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Shan WL, Hou HH, Si N, Wang CX, Yuan G, Gao X, Jin GX. Selective Construction and Structural Transformation of Homogeneous Linear Metalla[4]catenane and Metalla[2]catenane Assemblies. Angew Chem Int Ed Engl 2024; 63:e202402198. [PMID: 38319045 DOI: 10.1002/anie.202402198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 02/02/2024] [Accepted: 02/04/2024] [Indexed: 02/07/2024]
Abstract
Although the synthesis of mechanically interlocked molecules has been extensively researched, selectively constructing homogeneous linear [4]catenanes remains a formidable challenge. Here, we selectively constructed a homogeneous linear metalla[4]catenane in a one-step process through the coordination-driven self-assembly of a bidentate benzothiadiazole derivative ligand and a binuclear half-sandwich rhodium precursor. The formation of metalla[4]catenanes was facilitated by cooperative interactions between strong sandwich-type π-π stacking and non-classical hydrogen bonds between the components. Moreover, by modulating the aromatic substituents on the binuclear precursor, two homogeneous metalla[2]catenanes were obtained. The molecular structures of these metallacatenanes were unambiguously characterized by single-crystal X-ray diffraction analysis. Additionally, reversible structural transformation between metal-catenanes and the corresponding metallarectangles could be achieved by altering their concentration, as confirmed by mass spectrometry and NMR spectroscopy studies.
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Affiliation(s)
- Wei-Long Shan
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan, 243002, P. R. China
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai, 200433, P. R. China
| | - Huan-Huan Hou
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan, 243002, P. R. China
| | - Nian Si
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan, 243002, P. R. China
| | - Cai-Xia Wang
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan, 243002, P. R. China
| | - Guozan Yuan
- School of Chemistry and Chemical Engineering, Anhui University of Technology, Maanshan, 243002, P. R. China
| | - Xiang Gao
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai, 200433, P. R. China
| | - Guo-Xin Jin
- State Key Laboratory of Molecular Engineering of Polymers, Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, 2005 Songhu Road, Shanghai, 200433, P. R. China
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2
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Van Raden JM, Deng JR, Gotfredsen H, Hergenhahn J, Clarke M, Edmondson M, Hart J, O'Shea JN, Duarte F, Saywell A, Anderson HL. Template-Directed Synthesis of Strained meso-meso-Linked Porphyrin Nanorings. Angew Chem Int Ed Engl 2024; 63:e202400103. [PMID: 38230920 DOI: 10.1002/anie.202400103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2024] [Revised: 01/17/2024] [Accepted: 01/17/2024] [Indexed: 01/18/2024]
Abstract
Strained macrocycles display interesting properties, such as conformational rigidity, often resulting in enhanced π-conjugation or enhanced affinity for non-covalent guest binding, yet they can be difficult to synthesize. Here we use computational modeling to design a template to direct the formation of an 18-porphyrin nanoring with direct meso-meso bonds between the porphyrin units. Coupling of a linear 18-porphyrin oligomer in the presence of this template gives the target nanoring, together with an unexpected 36-porphyrin ring by-product. Scanning tunneling microscopy (STM) revealed the elliptical conformations and flexibility of these nanorings on a Au(111) surface.
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Affiliation(s)
- Jeff M Van Raden
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
| | - Jie-Ren Deng
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
| | - Henrik Gotfredsen
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
| | - Janko Hergenhahn
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
| | - Michael Clarke
- School of Physics & Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Matthew Edmondson
- School of Physics & Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Jack Hart
- School of Physics & Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK
| | - James N O'Shea
- School of Physics & Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Fernanda Duarte
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
| | - Alex Saywell
- School of Physics & Astronomy, University of Nottingham, Nottingham, NG7 2RD, UK
| | - Harry L Anderson
- Department of Chemistry, University of Oxford, Chemistry Research Laboratory, Oxford, OX1 3TA, UK
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3
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Zhang Z, Zhao J, Yan X. Mechanically Interlocked Polymers with Dense Mechanical Bonds. Acc Chem Res 2024; 57:992-1006. [PMID: 38417011 DOI: 10.1021/acs.accounts.4c00006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2024]
Abstract
ConspectusMechanically interlocked polymers (MIPs) such as polyrotaxanes and polycatenanes are polymer architectures that incorporate mechanical bonds, which represent a compelling frontier in polymer science. MIPs with cross-linked structures are known as mechanically interlocked networks (MINs) and are widely utilized in materials science. Leveraging the motion of mechanical bonds, MINs hold the potential for achieving a combination of robustness and dynamicity. Currently, the reported MINs predominantly consist of networks with discrete mechanical bonds as cross-linking points, exemplified by well-known slide-ring materials and rotaxane/catenane cross-linked polymers. The motion of these mechanically interlocked cross-linking points facilitates the redistribution of tension throughout the network, effectively preventing stress concentration and thereby enhancing material toughness. In these instances, the impact of mechanical bonds can be likened to the adage "small things can make a big difference", whereby a limited number of mechanical bonds substantially elevate the mechanical performance of conventional polymers. In addition to MINs cross-linked by mechanical bonds, there is another type of MIN in which their principal parts are polymer chains composed of dense mechanical bonds. Within these MINs, mechanical bonds generally serve as repeating units, and their unique properties stem from integrating and amplifying the function of a large amount of mechanical bonds. Consequently, MINs with dense mechanical bonds tend to reflect the intrinsic properties of mechanical interlocked polymers, making their exploration critical for a comprehensive understanding of MIPs. Nevertheless, investigations into MINs featuring dense mechanical bonds remain relatively scarce.This Account presents a comprehensive overview of our investigation and insights into MINs featuring dense mechanical bonds. First, we delve into the synthetic strategies employed to effectively prepare MINs with dense mechanical bonds, while critically evaluating their advantages and limitations. Through meticulous control of the core interlocking step, three distinct strategies have emerged: mechanical interlocking followed by polymerization, supramolecular polymerization followed by mechanical interlocking, and dynamic interlocking. Furthermore, we underscore the structure-property relationships of MINs with dense mechanical bonds. The macroscopic properties of MINs originate from integrating and amplifying countless microscopic motions of mechanical bonds, a phenomenon we define as an integration and amplification mechanism. Our investigation has revealed detailed motion characteristics of mechanical bonds in bulk mechanically interlocked materials, encompassing the quantification of motion activation energy, discrimination of varying motion distances, and elucidation of the recovery process. Additionally, we have elucidated their influence on the mechanical performance of the respective materials. Moreover, we have explored potential applications of MINs, leveraging their exceptional mechanical properties and dynamicity. These applications include enhancing the toughness of conventional polymers, engineering mechanically adaptive and multifunctional aerogels, and mitigating Li protrusion as interfacial layers in lithium-ion batteries. Finally, we offer our personal perspectives on the promises, opportunities, and key challenges in the future development of MINs with dense mechanical bonds, underscoring the potential for transformative advancements in this burgeoning field.
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Affiliation(s)
- Zhaoming Zhang
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Jiao Tong University, Shanghai 200240, P. R. China
| | - Jun Zhao
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Jiao Tong University, Shanghai 200240, P. R. China
| | - Xuzhou Yan
- School of Chemistry and Chemical Engineering, Frontiers Science Center for Transformative Molecules, Shanghai Jiao Tong University, Shanghai 200240, P. R. China
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4
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Sarwa A, Białońska A, Sobieraj M, Martínez JP, Trzaskowski B, Szyszko B. Iminopyrrole-Based Self-Assembly: A Route to Intrinsically Flexible Molecular Links and Knots. Angew Chem Int Ed Engl 2024; 63:e202316489. [PMID: 38032333 DOI: 10.1002/anie.202316489] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 11/29/2023] [Accepted: 11/30/2023] [Indexed: 12/01/2023]
Abstract
The use of 2,5-diformylpyrrole in self-assembly reactions with diamines and Zn(II)/Cd(II) salts allowed the preparation of [2]catenane, trefoil knot, and Borromean rings. The intrinsically dynamic nature of the diiminopyrrole motif rendered all of the formed assemblies intramolecularly flexible. The presence of diiminopyrrole revealed new coordination motifs and influenced the host-guest chemistry of the systems, as illustrated by hexafluorophosphate encapsulation by Borromean rings.
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Affiliation(s)
- Aleksandra Sarwa
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
| | - Agata Białońska
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
| | - Michał Sobieraj
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
| | - Juan Pablo Martínez
- Centre of New Technologies, University of Warsaw, 2c Banach St., 02-097, Warsaw, Poland
| | - Bartosz Trzaskowski
- Centre of New Technologies, University of Warsaw, 2c Banach St., 02-097, Warsaw, Poland
| | - Bartosz Szyszko
- Faculty of Chemistry, University of Wrocław, 14 F. Joliot-Curie St., 50-387, Wrocław, Poland
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Bella G, Holub J, Bruno G, Nicolò F, Santoro A. Mononuclear or Coordination Polymer Complexes? Both Are Possible for 3,6,9-Trioxaundecanedioic Acid. Molecules 2023; 28:7410. [PMID: 37959829 PMCID: PMC10650274 DOI: 10.3390/molecules28217410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 10/27/2023] [Accepted: 10/31/2023] [Indexed: 11/15/2023] Open
Abstract
Investigating the driving forces leading to the formation of a specific supramolecular architecture among a wide spectrum of all the possibly obtainable structures is not an easy task. The contemporary literature provides several models for correctly predicting the thermodynamically accessible structures that can originate from a library of building blocks. Definitions are rigid by their very nature, so their application may sometimes require a shift in perspective. In the study presented herein, we describe the crystal structures of three metallo-supramolecular architectures assembled from deprotonated derivatives of 3,6,9-trioxaundecanedioic acid and Mn(II), Co(II) and Zn(II). In the Mn(II) case, the complexation resulted in a complex of a discrete/heptacoordinated nature, whereas the other two structures appeared as helical polymers. To explain such an anomaly, in this work, we describe how the interplay between the flexibility of the ligand spacer and the number of coordinating atoms involved determines the divergent or convergent organisation of the final coordination architecture.
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Affiliation(s)
- Giovanni Bella
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Viale F. Stagno d’Alcontres 31, 98166 Messina, Italy; (G.B.); (G.B.); (F.N.)
| | - Jan Holub
- Department of Inorganic Chemistry, University of Chemistry and Technology, Prague, CZ-16628 Prague, Czech Republic;
| | - Giuseppe Bruno
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Viale F. Stagno d’Alcontres 31, 98166 Messina, Italy; (G.B.); (G.B.); (F.N.)
| | - Francesco Nicolò
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Viale F. Stagno d’Alcontres 31, 98166 Messina, Italy; (G.B.); (G.B.); (F.N.)
| | - Antonio Santoro
- Department of Chemical, Biological, Pharmaceutical and Environmental Sciences, University of Messina, Viale F. Stagno d’Alcontres 31, 98166 Messina, Italy; (G.B.); (G.B.); (F.N.)
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Su P, Zhang W, Guo C, Liu H, Xiong C, Tang R, He C, Chen Z, Yu X, Wang H, Li X. Constructing Ultrastable Metallo-Cages via In Situ Deprotonation/Oxidation of Dynamic Supramolecular Assemblies. J Am Chem Soc 2023; 145:18607-18622. [PMID: 37566725 DOI: 10.1021/jacs.3c06211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2023]
Abstract
Coordination-driven self-assembly enables the spontaneous construction of metallo-supramolecules with high precision, facilitated by dynamic and reversible metal-ligand interactions. The dynamic nature of coordination, however, results in structural lability in many metallo-supramolecular assembly systems. Consequently, it remains a formidable challenge to achieve self-assembly reversibility and structural stability simultaneously in metallo-supramolecular systems. To tackle this issue, herein, we incorporate an acid-/base-responsive tridentate ligand into multitopic building blocks to precisely construct a series of metallo-supramolecular cages through coordination-driven self-assembly. These dynamic cagelike assemblies can be transformed to their static states through mild in situ deprotonation/oxidation, leading to ultrastable skeletons that can withstand high temperatures, metal ion chelators, and strong acid/base conditions. This in situ transformation provides a reliable and powerful approach to manipulate the kinetic features and stability of metallo-supramolecules and allows for modulation of encapsulation and release behaviors of metallo-cages when utilizing nanoscale quantum dots (QDs) as guest molecules.
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Affiliation(s)
- Pingru Su
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
- Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen, Guangdong 518060, People's Republic of China
| | - Wenjing Zhang
- Green Catalysis Center, College of Chemistry, Zhengzhou University, Zhengzhou, Henan 450001, People's Republic of China
| | - Chenxing Guo
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Hong Liu
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Chuanhong Xiong
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Runxu Tang
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Chuanxin He
- Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen, Guangdong 518060, People's Republic of China
| | - Zhi Chen
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Xiujun Yu
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Heng Wang
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, People's Republic of China
- Shenzhen University General Hospital, Shenzhen University Clinical Medical Academy, Shenzhen, Guangdong 518055, People's Republic of China
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7
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Chen T, Zhao Y, Dang LL, Zhang TT, Lu XL, Chai YH, Lu MY, Aznarez F, Ma LF. Self-Assembly and Photothermal Conversion of MetallaRussian Doll and Metalla[2]catenanes Induced via Multiple Stacking Interactions. J Am Chem Soc 2023; 145:18036-18047. [PMID: 37459092 DOI: 10.1021/jacs.3c05720] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/17/2023]
Abstract
A variety of organometallic supramolecular architectures have been constructed over the past decades and their properties were also explored via different strategies. However, the synthesis of metalla-Russian doll is still a fascinating challenge. Herein, a series of new coordination supramolecular complexes, including a metalla-Russian doll, metalla[2]catenanes, and metallarectangles, were synthesized by using meticulously selected Cp*Rh (Cp* = η5-C5Me5) building units (E1, E2, and E3) and three rigid anthracylpyridine ligands (L1, L2, and L3) via a self-assembly strategy. While the combination of the short ligand L1 and E1 or E2 generated two metallarectangles, the longer ligand L2 containing an alkynyl group resulted in two new [2]catenanes, most likely due to which the strong electron-donating effect of alkynyl groups causes self-accumulation. Interestingly, an unusual Russian doll assembly was obtained through the reaction of L3 and E3 based on sextuple π···π stacking interactions. Furthermore, the dynamic structural conversion between [2]catenanes and the corresponding metallarectangles could be observed through concentration-, solvent-, and guest-induced effects. The [2]catenane complexes 4b displayed efficient photothermal conversion efficiency in solution (20.2%), in comparison with other organometallic macrocycles. We believe that π···π stacking interactions generate active nonradiative pathways and promote radiative photodeactivation pathways. This study proves the versatility of half-sandwich building units, not only to build complicated supramolecular topologies but also in effective functional materials for various appealing applications.
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Affiliation(s)
- Tian Chen
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
- College of Chemistry, Zhengzhou University, Zhengzhou 450001, P. R. China
| | - Ying Zhao
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
| | - Li-Long Dang
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, P. R. China
| | - Ting-Ting Zhang
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
| | - Xiao-Li Lu
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
| | - Yin-Hang Chai
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
| | - Ming-Yu Lu
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
| | - Francisco Aznarez
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, P. R. China
| | - Lu-Fang Ma
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Luoyang 471934, P. R. China
- College of Chemistry, Zhengzhou University, Zhengzhou 450001, P. R. China
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8
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Xu Y, Zhang H, Su H, Ma J, Yu H, Li K, Shi J, Hao XQ, Wang K, Song B, Wang M. Hourglass-Shaped Nanocages with Concaved Structures Based on Selective Self-Complementary Coordination Ligands and Tunable Hierarchical Self-Assembly. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2023:e2300009. [PMID: 36964988 DOI: 10.1002/smll.202300009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/01/2023] [Revised: 02/22/2023] [Indexed: 06/18/2023]
Abstract
Three-dimensional (3D) structures constructed via coordination-driven self-assemblies have recently garnered increasing attention due to the challenges in structural design and potential applications. In particular, developing new strategy for the convenient and precise self-assemblies of 3D supramolecular structures is of utmost interest. Introducing the concept of self-coordination ligands, herein the design and synthesis of two meta-modified terpyridyl ligands with selective self-complementary coordination moiety are reported and their capability to assemble into two hourglass-shaped nanocages SA and SB is demonstrated. Within these 3D structures, the meta-modified terpyridyl unit preferably coordinates with itself to serve as concave part. By changing the arm length of the ligands, hexamer (SA) and tetramer (SB) are obtained respectively. In-depth studies on the assembly mechanism of SA and SB indicate that the dimers could be formed first via self-complementary coordination and play crucial roles in controlling the final structures. Moreover, both SA and SB can go through hierarchical self-assemblies in solution as well as on solid-liquid interface, which are characterized by transmission electron microscope (TEM) and scanning tunneling microscopy (STM). It is further demonstrated that various higher-order assembly structures can be achieved by tuning the environmental conditions.
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Affiliation(s)
- Yaping Xu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
| | - Haixin Zhang
- Department of Physics and Astronomy, Mississippi State University, Mississippi State, MS, 39762, USA
| | - Haoyue Su
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
| | - Jianjun Ma
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
| | - Hao Yu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
| | - Kehuan Li
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
| | - Junjuan Shi
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
| | - Xin-Qi Hao
- College of Chemistry and Green Catalysis Center, Zhengzhou University, Zhengzhou, Henan, 450001, China
| | - Kun Wang
- Department of Physics and Astronomy, Mississippi State University, Mississippi State, MS, 39762, USA
- Department of Chemistry, Mississippi State University, Mississippi State, MS, 39762, USA
| | - Bo Song
- Department of Chemistry, Northwestern University, Evanston, IL, 60208, USA
| | - Ming Wang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin, 130012, China
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Ayme JF, Bruchmann B, Karmazin L, Kyritsakas N. Transient self-assembly of metal-organic complexes. Chem Sci 2023; 14:1244-1251. [PMID: 36756320 PMCID: PMC9891378 DOI: 10.1039/d2sc06374c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2022] [Accepted: 01/06/2023] [Indexed: 01/11/2023] Open
Abstract
Implementing transient processes in networks of dynamic molecules holds great promise for developing new functional behaviours. Here we report that trichloroacetic acid can be used to temporarily rearrange networks of dynamic imine-based metal complexes towards new equilibrium states, forcing them to express complexes otherwise unfavourable in their initial equilibrium states. Basic design principles were determined for the creation of such networks. Where a complex distribution of products was obtained in the initial equilibrium state of the system, the transient rearrangement temporarily yielded a simplified output, forcing a more structured distribution of products. Where a single complex was obtained in the initial equilibrium state of the system, the transient rearrangement temporarily modified the properties of this complex. By doing so, the mechanical properties of an helical macrocyclic complex could be temporarily altered by rearranging it into a [2]catenane.
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Affiliation(s)
- Jean-François Ayme
- BASF SE, Joint Research Network on Advanced Materials and Systems (JONAS) Carl-Bosch Str. 38 67056 Ludwigshafen Germany
| | - Bernd Bruchmann
- BASF SE, Joint Research Network on Advanced Materials and Systems (JONAS) Carl-Bosch Str. 38 67056 Ludwigshafen Germany
| | - Lydia Karmazin
- Service de Radiocristallographie, Fédération de chimie Le Bel FR2010, Université de Strasbourg1 rue Blaise Pascal67008 StrasbourgFrance
| | - Nathalie Kyritsakas
- Service de Radiocristallographie, Fédération de chimie Le Bel FR2010, Université de Strasbourg1 rue Blaise Pascal67008 StrasbourgFrance
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10
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Synthesis, structure, and host-guest chemistry of a pair of isomeric selenanthrene-bridged molecular cages. CHINESE CHEM LETT 2023. [DOI: 10.1016/j.cclet.2023.108179] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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11
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Zhao Y, Rothörl J, Besenius P, Virnau P, Daoulas KC. Can Polymer Helicity Affect Topological Chirality of Polymer Knots? ACS Macro Lett 2023; 12:234-240. [PMID: 36706453 PMCID: PMC9948535 DOI: 10.1021/acsmacrolett.2c00600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
We investigate the effect of helicity in isolated polymers on the topological chirality of their knots with computer simulations. Polymers are described by generic worm-like chains (WLC), where helical conformations are promoted by chiral coupling between segments that are neighbors along the chain contour. The sign and magnitude of the coupling coefficient u determine the sense and strength of helicity. The corrugation of the helix is adjusted via the radius R of a spherical, hard excluded volume around each WLC segment. Open and compact helices are, respectively, obtained for R that is either zero or smaller than the length of the WLC bond, and R that is a few times larger than the bond length. We use a Monte Carlo algorithm to sample polymer conformations for different values of u, spanning the range from achiral polymers to chains with well-developed helices. Monitoring the average helix torsion and fluctuations of chiral order as a function of u, for two very different chain lengths, demonstrates that the coil-helix transition in this model is not a phase transition but a crossover. Statistical analysis of conformations forming the simplest chiral knots, 31, 51, and 52, demonstrates that topological mirror symmetry is broken─knots formed by helices with a given sense prefer one handedness over the other. For the 31 and 51 knots, positive helical sense favors positive handedness. Intriguingly, an opposite trend is observed for 52 knots, where positive helical sense promotes negative handedness. We argue that this special coupling between helicity and topological chirality stems from a generic mechanism: conformations where some of the knot crossings are found in "braids" formed by two tightly interwoven sections of the polymer.
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Affiliation(s)
- Yani Zhao
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany
| | - Jan Rothörl
- Department
of Physics, Johannes Gutenberg University
Mainz, Staudingerweg 9, 55128 Mainz, Germany
| | - Pol Besenius
- Department
of Chemistry, Johannes Gutenberg University
Mainz, Duesbergweg 10-14, 55128 Mainz, Germany
| | - Peter Virnau
- Department
of Physics, Johannes Gutenberg University
Mainz, Staudingerweg 9, 55128 Mainz, Germany,E-mail:
| | - Kostas Ch. Daoulas
- Max
Planck Institute for Polymer Research, Ackermannweg 10, 55128 Mainz, Germany,E-mail: . Phone: +49
(0)6131 379218
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13
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Li Z, Chen M, Chen Z, Zhu YL, Guo C, Wang H, Qin Y, Fang F, Wang D, Su C, He C, Yu X, Lu ZY, Li X. Non-equilibrium Nanoassemblies Constructed by Confined Coordination on a Polymer Chain. J Am Chem Soc 2022; 144:22651-22661. [PMID: 36411055 DOI: 10.1021/jacs.2c09726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Biological systems employ non-equilibrium self-assembly to create ordered nanoarchitectures with sophisticated functions. However, it is challenging to construct artificial non-equilibrium nanoassemblies due to lack of control over assembly dynamics and kinetics. Herein, we design a series of linear polymers with different side groups for further coordination-driven self-assembly based on shape-complementarity. Such a design introduces a main-chain confinement which effectively slows down the assembly process of side groups, thus allowing us to monitor the real-time evolution of lychee-like nanostructures. The function related to the non-equilibrium nature is further explored by performing photothermal conversion study. The ability to observe and capture non-equilibrium states in this supramolecular system will enhance our understanding of the thermodynamic and kinetic features as well as functions of living systems.
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Affiliation(s)
- Zhikai Li
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China.,Institute of Microscale Optoelectronics, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Min Chen
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Zhi Chen
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - You-Liang Zhu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Chenxing Guo
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Heng Wang
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Yi Qin
- Center for AIE Research, College of Materials Science and Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Fang Fang
- Instrumental Analysis Center, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Dong Wang
- Center for AIE Research, College of Materials Science and Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Chenliang Su
- Institute of Microscale Optoelectronics, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Chuanxin He
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Xiujun Yu
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China
| | - Zhong-Yuan Lu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, Guangdong 518060, China.,Shenzhen University General Hospital, Shenzhen University Clinical Medical Academy, Shenzhen, Guangdong 518055, China
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14
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Hagita K, Murashima T, Sakata N, Shimokawa K, Deguchi T, Uehara E, Fujiwara S. Molecular Dynamics of Topological Barriers on the Crystallization Behavior of Ring Polyethylene Melts with Trefoil Knots. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01843] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Katsumi Hagita
- Department of Applied Physics, National Defense Academy, 1-10-20, Hashirimizu, Yokosuka239-8686, Japan
| | - Takahiro Murashima
- Department of Physics, Tohoku University, 6-3, Aramaki-aza-Aoba, Aoba-ku, Sendai980-8578, Japan
| | - Naoki Sakata
- Department of Mathematics, Saitama University, 255, Shimo-Okubo, Sakura-ku, Saitama338-8570, Japan
- Department of Physics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Koya Shimokawa
- Department of Mathematics, Saitama University, 255, Shimo-Okubo, Sakura-ku, Saitama338-8570, Japan
- Department of Mathematics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Tetsuo Deguchi
- Department of Physics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Erica Uehara
- Department of Physics, Ochanomizu University, 2-1-1, Otsuka, Bunkyo-ku, Tokyo112-8610, Japan
| | - Susumu Fujiwara
- Faculty of Materials Science and Engineering, Kyoto Institute of Technology, Matsugasaki,
Sakyo-ku, Kyoto606-8585, Japan
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15
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Tagliabue A, Micheletti C, Mella M. Tuning Knotted Copolyelectrolyte Conformations via Solution Properties. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2022]
Affiliation(s)
- Andrea Tagliabue
- Dipartimento di Scienza ed Alta Tecnologia, Università degli Studi dell’Insubria, via Valleggio 11, 22100Como, Italy
- SISSA (Scuola Internazionale Superiore di Studi Avanzati), via Bonomea 265, 34136Trieste, Italy
| | - Cristian Micheletti
- SISSA (Scuola Internazionale Superiore di Studi Avanzati), via Bonomea 265, 34136Trieste, Italy
| | - Massimo Mella
- Dipartimento di Scienza ed Alta Tecnologia, Università degli Studi dell’Insubria, via Valleggio 11, 22100Como, Italy
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16
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Zhang W, Zhao J, Yang D. Anion-Coordination-Driven Assembly: From Discrete Supramolecular Self-Assemblies to Functional Soft Materials. Chempluschem 2022; 87:e202200294. [PMID: 36410745 DOI: 10.1002/cplu.202200294] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Revised: 10/18/2022] [Indexed: 01/31/2023]
Abstract
Anion templated assembly of supramolecular systems has been extensively explored in previous reports, whereas anions serve only as an auxiliary and spectator role. With the development of anion coordination chemistry in recent years, anion coordination-driven assembly (ACDA) has emerged as a new strategy for the construction of supramolecular self-assemblies. Anions are proved to exist as the main actors in the construction of supramolecular architectures, i. e., serve as the coordination center. This Review will focus on the recent progress in anion-coordination-driven assembly of discrete supramolecular architectures, such as helicates, polyhedrons and polygons, and the various applications of 'aniono'-systems. At the end of this Review, we highlight current challenges and opportunities for future research of anion-coordination-driven self-assembly.
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Affiliation(s)
- Wenyao Zhang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, P. R. China.,Key Laboratory of Magnetic Molecules and Magnetic Information Materials (Ministry of Education), School of Chemistry and Material Science, Shanxi Normal University, Taiyuan, 030006, P. R. China
| | - Jie Zhao
- School of Chemistry and Chemical Engineering, Xi'an University of Architecture and Technology, Xi'an, 710055, P. R. China
| | - Dong Yang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, P. R. China
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17
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Joseph J, Mobian P, Chaumont A, Wytko JA, Weiss J. Going Up the Ladder: Stacking Four 4,4'-Bipyridine Moieties within a Ti(IV)-Based Tetranuclear Architecture. Inorg Chem 2022; 61:16448-16457. [PMID: 36201371 DOI: 10.1021/acs.inorgchem.2c02566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Biphenol-based ligands have proven their ability to bind titanium(IV) centers and generate sophisticated self-assembled structures in which auxiliary nitrogen ligands often complete the coordination sphere of the metal and improve stability. Here, a central 4,4'-bipyridine, which acts as both a spacer and a source of monodentate nitrogen to complete the coordination sphere of the Ti(IV) complex, was incorporated within two bis-2,2'-biphenol strands, 3H4 and 4H4. Both proligands possess structural features that are well adapted to form self-assembled structures built from titanium-oxygen-nitrogen units; however, their different degrees of torsional freedom strongly influenced the nuclearity of the complexes formed. The presence of a phenyl spacer between the bipyridine and the biphenol moieties of 3H4 provided enough flexibility for the ligand to wrap around one titanium(IV) center to form a mononuclear complex Ti(3)(DMF)2 in the presence of dimethylformamide (DMF). Assembly of the more rigid ligand 4H4 with Ti(OiPr)4 afforded a tetranuclear complex Ti4(4)2(4H)2(OEt)2 containing four stacked 4,4'-bipyridine units as shown by the X-ray structure of the complex. Density functional theory studies suggested that the assembly of this tetrametallic complex involves a dimetallic intermediate with TiO6 nodes that is converted to the thermodynamically stable tetranuclear complex with two TiO6 nodes and two TiO5N units with enhanced covalent character.
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Affiliation(s)
- Jean Joseph
- Institut de Chimie de Strasbourg, UMR 7177 CNRS-Université de Strasbourg, 4 rue Blaise Pascal, 67008Strasbourg, France
| | - Pierre Mobian
- Chimie de la matière complexe, UMR 7140 CNRS-Université de Strasbourg, 4 rue Blaise Pascal, 67008Strasbourg, France
| | - Alain Chaumont
- Chimie de la matière complexe, UMR 7140 CNRS-Université de Strasbourg, 4 rue Blaise Pascal, 67008Strasbourg, France
| | - Jennifer A Wytko
- Institut de Chimie de Strasbourg, UMR 7177 CNRS-Université de Strasbourg, 4 rue Blaise Pascal, 67008Strasbourg, France
| | - Jean Weiss
- Institut de Chimie de Strasbourg, UMR 7177 CNRS-Université de Strasbourg, 4 rue Blaise Pascal, 67008Strasbourg, France
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18
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Ashbridge Z, Fielden SDP, Leigh DA, Pirvu L, Schaufelberger F, Zhang L. Knotting matters: orderly molecular entanglements. Chem Soc Rev 2022; 51:7779-7809. [PMID: 35979715 PMCID: PMC9486172 DOI: 10.1039/d2cs00323f] [Citation(s) in RCA: 22] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2022] [Indexed: 11/29/2022]
Abstract
Entangling strands in a well-ordered manner can produce useful effects, from shoelaces and fishing nets to brown paper packages tied up with strings. At the nanoscale, non-crystalline polymer chains of sufficient length and flexibility randomly form tangled mixtures containing open knots of different sizes, shapes and complexity. However, discrete molecular knots of precise topology can also be obtained by controlling the number, sequence and stereochemistry of strand crossings: orderly molecular entanglements. During the last decade, substantial progress in the nascent field of molecular nanotopology has been made, with general synthetic strategies and new knotting motifs introduced, along with insights into the properties and functions of ordered tangle sequences. Conformational restrictions imparted by knotting can induce allostery, strong and selective anion binding, catalytic activity, lead to effective chiral expression across length scales, binding modes in conformations efficacious for drug delivery, and facilitate mechanical function at the molecular level. As complex molecular topologies become increasingly synthetically accessible they have the potential to play a significant role in molecular and materials design strategies. We highlight particular examples of molecular knots to illustrate why these are a few of our favourite things.
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Affiliation(s)
- Zoe Ashbridge
- Department of Chemistry, The University of Manchester, Manchester, UK
| | | | - David A Leigh
- Department of Chemistry, The University of Manchester, Manchester, UK
- School of Chemistry and Molecular Engineering, East China Normal University, 3663 N Zhongshan Road, Shanghai, China
| | - Lucian Pirvu
- Department of Chemistry, The University of Manchester, Manchester, UK
| | | | - Liang Zhang
- Department of Chemistry, The University of Manchester, Manchester, UK
- School of Chemistry and Molecular Engineering, East China Normal University, 3663 N Zhongshan Road, Shanghai, China
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19
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Self-assembly and near-infrared photothermal conversion research of molecular figure-of-eight. J SOLID STATE CHEM 2022. [DOI: 10.1016/j.jssc.2022.123320] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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20
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Ma L, Li Y, Li X, Zhang L, Sun L, Han Y. A Molecular “
A
‐Type” Tangled Metallocube. Angew Chem Int Ed Engl 2022; 61:e202208376. [DOI: 10.1002/anie.202208376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Li‐Li Ma
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Yang Li
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Xin Li
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Le Zhang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Li‐Ying Sun
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
| | - Ying‐Feng Han
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education College of Chemistry and Materials Science Northwest University Xi'an 710127 P. R. China
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21
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Ma LL, Li Y, Li X, Zhang L, Sun LY, Han YF. A Molecular “A‐Type” Tangled Metallocube. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202208376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Li-Li Ma
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Yang Li
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Xin Li
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Le Zhang
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Li-Ying Sun
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 CHINA
| | - Ying-Feng Han
- Northwest University College of Chemistry and Materials Science 1 Xuefu Ave., Guodu Education and Hi-Tech Industries Zone, Chang’an District 710127 Xi'an CHINA
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22
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Chiarantoni P, Micheletti C. Effect of Ring Rigidity on the Statics and Dynamics of Linear Catenanes. Macromolecules 2022. [DOI: 10.1021/acs.macromol.1c02542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Pietro Chiarantoni
- International School for Advanced Studies (SISSA), Via Bonomea 265, 34136 Trieste, Italy
| | - Cristian Micheletti
- International School for Advanced Studies (SISSA), Via Bonomea 265, 34136 Trieste, Italy
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23
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Xu GT, Chang XY, Low KH, Wu LL, Wan Q, Shu HX, To WP, Huang JS, Che CM. Self-Assembly of Molecular Trefoil Knots Featuring Pentadecanuclear Homoleptic Au I -, Au I /Ag I -, or Au I /Cu I -Alkynyl Coordination. Angew Chem Int Ed Engl 2022; 61:e202200748. [PMID: 35183066 DOI: 10.1002/anie.202200748] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Indexed: 12/17/2022]
Abstract
Metal-free and metal-containing molecular trefoil knots are fascinating ensembles that are usually covalently assembled, the latter requiring the rational design of di- or multidentate/multipodal ligands as connectors. In this work, we describe the self-assembly of pentadecanuclear AuI trefoil knots [Au15 (C≡CR)15 ] from monoalkynes HC≡CR (R=9,9-X2 -fluorenyl with X=nBu, n-hexyl) and [AuI (THT)Cl]. Hetero-bimetallic counterparts [Au9 M6 (C≡CR)15 ] (M=Cu/Ag) were self-assembled by reactions of [Au15 (C≡CR)15 ] with [Cu(MeCN)4 ]+ /AgNO3 and HC≡CR. The type of pentadecanuclear trefoil knots described herein is characterized by X-ray crystallography, 2D NMR and HR-ESI-MS. [Au9 Cu6 (C≡CR)15 ] is relatively stable in hexane; its excited state properties were investigated. DFT calculations revealed that non-covalent metal-metal and metal-ligand interactions, together with longer alkyl chain-strengthened inter-ligand dispersion interactions, govern the stability of the trefoil knot structures.
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Affiliation(s)
- Guang-Tao Xu
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Xiao-Yong Chang
- Department of Chemistry, Southern University of Science and Technology, Shenzhen, China
| | - Kam-Hung Low
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Liang-Liang Wu
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Qingyun Wan
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Hui-Xing Shu
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Wai-Pong To
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Jie-Sheng Huang
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
| | - Chi-Ming Che
- State Key Laboratory of Synthetic Chemistry, HKU-CAS Joint Laboratory on New Materials, and Department of Chemistry, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, China
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24
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Dang LL, Li TT, Zhang TT, Zhao Y, Chen T, Gao X, Ma LF, Jin GX. Highly selective synthesis and near-infrared photothermal conversion of metalla-Borromean ring and [2]catenane assemblies. Chem Sci 2022; 13:5130-5140. [PMID: 35655550 PMCID: PMC9093202 DOI: 10.1039/d2sc00437b] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 04/04/2022] [Indexed: 12/17/2022] Open
Abstract
Although the selective synthesis of complicated supramolecular architectures has seen significant progress in recent years, the exploration of the properties of these complexes remains a fascinating challenge. Herein, a series of new supramolecular topologies, metalla[2]catenanes and Borromean ring assemblies, were constructed based on appropriate Cp*Rh building blocks and two rigid alkynyl pyridine ligands (L1, L2) via coordination-driven self-assembly. Interestingly, minor differences between the two rigid alkynyl pyridine ligands with/without organic substituents led to products with dramatically different topologies. Careful structural analysis showed that π–π stacking interactions play a crucial role in stabilizing these [2]catenanes and Borromean ring assemblies, while also promoting nonradiative transitions and triggering photothermal conversion in both the solution and the solid states. These results were showcased through comparative studies of the NIR photothermal conversion efficiencies of the Borromean ring assemblies, [2]catenanes and metallarectangles, which exhibited a wide range of photothermal conversion efficiencies (12.64–72.21%). The influence of the different Cp*Rh building blocks on the NIR photothermal conversion efficiencies of their assemblies was investigated. Good photothermal conversion properties of the assemblies were also found in the solid state. This study provides a new strategy to construct valuable half-sandwich-based NIR photothermal conversion materials while also providing promising candidates for the further development of materials science. The selective synthesis of three kinds of supermolecular topologies, molecular Borromean ring, [2]catenane and metallarectangle based on two alkynyl ligands is presented. Remarkably, the NIR photothermal conversion efficiency was found to improve as the π–π stacking increases.![]()
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Affiliation(s)
- Li-Long Dang
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Henan Province Function-Oriented Porous Materials Key Laboratory Luoyang 471934 P. R. China.,Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials; State Key Laboratory of Molecular Engineering of Polymers, Department of Chemistry, Fudan University Shanghai 200438 P. R. China
| | - Ting-Ting Li
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Henan Province Function-Oriented Porous Materials Key Laboratory Luoyang 471934 P. R. China.,College of Chemistry and Bioengineering (Guangxi Key Laboratory of Electrochemical and Magnetochemical Functional Materials), Guilin University of Technology Guilin 541004 P. R. China
| | - Ting-Ting Zhang
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Henan Province Function-Oriented Porous Materials Key Laboratory Luoyang 471934 P. R. China
| | - Ying Zhao
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Henan Province Function-Oriented Porous Materials Key Laboratory Luoyang 471934 P. R. China
| | - Tian Chen
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Henan Province Function-Oriented Porous Materials Key Laboratory Luoyang 471934 P. R. China
| | - Xiang Gao
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials; State Key Laboratory of Molecular Engineering of Polymers, Department of Chemistry, Fudan University Shanghai 200438 P. R. China
| | - Lu-Fang Ma
- College of Chemistry and Chemical Engineering, Luoyang Normal University, Henan Province Function-Oriented Porous Materials Key Laboratory Luoyang 471934 P. R. China
| | - Guo-Xin Jin
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials; State Key Laboratory of Molecular Engineering of Polymers, Department of Chemistry, Fudan University Shanghai 200438 P. R. China
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25
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Scarpi-Luttenauer M, Mobian P, Barloy L. Synthesis, structure and functions of discrete titanium-based multinuclear architectures. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2022.214439] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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26
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Koehler V, Roy A, Huc I, Ferrand Y. Foldaxanes: Rotaxane-like Architectures from Foldamers. Acc Chem Res 2022; 55:1074-1085. [PMID: 35293719 DOI: 10.1021/acs.accounts.2c00050] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Mechanically interlocked molecules such as rotaxanes and catenanes contain free-moving components that cannot dissociate and have enabled the investigation and control of various translational and rotational molecular motions. The architecture of pseudo-rotaxanes and of some kinetically labile rotaxanes is comparable to that of rotaxanes but their components are reversibly associated and not irreversibly interlocked. In other words, pseudo-rotaxanes may fall apart. This Account focuses on a peculiar family of rotaxane-like architectures termed foldaxanes.Foldaxanes consist of a helically folded oligomer wound around a rod-like dumbbell-shaped guest. Winding of the helix around the rod thus entails an unwinding-rewinding process that creates a kinetic barrier. It follows that foldaxanes, albeit reversibly assembled, have significant lifetimes and may not fall apart while defined molecular motions are triggered. Foldaxanes based on helically folded aromatic oligoamide hosts and oligo(alkyl carbamate) guests can be designed rationally through the inclusion of complementary binding motifs on the rod and at the inner rim of the helix so that helix length and rod length match. Single helical foldaxanes (bimolecular species) and double helical foldaxanes (trimolecular species) have thus been produced as well as poly[n]foldaxanes, in which several helices bind to long rods with multiple binding stations. When the binding stations differ and are organized in a certain sequence, a complementary sequence of different stacked helices, each matching with their binding station, can be assembled, thus reproducing in an artificial system a sort of translation process.Foldaxane helix handedness may be controlled by stereogenic centers on the rod-like guest. Handedness can also be transmitted from helix to helix in polyfoldaxanes. Foldaxane formation has drastic consequences for the rod properties, including its stiffening and the restriction of the mobility of a macrocycle already interlocked on the rod. Fast translation (without dissociation) of helices along rod-like guests has been demonstrated. Because of the helical nature of the hosts, translation may be accompanied by rotation in various sorts of screw-like motions. The possibility, on longer time scales, for the helix to dissociate from and reassociate to the rod has allowed for the design of complex, kinetically controlled supramolecular pathways of a helix on a rod. Furthermore, the design of helices with a directionality, that is, with two distinct termini, that bind to nonsymmetrical rod-like guests in a defined orientation makes it possible to also control the orientation of molecular motion. Altogether, foldaxanes constitute a distinct and full-of-potential family of rotaxane-like architectures that possess designer structures and allow orchestration of the time scales of various supramolecular events.
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Affiliation(s)
- Victor Koehler
- CNRS, Bordeaux Institut National Polytechnique, CBMN (UMR 5248), Université de Bordeaux, Institut Européen de Chimie et Biologie, 2 Rue Escarpit, 33600 Pessac, France
| | - Arundhati Roy
- Department Pharmazie, Ludwig-Maximilians-Universität, Butenandtstraße 5-13, D-81377 München, Germany
| | - Ivan Huc
- Department Pharmazie, Ludwig-Maximilians-Universität, Butenandtstraße 5-13, D-81377 München, Germany
| | - Yann Ferrand
- CNRS, Bordeaux Institut National Polytechnique, CBMN (UMR 5248), Université de Bordeaux, Institut Européen de Chimie et Biologie, 2 Rue Escarpit, 33600 Pessac, France
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27
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Day E, Kauffmann B, Scarpi‐Luttenauer M, Chaumont A, Henry M, Mobian P. An Alternate [2×2] Grid Constructed Around TiO
4
N
2
Units. Chemistry 2022; 28:e202200047. [DOI: 10.1002/chem.202200047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Erin Day
- Laboratoire de Chimie Moléculaire de l'Etat Solide UMR 7140 UDS-CNRS Université de Strasbourg 4 rue Blaise Pascal 67000 Strasbourg France
| | - Brice Kauffmann
- Univ. Bordeaux IECB, UMS 3033/US 001 2 rue Robert Escarpit 33607 Pessac France
| | - Matthieu Scarpi‐Luttenauer
- Laboratoire de Chimie Moléculaire de l'Etat Solide UMR 7140 UDS-CNRS Université de Strasbourg 4 rue Blaise Pascal 67000 Strasbourg France
| | - Alain Chaumont
- Laboratoire de Modélisation et Simulations Moléculaires UMR 7140 UDS-CNRS Université de Strasbourg 4 rue Blaise Pascal 67000 Strasbourg France
| | - Marc Henry
- Laboratoire de Chimie Moléculaire de l'Etat Solide UMR 7140 UDS-CNRS Université de Strasbourg 4 rue Blaise Pascal 67000 Strasbourg France
| | - Pierre Mobian
- Laboratoire de Chimie Moléculaire de l'Etat Solide UMR 7140 UDS-CNRS Université de Strasbourg 4 rue Blaise Pascal 67000 Strasbourg France
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28
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Au-Yeung HY, Deng Y. Distinctive features and challenges in catenane chemistry. Chem Sci 2022; 13:3315-3334. [PMID: 35432874 PMCID: PMC8943846 DOI: 10.1039/d1sc05391d] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Accepted: 02/04/2022] [Indexed: 11/21/2022] Open
Abstract
From being an aesthetic molecular object to a building block for the construction of molecular machines, catenanes and related mechanically interlocked molecules (MIMs) continue to attract immense interest in many research areas. Catenane chemistry is closely tied to that of rotaxanes and knots, and involves concepts like mechanical bonds, chemical topology and co-conformation that are unique to these molecules. Yet, because of their different topological structures and mechanical bond properties, there are some fundamental differences between the chemistry of catenanes and that of rotaxanes and knots although the boundary is sometimes blurred. Clearly distinguishing these differences, in aspects of bonding, structure, synthesis and properties, between catenanes and other MIMs is therefore of fundamental importance to understand their chemistry and explore the new opportunities from mechanical bonds.
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Affiliation(s)
- Ho Yu Au-Yeung
- Department of Chemistry, The University of Hong Kong Pokfulam Road Hong Kong P. R. China
- State Key Laboratory of Synthetic Chemistry, The University of Hong Kong Pokfulam Road Hong Kong P. R. China
| | - Yulin Deng
- Department of Chemistry, The University of Hong Kong Pokfulam Road Hong Kong P. R. China
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29
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Yu H, Shi J, Li M, Pan G, Tong H, Xu B, Wang M, Tian W. Discrete Platinum(II) Metallacycles with Inner- and Outer-Modified 9,10-Distyrylanthracene: Design, Self-Assembly, and Luminescence Properties. Inorg Chem 2022; 61:7231-7237. [PMID: 35234451 DOI: 10.1021/acs.inorgchem.1c03433] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
To completely unravel the relationship between structures and luminescence properties of inner- and outer-modified metallacycles, two rhombic metallacycles S1 and S2 with 9,10-distyrylanthracene (DSA) were constructed herein via the design of DSA moieties on the inside or outside of metallacycles. Similar building blocks of the two metallacycles led to the same emission wavelengths in a dilute solution. In contrast, their fluorescence emissions in the aggregation and solid states were significantly different and revealed interesting emission behaviors from structures with inner- and outer-modified design. Finally, based on their luminescence properties, a tunable solid-state fluorescence emissive material was easily obtained by the mixing of two supramolecules in different ratios. This unique design suggested that the modified position of fluorophores exerts a key impact on the adjustment of luminescence from a dilute solution to the aggregated state and will be of great significance for the development of luminescent materials based on supramolecules.
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Affiliation(s)
- Hao Yu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
| | - Junjuan Shi
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
| | - Meng Li
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
| | - Guocui Pan
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
| | - Hui Tong
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China
| | - Bin Xu
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
| | - Ming Wang
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
| | - Wenjing Tian
- State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun, Jilin 130012, P. R. China
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30
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Xu Y, Su H, Bai Q, Fang F, Ma J, Zhang Z, Hao XQ, Shi J, Wang P, Wang M. Design and Self-Assembly of Macrocycles with Metals at the Corners Based on Dissymmetric Terpyridine Ligands. Chem Asian J 2022; 17:e202200071. [PMID: 35212169 DOI: 10.1002/asia.202200071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2022] [Revised: 02/23/2022] [Indexed: 11/11/2022]
Abstract
Terpyridine-based discrete supramolecular architectures with metal ions in the corners have rarely been reported. Herein, we report two dissymmetric terpyridyl ligands LA and LB decorated at the 5-position and 4-position of terpyridine respectively. The complexes constructed by the self-assembly of LA and LB with Zn(II) exhibit hand-circle-like structures. Moreover, all Zn(II) are successfully fixed in the corners. A series of dimeric to hexameric macrocycles is obtained by head-to-tail connections with changing concentration. This work will pave the way for preparation of more elaborate self-assembled structures based on dissymetric ligands.
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Affiliation(s)
- Yaping Xu
- Jilin University, College of Chemistry, CHINA
| | - Haoyue Su
- Jilin University, College of Chemistry, CHINA
| | - Qixia Bai
- Guangzhou University, Institute of Environmental Research at Greater Bay Area, CHINA
| | - Fang Fang
- Shenzhen University, Instrumental Analysis Center of Shenzhen University, CHINA
| | - Jianjun Ma
- Jilin University, College of Chemistry, CHINA
| | - Zhe Zhang
- Guangzhou University, Institute of Environmental Research at Greater Bay Area, CHINA
| | - Xin-Qi Hao
- Zhengzhou University, College of Chemistry and Green Catalysis Center, CHINA
| | - Junjuan Shi
- Jilin University, College of Chemistry, CHINA
| | - Pingshan Wang
- Guangzhou University, Institute of Environmental Research at Greater Bay Area, CHINA
| | - Ming Wang
- Jilin University, State Key Laboratory of Supramolecular Structure and Materials, No 2699 Qianjin Street, 130012, changhcun, CHINA
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31
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Xu GT, Chang XY, Low KH, Wu LL, Wan Q, Shu HX, To WP, Huang JS, Che CM. Self‐Assembly of Molecular Trefoil Knots Featuring Pentadecanuclear Homoleptic AuI‐, AuI/AgI‐, or AuI/CuI‐Alkynyl Coordination. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
| | - Xiao-Yong Chang
- Southern University of Science and Technology Chemistry CHINA
| | | | | | - Qingyun Wan
- The University of Hong Kong Chemistry HONG KONG
| | | | - Wai-Pong To
- The University of Hong Kong Chemistry HONG KONG
| | | | - Chi-Ming Che
- The University of Hong Kong Pokfulam Road - Hong Kong HONG KONG
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32
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Zhao X, Wang H, Li B, Zhang W, Li X, Zhao W, Janiak C, Heard AW, Yang X, Wu B. A Hydrogen‐Bonded Ravel Assembled by Anion Coordination. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202115042] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Xiaotong Zhao
- College of Chemistry and Materials Science Northwest University Xi'an 710069 China
| | - Heng Wang
- College of Chemistry and Environmental Engineering Shenzhen University Shenzhen 518055 China
| | - Boyang Li
- College of Chemistry and Materials Science Northwest University Xi'an 710069 China
| | - Wenyao Zhang
- College of Chemistry and Materials Science Northwest University Xi'an 710069 China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering Shenzhen University Shenzhen 518055 China
| | - Wei Zhao
- Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology, School of Chemistry and Chemical Engineering Beijing Institute of Technology Beijing 102488 China
| | - Christoph Janiak
- Institut für Anorganische Chemie und Strukturchemie Heinrich-Heine-Universität Düsseldorf 40204 Düsseldorf Germany
| | - Andrew W. Heard
- Department of Chemistry University of Cambridge Cambridge UK
| | - Xiao‐Juan Yang
- Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology, School of Chemistry and Chemical Engineering Beijing Institute of Technology Beijing 102488 China
| | - Biao Wu
- College of Chemistry and Materials Science Northwest University Xi'an 710069 China
- Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology, School of Chemistry and Chemical Engineering Beijing Institute of Technology Beijing 102488 China
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33
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Li Z, Zhang L, Zhou Y, Zha D, Hai Y, You L. Dynamic Covalent Reactions Controlled by Ring‐Chain Tautomerism of 2‐Formylbenzoic Acid. European J Org Chem 2022. [DOI: 10.1002/ejoc.202101461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Ziyi Li
- College of Chemistry and Material Science Fujian Normal University Fuzhou Fujian 350007 China
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Ling Zhang
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Yuntao Zhou
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Daijun Zha
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
| | - Yu Hai
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- University of Chinese Academy of Sciences Beijing 100049 China
| | - Lei You
- State Key Laboratory of Structural Chemistry Fujian Institute of Research on the Structure of Matter Chinese Academy of Sciences Fuzhou Fujian 350002 China
- University of Chinese Academy of Sciences Beijing 100049 China
- Fujian Science & Technology Innovation Laboratory for Optoelectronic Information of China Fuzhou Fujian 350108 China
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34
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Wilson BH, Ward JS, Young DC, Liu J, Mathonière C, Clérac R, Kruger PE. Self‐Assembly Synthesis of a [2]Catenane Co
II
Single‐Molecule Magnet. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202113837] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Benjamin H. Wilson
- MacDiarmid Institute for Advanced Materials and Nanotechnology School of Physical and Chemical Sciences University of Canterbury Private Bag 4800 Christchurch 8041 New Zealand
- Current address Bernal Institute University of Limerick Limerick V94 T9PX Ireland
| | - Jas S. Ward
- MacDiarmid Institute for Advanced Materials and Nanotechnology School of Physical and Chemical Sciences University of Canterbury Private Bag 4800 Christchurch 8041 New Zealand
| | - David C. Young
- MacDiarmid Institute for Advanced Materials and Nanotechnology School of Physical and Chemical Sciences University of Canterbury Private Bag 4800 Christchurch 8041 New Zealand
| | - Jun‐Liang Liu
- Univ. Bordeaux, CNRS, Centre de Recherche Paul Pascal, UMR 5031 33600 Pessac France
| | - Corine Mathonière
- Univ. Bordeaux, CNRS, Centre de Recherche Paul Pascal, UMR 5031 33600 Pessac France
| | - Rodolphe Clérac
- Univ. Bordeaux, CNRS, Centre de Recherche Paul Pascal, UMR 5031 33600 Pessac France
| | - Paul E. Kruger
- MacDiarmid Institute for Advanced Materials and Nanotechnology School of Physical and Chemical Sciences University of Canterbury Private Bag 4800 Christchurch 8041 New Zealand
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35
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Moriya Y, Yamanaka M, Mori K. Synthesis of C3-Symmetric Macrocyclic Triimines from Monomers having Boc-Protected Amine and Formyl Group. CHEM LETT 2022. [DOI: 10.1246/cl.210736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yu Moriya
- Department of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo 184-8588
| | - Masahiro Yamanaka
- Department of Chemistry, Faculty of Science, Rikkyo University, 3-34-1 Nishi-Ikebukuro, Toshima-ku, Tokyo 171-8501, Japan
| | - Keiji Mori
- Department of Applied Chemistry, Graduate School of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Nakacho, Koganei, Tokyo 184-8588
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36
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Fasano F, Bolgar P, Iadevaia G, Hunter CA. Supramolecular template-directed synthesis of triazole oligomers. Chem Sci 2022; 13:13085-13093. [PMID: 36425510 PMCID: PMC9667925 DOI: 10.1039/d2sc04155c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 10/03/2022] [Indexed: 11/17/2022] Open
Abstract
Sandwich complexes formed by two zinc porphyrins and a diamine ligand (DABCO) have been used as a supramolecular template to direct the synthesis of triazole oligomers. Monomer units equipped with two polymerizable functional groups, an alkyne and an azide, were attached to the template via ester bonds between a phenol unit on the monomer and benzoic acid units on the porphyrin. Self-assembly of the zinc porphyrins by addition of DABCO led to a supramolecular complex containing four of the monomer units, two on each porphyrin. CuAAC oligomerisation was carried out in the presence of a chain capping agent to prevent intermolecular reactions between the templated products, which carry reactive chain ends. The templated-directed oligomerisation resulted in selective formation of a duplex, which contains two identical chains of triazole oligomers connecting the porphyrin linkers. The effective molarity for the intramolecular CuAAC reactions on the template is 3–9 mM, and because the triazole backbone has a direction, the product duplex was obtained as a 4 : 1 mixture of the parallel and antiparallel isomers. Hydrolysis of the ester bonds connecting the oligomers to the template gave a single product, the phenol 2-mer, in excellent yield. The introduction of a supramolecular element into the template considerably broadens the scope of the covalent template-directed oligomerisation methodology that we previously developed for the replication of sequence information in synthetic oligomers. A supramolecular metalloporphyrin assembly was used as a disposable template for controlling the oligomerisation of covalently attached monomer building blocks to give a linear oligomeric product that is not accessible via untemplated reactions.![]()
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Affiliation(s)
- Francesco Fasano
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
| | - Peter Bolgar
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
| | - Giulia Iadevaia
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
| | - Christopher A. Hunter
- Yusuf Hamied Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, UK
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37
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McCarney EP, McCarthy WJ, Lovitt JI, Gunnlaugsson T. Macrocyclic vs. [2]catenane btp structures: influence of (aryl) substitution on the self templation of btp ligands in macrocyclic synthesis. Org Biomol Chem 2021; 19:10189-10200. [PMID: 34788352 DOI: 10.1039/d1ob02032c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The synthesis of four 2,6-bis(1,2,3-triazol-4-yl)pyridine (btp) olefin based ligands 3, 4, 11 and 12 is described and their attempted use to form mechanically interlocked molecules using ring closing metatheses (RCM) reactions. The btp ligands were modified in two ways, in 3 and 4 the aryl substitution pattern was changed from 4th position to 3rd position and in the case of 11 and 12, the arms were replaced with aliphatic chains. Our study demonstrates that for all four ligands, the RCM reactions only result in the formation of macrocyclic structures, which in three of the cases, were structurally characterised in both solution (using NMR and HRMS) and in the solid-state using X-ray crystallography. NMR studies were also carried out to investigate if these ligands could preorganise in solution via hydrogen bonding interactions. This study provides a handle of how such precursor substitution can be used to direct the formation of macrocycles or mechanically interlocked structures.
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Affiliation(s)
- Eoin P McCarney
- School of Chemistry and Trinity Biomedical Sciences Institute (TBSI), Trinity College Dublin, The University of Dublin, Dublin 2, Ireland.
| | - William J McCarthy
- School of Chemistry and Trinity Biomedical Sciences Institute (TBSI), Trinity College Dublin, The University of Dublin, Dublin 2, Ireland.
| | - June I Lovitt
- School of Chemistry and Trinity Biomedical Sciences Institute (TBSI), Trinity College Dublin, The University of Dublin, Dublin 2, Ireland. .,SFI Synthesis and Solid State Pharmaceutical Centre (SSPC), Trinity College Dublin, The University of Dublin, Dublin 2, Ireland
| | - Thorfinnur Gunnlaugsson
- School of Chemistry and Trinity Biomedical Sciences Institute (TBSI), Trinity College Dublin, The University of Dublin, Dublin 2, Ireland. .,SFI Synthesis and Solid State Pharmaceutical Centre (SSPC), Trinity College Dublin, The University of Dublin, Dublin 2, Ireland
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38
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Zhao X, Wang H, Li B, Zhang W, Li X, Zhao W, Janiak C, Heard AW, Yang XJ, Wu B. A Hydrogen-Bonded Ravel Assembled by Anion Coordination. Angew Chem Int Ed Engl 2021; 61:e202115042. [PMID: 34850515 DOI: 10.1002/anie.202115042] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Indexed: 11/08/2022]
Abstract
Anion-coordination-driven assembly (ACDA) is showing increasing power in the construction of anionic supramolecular architectures. Herein, by expanding the anion centers from oxoanion (phosphate or sulfate) to organic tris-carboxylates, an Archimedean solid (truncated tetrahedron) and a highly entangled, double-walled tetrahedron featuring a ravel topology have been assembled with tris-bis(urea) ligands. The results demonstrate the promising ability of tris-carboxylates as new anion coordination centers in constructing novel topologies with increasing complexity and diversity compared to phosphate or sulfate ions on account of the modifiable size and easy functionalization character of these organic anions.
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Affiliation(s)
- Xiaotong Zhao
- College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China
| | - Heng Wang
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, 518055, China
| | - Boyang Li
- College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China
| | - Wenyao Zhang
- College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering, Shenzhen University, Shenzhen, 518055, China
| | - Wei Zhao
- Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 102488, China
| | - Christoph Janiak
- Institut für Anorganische Chemie und Strukturchemie, Heinrich-Heine-Universität Düsseldorf, 40204, Düsseldorf, Germany
| | - Andrew W Heard
- Department of Chemistry, University of Cambridge, Cambridge, UK
| | - Xiao-Juan Yang
- Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 102488, China
| | - Biao Wu
- College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China.,Key Laboratory of Medical Molecule Science and Pharmaceutics Engineering, Ministry of Industry and Information Technology, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 102488, China
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39
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Wilson BH, Ward JS, Young DC, Liu JL, Mathonière C, Clérac R, Kruger PE. Self-Assembly Synthesis of a [2]Catenane Co II Single-Molecule Magnet. Angew Chem Int Ed Engl 2021; 61:e202113837. [PMID: 34780082 DOI: 10.1002/anie.202113837] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2021] [Indexed: 11/10/2022]
Abstract
We describe herein the self-assembly synthesis of an octanuclear CoII [2]catenane {[Co4 (H2 L)6 ]2 16+ } formed by the mechanical interlocking of two {[Co4 (H2 L)6 ]8+ } rectangles of unprecedented topology. Subtle manipulation of the synthetic conditions allows the isolation of a mixed-valence [Co2 III /Co2 II ]10+ non-catenated rectangle. The CoII centers in the [2]catenane exhibit slow relaxation of their magnetic moment, i. e. single-molecule magnet properties, dominated by quantum tunneling and Raman relaxation processes. This work shows that metallo-supramolecular chemistry can precisely control the organization of single-molecule magnets in topologically complex arrangements.
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Affiliation(s)
- Benjamin H Wilson
- MacDiarmid Institute for Advanced Materials and Nanotechnology, School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8041, New Zealand.,Bernal Institute, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Jas S Ward
- MacDiarmid Institute for Advanced Materials and Nanotechnology, School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8041, New Zealand
| | - David C Young
- MacDiarmid Institute for Advanced Materials and Nanotechnology, School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8041, New Zealand
| | - Jun-Liang Liu
- Univ. Bordeaux, CNRS, Centre de Recherche Paul Pascal, UMR 5031, 33600, Pessac, France
| | - Corine Mathonière
- Univ. Bordeaux, CNRS, Centre de Recherche Paul Pascal, UMR 5031, 33600, Pessac, France
| | - Rodolphe Clérac
- Univ. Bordeaux, CNRS, Centre de Recherche Paul Pascal, UMR 5031, 33600, Pessac, France
| | - Paul E Kruger
- MacDiarmid Institute for Advanced Materials and Nanotechnology, School of Physical and Chemical Sciences, University of Canterbury, Private Bag 4800, Christchurch, 8041, New Zealand
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40
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Scarpi-Luttenauer M, Kyritsakas N, Chaumont A, Mobian P. Chemistry on the Complex: Derivatization of TiO 4 N 2 -Based Complexes and Application to Multi-Step Synthesis. Chemistry 2021; 27:17910-17920. [PMID: 34767287 DOI: 10.1002/chem.202103235] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2021] [Indexed: 01/15/2023]
Abstract
The chemistry on octahedral TiO4 N2 -complexes is described. The Ti(IV)-based precursors are composed of two 3,3'-diphenyl-2,2'-biphenolato ligands (1) and one substituted 1,10-phenanthroline ligand (2-5). The application of imine condensation, palladium-catalyzed C-C bond formation or copper-catalysed azide-alkyne cycloaddition allowed the grafting of various new groups onto these species. In particular Sonogashira reactions permitted to observe an excellent conversion of the starting complexes. This systematic study enabled to compile the factors required to preserve the framework of the complexes in the course of a chemical transformation. Thanks to this chemistry realized on the complex, the Ti(1)2 fragment was used as a protecting group to develop a multi-step synthesis of a bis-phenanthroline compound (12), for which the synthesis without this protection failed. Thus, a dinuclear complex [Ti2 (1)4 (12)] was first prepared starting from complex precursor bearing an acetylenic function via a Hay coupling reaction. This was followed by a deprotection step affording 12. Overall, this work illustrates how the Ti(1)2 fragment could be an useful tool for the preparation of unprecedented diimine compounds.
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Affiliation(s)
- Matthieu Scarpi-Luttenauer
- Laboratoire de Synthèse et fonctions des Architectures Moléculaires, Université de Strasbourg, CNRS, CMC UMR 7140, 67000, Strasbourg, France
| | - Nathalie Kyritsakas
- Laboratoire de Tectonique Moléculaire, Université de Strasbourg, CNRS, CMC UMR 7140, 67000, Strasbourg, France
| | - Alain Chaumont
- Laboratoire de Modélisation et Simulations Moléculaires, Université de Strasbourg, CNRS, CMC UMR 7140, 67000, Strasbourg, France
| | - Pierre Mobian
- Laboratoire de Synthèse et fonctions des Architectures Moléculaires, Université de Strasbourg, CNRS, CMC UMR 7140, 67000, Strasbourg, France
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41
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Ross DW, Findlay JA, Vasdev RAS, Crowley JD. Can 2-Pyridyl-1,2,3-triazole "Click" Ligands be Used to Develop Cu(I)/Cu(II) Molecular Switches? ACS OMEGA 2021; 6:30115-30129. [PMID: 34778683 PMCID: PMC8582268 DOI: 10.1021/acsomega.1c04977] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 10/15/2021] [Indexed: 06/13/2023]
Abstract
Molecular switching processes are important in a range of areas including the development of molecular machines. While there are numerous organic switching systems available, there are far less examples that exploit inorganic materials. The most common inorganic switching system remains the copper(I)/copper(II) switch developed by Sauvage and co-workers over 20 years ago. Herein, we examine if bidentate 2-(1-benzyl-1H-1,2,3-triazol-4-yl)pyridine (pytri) and tridentate 2,6-bis[(4-phenyl-1H-1,2,3-triazol-1-yl)methyl]pyridine (tripy) moieties can be used to replace the more commonly exploited polypyridyl ligands 2,2'-bypyridine (bpy)/1,10-phenanthroline (phen) and 2,2';6',2″-terpyridine (terpy) in a copper(I)/(II) switching system. Two new ditopic ligands that feature bidentate (pytri, L1 or bpytri, L2) and tridentate tripy metal binding pockets were synthesized and used to generate a family of heteroleptic copper(I) and copper(II) 6,6'-dimesityl-2,2'-bipyridine (diMesbpy) complexes. Additionally, we synthesized a series of model copper(I) and copper(II) diMesbpy complexes. A combination of techniques including nuclear magnetic resonance (NMR) and UV-vis spectroscopies, high-resolution electrospray ionization mass spectrometry, and X-ray crystallography was used to examine the behavior of the compounds. It was found that L1 and L2 formed [(diMesbpy)Cu(L1 or L2)]2+ complexes where the copper(II) diMesbpy unit was coordinated exclusively in the tridenate tripy binding site. However, when the ligands (L1 and L2) were complexed with copper(I) diMesbpy units, a complex mixture was obtained. NMR and MS data indicated that a 1:1 stoichiometry of [Cu(diMesbpy)]+ and either L1 or L2 generated three complexes in solution, the dimetallic [(diMesbpy)2Cu2(L1 or L2)]2+ and the monometallic [(diMesbpy)Cu(L1 or L2)]+ isomers where the [Cu(diMesbpy)]+ unit is coordinated to either the bidentate or tridentate tripy binding sites of the ditopic ligands. The dimetallic [(diMesbpy)2Cu2(L1 or L2)](PF6)2 complexes were structurally characterized using X-ray crystallography. Both complexes feature a [Cu(diMesbpy)]+ coordinated to the bidentate (pytri or bpytri) pocket of the ditopic ligands (L1 or L2), as expected. They also feature a second [Cu(diMesbpy)]+ coordinated to the nominally tridentate tripy binding site in a four-coordinate hypodentate κ2-fashion. Competition experiments with model complexes showed that the binding strength of the bidentate pytri is similar to that of the κ2-tripy ligand, leading to the lack of selectivity. The results suggest that the pytri/tripy and bpytri/tripy ligand pairs cannot be used as replacements for the more common bpy/phen-terpy partners due to the lack of selectivity in the copper(I) state.
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Affiliation(s)
- Daniel
A. W. Ross
- Department
of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand
| | - James A. Findlay
- Department
of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand
| | - Roan A. S. Vasdev
- Department
of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand
| | - James D. Crowley
- Department
of Chemistry, University of Otago, P.O. Box 56, Dunedin 9054, New Zealand
- MacDiarmid
Institute for Advanced Materials and Nanotechnology, Wellington 6140, New Zealand
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Rusková R, Račko D. Channels with Helical Modulation Display Stereospecific Sensitivity for Chiral Superstructures. Polymers (Basel) 2021; 13:3726. [PMID: 34771282 PMCID: PMC8588256 DOI: 10.3390/polym13213726] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 10/23/2021] [Accepted: 10/23/2021] [Indexed: 01/03/2023] Open
Abstract
By means of coarse-grained molecular dynamics simulations, we explore chiral sensitivity of confining spaces modelled as helical channels to chiral superstructures represented by polymer knots. The simulations show that helical channels exhibit stereosensitivity to chiral knots localized on linear chains by effect of external pulling force and also to knots embedded on circular chains. The magnitude of the stereoselective effect is stronger for torus knots, the effect is weaker in the case of twist knots, and amphichiral knots do exhibit no chiral effects. The magnitude of the effect can be tuned by the so-far investigated radius of the helix, the pitch of the helix and the strength of the pulling force. The model is aimed to simulate and address a range of practical situations that may occur in experimental settings such as designing of nanotechnological devices for the detection of topological state of molecules, preparation of new gels with tailor made stereoselective properties, or diffusion of knotted DNA in biological conditions.
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Affiliation(s)
- Renáta Rusková
- Polymer Institute, Slovak Academy of Sciences, Dúbravská Cesta 3, 84541 Bratislava, Slovakia;
- Department of Plastics, Rubber and Fibres (IPM FCFT), Faculty of Chemical and Food Technology, Slovak University of Technology, Radlinského 9, 81237 Bratislava, Slovakia
| | - Dušan Račko
- Polymer Institute, Slovak Academy of Sciences, Dúbravská Cesta 3, 84541 Bratislava, Slovakia;
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Orlandini E, Micheletti C. Topological and physical links in soft matter systems. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2021; 34:013002. [PMID: 34547745 DOI: 10.1088/1361-648x/ac28bf] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/16/2021] [Accepted: 09/21/2021] [Indexed: 06/13/2023]
Abstract
Linking, or multicomponent topological entanglement, is ubiquitous in soft matter systems, from mixtures of polymers and DNA filaments packedin vivoto interlocked line defects in liquid crystals and intertwined synthetic molecules. Yet, it is only relatively recently that theoretical and experimental advancements have made it possible to probe such entanglements and elucidate their impact on the physical properties of the systems. Here, we review the state-of-the-art of this rapidly expanding subject and organize it as follows. First, we present the main concepts and notions, from topological linking to physical linking and then consider the salient manifestations of molecular linking, from synthetic to biological ones. We next cover the main physical models addressing mutual entanglements in mixtures of polymers, both linear and circular. Finally, we consider liquid crystals, fluids and other non-filamentous systems where topological or physical entanglements are observed in defect or flux lines. We conclude with a perspective on open challenges.
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Affiliation(s)
- Enzo Orlandini
- Department of Physics and Astronomy, University of Padova and Sezione INFN, Via Marzolo 8, Padova, Italy
| | - Cristian Micheletti
- SISSA, International School for Advanced Studies, via Bonomea 265, Trieste, Italy
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O'Keeffe M, Treacy MMJ. Piecewise-linear embeddings of knots and links with rotoinversion symmetry. Acta Crystallogr A Found Adv 2021; 77:392-398. [PMID: 34473094 DOI: 10.1107/s2053273321006136] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Accepted: 06/11/2021] [Indexed: 11/10/2022] Open
Abstract
This article describes the simplest members of an infinite family of knots and links that have achiral piecewise-linear embeddings in which linear segments (sticks) meet at corners. The structures described are all corner- and stick-2-transitive - the smallest possible for achiral knots.
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Affiliation(s)
- Michael O'Keeffe
- School of Molecular Sciences, Arizona State University, Tempe, Arizona 85287, USA
| | - Michael M J Treacy
- Department of Physics, Arizona State University, Tempe, Arizona 85287, USA
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Dabrowski-Tumanski P, Rubach P, Niemyska W, Gren BA, Sulkowska JI. Topoly: Python package to analyze topology of polymers. Brief Bioinform 2021; 22:bbaa196. [PMID: 32935829 PMCID: PMC8138882 DOI: 10.1093/bib/bbaa196] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2020] [Revised: 07/15/2020] [Accepted: 07/29/2020] [Indexed: 12/27/2022] Open
Abstract
The increasing role of topology in (bio)physical properties of matter creates a need for an efficient method of detecting the topology of a (bio)polymer. However, the existing tools allow one to classify only the simplest knots and cannot be used in automated sample analysis. To answer this need, we created the Topoly Python package. This package enables the distinguishing of knots, slipknots, links and spatial graphs through the calculation of different topological polynomial invariants. It also enables one to create the minimal spanning surface on a given loop, e.g. to detect a lasso motif or to generate random closed polymers. It is capable of reading various file formats, including PDB. The extensive documentation along with test cases and the simplicity of the Python programming language make it a very simple to use yet powerful tool, suitable even for inexperienced users. Topoly can be obtained from https://topoly.cent.uw.edu.pl.
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Affiliation(s)
| | | | | | | | - Joanna Ida Sulkowska
- Corresponding author: Joanna Ida Sulkowska, Centre of New Technologies, University of Warsaw, Warsaw, 02-097, Poland; Faculty of Chemistry, University of Warsaw, 02-093, Warsaw, Poland. Tel.: +48-22-55-43678 E-mail:
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Núñez-Villanueva D, Hunter CA. Replication of Sequence Information in Synthetic Oligomers. Acc Chem Res 2021; 54:1298-1306. [PMID: 33554599 PMCID: PMC7931443 DOI: 10.1021/acs.accounts.0c00852] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Indexed: 12/12/2022]
Abstract
The holy grail identified by Orgel in his 1995 Account was the development of novel chemical systems that evolve using reactions in which replication and information transfer occur together. There has been some success in the adaption of nucleic acids to make artificial analogues and in templating oligomerization reactions to form synthetic homopolymers, but replication of sequence information in synthetic polymers remains a major unsolved problem. In this Account, we describe our efforts in this direction based on a covalent base-pairing strategy to transfer sequence information between a parent template and a daughter copy. Oligotriazoles, which carry information as a sequence of phenol and benzoic acid side chains, have been prepared from bifunctional monomers equipped with an azide and an alkyne. Formation of esters between phenols and benzoic acids is used as the equivalent of nucleic base pairing to covalently attach monomer building blocks to a template oligomer. Sequential protection of the phenol side chains on the template, ester coupling of the benzoic acid side chains, and deprotection and ester coupling of the phenol side chains allow quantitative selective base-pair formation on a mixed sequence template. Copper catalyzed azide alkyne cycloaddition (CuAAC) is then used to oligomerize the monomers on the template. Finally, cleavage of the ester base pairs in the product duplex by hydrolysis releases the copy strand. This covalent template-directed synthesis strategy has been successfully used to copy the information encoded in a trimer template into a sequence-complementary oligomer in high yield.The use of covalent base pairing provides opportunities to manipulate the nature of the information transferred in the replication process. By using traceless linkers to connect the phenol and benzoic acid units, it is possible to carry out direct replication, reciprocal replication, and mutation. These preliminary results are promising, and methods have been developed to eliminate some of the side reactions that compete with the CuAAC process that zips up the duplex. In situ end-capping of the copy strand was found to be an effective general method for blocking intermolecular reactions between product duplexes. By selecting an appropriate concentration of an external capping agent, it is also possible to intercept macrocyclization of the reactive chain ends in the product duplex. The other side reaction observed is miscoupling of monomer units that are not attached to adjacent sites on the template, and optimization is required to eliminate these reactions. We are still some way from an evolvable synthetic polymer, but the chemical approach to molecular replication outlined here has some promise.
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Affiliation(s)
- Diego Núñez-Villanueva
- Yusuf Hamied Department of
Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
| | - Christopher A. Hunter
- Yusuf Hamied Department of
Chemistry, University of Cambridge, Lensfield Road, Cambridge CB2 1EW, U.K.
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Liu D, Li K, Chen M, Zhang T, Li Z, Yin JF, He L, Wang J, Yin P, Chan YT, Wang P. Russian-Doll-Like Molecular Cubes. J Am Chem Soc 2021; 143:2537-2544. [PMID: 33378184 DOI: 10.1021/jacs.0c11703] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Nanosized cage-within-cage compounds represent a synergistic molecular self-assembling form of three-dimensional architecture that has received particular research focus. Building multilayered ultralarge cages to simulate complicated virus capsids is believed to be a tough synthetic challenge. Here, we synthesize two large double-shell supramolecular cages by facile self-assembly of presynthesized metal-organic hexatopic terpyridine ligands with metal ions. Differing from the mixture of prisms formed from the inner tritopic ligand, the redesigned metal-organic hexatopic ligands bearing high geometric constraints that led to the exclusive formation of discrete double-shell structures. These two unique nested cages are composed of inner cubes (5.1 nm) and outer huge truncated cubes (12.0 and 13.2 nm) with six large bowl-shape subcages distributed on six faces. The results with molecular weights of 75 232 and 77 667 Da were among the largest synthetic cage-in-cage supramolecules reported to date. The composition, size and shape were unambiguously characterized by a combination of 1H NMR, DOSY, ESI-MS, TWIM-MS, TEM, AFM, and SAXS. This work provides an interesting model for functional recognition, delivery, and detection of various guest molecules in the field of supramolecular materials.
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Affiliation(s)
- Die Liu
- Institute of Environmental Research at Greater Bay Area; Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education; Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University, Guangzhou 510006, China
| | - Kaixiu Li
- Department of Organic and Polymer Chemistry; Hunan Key Laboratory of Micro & Nano Materials Interface Science; College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan 410083, China
| | - Mingzhao Chen
- Institute of Environmental Research at Greater Bay Area; Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education; Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University, Guangzhou 510006, China
| | - Tingting Zhang
- Institute of Environmental Research at Greater Bay Area; Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education; Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University, Guangzhou 510006, China
| | - Zhengguang Li
- Department of Organic and Polymer Chemistry; Hunan Key Laboratory of Micro & Nano Materials Interface Science; College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan 410083, China
| | - Jia-Fu Yin
- South China Advanced Institute for Soft Matter Science and Technology & State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou 510640, China
| | - Lipeng He
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan
| | - Jun Wang
- Department of Organic and Polymer Chemistry; Hunan Key Laboratory of Micro & Nano Materials Interface Science; College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan 410083, China
| | - Panchao Yin
- South China Advanced Institute for Soft Matter Science and Technology & State Key Laboratory of Luminescent Materials and Devices, South China University of Technology, Guangzhou 510640, China
| | - Yi-Tsu Chan
- Department of Chemistry, National Taiwan University, Taipei 10617, Taiwan
| | - Pingshan Wang
- Institute of Environmental Research at Greater Bay Area; Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education; Guangzhou Key Laboratory for Clean Energy and Materials, Guangzhou University, Guangzhou 510006, China.,Department of Organic and Polymer Chemistry; Hunan Key Laboratory of Micro & Nano Materials Interface Science; College of Chemistry and Chemical Engineering, Central South University, Changsha, Hunan 410083, China
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Leigh DA, Danon JJ, Fielden SDP, Lemonnier JF, Whitehead GFS, Woltering SL. A molecular endless (7 4) knot. Nat Chem 2021; 13:117-122. [PMID: 33318672 DOI: 10.1038/s41557-020-00594-x] [Citation(s) in RCA: 62] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Accepted: 10/23/2020] [Indexed: 01/30/2023]
Abstract
Current strategies for the synthesis of molecular knots focus on twisting, folding and/or threading molecular building blocks. Here we report that Zn(II) or Fe(II) ions can be used to weave ligand strands to form a woven 3 × 3 molecular grid. We found that the process requires tetrafluoroborate anions to template the assembly of the interwoven grid by binding within the square cavities formed between the metal-coordinated criss-crossed ligands. The strand ends of the grid can subsequently be joined through within-grid alkene metathesis reactions to form a topologically trivial macrocycle (unknot), a doubly interlocked [2]catenane (Solomon link) and a knot with seven crossings in a 258-atom-long closed loop. This 74 knot topology corresponds to that of an endless knot, which is a basic motif of Celtic interlace, the smallest Chinese knot and one of the eight auspicious symbols of Buddhism and Hinduism. The weaving of molecular strands within a discrete layer by anion-template metal-ion coordination opens the way for the synthesis of other molecular knot topologies and to woven polymer materials.
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Affiliation(s)
- David A Leigh
- School of Chemistry and Molecular Engineering, East China Normal University, Shanghai, China. .,Department of Chemistry, University of Manchester, Manchester, UK.
| | - Jonathan J Danon
- Department of Chemistry, University of Manchester, Manchester, UK
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Non‐Covalent Interaction‐Directed Coordination‐Driven Self‐Assembly of Non‐Trivial Supramolecular Topologies. CHEM REC 2021; 21:574-593. [DOI: 10.1002/tcr.202000155] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2020] [Revised: 12/22/2020] [Accepted: 01/11/2021] [Indexed: 11/07/2022]
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