1
|
Imbriano A, Tricase A, Macchia E, Torsi L, Bollella P. Self-powered logically operated fluorescent detection of hepatitis B virus (HBV). Anal Chim Acta 2023; 1252:341037. [PMID: 36935148 DOI: 10.1016/j.aca.2023.341037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Revised: 02/28/2023] [Accepted: 03/01/2023] [Indexed: 03/06/2023]
Abstract
In this study, a novel sensing strategy based on double sensing/actuating pathway is demonstrated, being capable to trigger the DNA-based AND gate for the sensitive and selective detection of hepatitis B virus DNA (HBV-DNA). Such an approach encompasses an enzymatic machinery logically operated using the variation of physiologically relevant biomarkers for liver dysfunctions. Alanine aminotransferase (ALT) and lactate dehydrogenase (LDH) are used as inputs of an AND gate generating an output signal, namely lactate. In particular, lactate is oxidized back to pyruvate at the anodic electrode by lactate oxidase connected in mediated electron transfer through ferrocene moieties (creating an amplifying recycling mechanism). The anodic electrode is further connected with a Myrothecium verrucaria bilirubin oxidase (MvBOx) based biocathode modified with SiO2 nanoparticles (SiO2NPs) functionalized with phenyl boronic acid and trigonelline, triggering the release of quenching DNA (qDNA) upon local pH change at the electrode surface (notably, modified SiONPs gets negatively recharged upon local pH gradient releasing negatively charged DNA). Next, the released qDNA labeled with BHQ2 and detecting DNA (dDNA, labeled with FAM) are detecting HBV-DNA. The proposed biosensor can discriminate between the absence and presence of HBV-DNA setting the threshold at 0.05 fM in model buffer solutions and 1 fM in human serum. This enzymatic/DNA logic network can be of particular interest for future biomedical applications (e.g., early detection of liver cancer disease etc.). In the future development this technology could be easily integrated with a smartphone camera, allowing more user-friendly applications.
Collapse
Affiliation(s)
- Anna Imbriano
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy; Centre for Colloid and Surface Science, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy
| | - Angelo Tricase
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy
| | - Eleonora Macchia
- Dipartimento di Farmacia-Scienze del Farmaco, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy; Faculty of Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
| | - Luisa Torsi
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy; Centre for Colloid and Surface Science, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy; Faculty of Science and Engineering, Åbo Akademi University, 20500, Turku, Finland
| | - Paolo Bollella
- Dipartimento di Chimica, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy; Centre for Colloid and Surface Science, Università degli Studi di Bari Aldo Moro, 70125, Bari, Italy.
| |
Collapse
|
2
|
Wang L, Wu X, Su BSQ, Song R, Zhang JR, Zhu JJ. Enzymatic Biofuel Cell: Opportunities and Intrinsic Challenges in Futuristic Applications. ADVANCED ENERGY AND SUSTAINABILITY RESEARCH 2021. [DOI: 10.1002/aesr.202100031] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Linlin Wang
- State Key Laboratory of Analytical Chemistry for Life Science and Collaborative Innovation Center of Chemistry for Life Sciences School of Chemistry and Chemical Engineering Nanjing University Nanjing 210093 China
| | - Xiaoge Wu
- Environment Science and Engineering College Yangzhou University Yangzhou 225009 China
| | - B. S. Qi‐wen Su
- State Key Laboratory of Analytical Chemistry for Life Science and Collaborative Innovation Center of Chemistry for Life Sciences School of Chemistry and Chemical Engineering Nanjing University Nanjing 210093 China
| | - Rongbin Song
- State Key Laboratory of Analytical Chemistry for Life Science and Collaborative Innovation Center of Chemistry for Life Sciences School of Chemistry and Chemical Engineering Nanjing University Nanjing 210093 China
| | - Jian-Rong Zhang
- State Key Laboratory of Analytical Chemistry for Life Science and Collaborative Innovation Center of Chemistry for Life Sciences School of Chemistry and Chemical Engineering Nanjing University Nanjing 210093 China
| | - Jun-Jie Zhu
- State Key Laboratory of Analytical Chemistry for Life Science and Collaborative Innovation Center of Chemistry for Life Sciences School of Chemistry and Chemical Engineering Nanjing University Nanjing 210093 China
| |
Collapse
|
3
|
Xiao X, McGourty KD, Magner E. Enzymatic Biofuel Cells for Self-Powered, Controlled Drug Release. J Am Chem Soc 2020; 142:11602-11609. [PMID: 32510936 DOI: 10.1021/jacs.0c05749] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Self-powered drug-delivery systems based on conductive polymers (CPs) that eliminate the need for external power sources are of significant interest for use in clinical applications. Osmium redox polymer-mediated glucose/O2 enzymatic biofuel cells (EBFCs) were prepared with an additional CP-drug layer on the cathode. On discharging the EBFCs in the presence of glucose and dioxygen, model drug compounds incorporated in the CP layer were rapidly released with negligible amounts released when the EBFCs were held at open circuit. Controlled and ex situ release of three model compounds, ibuprofen (IBU), fluorescein (FLU), and 4',6-diamidino-2-phenylindole (DAPI), was achieved with this self-powered drug-release system. DAPI released in situ in cell culture media was incorporated into retinal pigment epithelium (RPE) cells. This work demonstrates a proof-of-concept responsive drug-release system that may be used in implantable devices.
Collapse
Affiliation(s)
- Xinxin Xiao
- Department of Chemical Sciences and Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland.,Department of Chemistry, Technical University of Denmark, Kongens Lyngby 2800, Denmark
| | - Kieran Denis McGourty
- Department of Chemical Sciences and Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland.,Department of Chemical Sciences and Health Research Institute, University of Limerick, Limerick V94 T9PX, Ireland
| | - Edmond Magner
- Department of Chemical Sciences and Bernal Institute, University of Limerick, Limerick V94 T9PX, Ireland
| |
Collapse
|
4
|
Mohammadniaei M, Park C, Min J, Sohn H, Lee T. Fabrication of Electrochemical-Based Bioelectronic Device and Biosensor Composed of Biomaterial-Nanomaterial Hybrid. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2019; 1064:263-296. [PMID: 30471039 PMCID: PMC7120487 DOI: 10.1007/978-981-13-0445-3_17] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
The field of bioelectronics has paved the way for the development of biochips, biomedical devices, biosensors and biocomputation devices. Various biosensors and biomedical devices have been developed to commercialize laboratory products and transform them into industry products in the clinical, pharmaceutical, environmental fields. Recently, the electrochemical bioelectronic devices that mimicked the functionality of living organisms in nature were applied to the use of bioelectronics device and biosensors. In particular, the electrochemical-based bioelectronic devices and biosensors composed of biomolecule-nanoparticle hybrids have been proposed to generate new functionality as alternatives to silicon-based electronic computation devices, such as information storage, process, computations and detection. In this chapter, we described the recent progress of bioelectronic devices and biosensors based on biomaterial-nanomaterial hybrid.
Collapse
Affiliation(s)
- Mohsen Mohammadniaei
- Department of Chemical and Biomolecular Engineering, Sogang University, Seoul, South Korea
| | - Chulhwan Park
- Department of Chemical Engineering, Kwangwoon University, Seoul, South Korea
| | - Junhong Min
- School of Integrative Engineering Chung-Ang University, Seoul, South Korea
| | - Hiesang Sohn
- Department of Chemical Engineering, Kwangwoon University, Seoul, South Korea.
| | - Taek Lee
- Department of Chemical Engineering, Kwangwoon University, Seoul, South Korea.
| |
Collapse
|
5
|
Xiao X, Xia HQ, Wu R, Bai L, Yan L, Magner E, Cosnier S, Lojou E, Zhu Z, Liu A. Tackling the Challenges of Enzymatic (Bio)Fuel Cells. Chem Rev 2019; 119:9509-9558. [PMID: 31243999 DOI: 10.1021/acs.chemrev.9b00115] [Citation(s) in RCA: 177] [Impact Index Per Article: 35.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
The ever-increasing demands for clean and sustainable energy sources combined with rapid advances in biointegrated portable or implantable electronic devices have stimulated intensive research activities in enzymatic (bio)fuel cells (EFCs). The use of renewable biocatalysts, the utilization of abundant green, safe, and high energy density fuels, together with the capability of working at modest and biocompatible conditions make EFCs promising as next generation alternative power sources. However, the main challenges (low energy density, relatively low power density, poor operational stability, and limited voltage output) hinder future applications of EFCs. This review aims at exploring the underlying mechanism of EFCs and providing possible practical strategies, methodologies and insights to tackle these issues. First, this review summarizes approaches in achieving high energy densities in EFCs, particularly, employing enzyme cascades for the deep/complete oxidation of fuels. Second, strategies for increasing power densities in EFCs, including increasing enzyme activities, facilitating electron transfers, employing nanomaterials, and designing more efficient enzyme-electrode interfaces, are described. The potential of EFCs/(super)capacitor combination is discussed. Third, the review evaluates a range of strategies for improving the stability of EFCs, including the use of different enzyme immobilization approaches, tuning enzyme properties, designing protective matrixes, and using microbial surface displaying enzymes. Fourth, approaches for the improvement of the cell voltage of EFCs are highlighted. Finally, future developments and a prospective on EFCs are envisioned.
Collapse
Affiliation(s)
- Xinxin Xiao
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China.,Department of Chemical Sciences and Bernal Institute , University of Limerick , Limerick V94 T9PX , Ireland
| | - Hong-Qi Xia
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China
| | - Ranran Wu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , 32 West seventh Road, Tianjin Airport Economic Area , Tianjin 300308 , China
| | - Lu Bai
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China
| | - Lu Yan
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China
| | - Edmond Magner
- Department of Chemical Sciences and Bernal Institute , University of Limerick , Limerick V94 T9PX , Ireland
| | - Serge Cosnier
- Université Grenoble-Alpes , DCM UMR 5250, F-38000 Grenoble , France.,Département de Chimie Moléculaire , UMR CNRS, DCM UMR 5250, F-38000 Grenoble , France
| | - Elisabeth Lojou
- Aix Marseille Univ, CNRS, BIP, Bioénergétique et Ingénierie des Protéines UMR7281 , Institut de Microbiologie de la Méditerranée, IMM , FR 3479, 31, chemin Joseph Aiguier 13402 Marseille , Cedex 20 , France
| | - Zhiguang Zhu
- Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences , 32 West seventh Road, Tianjin Airport Economic Area , Tianjin 300308 , China
| | - Aihua Liu
- Institute for Biosensing, and College of Life Sciences , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China.,College of Chemistry & Chemical Engineering , Qingdao University , 308 Ningxia Road , Qingdao 266071 , China.,School of Pharmacy, Medical College , Qingdao University , Qingdao 266021 , China
| |
Collapse
|
6
|
Construction of Multiple Switchable Sensors and Logic Gates Based on Carboxylated Multi-Walled Carbon Nanotubes/Poly( N, N-Diethylacrylamide). SENSORS 2018; 18:s18103358. [PMID: 30297654 PMCID: PMC6211007 DOI: 10.3390/s18103358] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 10/02/2018] [Accepted: 10/04/2018] [Indexed: 12/20/2022]
Abstract
In this work, binary hydrogel films based on carboxylated multi-walled carbon nanotubes/poly(N,N-diethylacrylamide) (c-MWCNTs/PDEA) were successfully polymerized and assembled on a glassy carbon (GC) electrode surface. The electroactive drug probes matrine and sophoridine in solution showed reversible thermal-, salt-, methanol- and pH-responsive switchable cyclic voltammetric (CV) behaviors at the film electrodes. The control experiments showed that the pH-responsive property of the system could be ascribed to the drug components of the solutions, whereas the thermal-, salt- and methanol-sensitive behaviors were attributed to the PDEA constituent of the films. The CV signals particularly, of matrine and sophoridine were significantly amplified by the electrocatalysis of c-MWCNTs in the films at 1.02 V and 0.91 V, respectively. Moreover, the addition of esterase, urease, ethyl butyrate, and urea to the solution also changed the pH of the system, and produced similar CV peaks as with dilution by HCl or NaOH. Based on these experiments, a 6-input/5-output logic gate system and 2-to-1 encoder were successfully constructed. The present system may lead to the development of novel types of molecular computing systems.
Collapse
|
7
|
Okhokhonin AV, Domanskyi S, Filipov Y, Gamella M, Kozitsina AN, Privman V, Katz E. Biomolecular Release from Alginate‐modified Electrode Triggered by Chemical Inputs Processed through a Biocatalytic Cascade – Integration of Biomolecular Computing and Actuation. ELECTROANAL 2017. [DOI: 10.1002/elan.201700810] [Citation(s) in RCA: 26] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Andrey V. Okhokhonin
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699 USA
- Department of Analytical Chemistry, Institute of Chemical Engineering Ural Federal University Yekaterinburg 620002 Russian Federation
| | | | - Yaroslav Filipov
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699 USA
- Department of Physics Clarkson University Potsdam NY 13699 USA
| | - Maria Gamella
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699 USA
| | - Alisa N. Kozitsina
- Department of Analytical Chemistry, Institute of Chemical Engineering Ural Federal University Yekaterinburg 620002 Russian Federation
| | | | - Evgeny Katz
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699 USA
| |
Collapse
|
8
|
Liu Y, Li J, Tschirhart T, Terrell JL, Kim E, Tsao C, Kelly DL, Bentley WE, Payne GF. Connecting Biology to Electronics: Molecular Communication via Redox Modality. Adv Healthc Mater 2017; 6. [PMID: 29045017 DOI: 10.1002/adhm.201700789] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 08/18/2017] [Indexed: 12/13/2022]
Abstract
Biology and electronics are both expert at for accessing, analyzing, and responding to information. Biology uses ions, small molecules, and macromolecules to receive, analyze, store, and transmit information, whereas electronic devices receive input in the form of electromagnetic radiation, process the information using electrons, and then transmit output as electromagnetic waves. Generating the capabilities to connect biology-electronic modalities offers exciting opportunities to shape the future of biosensors, point-of-care medicine, and wearable/implantable devices. Redox reactions offer unique opportunities for bio-device communication that spans the molecular modalities of biology and electrical modality of devices. Here, an approach to search for redox information through an interactive electrochemical probing that is analogous to sonar is adopted. The capabilities of this approach to access global chemical information as well as information of specific redox-active chemical entities are illustrated using recent examples. An example of the use of synthetic biology to recognize external molecular information, process this information through intracellular signal transduction pathways, and generate output responses that can be detected by electrical modalities is also provided. Finally, exciting results in the use of redox reactions to actuate biology are provided to illustrate that synthetic biology offers the potential to guide biological response through electrical cues.
Collapse
Affiliation(s)
- Yi Liu
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Jinyang Li
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Tanya Tschirhart
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Jessica L. Terrell
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Eunkyoung Kim
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Chen‐Yu Tsao
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Deanna L. Kelly
- Maryland Psychiatric Research Center University of Maryland School of Medicine Baltimore MD 21228 USA
| | - William E. Bentley
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| | - Gregory F. Payne
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering University of Maryland College Park MD 20742 USA
| |
Collapse
|
9
|
Gamella M, Privman M, Bakshi S, Melman A, Katz E. DNA Release from Fe
3+
‐Cross‐Linked Alginate Films Triggered by Logically Processed Biomolecular Signals: Integration of Biomolecular Computing and Actuation. Chemphyschem 2017; 18:1811-1821. [DOI: 10.1002/cphc.201700301] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 04/29/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Maria Gamella
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Marina Privman
- Empire State College State University of New York (SUNY) P.O. Box 908 Fort Drum NY 13602 USA
| | - Saira Bakshi
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Artem Melman
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Evgeny Katz
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| |
Collapse
|
10
|
Molinnus D, Poghossian A, Keusgen M, Katz E, Schöning MJ. Coupling of Biomolecular Logic Gates with Electronic Transducers: From Single Enzyme Logic Gates to Sense/Act/Treat Chips. ELECTROANAL 2017. [DOI: 10.1002/elan.201700208] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Denise Molinnus
- Institute of Nano- and Biotechnologies (INB); FH Aachen; Campus Jülich Heinrich-Mußmannstr. 1 52428 Jülich Germany
- Institute of Pharmaceutical Chemistry; Philipps-University Marburg; Wilhelm-Roser-Str. 2 35032 Marburg Germany
| | - Arshak Poghossian
- Institute of Nano- and Biotechnologies (INB); FH Aachen; Campus Jülich Heinrich-Mußmannstr. 1 52428 Jülich Germany
- Peter Grünberg Institute (PGI-8, Bioelectronics); Research Center Jülich; Wilhelm-Johnen-Str. 6 52425 Jülich Germany
| | - Michael Keusgen
- Institute of Pharmaceutical Chemistry; Philipps-University Marburg; Wilhelm-Roser-Str. 2 35032 Marburg Germany
| | - Evgeny Katz
- Department of Chemistry and Biomolecular Science; Clarkson University, NY; 13699-5810 Potsdam USA
| | - Michael J. Schöning
- Institute of Nano- and Biotechnologies (INB); FH Aachen; Campus Jülich Heinrich-Mußmannstr. 1 52428 Jülich Germany
- Peter Grünberg Institute (PGI-8, Bioelectronics); Research Center Jülich; Wilhelm-Johnen-Str. 6 52425 Jülich Germany
| |
Collapse
|
11
|
Scheja S, Domanskyi S, Gamella M, Wormwood KL, Darie CC, Poghossian A, Schöning MJ, Melman A, Privman V, Katz E. Glucose‐Triggered Insulin Release from Fe
3+
‐Cross‐linked Alginate Hydrogel: Experimental Study and Theoretical Modeling. Chemphyschem 2017; 18:1541-1551. [DOI: 10.1002/cphc.201700195] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2017] [Indexed: 12/22/2022]
Affiliation(s)
- Sabrina Scheja
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
- Institute of Nano- and Biotechnologies, FH Aachen Aachen University of Applied Sciences, Campus Jülich Heinrich-Mußmann-Str. 1 52428 Jülich Germany
| | - Sergii Domanskyi
- Department of Physics Clarkson University Potsdam NY 13699-5820 USA
| | - Maria Gamella
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Kelly L. Wormwood
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Costel C. Darie
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Arshak Poghossian
- Institute of Nano- and Biotechnologies, FH Aachen Aachen University of Applied Sciences, Campus Jülich Heinrich-Mußmann-Str. 1 52428 Jülich Germany
- Peter Grünberg Institute (PGI-8), Research Centre Jülich GmbH 52425 Jülich Germany
| | - Michael J. Schöning
- Institute of Nano- and Biotechnologies, FH Aachen Aachen University of Applied Sciences, Campus Jülich Heinrich-Mußmann-Str. 1 52428 Jülich Germany
- Peter Grünberg Institute (PGI-8), Research Centre Jülich GmbH 52425 Jülich Germany
| | - Artem Melman
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Vladimir Privman
- Department of Physics Clarkson University Potsdam NY 13699-5820 USA
| | - Evgeny Katz
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| |
Collapse
|
12
|
Domanskyi S, Privman V. Modeling and Modifying Response of Biochemical Processes for Biocomputing and Biosensing Signal Processing. EMERGENCE, COMPLEXITY AND COMPUTATION 2017. [DOI: 10.1007/978-3-319-33921-4_3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
|
13
|
Li M, Yu X, Liu H. A New Biocomputing Platform Based on Potential- and pH-Sensitive Bioelectrocatalysis and Layer-by-Layer Films Assembled with Graphene Derivatives and Weak Polyelectrolyte. Electrochim Acta 2016. [DOI: 10.1016/j.electacta.2016.10.128] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
|
14
|
Kim E, Liu Y, Ben-Yoav H, Winkler TE, Yan K, Shi X, Shen J, Kelly DL, Ghodssi R, Bentley WE, Payne GF. Fusing Sensor Paradigms to Acquire Chemical Information: An Integrative Role for Smart Biopolymeric Hydrogels. Adv Healthc Mater 2016; 5:2595-2616. [PMID: 27616350 PMCID: PMC5485850 DOI: 10.1002/adhm.201600516] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Revised: 06/26/2016] [Indexed: 12/14/2022]
Abstract
The Information Age transformed our lives but it has had surprisingly little impact on the way chemical information (e.g., from our biological world) is acquired, analyzed and communicated. Sensor systems are poised to change this situation by providing rapid access to chemical information. This access will be enabled by technological advances from various fields: biology enables the synthesis, design and discovery of molecular recognition elements as well as the generation of cell-based signal processors; physics and chemistry are providing nano-components that facilitate the transmission and transduction of signals rich with chemical information; microfabrication is yielding sensors capable of receiving these signals through various modalities; and signal processing analysis enhances the extraction of chemical information. The authors contend that integral to the development of functional sensor systems will be materials that (i) enable the integrative and hierarchical assembly of various sensing components (for chemical recognition and signal transduction) and (ii) facilitate meaningful communication across modalities. It is suggested that stimuli-responsive self-assembling biopolymers can perform such integrative functions, and redox provides modality-spanning communication capabilities. Recent progress toward the development of electrochemical sensors to manage schizophrenia is used to illustrate the opportunities and challenges for enlisting sensors for chemical information processing.
Collapse
Affiliation(s)
- Eunkyoung Kim
- Institute for Biosystems and Biotechnology Research, University of Maryland, College Park, MD, 20742, USA
- Fischell Department of Bioengineering, University of Maryland, College Park, MD, 20742, USA
| | - Yi Liu
- Institute for Biosystems and Biotechnology Research, University of Maryland, College Park, MD, 20742, USA
- Fischell Department of Bioengineering, University of Maryland, College Park, MD, 20742, USA
| | - Hadar Ben-Yoav
- Department of Biomedical Engineering, Ben-Gurion University of the Negev, Beer Sheva, 8410501, Israel
| | - Thomas E Winkler
- Institute for Systems Research, University of Maryland, College Park, MD, 20742, USA
- Department of Electrical and Computer Engineering, University of Maryland, College Park, MD, 20742, USA
| | - Kun Yan
- School of Resource and Environmental Science, Hubei Biomass-Resource Chemistry Environmental Biotechnology Key Laboratory, Wuhan University, Wuhan, 430079, China
| | - Xiaowen Shi
- School of Resource and Environmental Science, Hubei Biomass-Resource Chemistry Environmental Biotechnology Key Laboratory, Wuhan University, Wuhan, 430079, China
| | - Jana Shen
- Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore, MD, 21201, USA
| | - Deanna L Kelly
- Maryland Psychiatric Research Center, University of Maryland School of Medicine, Baltimore, MD, 21228, USA
| | - Reza Ghodssi
- Institute for Systems Research, University of Maryland, College Park, MD, 20742, USA
- Department of Electrical and Computer Engineering, University of Maryland, College Park, MD, 20742, USA
| | - William E Bentley
- Institute for Biosystems and Biotechnology Research, University of Maryland, College Park, MD, 20742, USA
- Fischell Department of Bioengineering, University of Maryland, College Park, MD, 20742, USA
| | - Gregory F Payne
- Institute for Biosystems and Biotechnology Research, University of Maryland, College Park, MD, 20742, USA.
- Fischell Department of Bioengineering, University of Maryland, College Park, MD, 20742, USA.
| |
Collapse
|
15
|
Yu X, Lian W, Zhang J, Liu H. Multi-input and -output logic circuits based on bioelectrocatalysis with horseradish peroxidase and glucose oxidase immobilized in multi-responsive copolymer films on electrodes. Biosens Bioelectron 2016; 80:631-639. [DOI: 10.1016/j.bios.2016.02.010] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2015] [Revised: 02/02/2016] [Accepted: 02/04/2016] [Indexed: 12/21/2022]
|
16
|
Gamella M, Guz N, Katz E. DNA Release from a Bioelectronic Interface Stimulated by a DNA Signal – Amplification of DNA Signals. ELECTROANAL 2016. [DOI: 10.1002/elan.201600077] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Maria Gamella
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Nataliia Guz
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| | - Evgeny Katz
- Department of Chemistry and Biomolecular Science Clarkson University Potsdam NY 13699-5810 USA
| |
Collapse
|
17
|
Privman V, Domanskyi S, Luz RAS, Guz N, Glasser ML, Katz E. Diffusion of Oligonucleotides from within Iron-Cross-Linked, Polyelectrolyte-Modified Alginate Beads: A Model System for Drug Release. Chemphyschem 2016; 17:976-84. [PMID: 26762598 DOI: 10.1002/cphc.201501186] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Indexed: 12/24/2022]
Abstract
An analytical model to describe diffusion of oligonucleotides from stable hydrogel beads is developed and experimentally verified. The synthesized alginate beads are Fe(3+) -cross-linked and polyelectrolyte-doped for uniformity and stability at physiological pH. Data on diffusion of oligonucleotides from inside the beads provide physical insights into the volume nature of the immobilization of a fraction of oligonucleotides due to polyelectrolyte cross-linking, that is, the absence of a surface-layer barrier in this case. Furthermore, the results suggest a new simple approach to measuring the diffusion coefficient of mobile oligonucleotide molecules inside hydrogels. The considered alginate beads provide a model for a well-defined component in drug-release systems and for the oligonucleotide-release transduction steps in drug-delivering and biocomputing applications. This is illustrated by destabilizing the beads with citrate, which induces full oligonucleotide release with nondiffusional kinetics.
Collapse
Affiliation(s)
- Vladimir Privman
- Department of Physics, Clarkson University, Potsdam, NY, 13676, USA.
| | - Sergii Domanskyi
- Department of Physics, Clarkson University, Potsdam, NY, 13676, USA
| | - Roberto A S Luz
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY, 13676, USA.,Instituto de Química de São Carlos, Universidade de São Paulo, São Carlos, SP, 13560-970, Brazil
| | - Nataliia Guz
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY, 13676, USA
| | | | - Evgeny Katz
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY, 13676, USA.
| |
Collapse
|
18
|
Peng X, Liu Y, Bentley WE, Payne GF. Electrochemical Fabrication of Functional Gelatin-Based Bioelectronic Interface. Biomacromolecules 2016; 17:558-63. [DOI: 10.1021/acs.biomac.5b01491] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Xianghong Peng
- Institute
for Bioscience and Biotechnology Research, University of Maryland, College
Park, Maryland 20742, United States
- Key
Laboratory of Optoelectronic Chemical Materials and Devices, Ministry
of Education, Jianghan University, Wuhan 430056, People’s Republic of China
| | - Yi Liu
- Institute
for Bioscience and Biotechnology Research, University of Maryland, College
Park, Maryland 20742, United States
| | - William E. Bentley
- Institute
for Bioscience and Biotechnology Research, University of Maryland, College
Park, Maryland 20742, United States
- Fischell
Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| | - Gregory F. Payne
- Institute
for Bioscience and Biotechnology Research, University of Maryland, College
Park, Maryland 20742, United States
- Fischell
Department of Bioengineering, University of Maryland, College Park, Maryland 20742, United States
| |
Collapse
|
19
|
Poghossian A, Katz E, Schöning MJ. Enzyme logic AND-Reset and OR-Reset gates based on a field-effect electronic transducer modified with multi-enzyme membrane. Chem Commun (Camb) 2015; 51:6564-7. [PMID: 25771862 DOI: 10.1039/c5cc01362c] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Capacitive field-effect sensors modified with a multi-enzyme membrane have been applied for an electronic transduction of biochemical signals processed by enzyme-based AND-Reset and OR-Reset logic gates. The local pH change at the sensor surface induced by the enzymatic reaction was used for the activation of the Reset function for the first time.
Collapse
Affiliation(s)
- A Poghossian
- Institute of Nano- and Biotechnologies, Aachen University of Applied Sciences, Campus Jülich, Heinrich-Mußmann-Str. 1, D-52428 Jülich, Germany.
| | | | | |
Collapse
|
20
|
Katz E, Minko S. Enzyme-based logic systems interfaced with signal-responsive materials and electrodes. Chem Commun (Camb) 2015; 51:3493-500. [PMID: 25578785 DOI: 10.1039/c4cc09851j] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Enzyme-based biocomputing systems were interfaced with signal-responsive membranes and electrodes resulting in bioelectronic devices switchable by logically processed biomolecular signals. "Smart" membranes, electrodes, biofuel cells, memristors and substance-releasing systems were activated by various combinations of biomolecular signals in the pre-programmed way implemented in biocatalytic cascades mimicking logic networks.
Collapse
Affiliation(s)
- Evgeny Katz
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699, USA.
| | | |
Collapse
|
21
|
Tobin PH, Richards DH, Callender RA, Wilson CJ. Protein engineering: a new frontier for biological therapeutics. Curr Drug Metab 2015; 15:743-56. [PMID: 25495737 DOI: 10.2174/1389200216666141208151524] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2014] [Revised: 11/27/2014] [Accepted: 12/07/2014] [Indexed: 12/14/2022]
Abstract
Protein engineering holds the potential to transform the metabolic drug landscape through the development of smart, stimulusresponsive drug systems. Protein therapeutics are a rapidly expanding segment of Food and Drug Administration approved drugs that will improve clinical outcomes over the long run. Engineering of protein therapeutics is still in its infancy, but recent general advances in protein engineering capabilities are being leveraged to yield improved control over both pharmacokinetics and pharmacodynamics. Stimulus- responsive protein therapeutics are drugs which have been designed to be metabolized under targeted conditions. Protein engineering is being utilized to develop tailored smart therapeutics with biochemical logic. This review focuses on applications of targeted drug neutralization, stimulus-responsive engineered protein prodrugs, and emerging multicomponent smart drug systems (e.g., antibody-drug conjugates, responsive engineered zymogens, prospective biochemical logic smart drug systems, drug buffers, and network medicine applications).
Collapse
Affiliation(s)
| | | | | | - Corey J Wilson
- Department of Chemical and Environmental Engineering, Yale University, New Haven, Connecticut 06520-8286, USA.
| |
Collapse
|
22
|
Zhou M. Recent Progress on the Development of Biofuel Cells for Self-Powered Electrochemical Biosensing and Logic Biosensing: A Review. ELECTROANAL 2015. [DOI: 10.1002/elan.201500173] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
|
23
|
Mailloux S, Gerasimova YV, Guz N, Kolpashchikov DM, Katz E. Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems. Angew Chem Int Ed Engl 2015; 54:6562-6. [PMID: 25864379 PMCID: PMC4495919 DOI: 10.1002/anie.201411148] [Citation(s) in RCA: 101] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2014] [Revised: 02/06/2015] [Indexed: 11/09/2022]
Abstract
Molecular computing based on enzymes or nucleic acids has attracted a great deal of attention due to the perspectives of controlling living systems in the way we control electronic computers. Enzyme-based computational systems can respond to a great variety of small molecule inputs. They have the advantage of signal amplification and highly specific recognition. DNA computing systems are most often controlled by oligonucleotide inputs/outputs and are capable of sophisticated computing as well as controlling gene expressions. Here, we developed an interface that enables communication of otherwise incompatible nucleic-acid and enzyme-computational systems. The enzymatic system processes small molecules as inputs and produces NADH as an output. The NADH output triggers electrochemical release of an oligonucleotide, which is accepted by a DNA computational system as an input. This interface is universal because the enzymatic and DNA computing systems are independent of each other in composition and complexity.
Collapse
Affiliation(s)
- Shay Mailloux
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810 (USA)
| | - Yulia V Gerasimova
- Chemistry Department, University of Central Florida, 4000 Central Florida Boulevard, Orlando, FL 32816-2366 (USA)
| | - Nataliia Guz
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810 (USA)
| | - Dmitry M Kolpashchikov
- Chemistry Department, University of Central Florida, 4000 Central Florida Boulevard, Orlando, FL 32816-2366 (USA).
| | - Evgeny Katz
- Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, NY 13699-5810 (USA).
| |
Collapse
|
24
|
Katz E, Pingarrón JM, Mailloux S, Guz N, Gamella M, Melman G, Melman A. Substance Release Triggered by Biomolecular Signals in Bioelectronic Systems. J Phys Chem Lett 2015; 6:1340-1347. [PMID: 26263133 DOI: 10.1021/acs.jpclett.5b00118] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
A new approach to bioelectronic Sense-and-Act systems was developed with the use of modified electrodes performing sensing and substance-releasing functions. The sensing electrode was activated by biomolecular/biological signals ranging from small biomolecules to proteins and bacterial cells. The activated sensing electrode generated reductive potential and current, which stimulated dissolution of an Fe(3+)-cross-linked alginate matrix on the second connected electrode resulting in the release of loaded biochemical species with different functionalities. Drug-mimicking species, antibacterial drugs, and enzymes activating a biofuel cell were released and tested for various biomedical and biotechnological applications. The studied systems offer great versatility for future applications in controlled drug release and personalized medicine. Their future applications in implantable devices with autonomous operation are proposed.
Collapse
Affiliation(s)
- Evgeny Katz
- †Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, New York 13699-5810, United States
| | - José M Pingarrón
- ‡Department of Analytical Chemistry, Complutense University of Madrid, 28040 Madrid, Spain
| | - Shay Mailloux
- †Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, New York 13699-5810, United States
| | - Nataliia Guz
- †Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, New York 13699-5810, United States
| | - Maria Gamella
- †Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, New York 13699-5810, United States
- ‡Department of Analytical Chemistry, Complutense University of Madrid, 28040 Madrid, Spain
| | - Galina Melman
- †Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, New York 13699-5810, United States
| | - Artem Melman
- †Department of Chemistry and Biomolecular Science, Clarkson University, Potsdam, New York 13699-5810, United States
| |
Collapse
|
25
|
Mailloux S, Gerasimova YV, Guz N, Kolpashchikov DM, Katz E. Bridging the Two Worlds: A Universal Interface between Enzymatic and DNA Computing Systems. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201411148] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
26
|
Liu Y, Wu HC, Chhuan M, Terrell JL, Tsao CY, Bentley WE, Payne GF. Functionalizing Soft Matter for Molecular Communication. ACS Biomater Sci Eng 2015; 1:320-328. [PMID: 26501127 PMCID: PMC4603720 DOI: 10.1021/ab500160e] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2014] [Accepted: 03/26/2015] [Indexed: 11/28/2022]
Abstract
![]()
The
information age was enabled by advances in microfabrication
and communication theory that allowed information to be processed
by electrons and transmitted by electromagnetic radiation. Despite
immense capabilities, microelectronics has limited abilities to access
and participate in the molecular-based communication that characterizes
our biological world. Here, we use biological materials and methods
to create components and fabricate devices to perform simple molecular
communication functions based on bacterial quorum sensing (QS). Components
were created by protein engineering to generate a multidomain fusion
protein capable of sending a molecular QS signal, and by synthetic
biology to engineer E. coli to receive and report
this QS signal. The device matrix was formed using stimuli-responsive
hydrogel-forming biopolymers (alginate and gelatin). Assembly of the
components within the device matrix was achieved by physically entrapping
the cell-based components, and covalently conjugating the protein-based
components using the enzyme microbial transglutaminase. We demonstrate
simple devices that can send or receive a molecular QS signal to/from
the surrounding medium, and a two-component device in which one component
generates the signal (i.e., issues a command) that is acted upon by
the second component. These studies illustrate the broad potential
of biofabrication to generate molecular communication devices.
Collapse
Affiliation(s)
- Yi Liu
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| | - Hsuan-Chen Wu
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| | - Melanie Chhuan
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| | - Jessica L Terrell
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| | - Chen-Yu Tsao
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| | - William E Bentley
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| | - Gregory F Payne
- Institute for Bioscience and Biotechnology Research and Fischell Department of Bioengineering, University of Maryland , College Park, Maryland 20742, United States
| |
Collapse
|
27
|
Fratto BE, Katz E. Reversible Logic Gates Based on Enzyme-Biocatalyzed Reactions and Realized in Flow Cells: A Modular Approach. Chemphyschem 2015; 16:1405-15. [DOI: 10.1002/cphc.201500042] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2015] [Indexed: 01/06/2023]
|
28
|
Gamella M, Guz N, Pingarrón JM, Aslebagh R, Darie CC, Katz E. A bioelectronic system for insulin release triggered by ketone body mimicking diabetic ketoacidosis in vitro. Chem Commun (Camb) 2015; 51:7618-21. [DOI: 10.1039/c5cc01498k] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
A bioelectronic system was activated with a biomarker of diabetic ketoacidosis to release insulin operating as a Sense-and-Act device.
Collapse
Affiliation(s)
- Maria Gamella
- Department of Chemistry and Biomolecular Science
- Clarkson University
- Potsdam
- USA
- Department of Analytical Chemistry
| | - Nataliia Guz
- Department of Chemistry and Biomolecular Science
- Clarkson University
- Potsdam
- USA
| | - José M. Pingarrón
- Department of Analytical Chemistry
- Complutense University of Madrid
- Madrid
- Spain
| | - Roshanak Aslebagh
- Department of Chemistry and Biomolecular Science
- Clarkson University
- Potsdam
- USA
| | - Costel C. Darie
- Department of Chemistry and Biomolecular Science
- Clarkson University
- Potsdam
- USA
| | - Evgeny Katz
- Department of Chemistry and Biomolecular Science
- Clarkson University
- Potsdam
- USA
| |
Collapse
|
29
|
Gamella M, Guz N, Mailloux S, Pingarrón JM, Katz E. Antibacterial Drug Release Electrochemically Stimulated by the Presence of Bacterial Cells - Theranostic Approach. ELECTROANAL 2014. [DOI: 10.1002/elan.201400473] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
|
30
|
Liu S, Wang L, Lian W, Liu H, Li CZ. Logic Gate System with Three Outputs and Three Inputs Based on Switchable Electrocatalysis of Glucose by Glucose Oxidase Entrapped in Chitosan Films. Chem Asian J 2014; 10:225-30. [DOI: 10.1002/asia.201402927] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Indexed: 11/11/2022]
|
31
|
Buckhout-White S, Claussen JC, Melinger JS, Dunningham Z, Ancona MG, Goldman ER, Medintz IL. A triangular three-dye DNA switch capable of reconfigurable molecular logic. RSC Adv 2014. [DOI: 10.1039/c4ra10580j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
|
32
|
Privman V, Domanskyi S, Mailloux S, Holade Y, Katz E. Kinetic Model for a Threshold Filter in an Enzymatic System for Bioanalytical and Biocomputing Applications. J Phys Chem B 2014; 118:12435-43. [DOI: 10.1021/jp508224y] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Affiliation(s)
| | | | | | - Yaovi Holade
- Université de Poitiers, IC2MP, UMR-CNRS 7285, 4 rue Michel Brunet, B27 TSA 51106, 86073 Poitiers Cedex 9, France
| | | |
Collapse
|
33
|
Gamella M, Guz N, Mailloux S, Pingarrón JM, Katz E. Activation of a biocatalytic electrode by removing glucose oxidase from the surface--application to signal triggered drug release. ACS APPLIED MATERIALS & INTERFACES 2014; 6:13349-13354. [PMID: 25084606 DOI: 10.1021/am504561d] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
A biocatalytic electrode activated by pH signals was prepared with a multilayered nanostructured interface including PQQ-dependent glucose dehydrogenase (PQQ-GDH) directly associated with the conducting support and glucose oxidase (GOx) located on the external interface. GOx was immobilized through a pH-signal-cleavable linker composed of an iminobiotin/avidin complex. In the presence of GOx, glucose was intercepted at the external interface and biocatalytically oxidized without current generation, thus keeping the electrode in its nonactive state. When the pH value was lowered from pH 7.5 to 4.5 the iminobiotin/avidin complex was cleaved and GOx was removed from the interface allowing glucose penetration to the electrode surface where it was oxidized by PQQ-GDH yielding a bioelectrocatalytic current, thus switching the electrode to its active state. This process was used to trigger a drug-mimicking release process from another connected electrode. Furthermore, the pH-switchable electrode can be activated by biochemical signals logically processed by biocatalytic systems mimicking various Boolean gates. Therefore, the developed switchable electrode can interface biomolecular computing/sensing systems with drug-release processes.
Collapse
Affiliation(s)
- Maria Gamella
- Department of Chemistry and Biomolecular Science, Clarkson University , Potsdam, New York 13699-5810, United States
| | | | | | | | | |
Collapse
|
34
|
Mailloux S, Guz N, Gamella Carballo M, Pingarrón JM, Katz E. Model system for targeted drug release triggered by immune-specific signals. Anal Bioanal Chem 2014; 406:4825-9. [DOI: 10.1007/s00216-014-7936-z] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2014] [Revised: 05/23/2014] [Accepted: 05/28/2014] [Indexed: 11/25/2022]
|
35
|
Mailloux S, Guz N, Zakharchenko A, Minko S, Katz E. Majority and minority gates realized in enzyme-biocatalyzed systems integrated with logic networks and interfaced with bioelectronic systems. J Phys Chem B 2014; 118:6775-84. [PMID: 24873717 DOI: 10.1021/jp504057u] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Biocatalytic reactions operating in parallel and resulting in reduction of NAD(+) or oxidation of NADH were used to mimic 3-input majority and minority logic gates, respectively. The substrates corresponding to the enzyme reactions were used as the input signals. When the input signals were applied at their high concentrations, defined as logic 1 input values, the corresponding biocatalytic reactions were activated, resulting in changes of the NADH concentration defined as the output signal. The NADH concentration changes were dependent on the number of parallel reactions activated by the input signals. The absence of the substrates, meaning their logic 0 input values, kept the reactions mute with no changes in the NADH concentration. In the system mimicking the majority function, the enzyme-biocatalyzed reactions resulted in a higher production of NADH when more than one input signal was applied at the logic 1 value. Another system mimicking the minority function consumed more NADH, thus leaving a smaller residual output signal, when more than one input signal was applied at the logic 1 value. The performance of the majority gate was improved by processing the output signal through a filter system in which another biocatalytic reaction consumed a fraction of the output signal, thus reducing its physical value to zero when the logic 0 value was obtained. The majority gate was integrated with a preceding AND logic gate to illustrate the possibility of complex networks. The output signal, NADH, was also used to activate a process mimicking drug release, thus illustrating the use of the majority gate in decision-making biomedical systems. The 3-input majority gate was also used as a switchable AND/OR gate when one of the input signals was reserved as a command signal, switching the logic operation for processing of the other two inputs. Overall, the designed majority and minority logic gates demonstrate novel functions of biomolecular information processing systems.
Collapse
Affiliation(s)
- Shay Mailloux
- Department of Chemistry and Biomolecular Science, Clarkson University , Potsdam, New York 13699-5810, United States
| | | | | | | | | |
Collapse
|
36
|
MacVittie K, Katz E. Self-powered electrochemical memristor based on a biofuel cell – towards memristors integrated with biocomputing systems. Chem Commun (Camb) 2014; 50:4816-9. [DOI: 10.1039/c4cc01540a] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|