PMID: 35638840 DOI: 10.1128/aem.00597-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
Abstract
Bacterial biodiversity is tightly correlated with ecological functions of natural systems, and bacterial rare and abundant subcommunities make distinct contributions to ecosystem functioning. However, the biogeographic pattern and elevational differentiation of sedimentary bacterial diversity have rarely been studied in cross-river systems at a continental scale. This study analyzed the biogeographic patterns and elevational differentiations of the entire, abundant, and rare bacterial (sub)communities as well as the underlying mechanisms across nine rivers that span distinct geographic regions and large elevational gradients in China. We found that bacterial rare and abundant subcommunities shared similar biogeographic patterns and both demonstrated strong distance-decay relationships, despite their distinct community compositions. However, both null model and variation partitioning analysis results showed that while environmental selection governed rare subcommunity assemblies (contribution: 51.9%), dispersal limitation (62.7%) controlled the assembly of abundant subcommunities. The disparity was associated with the broader threshold width of abundant taxa to water temperature and pH variations than rare taxa. Elevation-induced bacterial composition variations were more evident than latitude-induced ones. Some specific operational taxonomic units (OTUs), representing 16.4% of the total sequences, much preferentially and even exclusively lived in high-elevation or low-elevation habitats and demonstrated some adaptations to local conditions. Greater positive: negative link ratios in bacterial co-occurrence networks of low elevations than high elevations (P < 0.05) partly resulted from their harboring higher organic carbon: nitrogen ratios. Together, this study draws a biogeographic picture of sedimentary bacterial communities in a continental-scale riverine system and highlights the importance of incorporating elevation-associated patterns of microbial diversity into riverine microbial ecology studies. IMPORTANCE Bacterial diversity is tightly correlated with the nutrient cycling of river systems. However, previous studies on bacterial diversity are mainly constrained to one single river system, although microbial biogeography and its drivers exhibit strong spatial scale dependence. Moreover, elevational differentiations of bacterial communities across river systems have also rarely been studied. Bacterial rare and abundant subcommunities make distinct contributions to ecosystem functioning, and they share similar biogeographic patterns in some environments but not in others. Therefore, we explored the biogeography of the entire, abundant, and rare (sub)communities in nine rivers that cover a wide space range and large elevational gradient in China. Our results revealed that bacterial rare and abundant subcommunities shared similar biogeographic patterns but their assembly mechanisms were much different in these rivers. Moreover, bacterial communities showed evident differentiations between high elevations and low elevations. These findings will facilitate a better understanding of bacterial diversity features in river systems.
Collapse
|