1
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Materials, workflows and applications of IMAC for phosphoproteome profiling in the recent decade: A review. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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2
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Jiang D, Qi R, Lyu S, Wang W, Liu J, Jia Q. Preparation of Cerium Dioxide Functionalized Magnetic Layered Double Hydroxides for High-efficiency Phosphopeptide Enrichment. Chem Res Chin Univ 2022. [DOI: 10.1007/s40242-022-2165-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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3
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Jiang D, Lv S, Qi R, Liu J, Duan L. Design of two-dimensional molybdenum trioxide-immobilized magnetic graphite nitride nanocomposites with multiple affinity sites for phosphopeptide enrichment. J Chromatogr A 2022; 1678:463374. [DOI: 10.1016/j.chroma.2022.463374] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 07/22/2022] [Accepted: 07/24/2022] [Indexed: 11/30/2022]
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4
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Layer-by-layer assembly of multilayered double hydroxides/polyoxometalate-coated magnetic nanoparticles for highly efficient phosphopeptide enrichment. Mikrochim Acta 2022; 189:156. [PMID: 35347436 DOI: 10.1007/s00604-022-05258-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 03/03/2022] [Indexed: 01/07/2023]
Abstract
A layer-by-layer (LbL) assembly strategy was developed to prepare multilayered double hydroxide/polyoxometalate shell-coated magnetic nanoparticles. The introduction of functional shells not only offered abundant affinity sites of metal oxide and metal ions but also increased the surface area for the contact with targets. By combining the enrichment strategies of immobilized metal ion affinity chromatography and metal oxide affinity chromatography, the nanomaterial can capture phosphopeptides via a synergistic effect. The method presented a low detection limit of 0.1 fmol in combination with matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) analysis. The nanomaterial showed satisfactory selectivity (1:1:5000 M ratio of α-/β-casein/bovine serum albumin), good recovery (92.07%), high adsorption capacity (117.6 mg g-1), and ten times reusability for capturing phosphopeptides.
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5
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He Y, Zhang S, Zhong C, Yang Y, Li G, Ji Y, Lin Z. Facile synthesis of Ti 4+-immobilized magnetic covalent organic frameworks for enhanced phosphopeptide enrichment. Talanta 2021; 235:122789. [PMID: 34517647 DOI: 10.1016/j.talanta.2021.122789] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2021] [Revised: 07/31/2021] [Accepted: 08/04/2021] [Indexed: 10/20/2022]
Abstract
In this work, core-shell structured Ti4+-immobilized magnetic covalent organic frameworks (denoted as Fe3O4@TAPTDHTA-Ti4+ composites) were prepared for enhanced phosphopeptide enrichment by one-pot synthesis of COFs shell with inherent bifunctional groups on Fe3O4 NPs and further Ti4+ immobilization. The widely distributed bifunctional groups could provide abundant chelating sites for Ti4+ immobilizing. Combining with the high specific surface area and mesoporous structure, the Fe3O4@TAPTDHTA-Ti4+ composites exhibited excellent enrichment efficiency for phosphopeptides, such as low detection limit (0.05 fmol μL-1), high selectivity (1:5000 of molar ratio of β-casein/bovine serum albumin (BSA) tryptic digests), high adsorption capacity (62.9 μg mg-1) and strong size-exclusive effect (1:250:250 of molar ratio of β-casein tryptic digest/β-casein/BSA). In addition, this method was general for immobilizing other metal ions (Zr4+ and Fe3+). Notably, the Fe3O4@TAPTDHTA-Fe3+ composites exhibited controllable affinity towards mono-phosphopeptides and multi-phosphopeptides. Furthermore, the Fe3O4@TAPTDHTA-Ti4+ composites were successfully applied to selectively capture phosphopeptides from complex biological samples including the tryptic digest of nonfat milk, human serum and human saliva. More significantly, 3333 phosphopeptides derived from 1409 phosphoproteins with 3492 phosphorylation sites were clearly identified from the tryptic digest of HeLa cell lysate. In addition to providing a potential excellent enrichment probe for comprehensive phosphoproteomic analysis, this study also offers a new perspective for the functionalization of COFs.
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Affiliation(s)
- Yanting He
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Shasha Zhang
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Chao Zhong
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Yixin Yang
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Guorong Li
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Yin Ji
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China
| | - Zian Lin
- Ministry of Education Key Laboratory of Analytical Science for Food Safety and Biology, Fujian Provincial Key Laboratory of Analysis and Detection Technology for Food Safety, College of Chemistry, Fuzhou University, Fuzhou, Fujian, 350108, China.
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6
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Design and application of hydrophilic bimetallic metal-organic framework magnetic nanoparticles for rapid capture of exosomes. Anal Chim Acta 2021; 1186:339099. [PMID: 34756265 DOI: 10.1016/j.aca.2021.339099] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2021] [Revised: 09/17/2021] [Accepted: 09/21/2021] [Indexed: 02/08/2023]
Abstract
Functional materials with good biocompatibility have been widely used in the study of genomics, proteomics and disease diagnosis, which has improved the progress of life science. In this paper, the material not only exhibited a strong affinity to the phosphate groups on the exosomal membrane due to the coexistence of Zr-O clusters and Ti4+, but also owned great hydrophilicity to reduce non-specific adsorption of contaminated proteins, achieving the separation and purification of exosomes from complex biosamples. The model exosomes extracted by ultracentrifugation (UC) were used to evaluate the feasibility of Fe3O4@UiO-66-NH2@PA-Ti4+ capturing exosomes. The process of Fe3O4@UiO-66-NH2@PA-Ti4+ capturing exosomes was simple to operate with a high recovery rate (97.3%) within a short time (5 min). Then Fe3O4@UiO-66-NH2@PA-Ti4+ was further applied to capture exosomes in media and urine followed by the downstream proteomics analysis. 348 and 284 exosomal proteins were identified for cell medium and urine, respectively. This work shows great potential of the material for subsequent function research of disease-related exosomes by separating exosomes rapidly and efficiently.
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7
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Jiao F, Gao F, Liu Y, Fan Z, Xiang X, Xia C, Lv Y, Xie Y, Bai H, Zhang W, Qin W, Qian X. A facile "one-material" strategy for tandem enrichment of small extracellular vesicles phosphoproteome. Talanta 2021; 223:121776. [PMID: 33298282 DOI: 10.1016/j.talanta.2020.121776] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 10/09/2020] [Accepted: 10/12/2020] [Indexed: 01/08/2023]
Abstract
Small extracellular vesicles (SEVs), are cell-derived, membrane-enclosed nanometer-sized vesicles that play vital roles in many biological processes. Recent years, more and more evidences proved that small EVs have close relationship with many diseases such as cancers and Alzheimer's disease. The use of phosphoproteins in SEVs as potential biomarkers is a promising new choice for early diagnosis and prognosis of cancer. However, current techniques for SEVs isolation still facing many challenges, such as highly instrument dependent, time consuming and insufficient purity. Furthermore, complex enrichment procedures and low microgram amounts of proteins available from clinical sources largely limit the throughput and the coveage depth of SEVs phosphoproteome mapping. Here, we synthesized Ti4+-modified magnetic graphene-oxide composites (GFST) and developed a "one-material" strategy for facile and efficient phosphoproteome enrichment and identification in SEVs from human serum. By taking advantage of chelation and electrostatic interactions between metal ions and phosphate groups, GFST shows excellent performance in both SEVs isolation and phosphopeptide enrichment. Close to 85% recovery is achieved within a few minutes by simple incubation with GFST and magnetic separation. Proteome profiling of the isolated serum SEVs without phosphopeptide enrichment results in 515 proteins, which is approximately one-fold more than those otained by ultracentrifugation or coprecipitation kits. Further application of GFST in one-material-based enrichment led to identification of 859 phosphosites in 530 phosphoproteins. Kinase-substrate correlation analysis reveals enriched substrates of CAMK in serum SEVs phosphoproteome. Therefore, we expect that the low instrument dependency and the limited sample requirement of this new strategy may facilitate clinical investigations in SEV-based transportation of abnormal kinases and substrates for drug target discovery and cancer monitoring.
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Affiliation(s)
- Fenglong Jiao
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Fangyuan Gao
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Yuanyuan Liu
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Zhiya Fan
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Xiaochao Xiang
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Chaoshuang Xia
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Yayao Lv
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Yuping Xie
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Haihong Bai
- Phase I Clinical Trial Center, Capital Medical University Affiliated Beijing Shijitan Hospital University, Beijing, 100038, China
| | - Wanjun Zhang
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
| | - Weijie Qin
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China; College of Basic Medicine, Anhui Medical University, Hefei, 230032, China.
| | - Xiaohong Qian
- National Center for Protein Sciences Beijing, State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Lifeomics, Beijing, 102206, China
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8
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Glycocyamine functionalized magnetic layered double hydroxides with multiple affinity sites for trace phosphopeptides enrichment. Anal Chim Acta 2020; 1136:25-33. [DOI: 10.1016/j.aca.2020.07.057] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 07/21/2020] [Accepted: 07/23/2020] [Indexed: 01/13/2023]
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9
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Specific enrichment of phosphopeptides by using magnetic nanocomposites of type Fe3O4@graphene oxide and Fe3O4@C coated with self-assembled oligopeptides. Mikrochim Acta 2020; 187:144. [DOI: 10.1007/s00604-019-4096-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 12/26/2019] [Indexed: 12/13/2022]
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10
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Ding F, Zhao Y, Liu H, Zhang W. Core–shell magnetic microporous covalent organic framework with functionalized Ti(iv) for selective enrichment of phosphopeptides. Analyst 2020; 145:4341-4351. [DOI: 10.1039/d0an00038h] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
We fabricated a core-shell magnetic Ti4+-functionalized covalent organic framework composite to selectively capture phosphopeptides in biosamples. This method is applicable to achieve rapid, selective and efficient phosphopeptide analysis.
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Affiliation(s)
- Fengjuan Ding
- Shanghai Key Laboratory of Functional Materials Chemistry
- School of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai 200237
- People’ s Republic of China
| | - Yameng Zhao
- Shanghai Key Laboratory of Functional Materials Chemistry
- School of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai 200237
- People’ s Republic of China
| | - Haiyan Liu
- Shanghai Key Laboratory of Functional Materials Chemistry
- School of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai 200237
- People’ s Republic of China
| | - Weibing Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry
- School of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai 200237
- People’ s Republic of China
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11
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Huang YL, Wang J, Jiang YH, Yang PY, Wang GW, Liu F. Development of amphiphile 4-armed PEO-based Ti4+ complex for highly selective enrichment of phosphopeptides. Talanta 2019; 204:670-676. [DOI: 10.1016/j.talanta.2019.06.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2019] [Revised: 05/24/2019] [Accepted: 06/03/2019] [Indexed: 12/15/2022]
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12
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Jiang D, Li Z, Jia Q. A sensitive and selective phosphopeptide enrichment strategy by combining polyoxometalates and cysteamine hydrochloride-modified chitosan through layer-by-layer assembly. Anal Chim Acta 2019; 1066:58-68. [DOI: 10.1016/j.aca.2019.04.001] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2018] [Revised: 03/30/2019] [Accepted: 04/01/2019] [Indexed: 02/04/2023]
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13
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Lin H, Chen H, Shao X, Deng C. A capillary column packed with a zirconium(IV)-based organic framework for enrichment of endogenous phosphopeptides. Mikrochim Acta 2018; 185:562. [PMID: 30488348 DOI: 10.1007/s00604-018-3109-7] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2018] [Accepted: 11/21/2018] [Indexed: 01/04/2023]
Abstract
A zirconium(IV)-based metal organic framework (Zr-MOF) was deposited on polydopamine-coated silica microspheres to form microspheres of type SiO2@PDA@Zr-MOF. These were packed into capillary columns for enrichment of phosphopeptides. The column was off-line coupled to both matrix-assisted laser desorption/ionization time of flight mass spectrometry and LC-ESI-MS/MS. The method has a detection limit as low as 4 fmol of β-casein digest and a selectivity as high as 1:1000 (molar ratio of β-casein and BSA digest). It was applied to the analysis of human saliva. In total, 240 endogenous phosphopeptides were identified in only 25 μL human saliva. Graphical abstract A zirconium-based metal organic framework (Zr-MOF) was modified outside of polydopamine-coated silica microspheres to form microspheres named SiO2@PDA@Zr-MOF. Then they were packed in capillary columns for selective enrichment of phosphopeptides via interaction between Zr-O clusters and phosphate groups. The pre-concentration resulted in a better detection of phosphopeptides by mass spectrometry. Tris: Tris(hydroxymethyl)aminomethane; DMF: Dimethyl Formamide; Zr-MOF: Zirconium(IV)-organic framework; MOAC: Metal oxide affinity chromatography.
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Affiliation(s)
- Haizhu Lin
- The Fifth People's Hospital of Shanghai, Fudan University, Shanghai, 200240, China.,Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.,Department of Chemistry, and Collaborative Innovation Center of Genetics and Development, Fudan University, Shanghai, 200433, China
| | - Hemei Chen
- The Fifth People's Hospital of Shanghai, Fudan University, Shanghai, 200240, China.,Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.,Department of Chemistry, and Collaborative Innovation Center of Genetics and Development, Fudan University, Shanghai, 200433, China
| | - Xi Shao
- The Fifth People's Hospital of Shanghai, Fudan University, Shanghai, 200240, China.,Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.,Department of Chemistry, and Collaborative Innovation Center of Genetics and Development, Fudan University, Shanghai, 200433, China
| | - Chunhui Deng
- The Fifth People's Hospital of Shanghai, Fudan University, Shanghai, 200240, China. .,Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China. .,Department of Chemistry, and Collaborative Innovation Center of Genetics and Development, Fudan University, Shanghai, 200433, China.
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14
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Recent advances in covalent organic frameworks for separation and analysis of complex samples. Trends Analyt Chem 2018. [DOI: 10.1016/j.trac.2018.07.013] [Citation(s) in RCA: 54] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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15
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Zhang H, Li X, Yao Y, Ma S, Liu Z, Ou J, Wei Y, Ye M. Sol-gel preparation of titanium (IV)-immobilized hierarchically porous organosilica hybrid monoliths. Anal Chim Acta 2018; 1046:199-207. [PMID: 30482300 DOI: 10.1016/j.aca.2018.09.066] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Revised: 09/26/2018] [Accepted: 09/26/2018] [Indexed: 11/17/2022]
Abstract
Hierarchically porous monoliths as a key feature of biological materials have been applied in enrichment and separation. In this work, a metal immobilized hierarchically porous organosilica hybrid monolith was synthesized by hydrolysis and condensation of tetraethoxysilane (TEOS) and diethoxyphosphorylethyl-triethoxysilane (DPTS) under alkaline environment. Phosphonate ester groups were firstly introduced by the employment of DPTS as functional monomer, and then acidified to phosphonic acids. The surface area of optimal monolith could reach to 1170 m2/g, which simultaneously contained micropores and mesopores (4 nm) obtained from nitrogen sorption measurement. Meanwhile, mercury intrusion porosimetry (MIP) further demonstrated that macropores (1-3 μm) existed in monoliths. Followed by chelating with titanium ion (Ti4+), the hierarchically porous organosilica hybrid monoliths could be applied as IMAC materials. This synthesized process was easy-operating and time-saving, and avoided the tedious and complex process of traditional Ti4+-IMAC materials. Furthermore, the Ti4+-IMAC monoliths exhibited high adsorption capacity for pyridoxal 5'-phosphate (82.6 mg/g). The 3282 unique phosphopeptides could be identified from 100 μg of HeLa digests after enrichment with the monolith, exhibiting excellent enrichment performance of low-abundance phosphopeptides.
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Affiliation(s)
- Haiyang Zhang
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China; Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xiaowei Li
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yating Yao
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Shujuan Ma
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China; Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Zhen Liu
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Junjie Ou
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China.
| | - Yinmao Wei
- Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, 710069, China.
| | - Mingliang Ye
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian, 116023, China
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Hong Y, Zhan Q, Pu C, Sheng Q, Zhao H, Lan M. Highly efficient enrichment of phosphopeptides from HeLa cells using hollow magnetic macro/mesoporous TiO2 nanoparticles. Talanta 2018; 187:223-230. [DOI: 10.1016/j.talanta.2018.05.031] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2017] [Revised: 03/12/2018] [Accepted: 05/08/2018] [Indexed: 02/02/2023]
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17
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Hong Y, Yao Y, Zhao H, Sheng Q, Ye M, Yu C, Lan M. Dendritic Mesoporous Silica Nanoparticles with Abundant Ti 4+ for Phosphopeptide Enrichment from Cancer Cells with 96% Specificity. Anal Chem 2018; 90:7617-7625. [PMID: 29799184 DOI: 10.1021/acs.analchem.8b01369] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Selective enrichment and sensitive detection of phosphopeptides are of great significance in many bioapplications. In this work, dendritic mesoporous silica nanoparticles modified with polydopamine and chelated Ti4+ (denoted DMSNs@PDA-Ti4+) were developed to improve the enrichment selectivity of phosphopeptides. The unique central-radial pore structures endowed DMSNs@PDA-Ti4+ with a high surface area (362 m2 g-1), a large pore volume (1.37 cm3 g-1), and a high amount of chelated Ti4+ (75 μg mg-1). Compared with conventional mesoporous silica-based materials with the same functionalization (denoted mSiO2@PDA-Ti4+) and commercial TiO2, DMSNs@PDA-Ti4+ showed better selectivity and a lower detection limit (0.2 fmol/μL). Moreover, 2422 unique phosphopeptides were identified from HeLa cell extracts with a high specificity (>95%) enabled by DMSNs@PDA-Ti4+, better than those in previous reports.
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Affiliation(s)
- Yayun Hong
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering , East China University of Science and Technology , Shanghai 200237 , People's Republic of China
| | - Yating Yao
- Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics , Chinese Academy of Sciences (CAS) , Dalian , China
| | - Hongli Zhao
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering , East China University of Science and Technology , Shanghai 200237 , People's Republic of China
| | - Qianying Sheng
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering , East China University of Science and Technology , Shanghai 200237 , People's Republic of China
| | - Mingliang Ye
- Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics , Chinese Academy of Sciences (CAS) , Dalian , China
| | - Chengzhong Yu
- Australian Institute for Bioengineering and Nanotechnology , The University of Queensland , Brisbane , Queensland 4072 , Australia
| | - Minbo Lan
- Shanghai Key Laboratory of Functional Materials Chemistry, School of Chemistry and Molecular Engineering , East China University of Science and Technology , Shanghai 200237 , People's Republic of China
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18
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Tan S, Wang J, Han Q, Liang Q, Ding M. A porous graphene sorbent coated with titanium(IV)-functionalized polydopamine for selective lab-in-syringe extraction of phosphoproteins and phosphopeptides. Mikrochim Acta 2018; 185:316. [PMID: 29876662 DOI: 10.1007/s00604-018-2846-y] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2018] [Accepted: 05/22/2018] [Indexed: 11/26/2022]
Abstract
A novel polydopamine coated three-dimensional porous graphene aerogel sorbent carrying immobilized titanium(IV) ions (denoted as Ti4+@PDA@GA) was fabricated without using an organic solvent. The material is shown to be a viable carbon foam type of monolithic sorbent for selective lab-in-syringe enrichment of phosphoproteins and phosphopeptides. The phosphoproteins can be separated from a sample by aspiration and then bind to the sorbent. The analytes then can be dispensed within 5 min. The weight percent of titanium in the monolith typically is 14%, and the absorption capacities for the model proteins β-casein and κ-casein are 1300 and 1345 mg g-1, respectively. The absorption capacities for nonphosphoproteins are much smaller, typically 160 mg g-1 for β-lactoglobulin, 125 mg g-1 for bovine serum, and 4.8 mg g-1 for lysozyme. The results demonstrate that the selectivity for phosphoproteins was excellent on multiple biological samples including standard protein mixtures, spiked human blood serum, and drinking milk. The selective enrichment of phosphopeptides also makes the method a promising tool in phosphoproteomics. Graphical abstract Schematic of a polydopamine coated three-dimensional porous graphene aerogel for immobilization of titanium(IV) ions. The material served as a monolithic sorbent for selective enrichment of phosphopeptides and phosphoproteins from biological samples. The enrichment process can be carried out conveniently using a lab-in-syringe way.
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Affiliation(s)
- Siyuan Tan
- MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology;Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Jundong Wang
- MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology;Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Qiang Han
- MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology;Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Qionglin Liang
- MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology;Department of Chemistry, Tsinghua University, Beijing, 100084, China.
| | - Mingyu Ding
- MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology;Department of Chemistry, Tsinghua University, Beijing, 100084, China.
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19
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Núñez C, Chantada-Vázquez MDP, Bravo SB, Vázquez-Estévez S. Novel functionalized nanomaterials for the effective enrichment of proteins and peptides with post-translational modifications. J Proteomics 2018; 181:170-189. [DOI: 10.1016/j.jprot.2018.04.017] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Revised: 04/02/2018] [Accepted: 04/09/2018] [Indexed: 02/07/2023]
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20
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Zhang Q, Huang Y, Jiang B, Hu Y, Xie J, Gao X, Jia B, Shen H, Zhang W, Yang P. In Situ Synthesis of Magnetic Mesoporous Phenolic Resin for the Selective Enrichment of Glycopeptides. Anal Chem 2018; 90:7357-7363. [PMID: 29851350 DOI: 10.1021/acs.analchem.8b00708] [Citation(s) in RCA: 47] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Quanqing Zhang
- Department of Chemistry and the State Key Laboratory of Molecular Engineering, Fudan University, Shanghai 200433, People’s Republic of China
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Yuanyu Huang
- Department of Chemistry and the State Key Laboratory of Molecular Engineering, Fudan University, Shanghai 200433, People’s Republic of China
| | - Biyun Jiang
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Yajun Hu
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Juanjuan Xie
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Xing Gao
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Bin Jia
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Huali Shen
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Weijia Zhang
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
| | - Pengyuan Yang
- The Fifth People’s Hospital of Shanghai and Institutes of Biomedical Sciences, Fudan University, Shanghai 200032, People’s Republic of China
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21
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Luo B, Zhou X, Jiang P, Yi Q, Lan F, Wu Y. PAMA–Arg brush-functionalized magnetic composite nanospheres for highly effective enrichment of phosphorylated biomolecules. J Mater Chem B 2018; 6:3969-3978. [DOI: 10.1039/c8tb00705e] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
A novel polymer brush-functionalized magnetic composite nanosphere was successfully prepared, exhibiting large enrichment capacity, extremely high detection sensitivity, and high enrichment recovery in phosphorylated biomolecule enrichment.
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Affiliation(s)
- Bin Luo
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Xiaoxi Zhou
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Peipei Jiang
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Qiangying Yi
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Fang Lan
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- P. R. China
| | - Yao Wu
- National Engineering Research Center for Biomaterials
- Sichuan University
- Chengdu 610064
- P. R. China
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22
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Sun H, Zhang Q, Zhang L, Zhang W, Zhang L. Facile preparation of molybdenum (VI) oxide – Modified graphene oxide nanocomposite for specific enrichment of phosphopeptides. J Chromatogr A 2017; 1521:36-43. [DOI: 10.1016/j.chroma.2017.08.029] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Revised: 07/21/2017] [Accepted: 08/08/2017] [Indexed: 10/19/2022]
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23
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Highly selective enrichment of phosphorylated proteins by using Spore@Fe 3+ microspheres. Anal Chim Acta 2017; 986:161-170. [DOI: 10.1016/j.aca.2017.07.030] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2017] [Revised: 07/10/2017] [Accepted: 07/12/2017] [Indexed: 11/21/2022]
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24
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Bastos P, Trindade F, Ferreira R, Leite-Moreira A, Falcão-Pires I, Manadas B, Daniel-da-Silva AL, Vitorino R. EDTA-functionalized magnetic nanoparticles: A suitable platform for the analysis of low abundance urinary proteins. Talanta 2017; 170:81-88. [PMID: 28501217 DOI: 10.1016/j.talanta.2017.03.087] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Revised: 03/24/2017] [Accepted: 03/28/2017] [Indexed: 12/24/2022]
Abstract
Urine is a highly attractive source of biological information and disease biomarkers, whose proteome characterization is ongoing. To that end, depletion/enrichment strategies for protein analysis can be of great convenience. We have thus developed a method based on the use of EDTA-functionalized magnetic nanoparticles (NPs@EDTA), to fractionate urine samples before liquid chromatography-mass spectrometry analysis and compared the identified proteins with those obtained from ultrafiltrated/unfractionated (UF) urine samples. NPs@EDTA allowed larger urine volumes to be processed, resulting in a greater number of protein identifications (~2-fold) at a lower cost when compared to UF samples. Proteins of greater abundance (such as albumin and uromodulin) were, at least partially, depleted with NPs@EDTA while those of lower abundance were enriched. Bioinformatics analysis showed that approximately 27% of NPs@EDTA-enriched proteins were annotated as displaying enzymatic activity, most of these being hydrolytic enzymes (56%), particularly proteases/peptidases (48%). Also, post-translational modifications were prominently predicted across NPs@EDTA-enriched proteins (90%), particularly glycosylation (52%), phosphorylation (47%) and acetylation (30%). NPs@EDTA allowed the identification of 109 proteins in urine for the first time, showing high potential as a platform for urine's fractionation prior to proteomic analysis.
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Affiliation(s)
- Paulo Bastos
- iBiMED - Institute of Biomedicine, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal
| | - Fábio Trindade
- iBiMED - Institute of Biomedicine, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal; Unidade de Investigação Cardiovascular, Departamento de Cirurgia e Fisiologia, Faculdade de Medicina, Universidade do Porto, Portugal.
| | - Rita Ferreira
- QOPNA, Mass Spectrometry Center, Department of Chemistry, University of Aveiro, Portugal
| | - Adelino Leite-Moreira
- Unidade de Investigação Cardiovascular, Departamento de Cirurgia e Fisiologia, Faculdade de Medicina, Universidade do Porto, Portugal
| | - Inês Falcão-Pires
- Unidade de Investigação Cardiovascular, Departamento de Cirurgia e Fisiologia, Faculdade de Medicina, Universidade do Porto, Portugal
| | - Bruno Manadas
- CNC - Center for Neuroscience and Cell Biology, University of Coimbra, Coimbra, Portugal
| | - Ana L Daniel-da-Silva
- Department of Chemistry, CICECO Aveiro Institute of Materials, University of Aveiro, Portugal
| | - Rui Vitorino
- iBiMED - Institute of Biomedicine, Department of Medical Sciences, University of Aveiro, Aveiro, Portugal; Unidade de Investigação Cardiovascular, Departamento de Cirurgia e Fisiologia, Faculdade de Medicina, Universidade do Porto, Portugal
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25
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Lv N, Zhang J, Li G, Wang X, Ni J. Pyrophosphate-Imprinted Magnetic Mesoporous Silica Microspheres for Recognition, Enrichment and MS Detection of Phosphopeptides. ChemistrySelect 2017. [DOI: 10.1002/slct.201700035] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Nan Lv
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry; Changchun 130022 P. R. China
- University of Chinese Academy of Sciences; Beijing 100049 P. R. China
| | - Jilin Zhang
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry; Changchun 130022 P. R. China
| | - Guangming Li
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry; Changchun 130022 P. R. China
- University of Chinese Academy of Sciences; Beijing 100049 P. R. China
| | - Xun Wang
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry; Changchun 130022 P. R. China
- University of Chinese Academy of Sciences; Beijing 100049 P. R. China
| | - Jiazuan Ni
- State Key Laboratory of Rare Earth Resource Utilization; Changchun Institute of Applied Chemistry; Changchun 130022 P. R. China
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26
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Li D, Yin D, Chen Y, Liu Z. Coupling of metal-organic frameworks-containing monolithic capillary-based selective enrichment with matrix-assisted laser desorption ionization-time-of-flight mass spectrometry for efficient analysis of protein phosphorylation. J Chromatogr A 2017; 1498:56-63. [DOI: 10.1016/j.chroma.2016.10.054] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2016] [Revised: 09/29/2016] [Accepted: 10/24/2016] [Indexed: 12/19/2022]
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27
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Titanium (IV) ion-modified covalent organic frameworks for specific enrichment of phosphopeptides. Talanta 2017; 166:133-140. [DOI: 10.1016/j.talanta.2017.01.043] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2016] [Revised: 01/10/2017] [Accepted: 01/13/2017] [Indexed: 12/24/2022]
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28
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Ti(IV) carrying polydopamine-coated, monodisperse-porous SiO 2 microspheres with stable magnetic properties for highly selective enrichment of phosphopeptides. Colloids Surf B Biointerfaces 2017; 153:280-290. [DOI: 10.1016/j.colsurfb.2017.02.028] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 01/27/2017] [Accepted: 02/20/2017] [Indexed: 11/21/2022]
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29
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Zhang H, Ou J, Yao Y, Wang H, Liu Z, Wei Y, Ye M. Facile Preparation of Titanium(IV)-Immobilized Hierarchically Porous Hybrid Monoliths. Anal Chem 2017; 89:4655-4662. [PMID: 28316239 DOI: 10.1021/acs.analchem.7b00242] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Hierarchically porous materials have become a key feature of biological materials and have been widely applied for adsorption or catalysis. Herein, we presented a new approach to directly prepare a phosphate-functionalized hierarchically porous hybrid monolith (HPHM), which simultaneously contained mesopores and macropores. The design was based on the copolymerization of polyhedral oligomeric vinylsilsesquioxanes (vinylPOSS) and vinylphosphonic acid (VPA) by adding degradable polycaprolactone (PCL) additive. The phosphate groups could be directly introduced into the hybrid monoliths. This approach was simple and time-saving, and overcame the defect of a rigorous, complex process for preparing traditional Ti4+-immobilized metal ion affinity chromatography (IMAC) materials. The specific surface area of an optimal hybrid monolith could reach 502 m2/g obtained by nitrogen adsorption/desorption measurements, which originated from the degradation of PCL. Meanwhile, the characterization of scanning electron microscopy (SEM) and mercury intrusion porosimetry (MIP) also suggested that the macropores existed in the hybrid monoliths. The size of macropores could be controlled by the content of PCL in the polymerization mixture. The prepared Ti4+-IMAC HPHMs exhibited high adsorption capacity (63.6 mg/g for pyridocal 5'-phosphatemonohydrate), and excellent enrichment specificity (tryptic digest of β-casein/BSA at a molar ratio of 1:1000) and sensitivity (tryptic digest of 5 fmol of β-casein). Moreover, the Ti4+-IMAC HPHMs provided effective enrichment ability of low-abundance phosphopeptides from human serum and HeLa cell digests.
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Affiliation(s)
- Haiyang Zhang
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) , Dalian 116023, China.,Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University , Xi'an 710069, China.,University of Chinese Academy of Sciences , Beijing 100049, China
| | - Junjie Ou
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) , Dalian 116023, China
| | - Yating Yao
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) , Dalian 116023, China.,University of Chinese Academy of Sciences , Beijing 100049, China
| | - Hongwei Wang
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) , Dalian 116023, China.,University of Chinese Academy of Sciences , Beijing 100049, China
| | - Zhongshan Liu
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) , Dalian 116023, China.,University of Chinese Academy of Sciences , Beijing 100049, China
| | - Yinmao Wei
- Key Laboratory of Synthetic and Natural Function Molecule Chemistry of Ministry of Education, College of Chemistry and Materials Science, Northwest University , Xi'an 710069, China
| | - Mingliang Ye
- Key Laboratory of Separation Science for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS) , Dalian 116023, China
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30
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Dai J, Wang M, Liu H. Highly selective enrichment of phosphopeptides using Zr4+-immobilized Titania nanoparticles. Talanta 2017; 164:222-227. [DOI: 10.1016/j.talanta.2016.11.058] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2016] [Revised: 11/24/2016] [Accepted: 11/26/2016] [Indexed: 10/20/2022]
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31
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BAE SW, KIM JI, CHOI I, SUNG J, HONG JI, YEO WS. Zinc Ion-immobilized Magnetic Microspheres for Enrichment and Identification of Multi-phosphorylated Peptides by Mass Spectrometry. ANAL SCI 2017; 33:1381-1386. [DOI: 10.2116/analsci.33.1381] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Affiliation(s)
- Se Won BAE
- Green Chemistry and Materials Group, Korea Institute of Industrial Technology (KITECH)
| | - Jae Il KIM
- Department of Bioscience and Biotechnology, Bio/Molecular Informatics Center, Konkuk University
| | - Inseong CHOI
- Department of Bioscience and Biotechnology, Bio/Molecular Informatics Center, Konkuk University
| | - Jiha SUNG
- Department of Applied Chemistry, Dongduk Women’s University
| | - Jong-In HONG
- Department of Chemistry, Seoul National University
| | - Woon-Seok YEO
- Department of Bioscience and Biotechnology, Bio/Molecular Informatics Center, Konkuk University
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32
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Li D, Bie Z. Metal–organic framework incorporated monolithic capillary for selective enrichment of phosphopeptides. RSC Adv 2017. [DOI: 10.1039/c7ra00263g] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
Protein phosphorylation is a major post-translational modification, which plays a central role in the cellular signaling of numerous biological processes.
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Affiliation(s)
- Daojin Li
- College of Chemistry and Chemical Engineering
- Henan Key Laboratory of Fuction-Oriented Porous Materials
- Luoyang Normal University
- Luoyang 471022
- P. R. China
| | - Zijun Bie
- Department of Chemistry
- Bengbu Medical College
- China
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33
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Effective approach towards Si-bilayer-IDA modified CoFe2O4 magnetic nanoparticles for high efficient protein separation. Colloids Surf B Biointerfaces 2016; 146:468-74. [DOI: 10.1016/j.colsurfb.2016.06.043] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2016] [Revised: 06/24/2016] [Accepted: 06/24/2016] [Indexed: 11/21/2022]
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34
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Ma X, Ding C, Yao X, Jia L. Ethylene glycol assisted preparation of Ti4+-modified polydopamine coated magnetic particles with rough surface for capture of phosphorylated proteins. Anal Chim Acta 2016; 929:23-30. [DOI: 10.1016/j.aca.2016.04.058] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2016] [Revised: 04/12/2016] [Accepted: 04/30/2016] [Indexed: 11/30/2022]
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35
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Wang J, Li J, Wang Y, Gao M, Zhang X, Deng C. A novel double-component MOAC honeycomb composite with pollen grains as a template for phosphoproteomics research. Talanta 2016; 154:141-9. [DOI: 10.1016/j.talanta.2016.03.061] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Revised: 03/14/2016] [Accepted: 03/19/2016] [Indexed: 02/08/2023]
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36
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Li XS, Yuan BF, Feng YQ. Recent advances in phosphopeptide enrichment: Strategies and techniques. Trends Analyt Chem 2016. [DOI: 10.1016/j.trac.2015.11.001] [Citation(s) in RCA: 76] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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37
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Ke Y, Garg B, Ling YC. A novel graphene-based label-free fluorescence 'turn-on' nanosensor for selective and sensitive detection of phosphorylated species in biological samples and living cells. NANOSCALE 2016; 8:4547-4556. [PMID: 26758942 DOI: 10.1039/c5nr07261a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A novel label-free fluorescence 'turn-on' nanosensor has been developed for highly selective and sensitive detection of phosphorylated species (Ps) in biological samples and living cells. The design strategy relies on the use of Ti(4+)-immobilized polydopamine (PDA) coated reduced graphene oxide (rGO@PDA-Ti(4+)) that serves as an attractive platform to bind riboflavin 5'-monophosphate molecules (FMNs) through ion-pair interactions between phosphate groups and Ti(4+). The as-prepared rGO@PDA-Ti(4+)-FMNs (nanosensor), fluoresce only weakly due to the ineffective Förster resonance energy transfer between the FMNs and rGO@PDA-Ti(4+). The experimental findings revealed that the microwave-assisted interaction of the nanosensor with α-, β-casein, ovalbumin, human serum, non-fat milk, egg white, and living cells (all containing Ps) releases FMNs (due to the high formation constant between phosphate groups and Ti(4+)), leading to an excellent fluorescence 'turn-on' response. The fluorescence spectroscopy, confocal microscopy, and MALDI-TOF MS spectrometry were used to detect Ps both qualitatively and quantitatively. Under the optimized conditions, the nanosensor showed a detection limit of ca. 118.5, 28.9, and 54.8 nM for the tryptic digests of α-, β-casein and ovalbumin, respectively. Furthermore, the standard addition method was used as a bench-mark proof for phosphopeptide quantification in egg white samples. We postulate that the present quantitative assay for Ps holds tremendous potential and may pave the way to disease diagnostics in the near future.
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Affiliation(s)
- Yaotang Ke
- Department of Chemistry, National Tsing Hua University, Kuang-Fu Road, Hsinchu, 30013, Taiwan.
| | - Bhaskar Garg
- Department of Chemistry, National Tsing Hua University, Kuang-Fu Road, Hsinchu, 30013, Taiwan.
| | - Yong-Chien Ling
- Department of Chemistry, National Tsing Hua University, Kuang-Fu Road, Hsinchu, 30013, Taiwan. and Institute of Nano Engineering and Microsystem, National Tsing Hua University, Kuang-Fu Road, Hsinchu, 30013, Taiwan
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38
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Chen Y, Li D, Bie Z, He X, Liu Z. Coupling of Phosphate-Imprinted Mesoporous Silica Nanoparticles-Based Selective Enrichment with Matrix-Assisted Laser Desorption Ionization-Time-of-Flight Mass Spectrometry for Highly Efficient Analysis of Protein Phosphorylation. Anal Chem 2016; 88:1447-54. [DOI: 10.1021/acs.analchem.5b04343] [Citation(s) in RCA: 84] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Yang Chen
- State Key Laboratory
of Analytical
Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Daojin Li
- State Key Laboratory
of Analytical
Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Zijun Bie
- State Key Laboratory
of Analytical
Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Xinpei He
- State Key Laboratory
of Analytical
Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Zhen Liu
- State Key Laboratory
of Analytical
Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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39
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Zhang L, Xiong Z, Chen Y, Peng L, Yu B, Gao X, Zhang R, Zhang L, Zhang W. Soft-template synthesis of hydrophilic metallic zirconia nanoparticle-incorporated ordered mesoporous carbon composite and its application in phosphopeptide enrichment. RSC Adv 2016. [DOI: 10.1039/c6ra00326e] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
The novel metallic zirconia incorporated OMC as a metal oxide affinity chromatography material was successfully applied to detection and identification the low-abundance phosphopeptides from non-fat milk.
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Affiliation(s)
- Lei Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Zhichao Xiong
- Shanghai Institute of Ceramics
- Chinese Academy of Sciences
- Shanghai
- P. R. China
| | - Yajing Chen
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Li Peng
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Bohao Yu
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Xiaodi Gao
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Runsheng Zhang
- Shanghai Key Laboratory of Crime Scene Evidence
- Shanghai Research Institute of Criminal Science and Technology
- Shanghai Public Security Bureau
- Shanghai
- P. R. China
| | - Lingyi Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
| | - Weibing Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry
- Department of Chemistry and Molecular Engineering
- East China University of Science and Technology
- Shanghai
- P. R. China
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40
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Batalha ÍL, Roque ACA. Phosphopeptide Enrichment Using Various Magnetic Nanocomposites: An Overview. Methods Mol Biol 2016; 1355:193-209. [PMID: 26584927 DOI: 10.1007/978-1-4939-3049-4_13] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Magnetic nanocomposites are hybrid structures consisting of an iron oxide (Fe3O4/γ-Fe2O3) superparamagnetic core and a coating shell which presents affinity for a specific target molecule. Within the scope of phosphopeptide enrichment, the magnetic core is usually first functionalized with an intermediate layer of silica or carbon to improve dispersibility and increase specific area, and then with an outer layer of a phosphate-affinity material. Fe3O4-coating materials include metal oxides, rare earth metal-based compounds, immobilized-metal ions, polymers, and many others. This chapter provides a generic overview of the different materials that can be found in literature and their advantages and drawbacks.
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Affiliation(s)
- Íris L Batalha
- UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal.
- Department of Chemical Engineering and Biotechnology, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QT, UK.
| | - Ana Cecília A Roque
- UCIBIO, REQUIMTE, Departamento de Química, Faculdade de Ciências e Tecnologia, Universidade Nova de Lisboa, 2829-516, Caparica, Portugal
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41
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Gu Y, Guo Y, Li H, Su R, Sun K, Deng Q, Wang S. Poly(guanidinium ionic liquid)s particles as affinity platform for highly selective enrichment of phosphopeptides. RSC Adv 2016. [DOI: 10.1039/c6ra00464d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Is it feasible or not that the poly(guanidinium ionic liquid)s material are employed to enrich phosphopeptides?
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Affiliation(s)
- Yuchen Gu
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
| | - Yanling Guo
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
| | - Haijie Li
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
| | - Rina Su
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
| | - Kejin Sun
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
| | - Qiliang Deng
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
| | - Shuo Wang
- Key Laboratory of Food Nutrition and Safety
- Ministry of Education
- Tianjin Key Laboratory of Food Nutrition and Safety
- College of Chemical Engineering and Materials Science
- Tianjin University of Science and Technology
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42
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Mayne J, Ning Z, Zhang X, Starr AE, Chen R, Deeke S, Chiang CK, Xu B, Wen M, Cheng K, Seebun D, Star A, Moore JI, Figeys D. Bottom-Up Proteomics (2013-2015): Keeping up in the Era of Systems Biology. Anal Chem 2015; 88:95-121. [PMID: 26558748 DOI: 10.1021/acs.analchem.5b04230] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Janice Mayne
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Zhibin Ning
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Xu Zhang
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Amanda E Starr
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Rui Chen
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Shelley Deeke
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Cheng-Kang Chiang
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Bo Xu
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Ming Wen
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Kai Cheng
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Deeptee Seebun
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Alexandra Star
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Jasmine I Moore
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
| | - Daniel Figeys
- Ottawa Institute of Systems Biology, Department of Biochemistry, Microbiology and Immunology, University of Ottawa , 451 Smyth Rd., Ottawa, Ontario, Canada , K1H8M5
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43
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Liang J, Cheng L, Struckhoff JJ, Ravi N. Investigating triazine-based modification of hyaluronan using statistical designs. Carbohydr Polym 2015; 132:472-80. [PMID: 26256372 PMCID: PMC5787032 DOI: 10.1016/j.carbpol.2015.06.067] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 06/16/2015] [Accepted: 06/18/2015] [Indexed: 11/19/2022]
Abstract
Hyaluronan (HA) and its derivatives have been extensively researched for many biomedical applications. To precisely tailor the property of HA by derivatizing it to a pre-determined extent is challenging, yet critical. In this paper, we used 2-chloro-4,6-dimethoxy-1,3,5-triazine (CDMT) and N-methylmorpholine (NMM) to derivatize HA via a triazine-based coupling reaction. Using a fractional factorial (FF) design, we observed that water content in the solvent, and molar ratios of CDMT and NaHCO3 to the carboxylate were the significant factors controlling the derivatization. We investigated how the effect of each factor changes as reaction conditions change. Moreover, by altering the amount of CDMT and NaHCO3, we developed a cubic regression model for precise control of the extent of derivatization using a response surface methodology (RSM) with a D-optimal design. No spurious peaks were detected by (1)H NMR spectrum and only 10% decrease of molecular weight of the derivatized HA was determined by GPC. The HA with 6% modification was relatively biocompatible up to 15 mg/mL.
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Affiliation(s)
- Jue Liang
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, Saint Louis, MO, USA
| | - Lulu Cheng
- Statistics Technology Center, Monsanto Company, Saint Louis, Missouri, USA
| | - Jessica J Struckhoff
- Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, Saint Louis, MO, USA
| | - Nathan Ravi
- Department of Ophthalmology and Visual Sciences, Washington University School of Medicine, Saint Louis, MO, USA; Department of Energy, Environmental and Chemical Engineering, Washington University in St. Louis, Saint Louis, MO, USA; Research and Development, Veterans Affairs Health Care System, Saint Louis, MO, USA.
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44
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Liu H, Zhou J, Huang H. Amine-functionalized TiO 2 nanoparticles for highly selective enrichment of phosphopeptides. Talanta 2015; 143:431-437. [DOI: 10.1016/j.talanta.2015.05.019] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2015] [Revised: 04/29/2015] [Accepted: 05/05/2015] [Indexed: 01/20/2023]
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45
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Chen Y, Xiong Z, Peng L, Gan Y, Zhao Y, Shen J, Qian J, Zhang L, Zhang W. Facile Preparation of Core-Shell Magnetic Metal-Organic Framework Nanoparticles for the Selective Capture of Phosphopeptides. ACS APPLIED MATERIALS & INTERFACES 2015; 7:16338-16347. [PMID: 26156207 DOI: 10.1021/acsami.5b03335] [Citation(s) in RCA: 131] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
In regard to the phosphoproteome, highly specific and efficient capture of heteroideous kinds of phosphopeptides from intricate biological sample attaches great significance to comprehensive and in-depth phosphorylated proteomics research. However, until now, it has been a challenge. In this study, a new-fashioned porous immobilized metal ion affinity chromatography (IMAC) material was designed and fabricated to promote the selectivity and detection limit for phosphopeptides by covering a metal-organic frameworks (MOFs) shell onto Fe3O4 nanoparticles, taking advantage of layer-by-layer method (the synthesized nanoparticle denoted as Fe3O4@MIL-100 (Fe)). The thick layer renders the nanoparticles with perfect hydrophilic character, super large surface area, large immobilization of the Fe(3+) ions and the special porous structure. Specifically, the as-synthesized MOF-decorated magnetic nanoparticles own an ultra large surface area which is up to 168.66 m(2) g(-1) as well as two appropriate pore sizes of 1.93 and 3.91 nm with a narrow grain-size distribution and rapid separation under the magnetic circumstance. The unique features vested the synthesized nanoparticles an excellent ability for phosphopeptides enrichment with high selectivity for β-casein (molar ratio of β-casein/BSA, 1:500), large enrichment capacity (60 mg g(-1)), low detection limit (0.5 fmol), excellent phosphopeptides recovery (above 84.47%), fine size-exclusion of high molecular weight proteins, good reusability, and desirable batch-to-batch repeatability. Furthermore, encouraged by the experimental results, we successfully performed the as-prepared porous IMAC nanoparticle in the specific capture of phosphopeptides from the human serum (both the healthy and unhealthy) and nonfat milk, which proves itself to be a good candidate for the enrichment and detection of the low-abundant phosphopeptides from complicated biological samples.
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Affiliation(s)
- Yajing Chen
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Zhichao Xiong
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Li Peng
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Yangyang Gan
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Yiman Zhao
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Jie Shen
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Junhong Qian
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Lingyi Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
| | - Weibing Zhang
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology, Shanghai 200237, China
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46
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Wang ZG, Lv N, Bi WZ, Zhang JL, Ni JZ. Development of the affinity materials for phosphorylated proteins/peptides enrichment in phosphoproteomics analysis. ACS APPLIED MATERIALS & INTERFACES 2015; 7:8377-92. [PMID: 25845677 DOI: 10.1021/acsami.5b01254] [Citation(s) in RCA: 97] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Reversible protein phosphorylation is a key event in numerous biological processes. Mass spectrometry (MS) is the most powerful analysis tool in modern phosphoproteomics. However, the direct MS analysis of phosphorylated proteins/peptides is still a big challenge because of the low abundance and insufficient ionization of phosphorylated proteins/peptides as well as the suppression effects of nontargets. Enrichment of phosphorylated proteins/peptides by affinity materials from complex biosamples is the most widely used strategy to enhance the MS detection. The demand of efficiently enriching phosphorylated proteins/peptides has spawned diverse affinity materials based on different enrichment principles (e.g., electronic attraction, chelating). In this review, we summarize the recent development of various affinity materials for phosphorylated proteins/peptides enrichment. We will highlight the design and fabrication of these affinity materials, discuss the enrichment mechanisms involved in different affinity materials, and suggest the future challenges and research directions in this field.
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Affiliation(s)
- Zhi-Gang Wang
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- ‡University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Nan Lv
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- ‡University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Wen-Zhi Bi
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- ‡University of Chinese Academy of Sciences, Beijing 100049, P. R. China
| | - Ji-Lin Zhang
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
| | - Jia-Zuan Ni
- †State Key Laboratory of Rare Earth Resource Utilization, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, P. R. China
- §College of Life Science, Shenzhen University, Shenzhen 518060, P. R. China
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47
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Shi C, Lin Q, Deng C. Preparation of on-plate immobilized metal ion affinity chromatography platform via dopamine chemistry for highly selective isolation of phosphopeptides with matrix assisted laser desorption/ionization mass spectrometry analysis. Talanta 2015; 135:81-6. [DOI: 10.1016/j.talanta.2014.12.041] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2014] [Revised: 12/22/2014] [Accepted: 12/25/2014] [Indexed: 11/25/2022]
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48
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Abdelhamid HN, Wu HF. Proteomics analysis of the mode of antibacterial action of nanoparticles and their interactions with proteins. Trends Analyt Chem 2015. [DOI: 10.1016/j.trac.2014.09.010] [Citation(s) in RCA: 83] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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49
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Zhang Q, Zhang Q, Xiong Z, Wan H, Chen X, Zou H. Facile preparation of carbon-functionalized ordered magnetic mesoporous silica composites for highly selective enrichment of N-glycans. RSC Adv 2015. [DOI: 10.1039/c5ra11998g] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A novel carbon-functionalized ordered magnetic mesoporous silica composite was designed and synthesized.
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Affiliation(s)
- Quanqing Zhang
- Division of Metrology in Chemistry
- National Institute of Metrology
- Beijing 100029
- China
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
| | - Qinghe Zhang
- Division of Metrology in Chemistry
- National Institute of Metrology
- Beijing 100029
- China
| | - Zhichao Xiong
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Hao Wan
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
| | - Xiaoting Chen
- Division of Metrology in Chemistry
- National Institute of Metrology
- Beijing 100029
- China
| | - Hanfa Zou
- CAS Key Laboratory of Separation Sciences for Analytical Chemistry
- National Chromatographic R&A Center
- Dalian Institute of Chemical Physics
- Chinese Academy of Sciences (CAS)
- Dalian 116023
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50
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Xiong Z, Chen Y, Zhang L, Ren J, Zhang Q, Ye M, Zhang W, Zou H. Facile synthesis of guanidyl-functionalized magnetic polymer microspheres for tunable and specific capture of global phosphopeptides or only multiphosphopeptides. ACS APPLIED MATERIALS & INTERFACES 2014; 6:22743-22750. [PMID: 25466400 DOI: 10.1021/am506882b] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The highly selective and efficient capture of heterogeneous types of phosphopeptides is critical for comprehensive and in-depth phosphoproteome analysis, but it still remains a challenge since the lack of affinity material with large binding capacity and controllable specificity. Here, a new affinity material was prepared to improve the enrichment capacity and endue the tunable specificity by introducing guanidyl onto poly(glycidyl methacrylate) (PGMA) modified Fe3O4 microsphere (denoted as Fe3O4@PGMA-Guanidyl). The thick polymer shell endows the composite microsphere with large amount of guanidyl and is beneficial to enhancing the affinity interaction between phosphopeptides and the material. Interestingly, the Fe3O4@PGMA-Guanidyl possesses tunable enriching ability for global phosphopeptides or only multiphosphopeptides through simple regulation of buffer composition. The composite has large enrichment capacity (200 mg g(-1)), extremely high detection sensitivity (0.5 fmol), high enrichment recovery (91.30%), great specificity, and rapid magnetic separation. Moreover, the result of the application to capture of phosphopeptides from tryptic digest of nonfat milk has demonstrated the great potential of Fe3O4@PGMA-Guanidyl in detection and identification of low-abundance phosphopeptides of interest in biological sample.
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Affiliation(s)
- Zhichao Xiong
- Shanghai Key Laboratory of Functional Materials Chemistry, Department of Chemistry and Molecular Engineering, East China University of Science and Technology , Shanghai 200237, China
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