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Feng R, Zhao J, Li X, Dong S, Ma D. Structural and Mechanistic Insights into a Novel Monooxygenase for Poly(acrylic acid) Biodegradation. Int J Mol Sci 2024; 25:8871. [PMID: 39201558 PMCID: PMC11354265 DOI: 10.3390/ijms25168871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 08/09/2024] [Accepted: 08/11/2024] [Indexed: 09/02/2024] Open
Abstract
Polyacrylamide (PAM) is a high-molecular-weight polymer with extensive applications. However, the inefficient natural degradation of PAM results in environmental accumulation of the polymer. Biodegradation is an environmentally friendly approach in the field of PAM treatment. The first phase of PAM biodegradation is the deamination of PAM, forming the product poly(acrylic acid) (PAA). The second phase of PAM biodegradation involves the cleavage of PAA into small molecules, which is a crucial step in the degradation pathway of PAM. However, the enzyme that catalyzes the degradation of PAA and the molecular mechanism remain unclear. Here, a novel monooxygenase PCX02514 is identified as the key enzyme for PAA degradation. Through biochemical experiments, the monooxygenase PCX02514 oxidizes PAA with the participation of NADPH, causing the cleavage of carbon chains and a decrease in the molecular weight of PAA. In addition, the crystal structure of the monooxygenase PCX02514 is solved at a resolution of 1.97 Å. The active pocket is in a long cavity that extends from the C-terminus of the TIM barrel to the protein surface and exhibits positive electrostatic potential, thereby causing the migration of oxygen-negative ions into the active pocket and facilitating the reaction between the substrates and monooxygenase PCX02514. Moreover, Arg10-Arg125-Ser186-Arg187-His253 are proposed as potential active sites in monooxygenase PCX02514. Our research characterizes the molecular mechanism of this monooxygenase, providing a theoretical basis and valuable tools for PAM bioremediation.
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Affiliation(s)
| | | | | | | | - Dan Ma
- College of Life Sciences, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding 071002, China; (R.F.); (J.Z.); (X.L.); (S.D.)
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2
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Wang Y, Guo M, Xu X. Nanoproteases: Alternatives to Natural Protease for Biotechnological Applications. Chemistry 2024; 30:e202401178. [PMID: 38705854 DOI: 10.1002/chem.202401178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 04/26/2024] [Accepted: 04/29/2024] [Indexed: 05/07/2024]
Abstract
Some nanomaterials with intrinsic protease-like activity have the advantages of good stability, biosafety, low price, large-scale preparation and unique property of nanomaterials, which are promising alternatives for natural proteases in various applications. An especial term, "nanoprotease", has been coined to stress the intrinsic proteolytic property of these nanomaterials. As a new generation of artificial proteases, they have become a burgeoning field, attracting many researchers to design and synthesize high performance nanoproteases. In this review, we summarize recent progress on all types of nanoproteases with regard of their activity, mechanism and application and introduce a new and effective strategy for engineering high-performance nanoproteases. In addition, we discuss the challenges and opportunities of nanoprotease research in the future.
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Affiliation(s)
- Yaru Wang
- Department of Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, 230026, P. R. China
| | - Mingxiu Guo
- Department of Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, 230026, P. R. China
| | - Xiaolong Xu
- Department of Chemistry, School of Chemistry and Materials Science, University of Science and Technology of China, Hefei, 230026, P. R. China
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3
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Wang Z, Li W, Hou X. Probing the interaction mechanism of SDBS with AtPrxQ from Arabidopsis thaliana: Insight into the molecular toxicity to plants. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 313:124118. [PMID: 38461562 DOI: 10.1016/j.saa.2024.124118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2023] [Revised: 02/28/2024] [Accepted: 03/03/2024] [Indexed: 03/12/2024]
Abstract
As the most universally used anionic surfactant, ubiquitous existence and accumulation of sodium dodecyl benzene sulfonate (SDBS) in the environment has inevitably imposed the associated harmful impacts to plants due to producing excessive reactive oxygen species. However, the underlying hazardous mechanism of the SDBS-induced oxidative stress to plants at molecular level has never been reported. Here, the molecular interaction of AtPrxQ with SDBS was explored for the first time. The intrinsic fluorescence of AtPrxQ was quenched based on static quenching, and a single binding site of AtPrxQ towards SDBS and the potential interaction forces driven by hydrophobic interactions were predicted from thermodynamic parameters and molecular docking results. Besides, the interaction pattern of AtPrxQ and SDBS was also confirmed by the bio-layer interferometry with moderate binding affinity. Moreover, the structural changes of AtPrxQ along with the destructions of the protein framework and the hydrophobic enhancement around aromatic amino acids were observed upon binding with SDBS. At last, the toxic effects produced by SDBS on peroxidase activities and Arabidopsis seedlings growth were also characterized. Thus this work may provide insights on the molecular interactions of AtPrxQ with SDBS and assessments on the biological hazards of SDBS to plants even for the agriculture.
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Affiliation(s)
- Zhong Wang
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Wanting Li
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Xiaomin Hou
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China.
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Salazar Marcano DE, Savić ND, Declerck K, Abdelhameed SAM, Parac-Vogt TN. Reactivity of metal-oxo clusters towards biomolecules: from discrete polyoxometalates to metal-organic frameworks. Chem Soc Rev 2024; 53:84-136. [PMID: 38015569 DOI: 10.1039/d3cs00195d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]
Abstract
Metal-oxo clusters hold great potential in several fields such as catalysis, materials science, energy storage, medicine, and biotechnology. These nanoclusters of transition metals with oxygen-based ligands have also shown promising reactivity towards several classes of biomolecules, including proteins, nucleic acids, nucleotides, sugars, and lipids. This reactivity can be leveraged to address some of the most pressing challenges we face today, from fighting various diseases, such as cancer and viral infections, to the development of sustainable and environmentally friendly energy sources. For instance, metal-oxo clusters and related materials have been shown to be effective catalysts for biomass conversion into renewable fuels and platform chemicals. Furthermore, their reactivity towards biomolecules has also attracted interest in the development of inorganic drugs and bioanalytical tools. Additionally, the structural versatility of metal-oxo clusters allows for the efficiency and selectivity of the biomolecular reactions they promote to be readily tuned, thereby providing a pathway towards reaction optimization. The properties of the catalyst can also be improved through incorporation into solid supports or by linking metal-oxo clusters together to form Metal-Organic Frameworks (MOFs), which have been demonstrated to be powerful heterogeneous catalysts. Therefore, this review aims to provide a comprehensive and critical analysis of the state of the art on biomolecular transformations promoted by metal-oxo clusters and their applications, with a particular focus on structure-activity relationships.
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Affiliation(s)
| | - Nada D Savić
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium.
| | - Kilian Declerck
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium.
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Barba‐Bon A, Gumerova NI, Tanuhadi E, Ashjari M, Chen Y, Rompel A, Nau WM. All-Inorganic Polyoxometalates Act as Superchaotropic Membrane Carriers. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2309219. [PMID: 37943506 PMCID: PMC11475408 DOI: 10.1002/adma.202309219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/30/2023] [Indexed: 11/10/2023]
Abstract
Polyoxometalates (POMs) are known antitumoral, antibacterial, antiviral, and anticancer agents and considered as next-generation metallodrugs. Herein, a new biological functionality in neutral physiological media, where selected mixed-metal POMs are sufficiently stable and able to affect membrane transport of impermeable, hydrophilic, and cationic peptides (heptaarginine, heptalysine, protamine, and polyarginine) is reported. The uptake is observed in both, model membranes as well as cells, and attributed to the superchaotropic properties of the polyoxoanions. In view of the structural diversity of POMs these findings pave the way toward their biomedical application in drug delivery or for cell-biological uptake studies with biological effector molecules or staining agents.
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Affiliation(s)
- Andrea Barba‐Bon
- School of ScienceConstructor UniversityCampus Ring 128759BremenGermany
| | - Nadiia I. Gumerova
- Universität WienFakultät für ChemieInstitut für Biophysikalische ChemieJosef‐Holaubek‐Platz 2Wien1090Austria
| | - Elias Tanuhadi
- Universität WienFakultät für ChemieInstitut für Biophysikalische ChemieJosef‐Holaubek‐Platz 2Wien1090Austria
| | - Maryam Ashjari
- School of ScienceConstructor UniversityCampus Ring 128759BremenGermany
| | - Yao Chen
- School of ScienceConstructor UniversityCampus Ring 128759BremenGermany
| | - Annette Rompel
- Universität WienFakultät für ChemieInstitut für Biophysikalische ChemieJosef‐Holaubek‐Platz 2Wien1090Austria
| | - Werner M. Nau
- School of ScienceConstructor UniversityCampus Ring 128759BremenGermany
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Li B, Xu X, Lv Y, Wu Z, He L, Song YF. Polyoxometalates as Potential Artificial Enzymes toward Biological Applications. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2024; 20:e2305539. [PMID: 37699754 DOI: 10.1002/smll.202305539] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/09/2023] [Indexed: 09/14/2023]
Abstract
Artificial enzymes, as alternatives to natural enzymes, have attracted enormous attention in the fields of catalysis, biosensing, diagnostics, and therapeutics because of their high stability and low cost. Polyoxometalates (POMs), a class of inorganic metal oxides, have recently shown great potential in mimicking enzyme activity due to their well-defined structure, tunable composition, high catalytic efficiency, and easy storage properties. This review focuses on the recent advances in POM-based artificial enzymes. Different types of POMs and their derivatives-based mimetic enzyme functions are covered, as well as the corresponding catalytic mechanisms (where available). An overview of the broad applications of representative POM-based artificial enzymes from biosensing to theragnostic is provided. Insight into the current challenges and the future directions for POMs-based artificial enzymes is discussed.
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Affiliation(s)
- Bole Li
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Xiaotong Xu
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Yanfei Lv
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Zhaohui Wu
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Lei He
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
| | - Yu-Fei Song
- State Key Laboratory of Chemical Resource Engineering, Beijing University of Chemical Technology, Beijing, 100029, P. R. China
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Lentink S, Salazar Marcano DE, Moussawi MA, Vandebroek L, Van Meervelt L, Parac-Vogt TN. Fine-tuning non-covalent interactions between hybrid metal-oxo clusters and proteins. Faraday Discuss 2023; 244:21-38. [PMID: 37102318 DOI: 10.1039/d2fd00161f] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Interactions between the protein Hen Egg White Lysozyme (HEWL) and three different hybrid Anderson-Evans polyoxometalate clusters - AE-NH2 (δ-[MnMo6O18{(OCH2)3CNH2}2]3-), AE-CH3 (δ-[MnMo6O18{(OCH2)3CCH3}2]3-) and AE-Biot (δ-[MnMo6O18{(OCH2)3CNHCOC9H15N2OS}2]3-) - were studied via tryptophan fluorescence spectroscopy and single crystal X-ray diffraction. Quenching of tryptophan fluorescence was observed in the presence of all three hybrid polyoxometalate clusters (HPOMs), but the extent of quenching and the binding affinity were greatly dependent on the nature of the organic groups attached to the cluster. Control experiments further revealed the synergistic effect of the anionic polyoxometalate core and organic ligands towards enhanced protein interactions. Furthermore, the protein was co-crystallised with each of the three HPOMs, resulting in four different crystal structures, thus allowing for the binding modes of HPOM-protein interactions to be investigated with near-atomic precision. All crystal structures displayed a unique mode of binding of the HPOMs to the protein, with both functionalisation and the pH of the crystallisation conditions influencing the interactions. From the crystal structures, it was determined that HPOM-protein non-covalent complexes formed through a combination of electrostatic attraction between the polyoxometalate cluster and positively charged surface regions of HEWL, and direct and water-mediated hydrogen bonds with both the metal-oxo inorganic core and the functional groups of the ligand, where possible. Hence, functionalisation of metal-oxo clusters shows great potential in tuning their interactions with proteins, which is of interest for several biomedical applications.
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Affiliation(s)
- Sarah Lentink
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven 3001, Belgium.
| | | | - Mhamad Aly Moussawi
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven 3001, Belgium.
| | - Laurens Vandebroek
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven 3001, Belgium.
| | - Luc Van Meervelt
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Leuven 3001, Belgium.
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8
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Salazar Marcano D, Savić ND, Abdelhameed SAM, de Azambuja F, Parac-Vogt TN. Exploring the Reactivity of Polyoxometalates toward Proteins: From Interactions to Mechanistic Insights. JACS AU 2023; 3:978-990. [PMID: 37124292 PMCID: PMC10131212 DOI: 10.1021/jacsau.3c00011] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/05/2023] [Revised: 01/31/2023] [Accepted: 02/01/2023] [Indexed: 05/03/2023]
Abstract
The latest advances in the study of the reactivity of metal-oxo clusters toward proteins showcase how fundamental insights obtained so far open new opportunities in biotechnology and medicine. In this Perspective, these studies are discussed through the lens of the reactivity of a family of soluble anionic metal-oxo nanoclusters known as polyoxometalates (POMs). POMs act as catalysts in a wide range of reactions with several different types of biomolecules and have promising therapeutic applications due to their antiviral, antibacterial, and antitumor activities. However, the lack of a detailed understanding of the mechanisms behind biochemically relevant reactions-particularly with complex biological systems such as proteins-still hinders further developments. Hence, in this Perspective, special attention is given to reactions of POMs with peptides and proteins showcasing a molecular-level understanding of the reaction mechanism. In doing so, we aim to highlight both existing limitations and promising directions of future research on the reactivity of metal-oxo clusters toward proteins and beyond.
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Huo C, Zhao Q, Liu R, Li X, He F, Jing M, Wan J, Zong W. Cytotoxicity and Oxidative Stress Effects of Indene on Coelomocytes of Earthworm ( Eisenia foetida): Combined Analysis at Cellular and Molecular Levels. TOXICS 2023; 11:136. [PMID: 36851011 PMCID: PMC9961689 DOI: 10.3390/toxics11020136] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2022] [Revised: 01/24/2023] [Accepted: 01/28/2023] [Indexed: 06/18/2023]
Abstract
Indene (IND) is a kind of important aromatic hydrocarbon that is extracted from coal tar and has important applications in industry and biology. In the process of production and utilization, it is easy to enter the soil and produce toxic effects on the soil or organisms. The earthworm is an important organism in the soil. The toxicity of indene on earthworm coelomocytes is rarely studied, and the oxidative stress effects of IND on earthworm coelomocytes remain unclear. In this study, coelomocytes from earthworms and antioxidant enzymes were selected as the research targets. In addition, IND caused oxidative stress, and its related toxic effects and mechanisms were systematically studied and evaluated at the cellular and molecular levels. The results showed that IND destroyed the redox balance in earthworm coelomocytes, and the large accumulation of reactive oxygen species (ROS) significantly inhibited the activities of the antioxidant system, including superoxide dismutase (SOD), catalase (CAT), and glutathione (GSH), and caused lipid peroxidation and membrane permeability changes, resulting in a decrease in cell viability to 74.5% of the control group. At the molecular level, IND was bound to SOD by the arene-H bond, and the binding constant was 4.95 × 103. IND changed the secondary structure of the SOD and led to a loosening of the structure of the SOD peptide chain. Meanwhile, IND caused SOD fluorescence sensitization, and molecular simulation showed that IND was mainly bound to the junction of SOD subunits. We hypothesized that the changes in SOD structure led to the increase in SOD activity. This research can provide a scientific basis for IND toxicity evaluation.
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Affiliation(s)
- Chengqian Huo
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, 72# Jimo Binhai Road, Qingdao 266237, China
| | - Qiang Zhao
- Shandong Provincial Eco-Environment Monitoring Center, 3377 Jingshi Dong Lu, Jinan 250100, China
| | - Rutao Liu
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, 72# Jimo Binhai Road, Qingdao 266237, China
| | - Xiangxiang Li
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, 72# Jimo Binhai Road, Qingdao 266237, China
| | - Falin He
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, 72# Jimo Binhai Road, Qingdao 266237, China
| | - Mingyang Jing
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, 72# Jimo Binhai Road, Qingdao 266237, China
| | - Jingqiang Wan
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, 72# Jimo Binhai Road, Qingdao 266237, China
| | - Wansong Zong
- College of Population, Resources and Environment, Shandong Normal University, 88# East Wenhua Road, Jinan 250014, China
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10
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Tanuhadi E, Rompel A. Trisubstituted 4f- and 4d tungstoantimonates as artificial phosphoesterases for nerve agent degradation. Chem Commun (Camb) 2022; 58:7761-7764. [PMID: 35730672 PMCID: PMC9275748 DOI: 10.1039/d2cc02223k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 06/12/2022] [Indexed: 11/21/2022]
Abstract
Three new trisubstituted 4f- and 4d tungstoantimonates (TA) K3Na21[(M(CH3COO))3(HPO3)(WO4)(SbW9O33)3]·nH2O {M3(HPO3)Sb3W28} (M = GdIII, YIII, YbIII, n = 35-36) were synthesized using a double-template synthetic approach. Following their characterization in the solid state employing single- and powder X-ray diffraction (XRD), IR-spectroscopy, and elemental - and thermogravimetric analyses (TGA), {M3(HPO3)Sb3W28} were subjected to a comprehensive set of solution characterization methods including UV/vis- and multinuclear 31P and 13C NMR spectroscopy. All representatives were shown to be highly active, recyclable, and stable Lewis-acid catalysts towards the nerve agent simulant O,O-dimethyl O-(4-nitrophenyl) phosphate (DMNP) at neutral pH (in Tris-HCl [125 mM] at pD 7.0 25 °C). Control experiments showing catalytic activity of the unsubstituted trilacunary TA [SbW9O33]9- suggest the non-innocence of Tris in the DMNP hydrolysis for the first time.
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Affiliation(s)
- Elias Tanuhadi
- Universität Wien, Fakultät für Chemie, Institut für Biophysikalische Chemie, 1090 Wien, Austria.
| | - Annette Rompel
- Universität Wien, Fakultät für Chemie, Institut für Biophysikalische Chemie, 1090 Wien, Austria.
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11
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Van Rompuy LS, Moons J, Aelbers J, Struyf T, Van den Ende W, Parac‐Vogt TN. Selective Hydrolysis of Terminal Glycosidic Bond in α‐1‐Acid Glycoprotein Promoted by Keggin and Wells–Dawson Type Heteropolyacids. Chemistry 2020; 26:16463-16471. [DOI: 10.1002/chem.202003189] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Indexed: 01/18/2023]
Affiliation(s)
| | - Jens Moons
- Department of Chemistry KU Leuven Celestijnenlaan 200F 3001 Leuven Belgium
| | - Jo Aelbers
- Department of Chemistry KU Leuven Celestijnenlaan 200F 3001 Leuven Belgium
| | - Tom Struyf
- Department of Biology Molecular Plant Biology KU Leuven Kasteelpark Arenberg 31 3001 Leuven Belgium
| | - Wim Van den Ende
- Department of Biology Molecular Plant Biology KU Leuven Kasteelpark Arenberg 31 3001 Leuven Belgium
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12
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Quanten T, Savić ND, Parac-Vogt TN. Hydrolysis of Peptide Bonds in Protein Micelles Promoted by a Zirconium(IV)-Substituted Polyoxometalate as an Artificial Protease. Chemistry 2020; 26:11170-11179. [PMID: 32515831 DOI: 10.1002/chem.202001920] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Indexed: 12/22/2022]
Abstract
The development of artificial proteases is challenging, but important for many applications in modern proteomics and biotechnology. The hydrolysis of hydrophobic or unstructured proteins is particularly difficult due to their poor solubility, which often requires the presence of surfactants. Herein, it is shown that a zirconium(IV)-substituted Keggin polyoxometalate (POM), (Et2 NH2 )10 [Zr(α-PW11 O39 )2 ] (1), is able to selectively hydrolyze β-casein, which is an intrinsically unstructured protein at pH 7.4 and 60 °C. Four surfactants (sodium dodecyl sulfate (SDS), N-dodecyl-N,N-dimethyl-3-ammonio-1-propanesulfonate (ZW3-12), 3-[(3-cholamidopropyl)dimethylammonio]-1-propanesulfonate (CHAPS), and polyethylene glycol tert-octylphenyl ether (TX-100)), which differ in the nature of their polar groups, were investigated for their role in influencing the selectivity and efficiency of protein hydrolysis. Under experimental conditions, β-casein forms micellar structures in which the hydrophilic part of the protein is water accessible and able to interact with 1. Identical fragmentation patterns of β-casein in the presence of 1 were observed through SDS poly(acrylamide) gel electrophoresis both in the presence and absence of surfactants, but the rate of hydrolysis varied, depending on the nature of surfactant. Whereas TX-100 surfactant, which has a neutral polar head, caused only a slight decrease in the hydrolysis rate, stronger inhibition was observed in the presence surfactants with charges in their polar heads (CHAPS, ZW3-12, SDS). These results were consistent with those of tryptophan fluorescencequenching studies, which showed that the binding between β-casein and 1 decreased with increasing repulsion between the POM and the polar heads of the surfactants. In all cases, the micellar structure of β-casein was not significantly affected by the presence of POM or surfactants, as indicated by circular dichroism spectroscopy.
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Affiliation(s)
- Thomas Quanten
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Box 2404, 3001, Leuven, Belgium
| | - Nada D Savić
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Box 2404, 3001, Leuven, Belgium
| | - Tatjana N Parac-Vogt
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, Box 2404, 3001, Leuven, Belgium
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13
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Wang Z, Tang SF, Hou X. Glutathione peroxidase 6 from Arabidopsis thaliana as potential biomarker for plants exposure assessment to di-(2-ethylhexyl) phthalate. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 229:117955. [PMID: 31887676 DOI: 10.1016/j.saa.2019.117955] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2019] [Revised: 12/11/2019] [Accepted: 12/12/2019] [Indexed: 06/10/2023]
Abstract
As a most abundant plasticizer, Di-(2-ethylhexyl) phthalate (DEHP) has been widely used in agriculture with an associated potential toxicity to many species including plants via the production of the excessive reactive oxygen species (ROS). However, the potential toxic mechanisms of the plasticizer DEHP-induced oxidative damage to plants remain unknown. The antioxidant enzyme glutathione peroxidase has been suggested as biomarkers to reflect over excessive oxidative stress. In this study, the effect of DEHP on AtGPX6 was evaluated by multi-spectroscopic techniques and molecular docking method. The fluorescence intensity of AtGPX6 was reduced by the static quenching mechanism upon the addition of DEHP. The predominant forces in complex formation was mainly impelled by hydrogen bonding and Van der Waals forces based on the negative ΔH and ΔS, which was in accordance with the molecular docking results. In addition, the secondary structural changes resulted from the complex formation were investigated in presence of different amounts of DEHP by the combination of fluorescence, UV-vis absorption and Circular dichroism spectra, which revealed the loosening and unfolding of the framework of AtGPX6 accompanied with the enhancement of the hydrophilicity around the tryptophan residues. The exploration of the interaction mechanism of DEHP with AtGPX6 at molecular level would help to evaluate the toxicity of the plasticizers and forecast the related adverse effects on plants.
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Affiliation(s)
- Zhong Wang
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Si-Fu Tang
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Xiaomin Hou
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China.
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15
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Xu M, Wan J, Niu Q, Liu R. PFOA and PFOS interact with superoxide dismutase and induce cytotoxicity in mouse primary hepatocytes: A combined cellular and molecular methods. ENVIRONMENTAL RESEARCH 2019; 175:63-70. [PMID: 31103794 DOI: 10.1016/j.envres.2019.05.008] [Citation(s) in RCA: 61] [Impact Index Per Article: 12.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Revised: 04/10/2019] [Accepted: 05/08/2019] [Indexed: 05/08/2023]
Abstract
This study investigated the adverse effects of perfluorooctanoic acid (PFOA) and perfluorooctanesulfonic acid (PFOS) on mouse primary hepatocytes by conducting cell viability, apoptosis, intracellular oxidative stress level, superoxide dismutase (SOD), catalase (CAT) activity and glutathione level assays. It was shown that PFOA and PFOS altered antioxidant enzymes activities and triggered oxidative stress, and thus exhibited cytotoxicity to the hepatocytes. Molecular mechanisms of SOD activities were measured and structural changes were explored by isothermal titration calorimetry and multiple spectroscopy. PFOA and PFOS bind to SOD via electrostatic forces with 7.634 ± 0.06 and 9.7 ± 0.4 sites, respectively, leading to structural and conformational changes. The overall results demonstrated that PFOS and PFOA are able to interact with SOD directly, resulting in producing oxidative stress and induce apoptosis.
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Affiliation(s)
- Mengchen Xu
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, 72# Jimo Binhai Road, Qingdao, Shandong, 266237, PR China
| | - Jingqiang Wan
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, 72# Jimo Binhai Road, Qingdao, Shandong, 266237, PR China
| | - Qigui Niu
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, 72# Jimo Binhai Road, Qingdao, Shandong, 266237, PR China
| | - Rutao Liu
- School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, 72# Jimo Binhai Road, Qingdao, Shandong, 266237, PR China.
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16
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Gao S, Cao Z, Niu Q, Zong W, Liu R. Probing the toxicity of long-chain fluorinated surfactants: Interaction mechanism between perfluorodecanoic acid and lysozyme. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.04.134] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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17
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Hou X, Tan L, Tang SF. Molecular mechanism study on the interactions of cadmium (II) ions with Arabidopsis thaliana glutathione transferase Phi8. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2019; 216:411-417. [PMID: 30925335 DOI: 10.1016/j.saa.2019.03.048] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2018] [Revised: 02/28/2019] [Accepted: 03/17/2019] [Indexed: 06/09/2023]
Abstract
Accumulation of cadmium ions may result in adverse effects on plant due to the oxidative stress via destructions of antioxidants and antioxidant enzymes. As the core component of the glutathione antioxidant system, glutathione S-transferases (GSTs) have been reported as biomarkers for evaluating the metal-induced oxidative damage to plants, but the potential toxicity and underlying toxic molecular mechanisms remain unknown. This article investigated the molecular interactions of cadmium ions with Arabidopsis thaliana glutathione S-transferase phi8 (AtGSTF8) by multi-spectroscopic techniques and enzyme activity measurements. The intrinsic fluorescence of AtGSTF8 was quenched statically upon the addition of cadmium ions accompanied with the complex formation and structural and conformational alterations from multiple spectroscopic measurements, resulting in deconstructed protein skeleton and microenvironmental alterations around the Tyr and Trp residues. A single binding site was predicted for AtGSTF8 towards cadmium ions and the van der Walls interactions and hydrogen bonds are the major driving forces of the interaction. In addition, the transferase activity changes of AtGSTF8 upon the addition of cadmium ions have been observed. The implementation of this work helps to clarify the mechanism of oxidative damage and antioxidant enzymes response induced by heavy metal accumulation in plant at molecular level.
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Affiliation(s)
- Xiaomin Hou
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China.
| | - Lingling Tan
- Shandong Province Key Laboratory of Applied Mycology, College of Life Sciences, Qingdao Agricultural University, Qingdao 266109, China
| | - Si-Fu Tang
- College of Chemistry and Pharmaceutical Sciences, Qingdao Agricultural University, Qingdao 266109, China.
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18
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Zhao L, Zong W, Zhang H, Liu R. Kidney Toxicity and Response of Selenium Containing Protein-glutathione Peroxidase (Gpx3) to CdTe QDs on Different Levels. Toxicol Sci 2018; 168:201-208. [DOI: 10.1093/toxsci/kfy297] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Affiliation(s)
- Lining Zhao
- *School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, Qingdao, Shandong 266237, P. R. China
| | - Wansong Zong
- College of Population, Resources and Environment, Shandong Normal University, Jinan 250014, P. R. China
| | - Hao Zhang
- Laboratory of Immunology for Environment and Health, Shandong Analysis and Test Center, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250014, China
- Hubei Provincial Key Laboratory of Occurrence and Intervention of Rheumatic Diseases, Affiliated Hospital of Hubei University for Nationalities, Enshi 445000, China
| | - Rutao Liu
- *School of Environmental Science and Engineering, Shandong University, China-America CRC for Environment & Health, Shandong Province, Qingdao, Shandong 266237, P. R. China
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19
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Van Rompuy LS, Parac-Vogt TN. Interactions between polyoxometalates and biological systems: from drug design to artificial enzymes. Curr Opin Biotechnol 2018; 58:92-99. [PMID: 30529815 DOI: 10.1016/j.copbio.2018.11.013] [Citation(s) in RCA: 50] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Accepted: 11/20/2018] [Indexed: 12/11/2022]
Abstract
Polyoxometalates have long been studied in a variety of biological applications. Interactions between the highly charged POM molecules and biological molecules frequently occur through hydrogen-bonding and electrostatic interactions. Tellurium-centred Anderson-Evans POMs show exceptional promise as crystallization agents, while acidic and metal-substituted POMs may provide interesting alternatives to enzymes in proteomics applications. While POMs also show interesting results in a number of medicinal applications, for example as anti-amyloid agents for the treatment of Alzheimer's disease and as anti-tumoral agents, their use is often impeded by their toxicity. Many recent studies have therefore focussed on POM-functionalization to reduce toxicity and increase activity by addition of biological targeting molecules.
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Affiliation(s)
- Laura S Van Rompuy
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium
| | - Tatjana N Parac-Vogt
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium.
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20
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Xu L, Tian H, Yao H, Shi T. New kinetic and mechanistic findings in the oxidation of hydroxylamine by Cerium(IV) in perchloric acid media. INT J CHEM KINET 2018. [DOI: 10.1002/kin.21220] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Liyao Xu
- College of Chemistry and Environmental Science; and the MOE Key Laboratory of Medicinal Chemistry and Molecular Diagnostics; Hebei University; Baoding People's Republic of China
| | - Hongwu Tian
- College of Chemistry and Environmental Science; and the MOE Key Laboratory of Medicinal Chemistry and Molecular Diagnostics; Hebei University; Baoding People's Republic of China
| | - Haiping Yao
- College of Chemistry and Environmental Science; and the MOE Key Laboratory of Medicinal Chemistry and Molecular Diagnostics; Hebei University; Baoding People's Republic of China
| | - Tiesheng Shi
- College of Chemistry and Environmental Science; and the MOE Key Laboratory of Medicinal Chemistry and Molecular Diagnostics; Hebei University; Baoding People's Republic of China
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21
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Quanten T, De Mayaer T, Shestakova P, Parac-Vogt TN. Selectivity and Reactivity of Zr IV and Ce IV Substituted Keggin Type Polyoxometalates Toward Cytochrome c in Surfactant Solutions. Front Chem 2018; 6:372. [PMID: 30211153 PMCID: PMC6121075 DOI: 10.3389/fchem.2018.00372] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2018] [Accepted: 08/02/2018] [Indexed: 12/15/2022] Open
Abstract
In this paper we investigate the effect of three different types of surfactants, on the hydrolysis of Cytochrome c (Cyt c), a predominantly α helical protein containing a heme group, promoted by [Ce(α PW11O39)2]10- (CeK) and [Zr(α PW11O39)2]10- (ZrK) polyoxometalates. In the presence of SDS, Zw3 12, or CHAPS surfactants, which are commonly used for solubilizing hydrophobic proteins, the specificity of CeK or ZrK toward hydrolysis of Cyt c does not change. However, the hydrolysis rate of Cyt c by CeK was increased in the presence of SDS, but decreased in the presence of CHAPS, and was nearly inhibited in the presence of Zw3 12. The Circular dichroism and Tryptophan fluorescence spectroscopy have shown that the structural changes in Cyt c caused by surfactants are similar to those caused by POMs, hence the same specificity in the absence or presence of surfactants was observed. The results also indicate that for Cyt c hydrolysis to occur, large unfolding of the protein is needed in order to accommodate the POMs. While SDS readily unfolds Cyt c, the protein remains largely folded in the presence of CHAPS and Zw3 12. Addition of POMs to Cyt c solutions in CHAPS results in unfolding of the structure allowing the interaction with POMs to occur and results in protein hydrolysis. Zw3 12, however, locks Cyt c in a conformation that resists unfolding upon addition of POM, and therefore results in nearly complete inhibition of protein hydrolysis.
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Affiliation(s)
- Thomas Quanten
- Laboratory of Bio-Inorganic Chemistry, Department of Chemistry, KU Leuven, Leuven, Belgium
| | - Tessa De Mayaer
- Laboratory of Bio-Inorganic Chemistry, Department of Chemistry, KU Leuven, Leuven, Belgium
| | - Pavletta Shestakova
- NMR Centre, Institute of Organic Chemistry with Centre of Phytochemistry, Bulgarian Academy of Sciences, Sofia, Bulgaria
| | - Tatjana N Parac-Vogt
- Laboratory of Bio-Inorganic Chemistry, Department of Chemistry, KU Leuven, Leuven, Belgium
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22
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Zhao L, Hu S, Meng Q, Xu M, Zhang H, Liu R. The binding interaction between cadmium-based, aqueous-phase quantum dots with Candida rugosa
lipase. J Mol Recognit 2018; 31:e2712. [DOI: 10.1002/jmr.2712] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2017] [Revised: 01/24/2018] [Accepted: 02/18/2018] [Indexed: 02/05/2023]
Affiliation(s)
- Lining Zhao
- School of Environmental Science and Engineering; Shandong University, China-America CRC for Environment & Health, Shandong Province; Jinan P. R. China
| | - Shimeng Hu
- School of Environmental Science and Engineering; Shandong University, China-America CRC for Environment & Health, Shandong Province; Jinan P. R. China
| | - Qiwei Meng
- School of Environmental Science and Engineering; Shandong University, China-America CRC for Environment & Health, Shandong Province; Jinan P. R. China
| | - Mengchen Xu
- School of Environmental Science and Engineering; Shandong University, China-America CRC for Environment & Health, Shandong Province; Jinan P. R. China
| | - Hao Zhang
- Laboratory of Immunology for Environment and Health, Shandong Analysis and Test Center; Qilu University of Technology (Shandong Academy of Sciences); Jinan China
| | - Rutao Liu
- School of Environmental Science and Engineering; Shandong University, China-America CRC for Environment & Health, Shandong Province; Jinan P. R. China
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23
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Shen S, Chi X, Dong J, Huo S, Tian H, Xu L, Shi T. Oxidation of the drug tiopronin by Cerium(IV) in perchloric acid media: Kinetic and mechanistic analyses. J Mol Liq 2017. [DOI: 10.1016/j.molliq.2017.09.009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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24
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Ly HGT, Parac-Vogt TN. Spectroscopic Study of the Interaction between Horse Heart Myoglobin and Zirconium(IV)-Substituted Polyoxometalates as Artificial Proteases. Chemphyschem 2017; 18:2451-2458. [PMID: 28675658 DOI: 10.1002/cphc.201700680] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Indexed: 01/19/2023]
Abstract
A recent study [Angew. Chem. Int. Ed. 2015, 54, 7391-7394] has shown that horse heart myoglobin (HHM) is selectively hydrolyzed by a range of zirconium(IV)-substituted polyoxometalates (POMs) under mild conditions. In this study, the molecular interactions between the Zr-POM catalysts and HHM are investigated by using a range of complementary techniques, including circular dichroism (CD), UV/Vis spectroscopy, tryptophan fluorescence spectroscopy, and 1 H and 31 P NMR spectroscopy. A tryptophan fluorescence quenching study reveals that, among all examined Zr-POMs, the most reactive POM, 2:2 ZrIV -Keggin, exhibits the strongest interaction with HHM. 31 P NMR spectroscopy studies show that this POM dissociates in solution, resulting in the formation of a monomeric 1:1 ZrIV -Keggin structure, which is likely to be a catalytically active species. In the presence of ZrIV -POMs, HHM does not undergo complete denaturation, as evidenced by CD, UV/Vis, tryptophan fluorescence, and 1 H NMR spectroscopy. CD spectroscopy shows a gradual decrease in the α-helical content of HHM upon addition of ZrIV -POMs. The largest effect is observed in the presence of a large ZrIV -Wells-Dawson structure, whereas small ZrIV -Lindqvist POM has the least influence on the decrease in the α-helical content of HHM. In all cases, the Soret band at λ=409 nm is maintained in the presence of all examined Zr-POMs, which indicates that no conformational changes in the protein occur near the heme group.
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Affiliation(s)
- Hong Giang T Ly
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001, Leuven, Belgium
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25
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Arefian M, Mirzaei M, Eshtiagh-Hosseini H, Frontera A. A survey of the different roles of polyoxometalates in their interaction with amino acids, peptides and proteins. Dalton Trans 2017; 46:6812-6829. [DOI: 10.1039/c7dt00894e] [Citation(s) in RCA: 94] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This perspective provides a comprehensive description of the different roles of POMs in their interaction with relevant biological molecules.
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Affiliation(s)
- Mina Arefian
- Department of Chemistry
- Ferdowsi University of Mashhad
- Mashhad 917751436
- Iran
| | - Masoud Mirzaei
- Department of Chemistry
- Ferdowsi University of Mashhad
- Mashhad 917751436
- Iran
| | | | - Antonio Frontera
- Departament de Química
- Universitat de les Illes Balears
- 07122 Palma de Mallorca
- Spain
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26
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Mondal R, Ghosh N, Mukherjee S. Contrasting effects of pH on the modulation of the structural integrity of hemoglobin induced by sodium deoxycholate. Phys Chem Chem Phys 2016; 18:30867-30876. [PMID: 27801442 DOI: 10.1039/c6cp05216a] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Bile salt-mediated conformational modification of hemoglobin (Hb) was examined at three different pHs i.e., 3.2, 7.4 and 9.0. The added bile salt, sodium deoxycholate (NaDC), decreases the α-helicity in Hb (α-helix: 71.3% → 61.7% in the presence of 9.6 mM NaDC, and 83.2% → 66.2% in the presence of 14 mM NaDC, at pH 7.4 and 9.0, respectively), while a reverse pattern of modification in the Circular Dichroism (CD) spectra of Hb is found at pH 3.2. The acid-induced denatured Hb (pH 3.2) regains its structural integrity by changing conformation from a random coil to an α-helix rich secondary structure upon addition of NaDC (α-helix: 10.4% → 53.4%, β-sheet: 31.0% → 18.5% and random coil: 58.6% → 28.1%, in the presence of 0.65 mM NaDC). Also, a step-wise binding interaction pattern of Hb with NaDC was revealed at pH 7.4 and 9.0 upon variation of steady-state fluorescence intensity and average lifetime of Hb. From the fluorescence lifetime decay pattern, the decrement of energy transfer from Trp to a heme group was found upon the addition of NaDC at pH 7.4 and 9.0. However, at pH 3.2, the modification of the time-resolved fluorescence decay behavior of Hb within NaDC is typically reversed, where the energy transfer from Trp to heme is restored to some extent. Thermodynamic analysis suggests that the Hb-NaDC binding interaction is characterized by a dominant entropic contribution interpreted on the basis of release of ordered water molecules to the bulk aqueous phase.
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Affiliation(s)
- Ramakanta Mondal
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal Bypass Road, Bhopal 426066, Madhya Pradesh, India.
| | - Narayani Ghosh
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal Bypass Road, Bhopal 426066, Madhya Pradesh, India.
| | - Saptarshi Mukherjee
- Department of Chemistry, Indian Institute of Science Education and Research Bhopal, Bhauri, Bhopal Bypass Road, Bhopal 426066, Madhya Pradesh, India.
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27
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Solé-Daura A, Goovaerts V, Stroobants K, Absillis G, Jiménez-Lozano P, Poblet JM, Hirst JD, Parac-Vogt TN, Carbó JJ. Probing Polyoxometalate-Protein Interactions Using Molecular Dynamics Simulations. Chemistry 2016; 22:15280-15289. [DOI: 10.1002/chem.201602263] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2016] [Indexed: 01/18/2023]
Affiliation(s)
- Albert Solé-Daura
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo, 1 43007 Tarragona Spain
| | - Vincent Goovaerts
- Laboratory of Bioinorganic Chemistry; KU Leuven; Celestijnenlaan 200F 3001 Heverlee Belgium
| | - Karen Stroobants
- Laboratory of Bioinorganic Chemistry; KU Leuven; Celestijnenlaan 200F 3001 Heverlee Belgium
| | - Gregory Absillis
- Laboratory of Bioinorganic Chemistry; KU Leuven; Celestijnenlaan 200F 3001 Heverlee Belgium
| | - Pablo Jiménez-Lozano
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo, 1 43007 Tarragona Spain
| | - Josep M. Poblet
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo, 1 43007 Tarragona Spain
| | - Jonathan D. Hirst
- School of Chemistry; University of Nottingham; University Park Nottingham NG7 2RD UK
| | - Tatjana N. Parac-Vogt
- Laboratory of Bioinorganic Chemistry; KU Leuven; Celestijnenlaan 200F 3001 Heverlee Belgium
| | - Jorge J. Carbó
- Departament de Química Física i Inorgànica; Universitat Rovira i Virgili; Marcel⋅lí Domingo, 1 43007 Tarragona Spain
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28
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Xu X, Bošnjaković-Pavlović N, Čolović MB, Krstić DZ, Vasić VM, Gillet JM, Wu P, Wei Y, Spasojević-de Biré A. A combined crystallographic analysis and ab initio calculations to interpret the reactivity of functionalized hexavanadates and their inhibitor potency toward Na(+)/K(+)-ATPase. J Inorg Biochem 2016; 161:27-36. [PMID: 27235271 DOI: 10.1016/j.jinorgbio.2016.04.029] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2015] [Revised: 04/16/2016] [Accepted: 04/25/2016] [Indexed: 02/02/2023]
Abstract
In vitro influence of five synthesized functionalized hexavanadates (V6) on commercial porcine cerebral cortex Na(+)/K(+)-ATPase activity has been studied. Dose dependent Na(+)/K(+)-ATPase inhibition was obtained for all investigated compounds. Calculated half maximal inhibitory concentration IC50 values, in mol/L, for Na(+)/K(+)-ATPase were 7.6×10(-5), 1.8×10(-5), 2.9×10(-5), 5.5×10(-5) for functionalized hexavanadates (V6) with tetrabutylammonium (TBA) [V6-CH3][TBA]2, [V6-NO2][TBA]2, [V6-OH][TBA]2 and [V6-C3][TBA]2 respectively. [V6-OH][Na]2 inhibited Na(+)/K(+)-ATPase activity up to 30% at maximal investigated concentration 1×10(-3)mol/L. This reactivity has been interpreted using a study of the non-covalent interactions of functionalized hexavanadate hybrids through Cambridge Structural Database (CSD) analysis. Bibliographic searching has led to 18 different structures and 99 contacts. We have observed that C-H⋯O contacts consolidate the structures. We have also performed density functional theory (DFT) calculations and have determined electrostatic potential values at the molecular surface on a series of functionalized V6. These results enlightened their chemical reactivity and their potential biological applications such as the inhibition of the ATPase.
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Affiliation(s)
- Xiao Xu
- Université Paris Saclay, CentraleSupélec, Campus de Châtenay, Grande Voie des Vignes, 92295 Châtenay-Malabry, France; CNRS, UMR 8580, Laboratory "Structures Propriétés et Modélisation des Solides" (SPMS), Grande Voie des Vignes, 92295 Châtenay-Malabry, France
| | | | - Mirjana B Čolović
- Department of Physical Chemistry, Vinča Institute of Nuclear Sciences, University of Belgrade, P.O.Box 522, Belgrade, Serbia
| | - Danijela Z Krstić
- University School of Medicine, Institute of Medical Chemistry, University of Belgrade, Višegradska 26, 11000 Belgrade, Serbia
| | - Vesna M Vasić
- Department of Physical Chemistry, Vinča Institute of Nuclear Sciences, University of Belgrade, P.O.Box 522, Belgrade, Serbia
| | - Jean-Michel Gillet
- Université Paris Saclay, CentraleSupélec, Campus de Châtenay, Grande Voie des Vignes, 92295 Châtenay-Malabry, France; CNRS, UMR 8580, Laboratory "Structures Propriétés et Modélisation des Solides" (SPMS), Grande Voie des Vignes, 92295 Châtenay-Malabry, France
| | - Pingfan Wu
- Institute of POM-based Materials, The Synergistic Innovation Center of Catalysis Materials of Hubei Province, Hubei University of Technology, 430086 Wuhan, Hubei Province, P. R. China
| | - Yongge Wei
- Department of Chemistry, Tsinghua University, 100084 Beijing, P.R. China
| | - Anne Spasojević-de Biré
- Université Paris Saclay, CentraleSupélec, Campus de Châtenay, Grande Voie des Vignes, 92295 Châtenay-Malabry, France; CNRS, UMR 8580, Laboratory "Structures Propriétés et Modélisation des Solides" (SPMS), Grande Voie des Vignes, 92295 Châtenay-Malabry, France
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29
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Wang J, Yang X, Wang J, Xu C, Zhang W, Liu R, Zong W. Probing the binding interaction between cadmium(ii) chloride and lysozyme. NEW J CHEM 2016. [DOI: 10.1039/c5nj02911b] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
Key binding sites influencing lysozyme activity when interacting with CdCl2.
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Affiliation(s)
- Jing Wang
- School of Environmental Science and Engineering
- Shandong University
- China–America CRC for Environment & Health
- Jinan 250100
- P. R. China
| | - Xinping Yang
- School of Environmental Science and Engineering
- Shandong University
- China–America CRC for Environment & Health
- Jinan 250100
- P. R. China
| | - Jinhu Wang
- School of Environmental Science and Engineering
- Shandong University
- China–America CRC for Environment & Health
- Jinan 250100
- P. R. China
| | - Chi Xu
- School of Environmental Science and Engineering
- Shandong University
- China–America CRC for Environment & Health
- Jinan 250100
- P. R. China
| | - Wandi Zhang
- School of Environmental Science and Engineering
- Shandong University
- China–America CRC for Environment & Health
- Jinan 250100
- P. R. China
| | - Rutao Liu
- School of Environmental Science and Engineering
- Shandong University
- China–America CRC for Environment & Health
- Jinan 250100
- P. R. China
| | - Wansong Zong
- College of Population, Resources and Environment
- Shandong Normal University
- Jinan 250014
- P. R. China
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30
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Understanding the Regioselective Hydrolysis of Human Serum Albumin by Zr(IV)-Substituted Polyoxotungstates Using Tryptophan Fluorescence Spectroscopy. INORGANICS 2015. [DOI: 10.3390/inorganics3020230] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
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31
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Goovaerts V, Stroobants K, Absillis G, Parac-Vogt TN. Eu(III) luminescence and tryptophan fluorescence spectroscopy as a tool for understanding interactions between hen egg white lysozyme and metal-substituted Keggin type polyoxometalates. J Inorg Biochem 2015; 150:72-80. [PMID: 25870147 DOI: 10.1016/j.jinorgbio.2015.03.015] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2014] [Revised: 03/17/2015] [Accepted: 03/26/2015] [Indexed: 01/11/2023]
Abstract
The interaction between the lacunary Keggin K7PW11O39, the Eu(III)-substituted Keggin K4EuPW11O39 (Eu-Keggin) and the Ce(IV)-substituted Keggin [Me2NH2]10[Ce(PW11O39)2] (Ce-Keggin) polyoxometalates (POMs), and the proteins hen egg white lysozyme (HEWL) and the structurally homologous α-lactalbumin (α-LA) was studied by steady state and time-resolved Eu(III) luminescence and tryptophan (Trp) fluorescence spectroscopy. The excitation spectrum of Eu-Keggin at lower concentrations ([Eu-Keggin]<100 μM) is dominated by a ligand-to-metal charge transfer band (291 nm). For higher concentrations ([Eu-Keggin]>250 μM) the (5)L6←(7)F0 transition becomes the most intense peak. In the absence of protein, the number of coordinated water molecules to the Eu(III) centre of Eu-Keggin is 4, indicating a 1:1 Eu(III):POM species. In the presence of phosphate buffer this number linearly decreases from 4 to 2 upon increasing phosphate buffer concentration. Upon addition of HEWL, there are no coordinated water molecules, suggesting interaction between Eu-Keggin and the protein surface. In addition, this interaction results in a more than threefold increase of the hypersensitive (5)D0→(7)F2 transition for the Eu-Keggin/HEWL mixture. The calculated association constant amounted to 2.2×10(2) M(-1) for the Eu-Keggin/HEWL complex. Tryptophan fluorescence quenching studies were performed and the quenching constants were calculated to be 9.1×10(4) M(-1), 4×10(4) M(-1) and 4.1×10(5) M(-1) for the lacunary Keggin/HEWL, the Eu-Keggin/HEWL and the Ce-Keggin/HEWL complexes, respectively. The number of bound POM molecules to HEWL was 1.04 for the lacunary Keggin POM, and 1.0 for Eu-Keggin, indicating the formation of a 1:1 POM/HEWL complex. The value of 1.38 for Ce-Keggin might indicate a transition from 1:1 to 1:2 interaction.
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Affiliation(s)
- Vincent Goovaerts
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Karen Stroobants
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
| | - Gregory Absillis
- Department of Chemistry, KU Leuven, Celestijnenlaan 200F, 3001 Leuven, Belgium
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