1
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Peng R, Chen X, Xu F, Hailstone R, Men Y, Du K. Pneumatic nano-sieve for CRISPR-based detection of drug-resistant bacteria. NANOSCALE HORIZONS 2023; 8:1677-1685. [PMID: 37877474 PMCID: PMC11162761 DOI: 10.1039/d3nh00365e] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/26/2023]
Abstract
The increasing prevalence of antibiotic-resistant bacterial infections, particularly methicillin-resistant Staphylococcus aureus (MRSA), presents a significant public health concern. Timely detection of MRSA is crucial to enable prompt medical intervention, limit its spread, and reduce antimicrobial resistance. Here, we introduce a miniaturized nano-sieve device featuring a pneumatically-regulated chamber for highly efficient MRSA purification from human plasma samples. By using packed magnetic beads as a filter and leveraging the deformability of the nano-sieve channel, we achieved an on-chip concentration factor of ∼15-fold for MRSA. We integrated this device with recombinase polymerase amplification (RPA) and clustered regularly interspaced short palindromic repeats (CRISPR)-Cas detection system, resulting in an on-chip limit of detection (LOD) of approximately 100 CFU mL-1. This developed approach provides a rapid, precise, and centrifuge-free solution suitable for point-of-care diagnostics, with the potential to significantly improve patient outcomes in resource-limited medical conditions.
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Affiliation(s)
- Ruonan Peng
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA.
| | - Xinye Chen
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA.
- Department of Microsystems Engineering, Rochester Institute of Technology, 1 Lomb Memorial Dr, Rochester, NY 14623, USA
| | - Fengjun Xu
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA.
| | - Richard Hailstone
- Center for Imaging Science, Rochester Institute of Technology, 1 Lomb Memorial Dr, Rochester, NY 14623, USA
| | - Yujie Men
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA.
| | - Ke Du
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA.
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2
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Mahmud S, Ramproshad S, Deb R, Dutta D. A review of the zone broadening contributions in free-flow electrophoresis. Electrophoresis 2023; 44:1519-1538. [PMID: 37548630 DOI: 10.1002/elps.202300062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 06/20/2023] [Accepted: 07/18/2023] [Indexed: 08/08/2023]
Abstract
The broadening of analyte streams, as they migrate through a free-flow electrophoresis (FFE) channel, often limits the resolving power of FFE separations. Under laminar flow conditions, such zonal spreading occurs due to analyte diffusion perpendicular to the direction of streamflow and variations in the lateral distance electrokinetically migrated by the analyte molecules. Although some of the factors that give rise to these contributions are inherent to the FFE method, others originate from non-idealities in the system, such as Joule heating, pressure-driven crossflows, and a difference between the electrical conductivities of the sample stream and background electrolyte. The injection process can further increase the stream width in FFE separations but normally influencing all analyte zones to an equal extent. Recently, several experimental and theoretical works have been reported that thoroughly investigate the various contributions to stream variance in an FFE device for better understanding, and potentially minimizing their magnitudes. In this review article, we carefully examine the findings from these studies and discuss areas in which more work is needed to advance our comprehension of the zone broadening contributions in FFE assays.
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Affiliation(s)
- Sakur Mahmud
- Department of Chemistry, University of Wyoming, Laramie, Wyoming, USA
| | - Sarker Ramproshad
- Department of Chemistry, University of Wyoming, Laramie, Wyoming, USA
| | - Rajesh Deb
- Department of Chemistry, University of Wyoming, Laramie, Wyoming, USA
| | - Debashis Dutta
- Department of Chemistry, University of Wyoming, Laramie, Wyoming, USA
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3
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LeMon MB, Douma CC, Burke GS, Bowser MT. Fabrication of µFFE Devices in COC via Hot Embossing with a 3D-Printed Master Mold. MICROMACHINES 2023; 14:1728. [PMID: 37763891 PMCID: PMC10534651 DOI: 10.3390/mi14091728] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2023] [Revised: 08/19/2023] [Accepted: 08/25/2023] [Indexed: 09/29/2023]
Abstract
The fabrication of high-performance microscale devices in substrates with optimal material properties while keeping costs low and maintaining the flexibility to rapidly prototype new designs remains an ongoing challenge in the microfluidics field. To this end, we have fabricated a micro free-flow electrophoresis (µFFE) device in cyclic olefin copolymer (COC) via hot embossing using a PolyJet 3D-printed master mold. A room-temperature cyclohexane vapor bath was used to clarify the device and facilitate solvent-assisted thermal bonding to fully enclose the channels. Device profiling showed 55 µm deep channels with no detectable feature degradation due to solvent exposure. Baseline separation of fluorescein, rhodamine 110, and rhodamine 123, was achieved at 150 V. Limits of detection for these fluorophores were 2 nM, 1 nM, and 10 nM, respectively, and were comparable to previously reported values for glass and 3D-printed devices. Using PolyJet 3D printing in conjunction with hot embossing, the full design cycle, from initial design to production of fully functional COC µFFE devices, could be completed in as little as 6 days without the need for specialized clean room facilities. Replicate COC µFFE devices could be produced from an existing embossing mold in as little as two hours.
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Affiliation(s)
| | | | | | - Michael T. Bowser
- Department of Chemistry, University of Minnesota, Minneapolis, MN 55455, USA
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4
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Peng R, Chen X, Xu F, Hailstone R, Men Y, Du K. Pneumatic Nano-Sieve for CRISPR-based Detection of Drug-resistant Bacteria. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.08.17.553737. [PMID: 37645720 PMCID: PMC10462146 DOI: 10.1101/2023.08.17.553737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/31/2023]
Abstract
The increasing prevalence of antibiotic-resistant bacterial infections, particularly methicillin-resistant Staphylococcus aureus (MRSA), presents a significant public health concern. Timely detection of MRSA is crucial to enable prompt medical intervention, limit its spread, and reduce antimicrobial resistance. Here, we introduce a miniaturized nano-sieve device featuring a pneumatically-regulated chamber for highly efficient MRSA purification from human plasma samples. By using packed magnetic beads as a filter and leveraging the deformability of the nano-sieve channel, we achieve an on-chip concentration factor of 15 for MRSA. We integrated this device with recombinase polymerase amplification (RPA) and clustered regularly interspaced short palindromic repeats (CRISPR)-Cas detection system, resulting in an on-chip limit of detection (LOD) of approximately 100 CFU/mL. This developed approach provides a rapid, precise, and centrifuge-free solution suitable for point-of-care diagnostics, with the potential to significantly improve patient outcomes in resource-limited medical conditions.
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Affiliation(s)
- Ruonan Peng
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA
| | - Xinye Chen
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA
- Department of Microsystems Engineering, Rochester Institute of Technology, 1 Lomb Memorial Dr, Rochester, NY 14623, USA
| | - Fengjun Xu
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA
| | - Richard Hailstone
- Center for Imaging Science, Rochester Institute of Technology, 1 Lomb Memorial Dr, Rochester, NY 14623, USA
| | - Yujie Men
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA
| | - Ke Du
- Department of Chemical and Environmental Engineering, University of California, Riverside, 900 University Ave, Riverside, CA 92507, USA
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5
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Elkalla E, Khizar S, Tarhini M, Lebaz N, Zine N, Jaffrezic-Renault N, Errachid A, Elaissari A. Core-shell micro/nanocapsules: from encapsulation to applications. J Microencapsul 2023; 40:125-156. [PMID: 36749629 DOI: 10.1080/02652048.2023.2178538] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Encapsulation is the way to wrap or coat one substance as a core inside another tiny substance known as a shell at micro and nano scale for protecting the active ingredients from the exterior environment. A lot of active substances, such as flavours, enzymes, drugs, pesticides, vitamins, in addition to catalysts being effectively encapsulated within capsules consisting of different natural as well as synthetic polymers comprising poly(methacrylate), poly(ethylene glycol), cellulose, poly(lactide), poly(styrene), gelatine, poly(lactide-co-glycolide)s, and acacia. The developed capsules release the enclosed substance conveniently and in time through numerous mechanisms, reliant on the ultimate use of final products. Such technology is important for several fields counting food, pharmaceutical, cosmetics, agriculture, and textile industries. The present review focuses on the most important and high-efficiency methods for manufacturing micro/nanocapsules and their several applications in our life.
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Affiliation(s)
- Eslam Elkalla
- Univ Lyon, University Claude Bernard Lyon-1, CNRS, ISA-UMR 5280, Lyon, France
| | - Sumera Khizar
- Univ Lyon, University Claude Bernard Lyon-1, CNRS, ISA-UMR 5280, Lyon, France
| | - Mohamad Tarhini
- Univ Lyon, University Claude Bernard Lyon-1, CNRS, ISA-UMR 5280, Lyon, France
| | - Noureddine Lebaz
- Univ Lyon, University Claude Bernard Lyon-1, CNRS, LAGEPP UMR-5007, Villeurbanne, France
| | - Nadia Zine
- Univ Lyon, University Claude Bernard Lyon-1, CNRS, ISA-UMR 5280, Lyon, France
| | | | - Abdelhamid Errachid
- Univ Lyon, University Claude Bernard Lyon-1, CNRS, ISA-UMR 5280, Lyon, France
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6
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Prospective analytical role of sensors for environmental screening and monitoring. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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7
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Couceiro P, Alonso-Chamarro J. Fluorescence Imaging Characterization of the Separation Process in a Monolithic Microfluidic Free-Flow Electrophoresis Device Fabricated Using Low-Temperature Co-Fired Ceramics. MICROMACHINES 2022; 13:mi13071023. [PMID: 35888840 PMCID: PMC9324176 DOI: 10.3390/mi13071023] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 06/22/2022] [Accepted: 06/24/2022] [Indexed: 11/26/2022]
Abstract
A monolithic microfluidic free-flow electrophoresis device, fabricated using low-temperature co-fired ceramic technology, is presented. The device integrates gold electrodes and a 20 µm thick transparent ceramic optical window, suitable for fluorescence imaging, into a multilevel microfluidic chamber design. The microfluidic chamber consists of a 60 µm deep separation chamber and two, 50 µm deep electrode chambers separated by 10 µm deep side channel arrays. Fluorescence imaging was used for in-chip, spatial-temporal characterization of local pH variations in separation conditions as well as to characterize the separation process. The device allowed baseline resolution separation of a sample mixture of Fluorescein, Rhodamine 6G, and 4-Methylumbelliferone at pH 7.0, in only 6 s, using 378 V.s/cm. The results demonstrate the possibility of studying a chemical process using fluorescence imaging within the traditional fields of low-temperature co-fired ceramics technology, such as high-electrical-field applications, while using a simple fabrication procedure suitable for low-cost mass production.
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8
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Ezenarro JJ, Mas J, Muñoz-Berbel X, Uria N. Advances in bacterial concentration methods and their integration in portable detection platforms: A review. Anal Chim Acta 2022; 1209:339079. [PMID: 35569858 DOI: 10.1016/j.aca.2021.339079] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2021] [Revised: 09/15/2021] [Accepted: 09/16/2021] [Indexed: 11/18/2022]
Abstract
Early detection and identification of microbial contaminants is crucial in many sectors, including clinical diagnostics, food quality control and environmental monitoring. Biosensors have recently gained attention among other bacterial detection technologies due to their simplicity, rapid response, selectivity, and integration/miniaturization potential in portable microfluidic platforms. However, biosensors are limited to the analysis of small sample volumes, and pre-concentration steps are necessary to reach the low sensitivity levels of few bacteria per mL required in the analysis of real clinical, industrial or environmental samples. Many platforms already exist where bacterial detection and separation/accumulation systems are integrated in a single platform, but they have not been compiled and critically analysed. This review reports on most recent advances in bacterial concentration/detection platforms with emphasis on the concentration strategy. Systems based on five concentration strategies, i.e. centrifugation, filtration, magnetic separation, electric separation or acoustophoresis, are here presented and compared in terms of processed sample volume, concentration efficiency, concentration time, ability to work with different types of samples, and integration potential, among others. The critical evaluation presented in the review is envision to facilitate the development of future platforms for fast, sensitive and in situ bacterial detection in real sample.
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Affiliation(s)
- Josune J Ezenarro
- Departament de Genètica I de Microbiologia, Universitat Autònoma de Barcelona, 08193, Cerdanyola Del Vallès, Spain; Waterologies S.L, C/ Dinamarca, 3 (nave 9), Polígono Industrial Les Comes, 08700, Igualada, Spain; Institut de Microelectrònica de Barcelona, IMB-CNM-CSIC, Campus UAB, 08193, Bellaterra, Spain.
| | - Jordi Mas
- Departament de Genètica I de Microbiologia, Universitat Autònoma de Barcelona, 08193, Cerdanyola Del Vallès, Spain
| | - Xavier Muñoz-Berbel
- Institut de Microelectrònica de Barcelona, IMB-CNM-CSIC, Campus UAB, 08193, Bellaterra, Spain
| | - Naroa Uria
- Institut de Microelectrònica de Barcelona, IMB-CNM-CSIC, Campus UAB, 08193, Bellaterra, Spain; Arkyne Tehcnologies S.L (Bioo), Carrer de La Tecnologia, 17, 08840, Viladecans, Spain.
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9
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Zhang A, Xu J, Li X, Lin Z, Song Y, Li X, Wang Z, Cheng Y. High-Throughput Continuous-Flow Separation in a Micro Free-Flow Electrophoresis Glass Chip Based on Laser Microfabrication. SENSORS (BASEL, SWITZERLAND) 2022; 22:1124. [PMID: 35161869 PMCID: PMC8838507 DOI: 10.3390/s22031124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2021] [Revised: 01/20/2022] [Accepted: 01/28/2022] [Indexed: 06/14/2023]
Abstract
Micro free-flow electrophoresis (μFFE) provides a rapid and straightforward route for the high-performance online separation and purification of targeted liquid samples in a mild manner. However, the facile fabrication of a μFFE device with high throughput and high stability remains a challenge due to the technical barriers of electrode integration and structural design for the removal of bubbles for conventional methods. To address this, the design and fabrication of a high-throughput μFFE chip are proposed using laser-assisted chemical etching of glass followed by electrode integration and subsequent low-temperature bonding. The careful design of the height ratio of the separation chamber and electrode channels combined with a high flow rate of buffer solution allows the efficient removal of electrolysis-generated bubbles along the deep electrode channels during continuous-flow separation. The introduction of microchannel arrays further enhances the stability of on-chip high-throughput separation. As a proof-of-concept, high-performance purification of fluorescein sodium solution with a separation purity of ~97.9% at a voltage of 250 V from the mixture sample solution of fluorescein sodium and rhodamine 6G solution is demonstrated.
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Affiliation(s)
- Aodong Zhang
- Engineering Research Center for Nanophotonics and Advanced Instrument, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (A.Z.); (Z.W.); (Y.C.)
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Jian Xu
- Engineering Research Center for Nanophotonics and Advanced Instrument, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (A.Z.); (Z.W.); (Y.C.)
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Xiaolong Li
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Zijie Lin
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Yunpeng Song
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Xin Li
- Engineering Research Center for Nanophotonics and Advanced Instrument, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (A.Z.); (Z.W.); (Y.C.)
| | - Zhenhua Wang
- Engineering Research Center for Nanophotonics and Advanced Instrument, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (A.Z.); (Z.W.); (Y.C.)
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
| | - Ya Cheng
- Engineering Research Center for Nanophotonics and Advanced Instrument, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (A.Z.); (Z.W.); (Y.C.)
- State Key Laboratory of Precision Spectroscopy, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China; (X.L.); (Z.L.); (Y.S.)
- XXL—The Extreme Optoelectromechanics Laboratory, School of Physics and Electronic Science, East China Normal University, Shanghai 200241, China
- State Key Laboratory of High Field Laser Physics, Shanghai Institute of Optics and Fine Mechanics, Chinese Academy of Sciences, Shanghai 201800, China
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10
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Preuss JA, Nguyen GN, Berk V, Bahnemann J. Miniaturized free-flow electrophoresis: production, optimization, and application using 3D printing technology. Electrophoresis 2020; 42:305-314. [PMID: 33128392 DOI: 10.1002/elps.202000149] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Revised: 10/22/2020] [Accepted: 10/25/2020] [Indexed: 12/11/2022]
Abstract
The increasing resolution of three-dimensional (3D) printing offers simplified access to, and development of, microfluidic devices with complex 3D structures. Therefore, this technology is increasingly used for rapid prototyping in laboratories and industry. Microfluidic free flow electrophoresis (μFFE) is a versatile tool to separate and concentrate different samples (such as DNA, proteins, and cells) to different outlets in a time range measured in mere tens of seconds and offers great potential for use in downstream processing, for example. However, the production of μFFE devices is usually rather elaborate. Many designs are based on chemical pretreatment or manual alignment for the setup. Especially for the separation chamber of a μFFE device, this is a crucial step which should be automatized. We have developed a smart 3D design of a μFFE to pave the way for a simpler production. This study presents (1) a robust and reproducible way to build up critical parts of a μFFE device based on high-resolution MultiJet 3D printing; (2) a simplified insertion of commercial polycarbonate membranes to segregate separation and electrode chambers; and (3) integrated, 3D-printed wells that enable a defined sample fractionation (chip-to-world interface). In proof of concept experiments both a mixture of fluorescence dyes and a mixture of amino acids were successfully separated in our 3D-printed μFFE device.
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Affiliation(s)
- John-Alexander Preuss
- Institute of Technical Chemistry, Leibniz University Hannover, Callinstraße 5, Hannover, 30167, Germany
| | - Gia Nam Nguyen
- Institute of Technical Chemistry, Leibniz University Hannover, Callinstraße 5, Hannover, 30167, Germany
| | - Virginia Berk
- Institute of Technical Chemistry, Leibniz University Hannover, Callinstraße 5, Hannover, 30167, Germany
| | - Janina Bahnemann
- Institute of Technical Chemistry, Leibniz University Hannover, Callinstraße 5, Hannover, 30167, Germany
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11
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Dincer C, Bruch R, Costa-Rama E, Fernández-Abedul MT, Merkoçi A, Manz A, Urban GA, Güder F. Disposable Sensors in Diagnostics, Food, and Environmental Monitoring. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2019; 31:e1806739. [PMID: 31094032 DOI: 10.1002/adma.201806739] [Citation(s) in RCA: 265] [Impact Index Per Article: 53.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2018] [Revised: 03/29/2019] [Indexed: 05/18/2023]
Abstract
Disposable sensors are low-cost and easy-to-use sensing devices intended for short-term or rapid single-point measurements. The growing demand for fast, accessible, and reliable information in a vastly connected world makes disposable sensors increasingly important. The areas of application for such devices are numerous, ranging from pharmaceutical, agricultural, environmental, forensic, and food sciences to wearables and clinical diagnostics, especially in resource-limited settings. The capabilities of disposable sensors can extend beyond measuring traditional physical quantities (for example, temperature or pressure); they can provide critical chemical and biological information (chemo- and biosensors) that can be digitized and made available to users and centralized/decentralized facilities for data storage, remotely. These features could pave the way for new classes of low-cost systems for health, food, and environmental monitoring that can democratize sensing across the globe. Here, a brief insight into the materials and basics of sensors (methods of transduction, molecular recognition, and amplification) is provided followed by a comprehensive and critical overview of the disposable sensors currently used for medical diagnostics, food, and environmental analysis. Finally, views on how the field of disposable sensing devices will continue its evolution are discussed, including the future trends, challenges, and opportunities.
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Affiliation(s)
- Can Dincer
- Department of Bioengineering, Imperial College London, Royal School of Mines, SW7 2AZ, London, UK
- University of Freiburg, Freiburg Center for Interactive Materials and Bioinspired Technologies (FIT), 79110, Freiburg, Germany
- Laboratory for Sensors, Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
| | - Richard Bruch
- University of Freiburg, Freiburg Center for Interactive Materials and Bioinspired Technologies (FIT), 79110, Freiburg, Germany
- Laboratory for Sensors, Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
| | - Estefanía Costa-Rama
- REQUIMTE/LAQV, Instituto Superior de Engenharia do Porto, 4249-015, Porto, Portugal
- Departamento de Química Física y Analítica, Universidad de Oviedo, 33006, Oviedo, Spain
| | | | - Arben Merkoçi
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and The Barcelona Institute of Science and Technology, 08193, Barcelona, Spain
- ICREA, 08010, Barcelona, Spain
| | - Andreas Manz
- Korea Institute of Science and Technology in Europe, 66123, Saarbrücken, Germany
| | - Gerald Anton Urban
- Laboratory for Sensors, Department of Microsystems Engineering (IMTEK), University of Freiburg, 79110, Freiburg, Germany
- University of Freiburg, Freiburg Materials Research Center (FMF), 79104, Freiburg, Germany
| | - Firat Güder
- Department of Bioengineering, Imperial College London, Royal School of Mines, SW7 2AZ, London, UK
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12
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Rudisch BM, Pfeiffer SA, Geissler D, Speckmeier E, Robitzki AA, Zeitler K, Belder D. Nonaqueous Micro Free-Flow Electrophoresis for Continuous Separation of Reaction Mixtures in Organic Media. Anal Chem 2019; 91:6689-6694. [DOI: 10.1021/acs.analchem.9b00714] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Benjamin M. Rudisch
- Institute of Analytical Chemistry, Leipzig University, Johannisallee 29, Leipzig 04103, Germany
| | - Simon A. Pfeiffer
- Institute of Analytical Chemistry, Leipzig University, Johannisallee 29, Leipzig 04103, Germany
| | - David Geissler
- Institute of Analytical Chemistry, Leipzig University, Johannisallee 29, Leipzig 04103, Germany
| | - Elisabeth Speckmeier
- Institute of Organic Chemistry, Leipzig University, Johannisallee 29, Leipzig 04103, Germany
| | - Andrea A. Robitzki
- Center for Biotechnology and Biomedicine, Leipzig University, Deutscher Platz 5, Leipzig 04103, Germany
| | - Kirsten Zeitler
- Institute of Organic Chemistry, Leipzig University, Johannisallee 29, Leipzig 04103, Germany
| | - Detlev Belder
- Institute of Analytical Chemistry, Leipzig University, Johannisallee 29, Leipzig 04103, Germany
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13
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Microfluidics-Based Organism Isolation from Whole Blood: An Emerging Tool for Bloodstream Infection Diagnosis. Ann Biomed Eng 2019; 47:1657-1674. [PMID: 30980291 DOI: 10.1007/s10439-019-02256-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2019] [Accepted: 03/27/2019] [Indexed: 12/11/2022]
Abstract
The diagnosis of bloodstream infections presents numerous challenges, in part, due to the low concentration of pathogens present in the peripheral bloodstream. As an alternative to existing time-consuming, culture-based diagnostic methods for organism identification, microfluidic devices have emerged as rapid, high-throughput and integrated platforms for bacterial and fungal enrichment, detection, and characterization. This focused review serves to highlight and compare the emerging microfluidic platforms designed for the isolation of sepsis-causing pathogens from blood and suggest important areas for future research.
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14
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Chen X, Zhang S, Zhang L, Yao Z, Chen X, Zheng Y, Liu Y. Applications and theory of electrokinetic enrichment in micro-nanofluidic chips. Biomed Microdevices 2018; 19:19. [PMID: 28364179 DOI: 10.1007/s10544-017-0168-1] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
This review reports the progress on the recent development of electrokinetic enrichment in micro-nanofluidic chips. The governing equations of electrokinetic enrichment in micro-nanofluidic chips are given. Various enrichment applications including protein analysis, DNA analysis, bacteria analysis, viruses analysis and cell analysis are illustrated and discussed. The advantages and difficulties of each enrichment method are expatiated. This paper will provide a particularly convenient and valuable reference to those who intend to research the electrokinetic enrichment based on micro-nanofluidic chips.
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Affiliation(s)
- Xueye Chen
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China.
| | - Shuai Zhang
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China
| | - Lei Zhang
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China
| | - Zhen Yao
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China
| | - Xiaodong Chen
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China
| | - Yue Zheng
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China
| | - Yanlin Liu
- Faculty of Mechanical Engineering and Automation, Liaoning University of Technology, Jinzhou, 121001, China
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15
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Hügle M, Dame G, Behrmann O, Rietzel R, Karthe D, Hufert FT, Urban GA. A lab-on-a-chip for preconcentration of bacteria and nucleic acid extraction. RSC Adv 2018; 8:20124-20130. [PMID: 35541671 PMCID: PMC9080779 DOI: 10.1039/c8ra02177e] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2018] [Revised: 07/27/2018] [Accepted: 05/22/2018] [Indexed: 11/21/2022] Open
Abstract
To improve detection sensitivity, molecular diagnostics require preconcentration of low concentrated samples followed by rapid nucleic acid extraction. This is usually achieved by multiple centrifugation, lysis and purification steps, for instance, using chemical reagents, spin columns or magnetic beads. These require extensive infrastructure as well as time consuming manual handling steps and are thus not suitable for point of care testing (POCT). To overcome these challenges, we developed a microfluidic chip combining free-flow electrophoretic (FFE) preconcentration (1 ml down to 5 μl) and thermoelectric lysis of bacteria as well as purification of nucleic acids by gel-electrophoresis. The integration of these techniques in a single chip is unique and enables fast, easy and space-saving sample pretreatment without the need for laboratory facilities, making it ideal for the integration into small POCT devices. A preconcentration efficiency of nearly 100% and a lysis/gel-electrophoresis efficiency of about 65% were achieved for the detection of E. coli. The genetic material was analyzed by RT-qPCR targeting the superfolder Green Fluorescent Protein (sfGFP) transcripts to quantify mRNA recovery and qPCR to determine DNA background. A lab-on-a-chip combining free-flow electrophoretic preconcentration and thermoelectric lysis of bacteria as well as purification of nucleic acids by gel-electrophoresis.![]()
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Affiliation(s)
- M. Hügle
- Laboratory for Sensors
- Department of Microsystems Engineering (IMTEK)
- University of Freiburg
- Freiburg
- Germany
| | - G. Dame
- Institute of Microbiology and Virology
- Brandenburg Medical School Theodor Fontane
- Neuruppin
- Germany
| | - O. Behrmann
- Laboratory for Sensors
- Department of Microsystems Engineering (IMTEK)
- University of Freiburg
- Freiburg
- Germany
| | - R. Rietzel
- Laboratory for Sensors
- Department of Microsystems Engineering (IMTEK)
- University of Freiburg
- Freiburg
- Germany
| | - D. Karthe
- German-Mongolian Institute of Resources and Technology
- Mongolia
| | - F. T. Hufert
- Institute of Microbiology and Virology
- Brandenburg Medical School Theodor Fontane
- Neuruppin
- Germany
| | - G. A. Urban
- Laboratory for Sensors
- Department of Microsystems Engineering (IMTEK)
- University of Freiburg
- Freiburg
- Germany
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16
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Abstract
Micro free-flow electrophoresis (μFFE) is a continuous separation technique in which analytes are streamed through a perpendicularly applied electric field in a planar separation channel. Analyte streams are deflected laterally based on their electrophoretic mobilities as they flow through the separation channel. A number of μFFE separation modes have been demonstrated, including free zone (FZ), micellar electrokinetic chromatography (MEKC), isoelectric focusing (IEF) and isotachophoresis (ITP). Approximately 60 articles have been published since the first μFFE device was fabricated in 1994. We anticipate that recent advances in device design, detection, and fabrication, will allow μFFE to be applied to a much wider range of applications. Applications particularly well suited for μFFE analysis include continuous, real time monitoring and microscale purifications.
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Affiliation(s)
- Alexander C Johnson
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, MN 55455, USA.
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17
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Horká M, Šlais K, Šalplachta J, Růžička F. Preparative isoelectric focusing of microorganisms in cellulose-based separation medium and subsequent analysis by CIEF and MALDI-TOF MS. Anal Chim Acta 2017; 990:185-193. [DOI: 10.1016/j.aca.2017.08.046] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Revised: 08/28/2017] [Accepted: 08/29/2017] [Indexed: 02/01/2023]
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18
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Pereiro I, Bendali A, Tabnaoui S, Alexandre L, Srbova J, Bilkova Z, Deegan S, Joshi L, Viovy JL, Malaquin L, Dupuy B, Descroix S. A new microfluidic approach for the one-step capture, amplification and label-free quantification of bacteria from raw samples. Chem Sci 2017; 8:1329-1336. [PMID: 28626552 PMCID: PMC5465951 DOI: 10.1039/c6sc03880h] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Accepted: 10/09/2016] [Indexed: 12/02/2022] Open
Abstract
A microfluidic method to specifically capture and detect infectious bacteria based on immunorecognition and proliferative power is presented. It involves a microscale fluidized bed in which magnetic and drag forces are balanced to retain antibody-functionalized superparamagnetic beads in a chamber during sample perfusion. Captured cells are then cultivated in situ by infusing nutritionally-rich medium. The system was validated by the direct one-step detection of Salmonella Typhimurium in undiluted unskimmed milk, without pre-treatment. The growth of bacteria induces an expansion of the fluidized bed, mainly due to the volume occupied by the newly formed bacteria. This expansion can be observed with the naked eye, providing simple low-cost detection of only a few bacteria and in a few hours. The time to expansion can also be measured with a low-cost camera, allowing quantitative detection down to 4 cfu (colony forming unit), with a dynamic range of 100 to 107 cfu ml-1 in 2 to 8 hours, depending on the initial concentration. This mode of operation is an equivalent of quantitative PCR, with which it shares a high dynamic range and outstanding sensitivity and specificity, operating at the live cell rather than DNA level. Specificity was demonstrated by controls performed in the presence of a 500× excess of non-pathogenic Lactococcus lactis. The system's versatility was demonstrated by its successful application to the detection and quantitation of Escherichia coli O157:H15 and Enterobacter cloacae. This new technology allows fast, low-cost, portable and automated bacteria detection for various applications in food, environment, security and clinics.
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Affiliation(s)
- Iago Pereiro
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
- Institut Pierre-Gilles de Gennes , 75005 Paris , France
| | - Amel Bendali
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
- Institut Pierre-Gilles de Gennes , 75005 Paris , France
| | - Sanae Tabnaoui
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
| | - Lucile Alexandre
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
- Institut Pierre-Gilles de Gennes , 75005 Paris , France
| | - Jana Srbova
- Dept. of Biological and Biochemical Sciences , Faculty of Chemical Technology , University of Pardubice , 53210 Pardubice , Czech Republic
| | - Zuzana Bilkova
- Dept. of Biological and Biochemical Sciences , Faculty of Chemical Technology , University of Pardubice , 53210 Pardubice , Czech Republic
| | - Shane Deegan
- Aquila Bioscience Limited , Business Innovation Centre , National University of Ireland Galway , Galway , Ireland
| | - Lokesh Joshi
- Glycoscience Group , National Centre for Biomedical Engineering Science , National University of Ireland Galway , Galway , Ireland
| | - Jean-Louis Viovy
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
- Institut Pierre-Gilles de Gennes , 75005 Paris , France
| | - Laurent Malaquin
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
- Institut Pierre-Gilles de Gennes , 75005 Paris , France
| | - Bruno Dupuy
- Laboratory Pathogenesis of Bacterial Anaerobes , Dept. Microbiology , Institut Pasteur , 75724 Paris , France .
| | - Stéphanie Descroix
- Laboratoire Physico Chimie Curie , Institut Curie , PSL Research University , CNRS UMR168 , 75005 Paris , France .
- Sorbonne Universités , UPMC Univ Paris 06 , 75005 Paris , France
- Institut Pierre-Gilles de Gennes , 75005 Paris , France
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19
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Islam M, Natu R, Larraga-Martinez MF, Martinez-Duarte R. Enrichment of diluted cell populations from large sample volumes using 3D carbon-electrode dielectrophoresis. BIOMICROFLUIDICS 2016; 10:033107. [PMID: 27375816 PMCID: PMC4912558 DOI: 10.1063/1.4954310] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Accepted: 06/08/2016] [Indexed: 05/12/2023]
Abstract
Here, we report on an enrichment protocol using carbon electrode dielectrophoresis to isolate and purify a targeted cell population from sample volumes up to 4 ml. We aim at trapping, washing, and recovering an enriched cell fraction that will facilitate downstream analysis. We used an increasingly diluted sample of yeast, 10(6)-10(2) cells/ml, to demonstrate the isolation and enrichment of few cells at increasing flow rates. A maximum average enrichment of 154.2 ± 23.7 times was achieved when the sample flow rate was 10 μl/min and yeast cells were suspended in low electrically conductive media that maximizes dielectrophoresis trapping. A COMSOL Multiphysics model allowed for the comparison between experimental and simulation results. Discussion is conducted on the discrepancies between such results and how the model can be further improved.
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Affiliation(s)
- Monsur Islam
- Mechanical Engineering Department, Clemson University , Clemson, South Carolina 29631, USA
| | - Rucha Natu
- Mechanical Engineering Department, Clemson University , Clemson, South Carolina 29631, USA
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20
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Herzog C, Poehler E, Peretzki AJ, Borisov SM, Aigner D, Mayr T, Nagl S. Continuous on-chip fluorescence labelling, free-flow isoelectric focusing and marker-free isoelectric point determination of proteins and peptides. LAB ON A CHIP 2016; 16:1565-1572. [PMID: 27064144 DOI: 10.1039/c6lc00055j] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
We present a microfluidic platform that contains a micro flow reactor for on-chip biomolecule labelling that is directly followed by a separation bed for continuous free-flow electrophoresis and has an integrated hydrogel-based near-infrared fluorescent pH sensor layer. Using this assembly, labelling of protein and peptide mixtures, their separation via free-flow isoelectric focusing and the determination of the isoelectric point (pI) of the separated products via the integrated sensor layer could be carried out within typically around 5 minutes. Spatially-resolved immobilization of fluidic and sensing structures was carried out via multistep photolithography. The assembly was characterized and optimized with respect to their fluidic and pH sensing properties and applied in the IEF of model proteins, peptides and a tryptic digest from physalaemine. We have therefore realized continuous sample preparation and preparative separation, analyte detection, process observation and analyte assignment capability based on pI on a single platform the size of a microscope slide.
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Affiliation(s)
- Christin Herzog
- Institut für Analytische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany.
| | - Elisabeth Poehler
- Institut für Analytische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany.
| | - Andrea J Peretzki
- Institut für Analytische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany.
| | - Sergey M Borisov
- Institut für Analytische Chemie und Lebensmittelchemie, Technische Universität Graz, Stremayrgasse 9/III, 8010 Graz, Austria
| | - Daniel Aigner
- Institut für Analytische Chemie und Lebensmittelchemie, Technische Universität Graz, Stremayrgasse 9/III, 8010 Graz, Austria
| | - Torsten Mayr
- Institut für Analytische Chemie und Lebensmittelchemie, Technische Universität Graz, Stremayrgasse 9/III, 8010 Graz, Austria
| | - Stefan Nagl
- Institut für Analytische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany.
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21
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Continuous particle separation using pressure-driven flow-induced miniaturizing free-flow electrophoresis (PDF-induced μ-FFE). Sci Rep 2016; 6:19911. [PMID: 26819221 PMCID: PMC4730231 DOI: 10.1038/srep19911] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2015] [Accepted: 12/21/2015] [Indexed: 12/24/2022] Open
Abstract
In this paper, we introduce pressure-driven flow-induced miniaturizing free-flow electrophoresis (PDF-induced μ-FFE), a novel continuous separation method. In our separation system, the external flow and electric field are applied to particles, such that particle movement is affected by pressure-driven flow, electroosmosis, and electrophoresis. We then analyzed the hydrodynamic drag force and electrophoretic force applied to the particles in opposite directions. Based on this analysis, micro- and nano-sized particles were separated according to their electrophoretic mobilities with high separation efficiency. Because the separation can be achieved in a simple T-shaped microchannel, without the use of internal electrodes, it offers the advantages of low-cost, simple device fabrication and bubble-free operation, compared with conventional μ-FFE methods. Therefore, we expect the proposed separation method to have a wide range of filtering/separation applications in biochemical analysis.
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22
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Kim M, Jung T, Kim Y, Lee C, Woo K, Seol JH, Yang S. A microfluidic device for label-free detection of Escherichia coli in drinking water using positive dielectrophoretic focusing, capturing, and impedance measurement. Biosens Bioelectron 2015; 74:1011-5. [DOI: 10.1016/j.bios.2015.07.059] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2015] [Revised: 07/03/2015] [Accepted: 07/25/2015] [Indexed: 11/29/2022]
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23
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Gumuscu B, Bomer JG, van den Berg A, Eijkel JCT. Large scale patterning of hydrogel microarrays using capillary pinning. LAB ON A CHIP 2015; 15:664-7. [PMID: 25512130 DOI: 10.1039/c4lc01350f] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Capillary barriers provide a simple and elegant means for autonomous fluid-flow control in microfluidic systems. In this work, we report on the fabrication of periodic hydrogel microarrays in closed microfluidic systems using non-fluorescent capillary barriers. This design strategy enables the fabrication of picoliter-volume patterns of photopolymerized and thermo-gelling hydrogels without any defects and distortions.
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Affiliation(s)
- Burcu Gumuscu
- BIOS Lab-on-a-Chip Group, MESA+ Institute for Nanotechnology, MIRA Institute for Biomedical Technology and Technical Medicine, University of Twente, Enschede, The Netherlands.
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24
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Poehler E, Herzog C, Lotter C, Pfeiffer SA, Aigner D, Mayr T, Nagl S. Label-free microfluidic free-flow isoelectric focusing, pH gradient sensing and near real-time isoelectric point determination of biomolecules and blood plasma fractions. Analyst 2015; 140:7496-502. [DOI: 10.1039/c5an01345c] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Continuous biomolecular separation and pH gradient observation using UV and NIR fluorescence.
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Affiliation(s)
- Elisabeth Poehler
- Institut für Analytische Chemie
- Universität Leipzig
- 04103 Leipzig
- Germany
| | - Christin Herzog
- Institut für Analytische Chemie
- Universität Leipzig
- 04103 Leipzig
- Germany
| | - Carsten Lotter
- Institut für Analytische Chemie
- Universität Leipzig
- 04103 Leipzig
- Germany
| | - Simon A. Pfeiffer
- Institut für Analytische Chemie
- Universität Leipzig
- 04103 Leipzig
- Germany
| | - Daniel Aigner
- Institut für Analytische Chemie und Lebensmittelchemie
- Technische Universität Graz
- 8010 Graz
- Austria
| | - Torsten Mayr
- Institut für Analytische Chemie und Lebensmittelchemie
- Technische Universität Graz
- 8010 Graz
- Austria
| | - Stefan Nagl
- Institut für Analytische Chemie
- Universität Leipzig
- 04103 Leipzig
- Germany
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25
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Present state of microchip electrophoresis: state of the art and routine applications. J Chromatogr A 2014; 1382:66-85. [PMID: 25529267 DOI: 10.1016/j.chroma.2014.11.034] [Citation(s) in RCA: 130] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2014] [Revised: 11/07/2014] [Accepted: 11/12/2014] [Indexed: 12/20/2022]
Abstract
Microchip electrophoresis (MCE) was one of the earliest applications of the micro-total analysis system (μ-TAS) concept, whose aim is to reduce analysis time and reagent and sample consumption while increasing throughput and portability by miniaturizing analytical laboratory procedures onto a microfluidic chip. More than two decades on, electrophoresis remains the most common separation technique used in microfluidic applications. MCE-based instruments have had some commercial success and have found application in many disciplines. This review will consider the present state of MCE including recent advances in technology and both novel and routine applications in the laboratory. We will also attempt to assess the impact of MCE in the scientific community and its prospects for the future.
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26
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Li Y, Yan X, Feng X, Wang J, Du W, Wang Y, Chen P, Xiong L, Liu BF. Agarose-based microfluidic device for point-of-care concentration and detection of pathogen. Anal Chem 2014; 86:10653-9. [PMID: 25264815 DOI: 10.1021/ac5026623] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Preconcentration of pathogens from patient samples represents a great challenge in point-of-care (POC) diagnostics. Here, a low-cost, rapid, and portable agarose-based microfluidic device was developed to concentrate biological fluid from micro- to picoliter volume. The microfluidic concentrator consisted of a glass slide simply covered by an agarose layer with a binary tree-shaped microchannel, in which pathogens could be concentrated at the end of the microchannel due to the capillary effect and the strong water permeability of the agarose gel. The fluorescent Escherichia coli strain OP50 was used to demonstrate the capacity of the agarose-based device. Results showed that 90% recovery efficiency could be achieved with a million-fold volume reduction from 400 μL to 400 pL. For concentration of 1 × 10(3) cells mL(-1) bacteria, approximately ten million-fold enrichment in cell density was realized with volume reduction from 100 μL to 1.6 pL. Urine and blood plasma samples were further tested to validate the developed method. In conjugation with fluorescence immunoassay, we successfully applied the method to the concentration and detection of infectious Staphylococcus aureus in clinics. The agarose-based microfluidic concentrator provided an efficient approach for POC detection of pathogens.
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Affiliation(s)
- Yiwei Li
- Britton Chance Center for Biomedical Photonics at Wuhan National Laboratory for Optoelectronics - Hubei Bioinformatics & Molecular Imaging Key Laboratory, Systems Biology Theme, Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology , Wuhan, Hubei 430074, China
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27
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Yan J, Yang CZ, Zhang Q, Liu XP, Kong FZ, Cao CX, Jin XQ. Experimental study on the optimization of general conditions for a free-flow electrophoresis device with a thermoelectric cooler†. J Sep Sci 2014; 37:3555-63. [DOI: 10.1002/jssc.201400770] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2014] [Revised: 08/22/2014] [Accepted: 09/04/2014] [Indexed: 11/10/2022]
Affiliation(s)
- Jian Yan
- Key State Laboratory of Microbial Metabolism; School of Life Science and Biotechnology; Shanghai Jiao Tong University; Shanghai China
- Institute of Refrigeration and Cryogenics; School of Mechanical Engineering; Shanghai Jiao Tong University; Shanghai China
| | - Cheng-Zhang Yang
- Key State Laboratory of Microbial Metabolism; School of Life Science and Biotechnology; Shanghai Jiao Tong University; Shanghai China
| | - Qiang Zhang
- Key State Laboratory of Microbial Metabolism; School of Life Science and Biotechnology; Shanghai Jiao Tong University; Shanghai China
| | - Xiao-Ping Liu
- Key State Laboratory of Microbial Metabolism; School of Life Science and Biotechnology; Shanghai Jiao Tong University; Shanghai China
| | - Fan-Zhi Kong
- Key State Laboratory of Microbial Metabolism; School of Life Science and Biotechnology; Shanghai Jiao Tong University; Shanghai China
| | - Cheng-Xi Cao
- Key State Laboratory of Microbial Metabolism; School of Life Science and Biotechnology; Shanghai Jiao Tong University; Shanghai China
| | - Xin-Qiao Jin
- Institute of Refrigeration and Cryogenics; School of Mechanical Engineering; Shanghai Jiao Tong University; Shanghai China
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28
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Phurimsak C, Yildirim E, Tarn MD, Trietsch SJ, Hankemeier T, Pamme N, Vulto P. Phaseguide assisted liquid lamination for magnetic particle-based assays. LAB ON A CHIP 2014; 14:2334-2343. [PMID: 24832933 DOI: 10.1039/c4lc00139g] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We have developed a magnetic particle-based assay platform in which functionalised magnetic particles are transferred sequentially through laminated volumes of reagents and washing buffers. Lamination of aqueous liquids is achieved via the use of phaseguide technology; microstructures that control the advancing air-liquid interface of solutions as they enter a microfluidic chamber. This allows manual filling of the device, eliminating the need for external pumping systems, and preparation of the system requires only a few minutes. Here, we apply the platform to two on-chip strategies: (i) a one-step streptavidin-biotin binding assay, and (ii) a two-step C-reactive protein immunoassay. With these, we demonstrate how condensing multiple reaction and washing processes into a single step significantly reduces procedural times, with both assay procedures requiring less than 8 seconds.
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Affiliation(s)
- Chayakom Phurimsak
- Department of Chemistry, The University of Hull, Cottingham Road, Hull, HU6 7RX, UK.
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29
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Chen Y, Li P, Huang PH, Xie Y, Mai JD, Wang L, Nguyen NT, Huang TJ. Rare cell isolation and analysis in microfluidics. LAB ON A CHIP 2014; 14:626-45. [PMID: 24406985 PMCID: PMC3991782 DOI: 10.1039/c3lc90136j] [Citation(s) in RCA: 201] [Impact Index Per Article: 20.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Rare cells are low-abundance cells in a much larger population of background cells. Conventional benchtop techniques have limited capabilities to isolate and analyze rare cells because of their generally low selectivity and significant sample loss. Recent rapid advances in microfluidics have been providing robust solutions to the challenges in the isolation and analysis of rare cells. In addition to the apparent performance enhancements resulting in higher efficiencies and sensitivity levels, microfluidics provides other advanced features such as simpler handling of small sample volumes and multiplexing capabilities for high-throughput processing. All of these advantages make microfluidics an excellent platform to deal with the transport, isolation, and analysis of rare cells. Various cellular biomarkers, including physical properties, dielectric properties, as well as immunoaffinities, have been explored for isolating rare cells. In this Focus article, we discuss the design considerations of representative microfluidic devices for rare cell isolation and analysis. Examples from recently published works are discussed to highlight the advantages and limitations of the different techniques. Various applications of these techniques are then introduced. Finally, a perspective on the development trends and promising research directions in this field are proposed.
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Affiliation(s)
- Yuchao Chen
- Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, PA 16802, USA
| | - Peng Li
- Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, PA 16802, USA
| | - Po-Hsun Huang
- Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, PA 16802, USA
| | - Yuliang Xie
- Department of Engineering Science and Mechanics, The Pennsylvania State University, University Park, PA 16802, USA
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA 16802, USA
| | - John D. Mai
- Department of Mechanical and Biomedical Engineering, City University of Hong Kong, Kowloon, Hong Kong SAR, PR China
| | - Lin Wang
- Ascent Bio-Nano Technologies Inc., State College, PA 16801, USA
| | - Nam-Trung Nguyen
- Queensland Micro- and Nanotechnology Centre, Griffith University, 170 Kessels Road, Brisbane 4111, Australia
| | - Tony Jun Huang
- Fax: 814-865-9974; Tel: 814-863-4209; Fax: 61-(0)7-3735-8021; Tel: 61-(0)7-3735-3921;
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30
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Ion concentration polarization-based continuous separation device using electrical repulsion in the depletion region. Sci Rep 2013; 3:3483. [PMID: 24352563 PMCID: PMC6506453 DOI: 10.1038/srep03483] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2013] [Accepted: 11/15/2013] [Indexed: 12/21/2022] Open
Abstract
We proposed a novel separation method, which is the first report using ion concentration polarization (ICP) to separate particles continuously. We analyzed the electrical forces that cause the repulsion of particles in the depletion region formed by ICP. Using the electrical repulsion, micro- and nano-sized particles were separated based on their electrophoretic mobilities. Because the separation of particles was performed using a strong electric field in the depletion region without the use of internal electrodes, it offers the advantages of simple, low-cost device fabrication and bubble-free operation compared with conventional continuous electrophoretic separation methods, such as miniaturizing free-flow electrophoresis (μ-FFE). This separation device is expected to be a useful tool for separating various biochemical samples, including cells, proteins, DNAs and even ions.
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Yan J, Guo CG, Liu XP, Kong FZ, Shen QY, Yang CZ, Li J, Cao CX, Jin XQ. A simple and highly stable free-flow electrophoresis device with thermoelectric cooling system. J Chromatogr A 2013; 1321:119-26. [DOI: 10.1016/j.chroma.2013.10.058] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2013] [Revised: 10/01/2013] [Accepted: 10/18/2013] [Indexed: 11/26/2022]
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Trietsch SJ, Israëls GD, Joore J, Hankemeier T, Vulto P. Microfluidic titer plate for stratified 3D cell culture. LAB ON A CHIP 2013; 13:3548-54. [PMID: 23887749 DOI: 10.1039/c3lc50210d] [Citation(s) in RCA: 131] [Impact Index Per Article: 11.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Human tissues and organs are inherently heterogeneous. Their functionality is determined by the interplay between different cell types, their secondary architecture, vascular system and gradients of signaling molecules and metabolites. Here we propose a stratified 3D cell culture platform, in which adjacent lanes of gels and liquids are patterned by phaseguides to capture this tissue heterogeneity. We demonstrate 3D cell culture of HepG2 hepatocytes under continuous perfusion, a rifampicin toxicity assay and co-culture with fibroblasts. 4T1 breast cancer cells are used to demonstrate invasion and aggregation models. The platform is incorporated in a microtiter plate format that renders it fully compatible with automation and high-content screening equipment. The extended functionality, ease of handling and full compatibility to standard equipment is an important step towards adoption of Organ-on-a-Chip technology for screening in an industrial setting.
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Affiliation(s)
- Sebastiaan J Trietsch
- Division of Analytical Biosciences, Leiden Academic Center for Drug Research, Einsteinweg 55, 2333CC, Leiden, The Netherlands.
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Vulto P, Kuhn P, Urban GA. Bubble-free electrode actuation for micro-preparative scale electrophoresis of RNA. LAB ON A CHIP 2013; 13:2931-2936. [PMID: 23764936 DOI: 10.1039/c3lc50332a] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
A microfluidic chip is presented for lysis and one-step RNA purification from bacteria. Bacteria are lysed by joule-heating followed by a gel electrophoresis step for clean-up and subsequent elution of small RNA. Bubble formation during electrophoresis at constant current is suppressed through the use of a silver chloride cathode and a silver anode. To prevent silver chloride sediment in the bulk solution, the anode was immersed in a saturated chloride solution. Salt bridges in the form of polyacrylamide gels are used that could be precisely patterned with the help of phaseguides. Bubble-free actuation could be performed for more than 20 min under a constant current. For longer actuation times, cathodic silver-chloride became depleted and a silver-chloride sediment formed in the anodic microchamber at increasing distance from the anode with time. The chip functioning was verified by extraction of transfer-messenger RNA from Escherichia coli and subsequent amplification using reverse transcription real-time PCR. Incorporation of salt bridges enables effective bubble free actuation of Ag/AgCl electrodes in a microfluidic chip. This opens up new possibilities in a surge towards fully integrated diagnostic cartridges that are miniaturized and disposable.
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Affiliation(s)
- Paul Vulto
- Leiden Academic Centre for Drug Research (LACDR), Division of Analytical Biosciences, Leiden University, Einsteinweg 55, 2333CC, Leiden, The Netherlands.
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Jezierski S, Klein AS, Benz C, Schaefer M, Nagl S, Belder D. Towards an integrated device that utilizes adherent cells in a micro-free-flow electrophoresis chip to achieve separation and biosensing. Anal Bioanal Chem 2013; 405:5381-6. [PMID: 23591645 DOI: 10.1007/s00216-013-6945-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2013] [Revised: 03/16/2013] [Accepted: 03/25/2013] [Indexed: 11/28/2022]
Abstract
We immobilized adherent human embryonic kidney (HEK) cells--which are able to trace adenosine triphosphate (ATP)--inside a microfluidic free-flow electrophoresis (μFFE) chip in order to develop an integrated device combining separation and biosensing capabilities. HEK 293 cells loaded with fluorescent calcium indicators were used as a model system to enable the spatially and temporally resolved detection of ATP. The local position of a 20 μM ATP stream was successfully visualized by these cells during free-flow electrophoresis, demonstrating the on-line detection capability of this technique towards native, unlabeled compounds.
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Affiliation(s)
- Stefan Jezierski
- Institut für Analytische Chemie, Universität Leipzig, Johannisallee 29, 04103 Leipzig, Germany
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Jezierski S, Belder D, Nagl S. Microfluidic free-flow electrophoresis chips with an integrated fluorescent sensor layer for real time pH imaging in isoelectric focusing. Chem Commun (Camb) 2013; 49:904-6. [DOI: 10.1039/c2cc38093e] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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36
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Jezierski S, Tehsmer V, Nagl S, Belder D. Integrating continuous microflow reactions with subsequent micropreparative separations on a single microfluidic chip. Chem Commun (Camb) 2013; 49:11644-6. [DOI: 10.1039/c3cc46548a] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Hakenberg S, Hügle M, Weidmann M, Hufert F, Dame G, Urban GA. A phaseguided passive batch microfluidic mixing chamber for isothermal amplification. LAB ON A CHIP 2012; 12:4576-4580. [PMID: 22952055 DOI: 10.1039/c2lc40765e] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
With a view to developing a rapid pathogen detection system utilizing isothermal nucleic acid amplification, the necessary micro-mixing step is innovatively implemented on a chip. Passive laminar flow mixing of two 6.5 μl batches differing in viscosity is performed within a microfluidic chamber. This is achieved with a novel chip space-saving phaseguide design which allows, for the first time, the complete integration of a passive mixing structure into a target chamber. Sequential filling of batches prior to mixing is demonstrated. Simulation predicts a reduction of diffusive mixing time from hours down to one minute. A simple and low-cost fabrication method is used which combines dry film resist technology and direct wafer bonding. Finally, an isothermal nucleic acid detection assay is successfully implemented where fluorescence results are measured directly from the chip after a one minute mixing sequence. In combination with our previous work, this opens up the way towards a fully integrated pathogen detection system in a lab-on-a-chip format.
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Affiliation(s)
- Sydney Hakenberg
- Laboratory for Sensors, Department for Microsystem Engineering (IMTEK), Albert-Ludwigs-University Freiburg, Georges-Köhler-Allee 103, 79110 Freiburg, Germany.
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Prest JE, Baldock SJ, Fielden PR, Goddard NJ, Goodacre R, O’Connor R, Treves Brown BJ. Miniaturised free flow isotachophoresis of bacteria using an injection moulded separation device. J Chromatogr B Analyt Technol Biomed Life Sci 2012; 903:53-9. [DOI: 10.1016/j.jchromb.2012.06.040] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2012] [Revised: 06/29/2012] [Accepted: 06/30/2012] [Indexed: 11/25/2022]
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Ding H, Li X, Lv X, Xu J, Sun X, Zhang Z, Wang H, Deng Y. Fabrication of micro free-flow electrophoresis chip by photocurable monomer binding microfabrication technique for continuous separation of proteins and their numerical simulation. Analyst 2012; 137:4482-9. [DOI: 10.1039/c2an35535c] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Puchberger-Enengl D, Podszun S, Heinz H, Hermann C, Vulto P, Urban GA. Microfluidic concentration of bacteria by on-chip electrophoresis. BIOMICROFLUIDICS 2011; 5:44111-4411110. [PMID: 22207893 PMCID: PMC3246011 DOI: 10.1063/1.3664691] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2011] [Accepted: 10/31/2011] [Indexed: 05/04/2023]
Abstract
In this contribution, we present a system for efficient preconcentration of pathogens without affecting their viability. Development of miniaturized molecular diagnostic kits requires concentration of the sample, molecule extraction, amplification, and detection. In consequence of low analyte concentrations in real-world samples, preconcentration is a critical step within this workflow. Bacteria and viruses exhibit a negative surface charge and thus can be electrophoretically captured from a continuous flow. The concept of phaseguides was applied to define gel membranes, which enable effective and reversible collection of the target species. E. coli of the strains XL1-blue and K12 were used to evaluate the performance of the device. By suppression of the electroosmotic flow both strains were captured with efficiencies of up to 99%. At a continuous flow of 15 μl/min concentration factors of 50.17 ± 2.23 and 47.36 ± 1.72 were achieved in less than 27 min for XL1-blue and K12, respectively. These results indicate that free flow electrophoresis enables efficient concentration of bacteria and the presented device can contribute to rapid analyses of swab-derived samples.
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