1
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Chang CW, Lin MH, Chiang TY, Wu CH, Lin TC, Wang CC. Unraveling the promoter effect and the roles of counterion exchange in glycosylation reaction. SCIENCE ADVANCES 2023; 9:eadk0531. [PMID: 37851803 PMCID: PMC10584349 DOI: 10.1126/sciadv.adk0531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2023] [Accepted: 09/14/2023] [Indexed: 10/20/2023]
Abstract
The stereoselectivity of glycosidic bond formation continues to pose a noteworthy hurdle in synthesizing carbohydrates, primarily due to the simultaneous occurrence of SN1 and SN2 processes during the glycosylation reaction. Here, we applied an in-depth analysis of the glycosylation mechanism by using low-temperature nuclear magnetic resonance and statistical approaches. A pathway driven by counterion exchanges and reaction byproducts was first discovered to outline the stereocontributions of intermediates. Moreover, the relative reactivity values, acceptor nucleophilic constants, and Hammett substituent constants (σ values) provided a general index to indicate the mechanistic pathways. These results could allow building block tailoring and reaction condition optimization in carbohydrate synthesis to be greatly facilitated and simplified.
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Affiliation(s)
- Chun-Wei Chang
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
| | - Mei-Huei Lin
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
| | - Tsun-Yi Chiang
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
| | - Chia-Hui Wu
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
| | - Tzu-Chun Lin
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
| | - Cheng-Chung Wang
- Institute of Chemistry, Academia Sinica, Taipei 115, Taiwan
- Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program (TIGP), Academia Sinica, Taipei 115, Taiwan
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2
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Liang Y, Laporte AG, Bodlenner A, Compain P. Stereoselective Synthesis of Glycosyl Cyanides by TMSOTf‐Mediated Ring Opening of 1,6‐Anhydro Sugars. European J Org Chem 2023. [DOI: 10.1002/ejoc.202201311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Yan Liang
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
| | - Adrien G. Laporte
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
| | - Anne Bodlenner
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
| | - Philippe Compain
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
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3
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Sasaki K, Uesaki N. Conformationally restricted donors for stereoselective glycosylation. Adv Carbohydr Chem Biochem 2022; 82:107-155. [PMID: 36470647 DOI: 10.1016/bs.accb.2022.10.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
In nucleophilic reactions using sugars as electrophiles, i.e., glycosyl donors, their conformation affects the generation rate or stability of the glycosyl cation intermediates and determines at which side of the SN2-SN1 borderline and at what rate the reaction occurs. In addition, changes in the conformation create the steric or stereoelectronic effects of the substituents, which also change the reaction rate and stereoselectivity. Bulky silyl protecting groups, uronic acid esters, and transannular structures have been utilized to change the conformation. Consequently, reactions with unique reactivities and stereoselectivities have been developed. In this chapter, a discussion of the reaction mechanisms relating stereoselectivity to conformation is provided.
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Affiliation(s)
- Kaname Sasaki
- Department of Chemistry, Toho University, Funabashi, Japan.
| | - Nanako Uesaki
- Department of Chemistry, Toho University, Funabashi, Japan
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4
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Huang BB, Zhao YL, Lei K, Zhong LR, Yang X, Yao ZJ. Enantioselective Total Synthesis of (+)-Sieboldine A and Analogues Thereof. Org Lett 2022; 24:7517-7521. [PMID: 36214606 DOI: 10.1021/acs.orglett.2c02737] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An 11-step enantioselective total synthesis of (+)-sieboldine A (1) has been accomplished from (5R)-methylcyclohex-2-en-1-one (16), in which an intramolecular ketone/ester reductive coupling followed by one-pot acidic treatment to quickly construct the unique oxa-spiroacetal and a TsOH-catalyzed displacement to directly form the characteristic N-hydroxyazacyclononane ring successfully served as the key methodologies. Moreover, several full-skeleton analogues of 1 were also synthesized on the basis of the advanced intermediates, and their inhibitory effects on electric eel acetylcholinesterase were examined.
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Affiliation(s)
- Bing-Bing Huang
- State Key Laboratory of Coordination Chemistry and Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Yi-Lu Zhao
- State Key Laboratory of Coordination Chemistry and Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Kaiyu Lei
- State Key Laboratory of Coordination Chemistry and Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Lin-Rui Zhong
- State Key Laboratory of Coordination Chemistry and Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Xiaoliang Yang
- State Key Laboratory of Coordination Chemistry and Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
| | - Zhu-Jun Yao
- State Key Laboratory of Coordination Chemistry and Jiangsu Key Laboratory of Advanced Organic Materials, School of Chemistry and Chemical Engineering, Nanjing University, 163 Xianlin Avenue, Nanjing, Jiangsu 210023, China
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5
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Liu H, Laporte AG, Tardieu D, Hazelard D, Compain P. Formal Glycosylation of Quinones with exo-Glycals Enabled by Iron-Mediated Oxidative Radical-Polar Crossover. J Org Chem 2022; 87:13178-13194. [PMID: 36095170 DOI: 10.1021/acs.joc.2c01635] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The intermolecular C-O coupling reaction of 1,4-quinones with exo-glycals under iron hydride hydrogen atom transfer (HAT) conditions is described. This method provides a direct and regioselective access to a wide range of phenolic O-ketosides related to biologically relevant natural products in diastereomeric ratios up to >98:2 in the furanose and pyranose series. No trace of the corresponding C-glycosylated products that might have resulted from the radical alkylation of 1,4-quinones was observed. The results of mechanistic experiments suggest that the key C-O bond-forming event proceeds through an oxidative radical-polar crossover process involving a single-electron transfer between the HAT-generated glycosyl radical and the electron-acceptor quinone.
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Affiliation(s)
- Haijuan Liu
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France
| | - Adrien G Laporte
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France
| | - Damien Tardieu
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France
| | - Damien Hazelard
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France
| | - Philippe Compain
- Laboratoire d'Innovation Moléculaire et Applications (LIMA), Univ. de Strasbourg
- Univ. de Haute-Alsace
- CNRS (UMR 7042), Equipe de Synthèse Organique et Molécules Bioactives (SYBIO), ECPM, 25 Rue Becquerel, 67000 Strasbourg, France
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6
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Kawanobe Y, Kuragaki N, Tsubomura T, Yamazaki Y, Kuribara T, Totani K. Mechanistic Study of Silyl‐Assist Effect on 1,2‐
cis
‐α‐Glucosylation. ChemistrySelect 2022. [DOI: 10.1002/slct.202104152] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Yuichi Kawanobe
- Department of Materials and Life Science Seikei University 3-3-1 Kichijoji-kitamachi Musashino-shi Tokyo 180-8633 Japan
| | - Naoya Kuragaki
- Department of Materials and Life Science Seikei University 3-3-1 Kichijoji-kitamachi Musashino-shi Tokyo 180-8633 Japan
| | - Taro Tsubomura
- Department of Materials and Life Science Seikei University 3-3-1 Kichijoji-kitamachi Musashino-shi Tokyo 180-8633 Japan
| | - Yasuomi Yamazaki
- Department of Materials and Life Science Seikei University 3-3-1 Kichijoji-kitamachi Musashino-shi Tokyo 180-8633 Japan
| | - Taiki Kuribara
- Department of Materials and Life Science Seikei University 3-3-1 Kichijoji-kitamachi Musashino-shi Tokyo 180-8633 Japan
| | - Kiichiro Totani
- Department of Materials and Life Science Seikei University 3-3-1 Kichijoji-kitamachi Musashino-shi Tokyo 180-8633 Japan
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7
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Alabugin IV, Kuhn L, Medvedev MG, Krivoshchapov NV, Vil' VA, Yaremenko IA, Mehaffy P, Yarie M, Terent'ev AO, Zolfigol MA. Stereoelectronic power of oxygen in control of chemical reactivity: the anomeric effect is not alone. Chem Soc Rev 2021; 50:10253-10345. [PMID: 34263287 DOI: 10.1039/d1cs00386k] [Citation(s) in RCA: 66] [Impact Index Per Article: 22.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
Although carbon is the central element of organic chemistry, oxygen is the central element of stereoelectronic control in organic chemistry. Generally, a molecule with a C-O bond has both a strong donor (a lone pair) and a strong acceptor (e.g., a σ*C-O orbital), a combination that provides opportunities to influence chemical transformations at both ends of the electron demand spectrum. Oxygen is a stereoelectronic chameleon that adapts to the varying situations in radical, cationic, anionic, and metal-mediated transformations. Arguably, the most historically important stereoelectronic effect is the anomeric effect (AE), i.e., the axial preference of acceptor groups at the anomeric position of sugars. Although AE is generally attributed to hyperconjugative interactions of σ-acceptors with a lone pair at oxygen (negative hyperconjugation), recent literature reports suggested alternative explanations. In this context, it is timely to evaluate the fundamental connections between the AE and a broad variety of O-functional groups. Such connections illustrate the general role of hyperconjugation with oxygen lone pairs in reactivity. Lessons from the AE can be used as the conceptual framework for organizing disjointed observations into a logical body of knowledge. In contrast, neglect of hyperconjugation can be deeply misleading as it removes the stereoelectronic cornerstone on which, as we show in this review, the chemistry of organic oxygen functionalities is largely based. As negative hyperconjugation releases the "underutilized" stereoelectronic power of unshared electrons (the lone pairs) for the stabilization of a developing positive charge, the role of orbital interactions increases when the electronic demand is high and molecules distort from their equilibrium geometries. From this perspective, hyperconjugative anomeric interactions play a unique role in guiding reaction design. In this manuscript, we discuss the reactivity of organic O-functionalities, outline variations in the possible hyperconjugative patterns, and showcase the vast implications of AE for the structure and reactivity. On our journey through a variety of O-containing organic functional groups, from textbook to exotic, we will illustrate how this knowledge can predict chemical reactivity and unlock new useful synthetic transformations.
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Affiliation(s)
- Igor V Alabugin
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA.
| | - Leah Kuhn
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA.
| | - Michael G Medvedev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russian Federation.,A. N. Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilova St., 119991 Moscow, Russian Federation
| | - Nikolai V Krivoshchapov
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russian Federation.,Lomonosov Moscow State University, Leninskie Gory 1 (3), Moscow, 119991, Russian Federation
| | - Vera A Vil'
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russian Federation
| | - Ivan A Yaremenko
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russian Federation
| | - Patricia Mehaffy
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL 32306, USA.
| | - Meysam Yarie
- Department of Organic Chemistry, Faculty of Chemistry, Bu-Ali Sina University, Hamedan 65167, Iran
| | - Alexander O Terent'ev
- N. D. Zelinsky Institute of Organic Chemistry, Russian Academy of Sciences, 47 Leninsky prosp., 119991 Moscow, Russian Federation
| | - Mohammad Ali Zolfigol
- Department of Organic Chemistry, Faculty of Chemistry, Bu-Ali Sina University, Hamedan 65167, Iran
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8
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Hazelard D, Compain P. Nucleophilic Ring‐Opening of 1,6‐Anhydrosugars: Recent Advances and Applications in Organic Synthesis. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100403] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Damien Hazelard
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg Univ. de Haute-Alsace CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
| | - Philippe Compain
- Laboratoire d'Innovation Moléculaire et Applications (LIMA) Univ. de Strasbourg Univ. de Haute-Alsace CNRS (UMR 7042) Equipe de Synthèse Organique et Molécules Bioactives (SYBIO) ECPM 25 Rue Becquerel 67000 Strasbourg France
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9
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Franconetti A, Ardá A, Asensio JL, Blériot Y, Thibaudeau S, Jiménez-Barbero J. Glycosyl Oxocarbenium Ions: Structure, Conformation, Reactivity, and Interactions. Acc Chem Res 2021; 54:2552-2564. [PMID: 33930267 PMCID: PMC8173606 DOI: 10.1021/acs.accounts.1c00021] [Citation(s) in RCA: 37] [Impact Index Per Article: 12.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Indexed: 12/13/2022]
Abstract
Carbohydrates (glycans, saccharides, and sugars) are essential molecules in all domains of life. Research on glycoscience spans from chemistry to biomedicine, including material science and biotechnology. Access to pure and well-defined complex glycans using synthetic methods depends on the success of the employed glycosylation reaction. In most cases, the mechanism of the glycosylation reaction is believed to involve the oxocarbenium ion. Understanding the structure, conformation, reactivity, and interactions of this glycosyl cation is essential to predict the outcome of the reaction. In this Account, building on our contributions on this topic, we discuss the theoretical and experimental approaches that have been employed to decipher the key features of glycosyl cations, from their structures to their interactions and reactivity.We also highlight that, from a chemical perspective, the glycosylation reaction can be described as a continuum, from unimolecular SN1 with naked oxocarbenium cations as intermediates to bimolecular SN2-type mechanisms, which involve the key role of counterions and donors. All these factors should be considered and are discussed herein. The importance of dissociative mechanisms (involving contact ion pairs, solvent-separated ion pairs, solvent-equilibrated ion pairs) with bimolecular features in most reactions is also highlighted.The role of theoretical calculations to predict the conformation, dynamics, and reactivity of the oxocarbenium ion is also discussed, highlighting the advances in this field that now allow access to the conformational preferences of a variety of oxocarbenium ions and their reactivities under SN1-like conditions.Specifically, the ground-breaking use of superacids to generate these cations is emphasized, since it has permitted characterization of the structure and conformation of a variety of glycosyl oxocarbenium ions in superacid solution by NMR spectroscopy.We also pay special attention to the reactivity of these glycosyl ions, which depends on the conditions, including the counterions, the possible intra- or intermolecular participation of functional groups that may stabilize the cation and the chemical nature of the acceptor, either weak or strong nucleophile. We discuss recent investigations from different experimental perspectives, which identified the involved ionic intermediates, estimating their lifetimes and reactivities and studying their interactions with other molecules. In this context, we also emphasize the relationship between the chemical methods that can be employed to modulate the sensitivity of glycosyl cations and the way in which glycosyl modifying enzymes (glycosyl hydrolases and transferases) build and cleave glycosidic linkages in nature. This comparison provides inspiration on the use of molecules that regulate the stability and reactivity of glycosyl cations.
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Affiliation(s)
- Antonio Franconetti
- CIC
bioGUNE, Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Building
800, 48160 Derio, Spain
| | - Ana Ardá
- CIC
bioGUNE, Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Building
800, 48160 Derio, Spain
- lkerbasque,
Basque Foundation for Science, Maria Diaz de Haro 13, 48009 Bilbao, Spain
| | - Juan Luis Asensio
- Instituto
de Química Orgánica (IQOG-CSIC), Juan de la Cierva 3, 28006 Madrid, Spain
| | - Yves Blériot
- Université
de Poitiers, IC2MP, UMR CNRS
7285, Equipe “OrgaSynth”, 4 rue Michel Brunet, 86073 cedex 9 Poitiers, France
| | - Sébastien Thibaudeau
- Université
de Poitiers, IC2MP, UMR CNRS
7285, Equipe “OrgaSynth”, 4 rue Michel Brunet, 86073 cedex 9 Poitiers, France
| | - Jesús Jiménez-Barbero
- CIC
bioGUNE, Basque Research and Technology Alliance (BRTA), Bizkaia Technology Park, Building
800, 48160 Derio, Spain
- lkerbasque,
Basque Foundation for Science, Maria Diaz de Haro 13, 48009 Bilbao, Spain
- Department
of Organic Chemistry II, Faculty of Science & Technology, University of the Basque Country, 48940 Leioa, Bizkaia, Spain
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10
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Chang CW, Lin MH, Chan CK, Su KY, Wu CH, Lo WC, Lam S, Cheng YT, Liao PH, Wong CH, Wang CC. Automated Quantification of Hydroxyl Reactivities: Prediction of Glycosylation Reactions. Angew Chem Int Ed Engl 2021; 60:12413-12423. [PMID: 33634934 DOI: 10.1002/anie.202013909] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Revised: 02/07/2021] [Indexed: 12/17/2022]
Abstract
The stereoselectivity and yield in glycosylation reactions are paramount but unpredictable. We have developed a database of acceptor nucleophilic constants (Aka) to quantify the nucleophilicity of hydroxyl groups in glycosylation influenced by the steric, electronic and structural effects, providing a connection between experiments and computer algorithms. The subtle reactivity differences among the hydroxyl groups on various carbohydrate molecules can be defined by Aka, which is easily accessible by a simple and convenient automation system to assure high reproducibility and accuracy. A diverse range of glycosylation donors and acceptors with well-defined reactivity and promoters were organized and processed by the designed software program "GlycoComputer" for prediction of glycosylation reactions without involving sophisticated computational processing. The importance of Aka was further verified by random forest algorithm, and the applicability was tested by the synthesis of a Lewis A skeleton to show that the stereoselectivity and yield can be accurately estimated.
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Affiliation(s)
- Chun-Wei Chang
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Mei-Huei Lin
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Chieh-Kai Chan
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Kuan-Yu Su
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Chia-Hui Wu
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Wei-Chih Lo
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Sarah Lam
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Yu-Ting Cheng
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Pin-Hsuan Liao
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Chi-Huey Wong
- The Genomics Research Center, Academia Sinica, Taipei, 115, Taiwan.,Department of Chemistry, The Scripps Research Institute, 10550 N Torrey Pines Road, La Jolla, 92037, USA
| | - Cheng-Chung Wang
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan.,Chemical Biology and Molecular Biophysics Program, Taiwan International Graduate Program (TIGP), Academia Sinica, Taipei, 115, Taiwan
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11
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Chang C, Lin M, Chan C, Su K, Wu C, Lo W, Lam S, Cheng Y, Liao P, Wong C, Wang C. Automated Quantification of Hydroxyl Reactivities: Prediction of Glycosylation Reactions. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202013909] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Chun‐Wei Chang
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Mei‐Huei Lin
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Chieh‐Kai Chan
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Kuan‐Yu Su
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Chia‐Hui Wu
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Wei‐Chih Lo
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Sarah Lam
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Yu‐Ting Cheng
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Pin‐Hsuan Liao
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
| | - Chi‐Huey Wong
- The Genomics Research Center Academia Sinica Taipei 115 Taiwan
- Department of Chemistry The Scripps Research Institute 10550 N Torrey Pines Road La Jolla 92037 USA
| | - Cheng‐Chung Wang
- Institute of Chemistry Academia Sinica Taipei 115 Taiwan
- Chemical Biology and Molecular Biophysics Program Taiwan International Graduate Program (TIGP) Academia Sinica Taipei 115 Taiwan
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12
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Insausti A, Alonso ER, Tercero B, Santos JI, Calabrese C, Vogt N, Corzana F, Demaison J, Cernicharo J, Cocinero EJ. Laboratory Observation of, Astrochemical Search for, and Structure of Elusive Erythrulose in the Interstellar Medium. J Phys Chem Lett 2021; 12:1352-1359. [PMID: 33507076 DOI: 10.1021/acs.jpclett.0c03050] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Rotational spectroscopy provides the most powerful means of identifying molecules of biological interest in the interstellar medium (ISM), but despite their importance, the detection of carbohydrates has remained rather elusive. Here, we present a comprehensive Fourier transform rotational spectroscopic study of elusive erythrulose, a sugar building block likely to be present in the ISM, employing a novel method of transferring the hygroscopic oily carbohydrate into the gas phase. The high sensitivity of the experiment allowed the rotational spectra of all monosubstituted isotopologue species of 13C-12C3H8O4 to be recorded, which, together with quantum chemical calculations, enabled us to determine their equilibrium geometries (reSE) with great precision. Searches employing the new experimental data for erythrulose have been undertaken in different ISM regions, so far including the cold areas Barnard 1, the pre-stellar core TMC-1, Sagittarius B2. Although no lines of erythrulose were found, this data will serve to enable future searches and possible detections in other ISM regions.
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Affiliation(s)
- Aran Insausti
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
- Instituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, 48940 Leioa, Spain
| | - Elena R Alonso
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
- Instituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, 48940 Leioa, Spain
- Fundación Biofísica Bizkaia/Biofisika Bizkaia Fundazioa (FBB), Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Belen Tercero
- Observatorio Astronómico Nacional (OAN-IGN), c/Alfonso XII, 3, 28014 Madrid, Spain
- Observatorio de Yebes (IGN), Cerro de la Palera, s/n, 19141 Yebes, Guadalajara Spain
| | - José I Santos
- SGIker UPV/EHU, Centro Joxe Mari Korta, Tolosa Hiribidea 72, 20018 Donostia, Spain
| | - Camilla Calabrese
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
- Instituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, 48940 Leioa, Spain
- Fundación Biofísica Bizkaia/Biofisika Bizkaia Fundazioa (FBB), Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Natalja Vogt
- Chemical Information Systems, Faculty of Sciences, University of Ulm, 89069 Ulm, Germany
- Department of Chemistry, Lomonosov Moscow State University, 119992 Moscow, Russian Federation
| | - Francisco Corzana
- Departamento de Química, Centro de Investigación en Síntesis Química, Universidad de La Rioja, 26006 Logroño, Spain
| | - Jean Demaison
- Chemical Information Systems, Faculty of Sciences, University of Ulm, 89069 Ulm, Germany
| | - Jose Cernicharo
- Instituto de Física Fundamental (IFF-CSIC), Group of Molecular Astrophysics, c/Serrano 123, 28006 Madrid, Spain
| | - Emilio J Cocinero
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Barrio Sarriena s/n, 48940 Leioa, Spain
- Instituto Biofisika (UPV/EHU, CSIC), University of the Basque Country, 48940 Leioa, Spain
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13
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Chang CW, Lin MH, Wang CC. Statistical Analysis of Glycosylation Reactions. Chemistry 2020; 27:2556-2568. [PMID: 32939892 DOI: 10.1002/chem.202003105] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 09/15/2020] [Indexed: 12/27/2022]
Abstract
Chemical synthesis is one of the practical approaches to access carbohydrate-based natural products and their derivatives with high quality and in a large quantity. However, stereoselectivity during the glycosylation reaction is the main challenge because the reaction can generate both α- and β-glycosides. The main focus of the present article is the concept of recent mechanistic studies that have applied statistical analysis and quantitation for defining stereoselective changes during the reaction process. Based on experimental evidence, a detailed discussion associated with the mechanism and degree of influence affecting the stereoselective outcome of glycosylation is included.
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Affiliation(s)
- Chun-Wei Chang
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Mei-Huei Lin
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan
| | - Cheng-Chung Wang
- Institute of Chemistry, Academia Sinica, Taipei, 115, Taiwan.,Chemical Biology and Molecular Biophysics Program (Taiwan), International Graduate Program (TIGP), Academia Sinica, Taipei, 115, Taiwan
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14
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Matviitsuk A, Denmark SE. Enantio‐ and Diastereoselective, Lewis Base Catalyzed, Cascade Sulfenoacetalization of Alkenyl Aldehydes. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906535] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Anastassia Matviitsuk
- Roger Adams LaboratoryDepartment of ChemistryUniversity of Illinois Urbana IL 61801 USA
| | - Scott E. Denmark
- Roger Adams LaboratoryDepartment of ChemistryUniversity of Illinois Urbana IL 61801 USA
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15
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Matviitsuk A, Denmark SE. Enantio- and Diastereoselective, Lewis Base Catalyzed, Cascade Sulfenoacetalization of Alkenyl Aldehydes. Angew Chem Int Ed Engl 2019; 58:12486-12490. [PMID: 31295383 DOI: 10.1002/anie.201906535] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2019] [Indexed: 01/26/2023]
Abstract
A catalytic, enantio-, and diastereoselective formation of sulfenyl acetals bearing multiple stereogenic centers is reported. Alkenyl aldehydes undergo a chiral thiiranium ion initiated cascade starting with intramolecular capture by a formyl group and termination by capture with HFIP solvent. This method provides a one-pot synthesis of dihydropyran and 1,3-disubstituted isochroman acetals in good to excellent yield and with high levels of diastereo- (up to >99:1 dr) and enantiocontrol (up to 99:1 er).
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Affiliation(s)
- Anastassia Matviitsuk
- Roger Adams Laboratory, Department of Chemistry, University of Illinois, Urbana, IL, 61801, USA
| | - Scott E Denmark
- Roger Adams Laboratory, Department of Chemistry, University of Illinois, Urbana, IL, 61801, USA
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16
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Sau A, Palo-Nieto C, Galan MC. Substrate-Controlled Direct α-Stereoselective Synthesis of Deoxyglycosides from Glycals Using B(C 6F 5) 3 as Catalyst. J Org Chem 2019; 84:2415-2424. [PMID: 30706711 PMCID: PMC6466476 DOI: 10.1021/acs.joc.8b02613] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
![]()
B(C6F5)3 enables the metal-free
unprecedented substrate-controlled direct α-stereoselective
synthesis of deoxyglycosides from glycals. 2,3-Unsaturated α-O-glycoside products are obtained with deactivated glycals
at 75 °C in the presence of the catalyst, while 2-deoxyglycosides
are formed using activated glycals that bear no leaving group at C-3
at lower temperatures. The reaction proceeds in good to excellent
yields via concomitant borane activation of glycal donor and nucleophile
acceptor. The method is exemplified with the synthesis of a series
of rare and biologically relevant glycoside analogues.
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Affiliation(s)
- Abhijit Sau
- School of Chemistry , University of Bristol , Cantock's Close, Bristol BS8 1TS , United Kingdom
| | - Carlos Palo-Nieto
- School of Chemistry , University of Bristol , Cantock's Close, Bristol BS8 1TS , United Kingdom
| | - M Carmen Galan
- School of Chemistry , University of Bristol , Cantock's Close, Bristol BS8 1TS , United Kingdom
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17
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Aboussafy CL, Andersen Gersby LB, Molinaro A, Newman MA, Lowary TL. A Convergent Route to Enantiomers of the Bicyclic Monosaccharide Bradyrhizose Leads to Insight into the Bioactivity of an Immunologically Silent Lipopolysaccharide. J Org Chem 2018; 84:14-41. [DOI: 10.1021/acs.joc.8b02206] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Claude Larrivée Aboussafy
- Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2G2
| | | | - Antonio Molinaro
- Department of Chemical Sciences, University of Naples “Federico II” Via Cintia 4, 80126 Napoli, Italy
| | - Mari-Anne Newman
- Department of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg, Denmark
| | - Todd L. Lowary
- Alberta Glycomics Centre and Department of Chemistry, University of Alberta, Edmonton, Alberta, Canada T6G 2G2
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18
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Chatterjee S, Moon S, Hentschel F, Gilmore K, Seeberger PH. An Empirical Understanding of the Glycosylation Reaction. J Am Chem Soc 2018; 140:11942-11953. [PMID: 30125122 DOI: 10.1021/jacs.8b04525] [Citation(s) in RCA: 88] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
Reliable glycosylation reactions that allow for the stereo- and regioselective installation of glycosidic linkages are paramount to the chemical synthesis of glycan chains. The stereoselectivity of glycosylations is exceedingly difficult to control due to the reaction's high degree of sensitivity and its shifting, simultaneous mechanistic pathways that are controlled by variables of unknown degree of influence, dominance, or interdependency. An automated platform was devised to quickly, reproducibly, and systematically screen glycosylations and thereby address this fundamental problem. Thirteen variables were investigated in as isolated a manner as possible, to identify and quantify inherent preferences of electrophilic glycosylating agents (glycosyl donors) and nucleophiles (glycosyl acceptors). Ways to enhance, suppress, or even override these preferences using judicious environmental conditions were discovered. Glycosylations involving two specific partners can be tuned to produce either 11:1 selectivity of one stereoisomer or 9:1 of the other by merely changing the reaction conditions.
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Affiliation(s)
- Sourav Chatterjee
- Department of Biomolecular Systems , Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1 , 14476 Potsdam , Germany
| | - Sooyeon Moon
- Department of Biomolecular Systems , Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1 , 14476 Potsdam , Germany.,Institute of Chemistry and Biochemistry , Freie Universität Berlin , Arnimallee 22 , 14195 Berlin , Germany
| | - Felix Hentschel
- Department of Biomolecular Systems , Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1 , 14476 Potsdam , Germany
| | - Kerry Gilmore
- Department of Biomolecular Systems , Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1 , 14476 Potsdam , Germany
| | - Peter H Seeberger
- Department of Biomolecular Systems , Max-Planck-Institute of Colloids and Interfaces , Am Mühlenberg 1 , 14476 Potsdam , Germany.,Institute of Chemistry and Biochemistry , Freie Universität Berlin , Arnimallee 22 , 14195 Berlin , Germany
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19
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Adero PO, Amarasekara H, Wen P, Bohé L, Crich D. The Experimental Evidence in Support of Glycosylation Mechanisms at the S N1-S N2 Interface. Chem Rev 2018; 118:8242-8284. [PMID: 29846062 PMCID: PMC6135681 DOI: 10.1021/acs.chemrev.8b00083] [Citation(s) in RCA: 213] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A critical review of the state-of-the-art evidence in support of the mechanisms of glycosylation reactions is provided. Factors affecting the stability of putative oxocarbenium ions as intermediates at the SN1 end of the mechanistic continuum are first surveyed before the evidence, spectroscopic and indirect, for the existence of such species on the time scale of glycosylation reactions is presented. Current models for diastereoselectivity in nucleophilic attack on oxocarbenium ions are then described. Evidence in support of the intermediacy of activated covalent glycosyl donors is reviewed, before the influences of the structure of the nucleophile, of the solvent, of temperature, and of donor-acceptor hydrogen bonding on the mechanism of glycosylation reactions are surveyed. Studies on the kinetics of glycosylation reactions and the use of kinetic isotope effects for the determination of transition-state structure are presented, before computational models are finally surveyed. The review concludes with a critical appraisal of the state of the art.
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Affiliation(s)
- Philip Ouma Adero
- Department of Chemistry , Wayne State University , 5101 Cass Avenue , Detroit , Michigan 48202 , United States
| | - Harsha Amarasekara
- Department of Chemistry , Wayne State University , 5101 Cass Avenue , Detroit , Michigan 48202 , United States
| | - Peng Wen
- Department of Chemistry , Wayne State University , 5101 Cass Avenue , Detroit , Michigan 48202 , United States
| | - Luis Bohé
- Institut de Chimie des Substances Naturelles, CNRS UPR 2301 , Université Paris-Sud Université Paris-Saclay , 1 avenue de la Terrasse , 91198 Gif-sur-Yvette , France
| | - David Crich
- Department of Chemistry , Wayne State University , 5101 Cass Avenue , Detroit , Michigan 48202 , United States
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20
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Zeng J, Liu Y, Chen W, Zhao X, Meng L, Wan Q. Glycosyl Sulfoxides in Glycosylation Reactions. Top Curr Chem (Cham) 2018; 376:27. [DOI: 10.1007/s41061-018-0205-4] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2018] [Accepted: 05/31/2018] [Indexed: 01/01/2023]
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21
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Lloyd D, Bennett CS. An Improved Approach to the Direct Construction of 2-Deoxy-β-Linked Sugars: Applications to Oligosaccharide Synthesis. Chemistry 2018; 24:7610-7614. [PMID: 29572995 DOI: 10.1002/chem.201800736] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2018] [Revised: 03/19/2018] [Indexed: 02/05/2023]
Abstract
A next-generation reagent-controlled approach for the synthesis of 2,6-dideoxy and 2,3,6-trideoxy sugar donors in good yield and high β-selectivity is reported. The use of p-toluenesulfonyl chloride and potassium hexamethyldisilazide (KHMDS) greatly simplifies deoxy-sugar glycoside construction, and can be used for gram-scale glycosylation reactions. The development of this approach and its application to the construction of β-linked deoxy-sugar oligosaccharides are described.
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Affiliation(s)
- Dina Lloyd
- Department Department of Chemistry, Tufts University, 62 Talbot Ave., Medford, MA, 02155, USA
| | - Clay S Bennett
- Department Department of Chemistry, Tufts University, 62 Talbot Ave., Medford, MA, 02155, USA
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22
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Sato K, Omahdi Z, Shibata K, Sonoda KH, Yamasaki S, Tanaka H. Synthesis and Biological Evaluation of O-Methylated Glycolipids Related to PGLs via Direct Stereoselective Glycosidation and Sequential Suzuki-Miyaura Coupling using Boracyclane. Chemistry 2017; 23:16374-16379. [PMID: 28881056 DOI: 10.1002/chem.201703684] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2017] [Indexed: 12/15/2022]
Abstract
Synthesis of O-methylated glycolipids via direct stereoselective glycosidation whose sugar moieties are related to those in phenolic glycolipids (PGLs) is reported. Treatment of 2-O-methyl-rhamnosyl imidates with I2 and nBu4 NOTf resulted in their activation under low temperature and provided the α-rhamnosides with excellent α-selectivity. nBu4 NOTf enhanced the electorophilicity of iodine. This methodology improved the efficiency of the synthesis of both PGL-1 and PGL-tb1 sugars. The process involved the formation of 2-O-naphthylmethyl-α-rhamnoside and 2-O-methyl-α-fucoside. Sequential Suzuki-Miyaura coupling using synthetic glycosides, boracyclane, and aryl bromides provided glycolipids related to PGL sugars, and was accomplished with a one-pot process. Finally, we elucidated the immunosuppressive activities of all these synthetic compounds and found that a phenyl 3-O-α-rhamnosyl-2-O-methyl-α-rhamnoside possessing a 6-(2-naphthyl)hexyl group exhibited the strongest inhibitory effect.
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Affiliation(s)
- Ko Sato
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1-H101 Ookayama, Meguro, Tokyo, 152-8552, Japan
| | - Zakaria Omahdi
- Division of Molecular Immunology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashiku, Fukuoka, 812-8582, Japan.,Current address: Department of Molecular Immunology, Research Institute for Microbial Diseases, and Laboratory for Molecular Immunology, Osaka University, 3-1 Yamadaoka, Suita 565-0871, Osaka University, Japan.,Current address: WPI Immunology Frontier Research Center (iFReC), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan
| | - Kensuke Shibata
- Division of Molecular Immunology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashiku, Fukuoka, 812-8582, Japan.,Department of Ophthalmology, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashiku, Fukuoka, 812-8582, Japan.,Current address: WPI Immunology Frontier Research Center (iFReC), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan
| | - Koh-Hei Sonoda
- Department of Ophthalmology, Graduate School of Medical Sciences, Kyushu University, 3-1-1 Maidashi, Higashiku, Fukuoka, 812-8582, Japan
| | - Sho Yamasaki
- Division of Molecular Immunology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashiku, Fukuoka, 812-8582, Japan.,Current address: Department of Molecular Immunology, Research Institute for Microbial Diseases, and Laboratory for Molecular Immunology, Osaka University, 3-1 Yamadaoka, Suita 565-0871, Osaka University, Japan.,Current address: WPI Immunology Frontier Research Center (iFReC), Osaka University, 3-1 Yamadaoka, Suita, 565-0871, Japan
| | - Hiroshi Tanaka
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1-H101 Ookayama, Meguro, Tokyo, 152-8552, Japan
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23
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Affiliation(s)
| | - Jiatong Guo
- Department of Chemistry, University of Florida, Gainesville, Florida, USA
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24
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Zeng J, Xu Y, Wang H, Meng L, Wan Q. Recent progress on the synthesis of 2-deoxy glycosides. Sci China Chem 2017. [DOI: 10.1007/s11426-016-9010-9] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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25
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Schumann B, Parameswarappa SG, Lisboa MP, Kottari N, Guidetti F, Pereira CL, Seeberger PH. Nucleophil-dirigierte Stereokontrolle über Glykosylierungsreaktionen durch geminal-difluorierte Nucleophile. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201606774] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Benjamin Schumann
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
- Institut für Chemie und Biochemie; Freie Universität Berlin; Arnimallee 22 14195 Berlin Deutschland
| | - Sharavathi G. Parameswarappa
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
| | - Marilda P. Lisboa
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
| | - Naresh Kottari
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
| | - Fabio Guidetti
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
| | - Claney L. Pereira
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
| | - Peter H. Seeberger
- Abteilung Biomolekulare Systeme; Max-Planck-Institut für Kolloid- und Grenzflächenforschung; 14424 Potsdam Deutschland
- Institut für Chemie und Biochemie; Freie Universität Berlin; Arnimallee 22 14195 Berlin Deutschland
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26
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Schumann B, Parameswarappa SG, Lisboa MP, Kottari N, Guidetti F, Pereira CL, Seeberger PH. Nucleophile-Directed Stereocontrol Over Glycosylations Using Geminal-Difluorinated Nucleophiles. Angew Chem Int Ed Engl 2016; 55:14431-14434. [DOI: 10.1002/anie.201606774] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Revised: 08/31/2016] [Indexed: 01/31/2023]
Affiliation(s)
- Benjamin Schumann
- Department of Biomolecular Systems; Max Planck Institute of Colloids and Interfaces; 14424 Potsdam Germany
- Institute of Chemistry and Biochemistry; Freie Universität Berlin; Arnimallee 22 14195 Berlin Germany
| | | | - Marilda P. Lisboa
- Department of Biomolecular Systems; Max Planck Institute of Colloids and Interfaces; 14424 Potsdam Germany
| | - Naresh Kottari
- Department of Biomolecular Systems; Max Planck Institute of Colloids and Interfaces; 14424 Potsdam Germany
| | - Fabio Guidetti
- Department of Biomolecular Systems; Max Planck Institute of Colloids and Interfaces; 14424 Potsdam Germany
| | - Claney L. Pereira
- Department of Biomolecular Systems; Max Planck Institute of Colloids and Interfaces; 14424 Potsdam Germany
| | - Peter H. Seeberger
- Department of Biomolecular Systems; Max Planck Institute of Colloids and Interfaces; 14424 Potsdam Germany
- Institute of Chemistry and Biochemistry; Freie Universität Berlin; Arnimallee 22 14195 Berlin Germany
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27
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Heuckendorff M, Jensen HH. On the Gluco/Manno Paradox: Practical α-Glucosylations by NIS/TfOH Activation of 4,6-O
-Tethered Thioglucoside Donors. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600899] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Mads Heuckendorff
- Department of Chemistry; Aarhus University; Langelandsgade 140 8000 Aarhus C Denmark
| | - Henrik H. Jensen
- Department of Chemistry; Aarhus University; Langelandsgade 140 8000 Aarhus C Denmark
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28
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Mazur M, Barycza B, Andriamboavonjy H, Lavoie S, Tamigney Kenfack M, Laroussarie A, Blériot Y, Gauthier C. 4′-Methoxyphenacyl-Assisted Synthesis of β-Kdo Glycosides. J Org Chem 2016; 81:10585-10599. [DOI: 10.1021/acs.joc.6b01431] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Marcelina Mazur
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
- Department
of Chemistry, Wroclaw University of Environmental and Life Sciences, Norwida
25, 50-375 Wroclaw, Poland
| | - Barbara Barycza
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
- Department
of Chemistry, Wroclaw University of Environmental and Life Sciences, Norwida
25, 50-375 Wroclaw, Poland
| | - Hanitra Andriamboavonjy
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
| | - Serge Lavoie
- Laboratoire
LASEVE, Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555 boul. de l’Université, Chicoutimi (Québec), Canada G7H 2B1
| | - Marielle Tamigney Kenfack
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
| | - Anaïs Laroussarie
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
| | - Yves Blériot
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
| | - Charles Gauthier
- Institut
de Chimie IC2MP, CNRS-UMR 7285, Équipe Synthèse Organique, Université de Poitiers, 4 rue Michel Brunet, 86073 Poitiers Cedex 9, France
- Laboratoire
LASEVE, Département des Sciences Fondamentales, Université du Québec à Chicoutimi, 555 boul. de l’Université, Chicoutimi (Québec), Canada G7H 2B1
- INRS-Institut
Armand-Frappier, Université du Québec, 531 boul. des Prairies, Laval (Québec), Canada H7V 1B7
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29
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Goswami M, Ashley DC, Baik MH, Pohl NLB. Mechanistic Studies of Bismuth(V)-Mediated Thioglycoside Activation Reveal Differential Reactivity of Anomers. J Org Chem 2016; 81:5949-62. [PMID: 27295299 DOI: 10.1021/acs.joc.6b00860] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The mechanism of bismuth(V)-mediated thioglycoside activation was examined using reaction kinetics and quantum chemical reaction models. NMR experiments show an unusual nonlinear growth/decay curve for the glycosylation reaction. Further studies suggest an anomeric inversion of the β-glycoside donor to the α-donor during its activation, even in the presence of a neighboring 2-position acetate. Interestingly, in situ anomerization was not observed in the activation of an α-glycoside donor, and this anomer also showed faster reaction times and higher product diastereoselectivites. Density functional theory calculations identify the structure of the promoter triphenyl bismuth ditriflate, [Ph3Bi(OTf)2, 1], in solution and map out the energetics of its interactions with the two thioglycoside anomers. These calculations suggest that 1 must bind the thiopropyl arm to induce triflate loss. The computational analyses also show that, unlike most O-glycosides, the β- and α-donor S-glycosides are similar in energy. One energetically reasonable anomerization pathway of the donors is an SN1-like mechanism promoted by forming a bismuth-sulfonium adduct with the Lewis acidic Bi(V) for the formation of an oxacarbenium intermediate. Finally, the computed energy compensations needed to form these α vs β Bi adducts is a possible explanation for the differential reactivity of these donors.
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Affiliation(s)
- Manibarsha Goswami
- Department of Chemistry, Iowa State University , Ames, Iowa 50011, United States
| | - Daniel C Ashley
- Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States
| | - Mu-Hyun Baik
- Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.,Center for Catalytic Hydrocarbon Functionalizations, Institute for Basic Science (IBS) , Daejeon 305-701, Korea.,Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST) , Daejeon 305-701, Korea
| | - Nicola L B Pohl
- Department of Chemistry, Indiana University , Bloomington, Indiana 47405, United States.,Department of Chemical and Biological Engineering, Iowa State University , Ames, Iowa 50011, United States
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30
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Heuckendorff M, Poulsen LT, Jensen HH. Remote Electronic Effects by Ether Protecting Groups Fine-Tune Glycosyl Donor Reactivity. J Org Chem 2016; 81:4988-5006. [PMID: 27224456 DOI: 10.1021/acs.joc.6b00528] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
It was established that para-substituted benzyl ether protecting groups affect the reactivity of glycosyl donors of the thioglycoside type with the N-iodosuccinimide/triflic acid promoter system. Having electron donating p-methoxybenzyl ether (PMB) groups increased the reactivity of the donor in comparison to having electron withdrawing p-chloro (PClB) or p-cyanobenzyl ether (PCNB) protecting groups, which decreased the reactivity of the glycosyl donor relative to the parent benzyl ether (Bn) protected glycosyl donor. These findings were used to perform the first armed-disarmed coupling between two benzylated glucosyl donors by tuning their reactivity. In addition, the present work describes a highly efficient palladium catalyzed multiple cyanation and methoxylation of p-chlorobenzyl protected thioglycosides. The results of this paper regarding both the different electron withdrawing properties of various benzyl ethers and the efficient and multiple protecting group transformations are applicable in general organic chemistry and not restricted to carbohydrate chemistry.
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Affiliation(s)
- Mads Heuckendorff
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Lulu Teressa Poulsen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
| | - Henrik H Jensen
- Department of Chemistry, Aarhus University , Langelandsgade 140, 8000 Aarhus C, Denmark
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31
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Catching elusive glycosyl cations in a condensed phase with HF/SbF5 superacid. Nat Chem 2015; 8:186-91. [DOI: 10.1038/nchem.2399] [Citation(s) in RCA: 103] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2015] [Accepted: 10/13/2015] [Indexed: 01/22/2023]
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32
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Adero PO, Furukawa T, Huang M, Mukherjee D, Retailleau P, Bohé L, Crich D. Cation Clock Reactions for the Determination of Relative Reaction Kinetics in Glycosylation Reactions: Applications to Gluco- and Mannopyranosyl Sulfoxide and Trichloroacetimidate Type Donors. J Am Chem Soc 2015; 137:10336-45. [PMID: 26207807 PMCID: PMC4545385 DOI: 10.1021/jacs.5b06126] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The development of a cation clock method based on the intramolecular Sakurai reaction for probing the concentration dependence of the nucleophile in glycosylation reactions is described. The method is developed for the sulfoxide and trichloroacetimidate glycosylation protocols. The method reveals that O-glycosylation reactions have stronger concentration dependencies than C-glycosylation reactions consistent with a more associative, S(N)2-like character. For the 4,6-O-benzylidene-directed mannosylation reaction a significant difference in concentration dependence is found for the formation of the β- and α-anomers, suggesting a difference in mechanism and a rationale for the optimization of selectivity regardless of the type of donor employed. In the mannose series the cyclization reaction employed as clock results in the formation of cis and trans-fused oxabicyclo[4,4,0]decanes as products with the latter being strongly indicative of the involvement of a conformationally mobile transient glycosyl oxocarbenium ion. With identical protecting group arrays cyclization in the glucopyranose series is more rapid than in the mannopyranose manifold. The potential application of related clock reactions in other carbenium ion-based branches of organic synthesis is considered.
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Affiliation(s)
- Philip O. Adero
- Department of Chemistry, Wayne State University, 5101 Cass Avenue Detroit, MI 48202, USA
| | - Takayuki Furukawa
- Department of Chemistry, Wayne State University, 5101 Cass Avenue Detroit, MI 48202, USA
| | - Min Huang
- Institut de Chimie des Substances Naturelles, CNRS-ICSN UPR2301, Université Paris-Sud, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
| | - Debaraj Mukherjee
- Department of Chemistry, Wayne State University, 5101 Cass Avenue Detroit, MI 48202, USA
| | - Pascal Retailleau
- Institut de Chimie des Substances Naturelles, CNRS-ICSN UPR2301, Université Paris-Sud, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
| | - Luis Bohé
- Institut de Chimie des Substances Naturelles, CNRS-ICSN UPR2301, Université Paris-Sud, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
| | - David Crich
- Department of Chemistry, Wayne State University, 5101 Cass Avenue Detroit, MI 48202, USA
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Bohé L, Crich D. A propos of glycosyl cations and the mechanism of chemical glycosylation; the current state of the art. Carbohydr Res 2015; 403:48-59. [PMID: 25108484 PMCID: PMC4281519 DOI: 10.1016/j.carres.2014.06.020] [Citation(s) in RCA: 101] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2014] [Revised: 06/16/2014] [Accepted: 06/19/2014] [Indexed: 12/23/2022]
Abstract
An overview of recent advances in glycosylation with particular emphasis on mechanism is presented. The mounting evidence for both the existence of glycosyl oxocarbenium ions as fleeting intermediates in some reactions, and the crucial role of the associated counterion in others is discussed. The extremes of the SN1 and SN2 manifolds for the glycosylation reaction are bridged by a continuum of mechanisms in which it appears likely that most examples are located.
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Affiliation(s)
- Luis Bohé
- Centre de Recherche de Gif, CNRS, Institut de Chimie des Substances Naturelles, Avenue de la Terrasse, 91198 Gif-sur-Yvette, France
| | - David Crich
- Department of Chemistry, Wayne State University, 5101 Cass Ave, Detroit, MI 48202, USA.
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34
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Totani K, Shinoda Y, Shiba M, Iwamoto S, Koizumi A, Matsuzaki Y, Hirano M. Silyl-assisted 1,2-cis-α-glucosylation for the synthesis of a triglucoside moiety in high-mannose-type oligosaccharides. RSC Adv 2015. [DOI: 10.1039/c5ra16659d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
We developed a new 1,2-cis-α-glucosylation reaction, mediated by enhancing the α-favoured transition state via an electron-donating form the TBS group.
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Affiliation(s)
- Kiichiro Totani
- Department of Materials and Life Science
- Seikei University
- Tokyo 180-8633
- Japan
| | - Yuki Shinoda
- Department of Materials and Life Science
- Seikei University
- Tokyo 180-8633
- Japan
| | - Masaaki Shiba
- Department of Materials and Life Science
- Seikei University
- Tokyo 180-8633
- Japan
| | - Shogo Iwamoto
- Department of Materials and Life Science
- Seikei University
- Tokyo 180-8633
- Japan
| | - Akira Koizumi
- Department of Materials and Life Science
- Seikei University
- Tokyo 180-8633
- Japan
| | - Yuji Matsuzaki
- Glyco Synthetic Lab
- Tokyo Chemical Industry Co., Ltd
- Tokyo 114-0003
- Japan
| | - Makoto Hirano
- Department of Materials and Life Science
- Seikei University
- Tokyo 180-8633
- Japan
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35
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The intriguing dual-directing effect of 2-cyanobenzyl ether for a highly stereospecific glycosylation reaction. Nat Commun 2014; 5:5051. [DOI: 10.1038/ncomms6051] [Citation(s) in RCA: 69] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2014] [Accepted: 08/20/2014] [Indexed: 11/08/2022] Open
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36
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Tilve MJ, Gallo-Rodriguez C. Conformationally restricted 3,5-O-(di-tert-butylsilylene)-d-galactofuranosyl thioglycoside donor for 1,2-cis α-d-galactofuranosylation. Carbohydr Res 2014; 397:7-17. [DOI: 10.1016/j.carres.2014.07.024] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Revised: 07/29/2014] [Accepted: 07/30/2014] [Indexed: 01/07/2023]
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37
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Manabe S, Ito Y. Pyranosides with 2,3-trans carbamate groups: exocyclic or endocyclic cleavage reaction? CHEM REC 2014; 14:502-15. [PMID: 24914008 DOI: 10.1002/tcr.201402004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2014] [Indexed: 12/28/2022]
Abstract
Pyranosides with 2,3-trans carbamate groups exhibit high 1,2-cis selectivity in glycosylation reactions. Using glycosyl donors with N-benzyl 2,3-trans carbamate groups, an anti-Helicobacter pylori oligosaccharide was synthesized in an efficient manner. Moreover, pyranosides with 2,3-trans carbamate groups readily undergo anomerization from the β to the α configuration under mild acidic conditions via endocyclic cleavage. Acyclic cations generated during the endocyclic cleavage reaction were captured using reduction and intramolecular Friedel-Crafts reaction. By exploiting this anomerization, multiply aligned 1,2-trans glycosyl bonds can be transformed to 1,2-cis glycosyl bonds in a single operation.
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Affiliation(s)
- Shino Manabe
- RIKEN, Synthetic Cellular Chemistry Laboratory, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
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38
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Whitfield DM. In a glycosylation reaction how does a hydroxylic nucleophile find the activated anomeric carbon? Carbohydr Res 2014; 403:69-89. [PMID: 24962244 DOI: 10.1016/j.carres.2014.05.021] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2014] [Revised: 05/26/2014] [Accepted: 05/27/2014] [Indexed: 12/23/2022]
Abstract
The mechanism by which nucleophilic hydroxyls are attracted to activated glycopyranosyl donors is not known. Besides the intrinsic attraction of oxygen centred negative dipoles towards the developing electron deficiency at the anomeric carbon only a few suggestions have been given in the literature. By studying the effect on Density Functional Theory (DFT) modelled glycosylation reactions on the presence of polar additives as tested with acetonitrile two possible effects have been identified. One was noted in a previous publication (Carbohydr. Res.2012, 356, 180-190) and two further examples discovered here that suggest that a lone pair of a nucleophile approaching a donor with a β-leaving group from the α-face can act as the antiperiplanar lone pair that assists leaving group departure. This interaction starts at just under a nucleophile C-1 separation of 3Å and has an incipient bond angle of O-5-C-1-Nuc(O or N) of very close to 90° which can be at C-1 with the p-type orbital at C-1-O-5 of the incipient oxacarbenium ion, that is, the LUMO of the activated donor. The 2nd interaction is less well studied and is suggested to be a similar bonding interaction which moves β-face nucleophiles to O-Nuc-C-1-leaving groups angles close to 180°.
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Affiliation(s)
- Dennis M Whitfield
- National Research Council, Human Health Therapeutics, 100 Sussex Drive, Ottawa, ON K1A 0R6, Canada.
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39
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Zhang L, Zhu X. Synthesis of Calocybe indica var. APK2 polysaccharide repeating unit. Carbohydr Res 2014; 391:43-7. [DOI: 10.1016/j.carres.2014.04.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2014] [Revised: 04/01/2014] [Accepted: 04/02/2014] [Indexed: 12/30/2022]
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40
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Probing the catalytic mechanism of bovine CD38/NAD+ glycohydrolase by site directed mutagenesis of key active site residues. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2014; 1844:1317-31. [PMID: 24721563 DOI: 10.1016/j.bbapap.2014.03.014] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Subscribe] [Scholar Register] [Received: 01/16/2014] [Revised: 03/28/2014] [Accepted: 03/31/2014] [Indexed: 01/14/2023]
Abstract
Bovine CD38/NAD(+) glycohydrolase catalyzes the hydrolysis of NAD(+) to nicotinamide and ADP-ribose and the formation of cyclic ADP-ribose via a stepwise reaction mechanism. Our recent crystallographic study of its Michaelis complex and covalently-trapped intermediates provided insights into the modalities of substrate binding and the molecular mechanism of bCD38. The aim of the present work was to determine the precise role of key conserved active site residues (Trp118, Glu138, Asp147, Trp181 and Glu218) by focusing mainly on the cleavage of the nicotinamide-ribosyl bond. We analyzed the kinetic parameters of mutants of these residues which reside within the bCD38 subdomain in the vicinity of the scissile bond of bound NAD(+). To address the reaction mechanism we also performed chemical rescue experiments with neutral (methanol) and ionic (azide, formate) nucleophiles. The crucial role of Glu218, which orients the substrate for cleavage by interacting with the N-ribosyl 2'-OH group of NAD(+), was highlighted. This contribution to catalysis accounts for almost half of the reaction energy barrier. Other contributions can be ascribed notably to Glu138 and Asp147 via ground-state destabilization and desolvation in the vicinity of the scissile bond. Key interactions with Trp118 and Trp181 were also proven to stabilize the ribooxocarbenium ion-like transition state. Altogether we propose that, as an alternative to a covalent acylal reaction intermediate with Glu218, catalysis by bCD38 proceeds through the formation of a discrete and transient ribooxocarbenium intermediate which is stabilized within the active site mostly by electrostatic interactions.
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41
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Gola G, Gallo-Rodriguez C. Synthesis of α-d-Glcp-(1→3)-α-d-Galf-(1→2)-α-l-Rhap constituent of the CPS of Streptococcus pneumoniae 22F. Effect of 3-O-substitution in 1,2-cis α-d-galactofuranosylation. RSC Adv 2014. [DOI: 10.1039/c3ra45658g] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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42
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Manabe S, Satoh H, Hutter J, Lüthi HP, Laino T, Ito Y. Significant substituent effect on the anomerization of pyranosides: mechanism of anomerization and synthesis of a 1,2-cis glucosamine oligomer from the 1,2-trans anomer. Chemistry 2013; 20:124-32. [PMID: 24307501 DOI: 10.1002/chem.201303474] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2013] [Indexed: 11/06/2022]
Abstract
Aminoglycosides containing a 2,3-trans carbamate group easily undergo anomerization from the 1,2-trans glycoside to the 1,2-cis isomer under mild acidic conditions. The N-substituent of the carbamate has a significant effect on the anomerization reaction; in particular, an N-acetyl group facilitated rapid and complete α-anomerization. The differences in reactivity due to the various N-substituents were supported by the results of DFT calculations; the orientation of the acetyl carbonyl group close to the anomeric position was found to contribute significantly to the directing of the anomerization reaction. By exploiting this reaction, oligoaminoglycosides with multiple 1,2-cis glycosidic bonds were generated from 1,2-trans glycosides in a one-step process.
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Affiliation(s)
- Shino Manabe
- RIKEN, Synthetic Cellular Chemistry Laboratory, Hirosawa, Wako, Saitama 351-0198 (Japan), Fax: (+81) 48-462-9430.
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43
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Schmalisch S, Mahrwald R. Organocatalyzed Direct Glycosylation of Unprotected and Unactivated Carbohydrates. Org Lett 2013; 15:5854-7. [DOI: 10.1021/ol402914v] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Sebastian Schmalisch
- Institute of Chemistry, Humboldt-University, Brook-Taylor Str. 2, 12489 Berlin, Germany
| | - Rainer Mahrwald
- Institute of Chemistry, Humboldt-University, Brook-Taylor Str. 2, 12489 Berlin, Germany
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44
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Tikad A, Vincent SP. Constrained 3,6-Anhydro-Heptosides: Synthesis by a DAST-Induced Debenzylative Reaction, and Reactivity Profile. European J Org Chem 2013. [DOI: 10.1002/ejoc.201301071] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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45
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Hoang KLM, Bai Y, Ge X, Liu XW. Exploring the Native Chemical Ligation Concept for Highly Stereospecific Glycosylation Reactions. J Org Chem 2013; 78:5196-204. [DOI: 10.1021/jo400020q] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Kim Le Mai Hoang
- Division
of Chemistry and Biological Chemistry, School
of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Yaguang Bai
- Division
of Chemistry and Biological Chemistry, School
of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Xin Ge
- Division
of Chemistry and Biological Chemistry, School
of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
| | - Xue-Wei Liu
- Division
of Chemistry and Biological Chemistry, School
of Physical and Mathematical Sciences, Nanyang Technological University, 21 Nanyang Link, Singapore 637371
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46
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Appel R, Chelli S, Tokuyasu T, Troshin K, Mayr H. Electrophilicities of benzaldehyde-derived iminium ions: quantification of the electrophilic activation of aldehydes by iminium formation. J Am Chem Soc 2013; 135:6579-87. [PMID: 23570344 DOI: 10.1021/ja401106x] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Rate constants for the reactions of benzaldehyde-derived iminium ions with C-nucleophiles (enamines, silylated ketene acetals, and enol ethers) have been determined photometrically in CH3CN solution and used to determine the electrophilicity parameters E of the cations defined by the correlation log k(20°C) = s(N)(E + N) (Mayr, H.; et al. J. Am. Chem. Soc. 2001, 123, 9500-9512). With electrophilicity parameters from E = -10.69 (Ar = p-MeOC6H4) to E = -8.34 (Ar = p-CF3), the iminium ions Ar-CH═NMe2(+) have almost the same reactivities as analogously substituted arylidenemalononitriles Ar-CH═C(CN)2 and are 10 orders of magnitude more reactive than the corresponding aldehydes. The rate constants for the reactions of iminium ions with amines and water in acetonitrile are 10(3)-10(5) times faster than predicted by the quoted correlation, which is explained by the transition states which already experience the anomeric stabilization of the resulting N,N- and O,N-acetals.
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Affiliation(s)
- Roland Appel
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstrasse 5-13, 81377 München, Germany
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47
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Nigst TA, Mayr H. Comparison of the Electrophilic Reactivities ofN-Acylpyridinium Ions and Other Acylating Agents. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201540] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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48
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Lepage ML, Bodlenner A, Compain P. Stereoselective Synthesis of α-Glycosyl Azides by TMSOTf-Mediated Ring Opening of 1,6-Anhydro Sugars. European J Org Chem 2013. [DOI: 10.1002/ejoc.201201580] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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49
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Satoh H, Manabe S. Design of chemical glycosyl donors: does changing ring conformation influence selectivity/reactivity? Chem Soc Rev 2013; 42:4297-309. [PMID: 23364773 DOI: 10.1039/c3cs35457a] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
This tutorial review focuses on the design of glycosyl donors, especially on attempts to control selectivity/reactivity by employing bulky substituents, cyclic protecting groups, or bridged structures. These structural modifications are performed to change the conformational distributions of pyranoside/furanoside rings. We also briefly discuss this issue with regard to studies on furanosides and enzymatic glycosylation reactions. Readers will find that some of the designed glycosyl donors have been used to achieve total syntheses of natural products.
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Affiliation(s)
- Hiroko Satoh
- National Institute of Informatics (NII), Hitotsubashi 2-1-2, Tokyo 101-8430, Japan.
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50
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Manabe S, Satoh H. Unique Reactivity of Pyranosides with 2,3-trans Carbamate Group; Renaissance of Endocyclic Cleavage Reaction. J SYN ORG CHEM JPN 2013. [DOI: 10.5059/yukigoseikyokaishi.71.616] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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