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Chatterjee P, Dutta SS, Agarwal M, Dey S, Chakraborty T. UV-A-Induced Photoisomerization and Photodimerization of Curcumin: An Ion Mobility Mass Spectrometry Study. J Phys Chem A 2024; 128:548-562. [PMID: 38206070 DOI: 10.1021/acs.jpca.3c05933] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2024]
Abstract
Curcumin, the bioactive compound present in spice plant turmeric, has been shown to exhibit selective phototoxic activities toward mammalian cancer cells, and it is being used extensively as a photosensitizer (PS) in photodynamic therapies (PDT). However, so far, the fate of curcumin toward photochemical transformations is not well understood. Here we report our findings of a number of novel photochemical reaction channels of curcumin in water-methanol mixture, like photoisomerization, photodimerization, and photooxidation (H2-loss). The reaction was performed by irradiating the curcumin solution with ultraviolet (UV) light of wavelength 350 nm, which is abundant in the earth's troposphere. Product identification and structure elucidation are done by employing an integrated method of drift tube ion mobility mass spectrometry (DTIMS) in combination with high-performance liquid chromatography (HPLC) and collision-induced dissociation (CID) of the mass-selected molecular ions. Two photoisomers of curcumin produced as a result of trans-cis configurational changes about C═C double bonds in the excited state have been identified, and it has been shown that they could serve as the precursors for formation of isomeric dimers via [2 + 2] cycloaddition and H2-loss products. Comparisons of the experimentally measured collision cross-section (CCS) values of the reactant and product ions obtained by the DTIMS method with those predicted by the electronic structure theory are found to be very effective for the discrimination of the produced photoisomers. The observed photochemical reaction channels are potentially significant toward uses of curcumin as a photosensitizer in photodynamic therapy.
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Affiliation(s)
- Piyali Chatterjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
| | - Subhra Sankar Dutta
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
| | - Megha Agarwal
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
| | - Supriyo Dey
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
| | - Tapas Chakraborty
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
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2
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Zhang H, Luo M, Wang H, Ren F, Yin Y, Zhu ZJ. AllCCS2: Curation of Ion Mobility Collision Cross-Section Atlas for Small Molecules Using Comprehensive Molecular Representations. Anal Chem 2023; 95:13913-13921. [PMID: 37664900 DOI: 10.1021/acs.analchem.3c02267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
The development of ion mobility-mass spectrometry (IM-MS) has revolutionized the analysis of small molecules, such as metabolomics, lipidomics, and exposome studies. The curation of comprehensive reference collision cross-section (CCS) databases plays a pivotal role in the successful application of IM-MS for small-molecule analysis. In this study, we presented AllCCS2, an enhanced version of AllCCS, designed for the universal prediction of the ion mobility CCS values of small molecules. AllCCS2 incorporated newly available experimental CCS data, including 10,384 records and 7713 unified values, as training data. By leveraging a neural network trained on diverse molecular representations encompassing mass spectrometry features, molecular descriptors, and graph features extracted using a graph convolutional network, AllCCS2 achieved exceptional prediction accuracy. AllCCS2 achieved median relative error (MedRE) values of 0.31, 0.72, and 1.64% in the training, validation, and testing sets, respectively, surpassing existing CCS prediction tools in terms of accuracy and coverage. Furthermore, AllCCS2 exhibited excellent compatibility with different instrument platforms (DTIMS, TWIMS, and TIMS). The prediction uncertainties in AllCCS2 from the training data and the prediction model were comprehensively investigated by using representative structure similarity and model prediction variation. Notably, small molecules with high structural similarities to the training set and lower model prediction variation exhibited improved accuracy and lower relative errors. In summary, AllCCS2 serves as a valuable resource to support applications of IM-MS technologies. The AllCCS2 database and tools are freely accessible at http://allccs.zhulab.cn/.
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Affiliation(s)
- Haosong Zhang
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Mingdu Luo
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hongmiao Wang
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fandong Ren
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
| | - Yandong Yin
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
| | - Zheng-Jiang Zhu
- Interdisciplinary Research Center on Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
- Shanghai Key Laboratory of Aging Studies, Shanghai 201210, China
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3
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Paglia G, Smith AJ, Astarita G. Ion mobility mass spectrometry in the omics era: Challenges and opportunities for metabolomics and lipidomics. MASS SPECTROMETRY REVIEWS 2022; 41:722-765. [PMID: 33522625 DOI: 10.1002/mas.21686] [Citation(s) in RCA: 86] [Impact Index Per Article: 43.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Revised: 01/17/2021] [Accepted: 01/17/2021] [Indexed: 06/12/2023]
Abstract
Researchers worldwide are taking advantage of novel, commercially available, technologies, such as ion mobility mass spectrometry (IM-MS), for metabolomics and lipidomics applications in a variety of fields including life, biomedical, and food sciences. IM-MS provides three main technical advantages over traditional LC-MS workflows. Firstly, in addition to mass, IM-MS allows collision cross-section values to be measured for metabolites and lipids, a physicochemical identifier related to the chemical shape of an analyte that increases the confidence of identification. Second, IM-MS increases peak capacity and the signal-to-noise, improving fingerprinting as well as quantification, and better defining the spatial localization of metabolites and lipids in biological and food samples. Third, IM-MS can be coupled with various fragmentation modes, adding new tools to improve structural characterization and molecular annotation. Here, we review the state-of-the-art in IM-MS technologies and approaches utilized to support metabolomics and lipidomics applications and we assess the challenges and opportunities in this growing field.
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Affiliation(s)
- Giuseppe Paglia
- School of Medicine and Surgery, University of Milano-Bicocca, Vedano al Lambro (MB), Italy
| | - Andrew J Smith
- School of Medicine and Surgery, University of Milano-Bicocca, Vedano al Lambro (MB), Italy
| | - Giuseppe Astarita
- Department of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington, District of Columbia, USA
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4
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Moran-Garrido M, Camunas-Alberca SM, Gil-de-la Fuente A, Mariscal A, Gradillas A, Barbas C, Sáiz J. Recent developments in data acquisition, treatment and analysis with ion mobility-mass spectrometry for lipidomics. Proteomics 2022; 22:e2100328. [PMID: 35653360 DOI: 10.1002/pmic.202100328] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 05/29/2022] [Accepted: 05/30/2022] [Indexed: 11/08/2022]
Abstract
Lipids are involved in many biological processes and their study is constantly increasing. To identify a lipid among thousand requires of reliable methods and techniques. Ion Mobility (IM) can be coupled with Mass Spectrometry (MS) to increase analytical selectivity in lipid analysis of lipids. IM-MS has experienced an enormous development in several aspects, including instrumentation, sensitivity, amount of information collected and lipid identification capabilities. This review summarizes the latest developments in IM-MS analyses for lipidomics and focusses on the current acquisition modes in IM-MS, the approaches for the pre-treatment of the acquired data and the subsequent data analysis. Methods and tools for the calculation of Collision Cross Section (CCS) values of analytes are also reviewed. CCS values are commonly studied to support the identification of lipids, providing a quasi-orthogonal property that increases the confidence level in the annotation of compounds and can be matched in CCS databases. The information contained in this review might be of help to new users of IM-MS to decide the adequate instrumentation and software to perform IM-MS experiments for lipid analyses, but also for other experienced researchers that can reconsider their routines and protocols. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- María Moran-Garrido
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain
| | - Sandra M Camunas-Alberca
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain
| | - Alberto Gil-de-la Fuente
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain.,Departamento de Tecnologías de la Información, Escuela Politécnica Superior, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660 Boadilla del Monte, Madrid, Spain
| | - Antonio Mariscal
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain.,Departamento de Tecnologías de la Información, Escuela Politécnica Superior, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660 Boadilla del Monte, Madrid, Spain
| | - Ana Gradillas
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain
| | - Coral Barbas
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain
| | - Jorge Sáiz
- Centre for Metabolomics and Bioanalysis (CEMBIO), Departamento de Química y Bioquímica, Facultad de Farmacia, Universidad San Pablo-CEU, CEU Universities, Urbanización Montepríncipe, 28660, Boadilla del Monte, Madrid, Spain
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Chatterjee P, Dutta SS, Chakraborty T. Tautomers and Rotamers of Curcumin: A Combined UV Spectroscopy, High-Performance Liquid Chromatography, Ion Mobility Mass Spectrometry, and Electronic Structure Theory Study. J Phys Chem A 2022; 126:1591-1604. [PMID: 35239351 DOI: 10.1021/acs.jpca.1c08612] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
The structures of tautomers and rotameric forms of curcumin, the bioactive compound present in spice plant turmeric, have been investigated using ion mobility mass spectrometry (IMMS) in conjunction with high-performance liquid chromatography (HPLC) and UV-visible spectroscopy. Two tautomeric forms of this β-diketone compound, keto-enol and diketo, have been chromatographically separated, and the electronic absorption spectra for these two tautomeric forms in methanol solution have been recorded separately for the first time. The molecular identity of the HPLC-separated solution fractions is established unambiguously by recording the mass and fragmentation spectra simultaneously. The ion mobility spectrum for the deprotonated curcumin anion, [Cur-H]-, corresponding to the diketo tautomer, displays only one peak (P), and the collision cross-section (CCS) value is measured to be 185.9 Å2. However, the ion mobility spectrum corresponding to the HPLC-separated keto-enol tautomer shows three distinctly separated peaks, P, Q, and R, with CCS values of 185.9, 194.8, and 203.4 Å2, respectively, whereby peak R appears to be the most intense one, followed by peaks P and Q. The theoretically calculated CCS values of different isomers of [Cur-H]-, optimized by electronic structure theory methods, display satisfactory correlation with the experimentally observed values, corroborating our assignments. The spectral attributes also indicate the occurrence of structural rearrangements in the electrospray ionization process. With the aid of the electronic structure calculation, low-energy pathways for the occurrence of the structural isomerization to surpass the energy barrier are suggested, which are consistent with the assignments of the peaks observed in the IM spectra.
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Affiliation(s)
- Piyali Chatterjee
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
| | - Subhra Sankar Dutta
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
| | - Tapas Chakraborty
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A Raja S C Mullick Road, Jadavpur, Kolkata 700032, India
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6
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Zhang L, Wang Y, Zheng F, Zhu D, Liang Y, Shi Q. Influence Exerted by the Solvent Effect on the Mobility Peak of 1,8-Naphthalic Anhydride in Ion Mobility Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2022; 33:457-462. [PMID: 35089717 DOI: 10.1021/jasms.1c00299] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The collision cross-section (CCS) values of ions determined by ion mobility-mass spectrometry (IM-MS) can be used to deduce the shape and size of the ions. For each compound, as well as its isomer or tautomer, a unique arrival time peak was obtained in extracted ion mobility (EIM) spectra, which corresponded to a specific CCS value. However, the generation of solvated ions by electrospray ionization (ESI) increases the number of mobility peaks, which makes the EIM spectra difficult to interpret. In this study, solvent clusters formed by acetonitrile and methanol around 1,8-naphthalic anhydride (1,8-NA) cations ([C12H6O3 + H]+1,8-NA) were investigated using trapped ion mobility spectrometry-time-of-flight mass spectrometry (TIMS-TOF MS). The effects of infusion flow rate, nebulizer gas pressure, drying gas rate, and drying gas temperature on the formation of solvent clusters from acetonitrile and methanolic solution were systematically studied. The formation of solvent clusters was observed with infusion flow rates increased, which was manifested by the larger experimental CCS values of [C12H6O3 + H]+1,8-NA. Acetonitrile tended to form solvent clusters around ions more readily than methanol. These solvent clusters were stable enough to be detected by TIMS, but they cannot survive under ion activation conditions of mass spectrometry (MS). Increasing the nebulizer gas pressure seems to be a better way to eliminate the formation of solvent clusters in TIMS-TOF MS and give a "cleaner" EIM spectra. The current research demonstrates that more attention should be paid to the solvent effect on CCS values and their interpretation.
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Affiliation(s)
- Lingzhi Zhang
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing 102249, P.R. China
| | - Yinghao Wang
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing 102249, P.R. China
| | - Fang Zheng
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing 102249, P.R. China
| | - Di Zhu
- College of Science, China University of Petroleum, Beijing 102249, P.R. China
| | - Yongmei Liang
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing 102249, P.R. China
| | - Quan Shi
- State Key Laboratory of Heavy Oil Processing, China University of Petroleum, Beijing 102249, P.R. China
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7
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Ion Mobility Mass Spectrometry for Structural Elucidation of Petroleum Compounds. Trends Analyt Chem 2022. [DOI: 10.1016/j.trac.2022.116597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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8
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Haler JRN, Béchet E, Kune C, Far J, De Pauw E. Geometric Analysis of Shapes in Ion Mobility-Mass Spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2022; 33:273-283. [PMID: 35020377 DOI: 10.1021/jasms.1c00266] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Experimental ion mobility-mass spectrometry (IM-MS) results are often correlated to three-dimensional structures based on theoretical chemistry calculations. The bottleneck of this approach is the need for accurate values, both experimentally and theoretically predicted. Here, we continue the development of the trend-based analyses to extract structural information from experimental IM-MS data sets. The experimental collision cross-sections (CCSs) of synthetic systems such as homopolymers and small ionic clusters are investigated in terms of CCS trends as a function of the number of repetitive units (e.g., degree of polymerization (DP) for homopolymers) and for each detected charge state. Then, we computed the projected areas of expanding but perfectly defined geometric objects using an in-house software called MoShade. The shapes were modeled using computer-aided design software where we considered only geometric factors: no atoms, mass, chemical potentials, or interactions were taken into consideration to make the method orthogonal to classical methods for 3D shape assessments using time-consuming computational chemistry. Our modeled shape evolutions favorably compared to experimentally obtained CCS trends, meaning that the apparent volume or envelope of homogeneously distributed mass effectively modeled the ion-drift gas interactions as sampled by IM-MS. The CCSs of convex shapes could be directly related to their surface area. More importantly, this relationship seems to hold even for moderately concave shapes, such as those obtained by geometry-optimized structures of ions from conventional computational chemistry methods. Theoretical sets of expanding beads-on-a-string shapes allowed extracting accurate bead and string dimensions for two homopolymers, without modeling any chemical interactions.
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Affiliation(s)
- Jean R N Haler
- Mass Spectrometry Laboratory, University of Liège, MolSys Research unit, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
- Luxembourg Institute of Science and Technology - LIST, Materials Research & Technology MRT Department, L-4422 Belvaux, Luxembourg
| | - Eric Béchet
- Aerospace & Mechanical Engineering Department, Computer-aided Geometric Design, University of Liège, B-4000 Liège, Belgium
| | - Christopher Kune
- Mass Spectrometry Laboratory, University of Liège, MolSys Research unit, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
| | - Johann Far
- Mass Spectrometry Laboratory, University of Liège, MolSys Research unit, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
| | - Edwin De Pauw
- Mass Spectrometry Laboratory, University of Liège, MolSys Research unit, Quartier Agora, Allée du Six Aout 11, B-4000 Liège, Belgium
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9
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Wang JY, Yin YH, Zheng JY, Liu LF, Yao ZP, Xin GZ. Least absolute shrinkage and selection operator-based prediction of collision cross section values for ion mobility mass spectrometric analysis of lipids. Analyst 2022; 147:1236-1244. [DOI: 10.1039/d1an02161c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A least absolute shrinkage and selection operator (LASSO)-based prediction method was developed for the prediction of lipids’ CCS values.
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Affiliation(s)
- Jian-Ying Wang
- State Key Laboratory of Natural Medicines, Department of Chinese Medicines Analysis, School of Traditional Chinese Pharmacy, China Pharmaceutical University, No. 24 Tongjia Lane, Nanjing, China
- State Key Laboratory of Chinese Medicine and Molecular Pharmacology (Incubation) and Shenzhen Key Laboratory of Food Biological Safety Control, Shenzhen Research Institute of Hong Kong Polytechnic University, Shenzhen 518057, China
- State Key Laboratory of Chemical Biology and Drug Discovery, Food Safety and Technology Research Centre and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong SAR, China
| | - Ying-Hao Yin
- State Key Laboratory of Natural Medicines, Department of Chinese Medicines Analysis, School of Traditional Chinese Pharmacy, China Pharmaceutical University, No. 24 Tongjia Lane, Nanjing, China
| | - Jia-Yi Zheng
- State Key Laboratory of Natural Medicines, Department of Chinese Medicines Analysis, School of Traditional Chinese Pharmacy, China Pharmaceutical University, No. 24 Tongjia Lane, Nanjing, China
| | - Li-Fang Liu
- State Key Laboratory of Natural Medicines, Department of Chinese Medicines Analysis, School of Traditional Chinese Pharmacy, China Pharmaceutical University, No. 24 Tongjia Lane, Nanjing, China
| | - Zhong-Ping Yao
- State Key Laboratory of Chinese Medicine and Molecular Pharmacology (Incubation) and Shenzhen Key Laboratory of Food Biological Safety Control, Shenzhen Research Institute of Hong Kong Polytechnic University, Shenzhen 518057, China
- State Key Laboratory of Chemical Biology and Drug Discovery, Food Safety and Technology Research Centre and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong SAR, China
| | - Gui-Zhong Xin
- State Key Laboratory of Natural Medicines, Department of Chinese Medicines Analysis, School of Traditional Chinese Pharmacy, China Pharmaceutical University, No. 24 Tongjia Lane, Nanjing, China
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Gandhi VD, Larriba-Andaluz C. Predicting ion mobility as a function of the electric field for small ions in light gases. Anal Chim Acta 2021; 1184:339019. [PMID: 34625252 DOI: 10.1016/j.aca.2021.339019] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Revised: 08/07/2021] [Accepted: 08/30/2021] [Indexed: 12/01/2022]
Abstract
High resolution mobility devices such as Field Asymmetric Waveform Ion Mobility Spectrometry (FAIMS) and Differential Mobility spectrometers (DMS) use strong electric fields to gas concentration ratios, E/N, to separate ions in the gas phase. While extremely successful, their empirical results show a non-linear, ion-dependent relation between mobility K and E/N that is difficult to characterize. The one-temperature theory Mason-Schamp equation, which is the most widely used ion mobility equation, unfortunately, cannot capture this behavior. When the two-temperature theory is used, it can be shown that the K-E/N behavior can be followed quite closely numerically by equating the effect of increasing the field to an increase in the ion temperature. This is attempted here for small ions in a Helium gas environment showing good agreement over the whole field range. To improve the numerical characterization, the Lennard-Jones (L-J) potentials may be optimized. This is attempted for Carbon, Hydrogen, Oxygen and Nitrogen at different degrees of theory up to the fourth approximation, which is assumed to be exact. The optimization of L-J improves the accuracy yielding errors of about 3% on average. The fact that a constant set of L-J potentials work for the whole range of E/N and for several molecules, also suggests that inelastic collisions can be circumvented in calculations for He. The peculiar K-E/N hump behaviors are studied, and whether mobility increases or decreases with E/N is shown to derive from a competition between relative kinetic energy and the interaction potentials.
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Affiliation(s)
- Viraj D Gandhi
- Mechanical Engineering, Purdue University, 610 Purdue Mall, West Lafayette, 47907, Indiana, United States; Mechanical Engineering, Indiana University Purdue University - Indianapolis, 723 W Michigan Street, Indianapolis, 46202, Indiana, United States
| | - Carlos Larriba-Andaluz
- Mechanical Engineering, Indiana University Purdue University - Indianapolis, 723 W Michigan Street, Indianapolis, 46202, Indiana, United States.
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11
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Ivashchenko DA, Cerqueira NM, Magalhães AL. Improving computational modeling coupled with ion mobility-mass spectrometry data for efficient drug metabolite structural determination. Struct Chem 2021. [DOI: 10.1007/s11224-021-01726-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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12
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Parchami R, Tabrizchi M. Effective collisional cross-section of small ions in the gas phase: Application to ion mobility spectrometry. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2021; 35:e9090. [PMID: 33760281 DOI: 10.1002/rcm.9090] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/25/2020] [Revised: 03/17/2021] [Accepted: 03/22/2021] [Indexed: 06/12/2023]
Abstract
RATIONALE The observed drift times of monoatomic ions, including alkali metal ions and halide anions, are not fully consistent with their size. When the effect of mass is included through the Mason-Schamp equation, the deviation gets worse so that the trend of the experimental collisional cross-sections becomes completely opposite to what is expected. This is attributed to the stronger local electric field around smaller ions. The strong electric field in the vicinity of a small ion leads to strong ion-neutral interactions and creates a drag force against ion motion. The smaller the ions, the stronger the interaction, because of the higher charge density. METHODS In view of this, a modified equation is introduced to describe the relationship between the observed drift times or ion mobilities and the cross-sections of small ions. Here, for small ions with high charge density, the experimental collision cross-section is expressed as the effective collision cross-section, Ωeff = σi (1 + α/ri 3 ), that takes into account both intrinsic ion size, σi , and the ion-molecule interactions through a correction term of α/ri 3 , which is proportional to the charge density. RESULTS A linear fit of the drift times of alkali metal ions and halide anions to the proposed equation showed relative deviations of <8.2%. The model successfully predicted the drift time of other small diatomic ions with reasonable error. CONCLUSIONS The proposed model can be used as a simple and efficient relationship in predicting the effective cross-section of small ions.
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Affiliation(s)
- Razieh Parchami
- Department of Chemistry, Isfahan University of Technology, Isfahan, 84156-83111, Iran
| | - Mahmoud Tabrizchi
- Department of Chemistry, Isfahan University of Technology, Isfahan, 84156-83111, Iran
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13
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van Outersterp RE, Martens J, Berden G, Koppen V, Cuyckens F, Oomens J. Mass spectrometry-based identification of ortho-, meta- and para-isomers using infrared ion spectroscopy. Analyst 2021; 145:6162-6170. [PMID: 32924040 DOI: 10.1039/d0an01119c] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Distinguishing positional isomers, such as compounds having different substitution patterns on an aromatic ring, presents a significant challenge for mass spectrometric analyses and is a frequently encountered difficulty in, for example, drug metabolism research. In contrast to mass spectrometry, IR spectroscopy is a well-known and powerful tool in the distinction of ortho-, meta- and para-isomers, but is not applicable to low-abundance compounds in complex mixtures such as often targeted in bioanalytical studies. Here, we demonstrate the use of infrared ion spectroscopy (IRIS) as a novel method that facilitates the differentiation between positional isomers of disubstituted phenyl-containing compounds and that can be applied in mass spectrometry-based complex mixture analysis. By analyzing different substitution patterns over several sets of isomeric compounds, we show that IRIS is able to consistently probe the diagnostic CH out-of-plane vibrations that are sensitive to positional isomerism. We show that these modes are largely independent of the chemical functionality contained in the ring substituents and of the type of ionization. We also show that IRIS spectra often identify the positional isomer directly, even in the absence of reference spectra obtained from physical standards or from computational prediction. We foresee that this method will be generally applicable to the identification of disubstituted phenyl-containing compounds.
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Affiliation(s)
- Rianne E van Outersterp
- Radboud University, Institute for Molecules and Materials, FELIX Laboratory, Toernooiveld 7, 6525ED Nijmegen, The Netherlands.
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14
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Pérez-López AV, Simpson J, Clench MR, Gomez-Vargas AD, Ordaz-Ortiz JJ. Localization and Composition of Fructans in Stem and Rhizome of Agave tequilana Weber var. azul. FRONTIERS IN PLANT SCIENCE 2021; 11:608850. [PMID: 33552101 PMCID: PMC7855178 DOI: 10.3389/fpls.2020.608850] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Accepted: 12/28/2020] [Indexed: 05/03/2023]
Abstract
Methodology combining mass spectrometry imaging (MSI) with ion mobility separation (IMS) has emerged as a biological imaging technique due to its versatility, sensitivity and label-free approach. This technique has been shown to separate isomeric compounds such as lipids, amino acids, carboxylic acids and carbohydrates. This report describes mass spectrometry imaging in combination with traveling-wave ion mobility separation and matrix-assisted laser desorption/ionization (MALDI). Positive ionization mode was used to locate fructans on tissue printed sections of Agave rhizome and stem tissue and distinguished fructan isoforms. Here we show the location of fructans ranging from DP3 to DP17 to be differentially abundant across the stem tissue and for the first time, experimental collision cross sections of endogenous fructan structures have been collected, revealing at least two isoforms for fructans of DP4, DP5, DP6, DP7, DP8, DP10, and DP11. This demonstrates that complex fructans such as agavins can be located and their isoforms resolved using a combination of MALDI, IMS, and MSI, without the need for extraction or derivatization. Use of this methodology uncovered patterns of fructan localization consistent with functional differences where higher DP fructans are found toward the central section of the stem supporting a role in long term carbohydrate storage whereas lower DP fructans are concentrated in the highly vascularized central core of rhizomes supporting a role in mobilization of carbohydrates from the mother plant to developing offsets. Tissue specific patterns of expression of genes encoding enzymes involved in fructan metabolism are consistent with fructan structures and localization.
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Affiliation(s)
| | - June Simpson
- Department of Genetic Engineering, CINVESTAV Unidad Irapuato, Irapuato, Mexico
| | - Malcolm R. Clench
- Centre for Mass Spectrometry Imaging, Biomolecular Sciences Research Centre, Sheffield Hallam University, Sheffield, United Kingdom
| | | | - José J. Ordaz-Ortiz
- Metabolomics and Mass Spectrometry Laboratory, National Laboratory of Genomics for Biodiversity, Unidad de Genómica Avanzada (CINVESTAV), Irapuato, Mexico
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15
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Mullin L, Jobst K, DiLorenzo RA, Plumb R, Reiner EJ, Yeung LW, Jogsten IE. Liquid chromatography-ion mobility-high resolution mass spectrometry for analysis of pollutants in indoor dust: Identification and predictive capabilities. Anal Chim Acta 2020; 1125:29-40. [DOI: 10.1016/j.aca.2020.05.052] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2020] [Revised: 05/16/2020] [Accepted: 05/21/2020] [Indexed: 01/01/2023]
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16
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Warnke S, Ben Faleh A, Pellegrinelli RP, Yalovenko N, Rizzo TR. Combining ultra-high resolution ion mobility spectrometry with cryogenic IR spectroscopy for the study of biomolecular ions. Faraday Discuss 2020; 217:114-125. [PMID: 30993271 PMCID: PMC6657637 DOI: 10.1039/c8fd00180d] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
We explore the capability of SLIM-based IMS for isomer selectivity in combination with cryogenic, messenger-tagging IR spectroscopy.
Double-resonance spectroscopic schemes in combination with cryogenic ion traps are the go-to techniques when isomer-specific high-resolution spectra are required for analysis of molecular ions. Their limitation lies in the requirement for well-resolved, isomer-specific absorption bands as well as in the potentially time-consuming steps to identify each isomer. We present an alternative approach where isomeric species are readily separated using ion mobility spectrometry (IMS) and selected prior to cryogenic spectroscopic analysis. To date, most IMS approaches suffer from relatively low resolution, however, recent technological developments in the field of travelling-wave ion mobility using structures for lossless ion manipulation (SLIM) permit the use of extremely long drift paths, which greatly enhances the resolution. We demonstrate the power of combining this type of ultra-high resolution IMS with cryogenic vibrational spectroscopy by comparing mobility-resolved IR spectra of a disaccharide to those acquired using IR–IR double resonance. This new approach is especially promising for the investigation of larger molecules where spectral congestion interferes with double resonance techniques.
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Affiliation(s)
- Stephan Warnke
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland.
| | - Ahmed Ben Faleh
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland.
| | - Robert P Pellegrinelli
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland.
| | - Natalia Yalovenko
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland.
| | - Thomas R Rizzo
- Laboratoire de Chimie Physique Moléculaire, École Polytechnique Fédérale de Lausanne, EPFL SB ISIC LCPM, Station 6, CH-1015 Lausanne, Switzerland.
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17
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Naylor CN, Reinecke T, Clowers BH. Assessing the Impact of Drift Gas Polarizability in Polyatomic Ion Mobility Experiments. Anal Chem 2020; 92:4226-4234. [DOI: 10.1021/acs.analchem.9b04468] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Cameron N. Naylor
- Department of Chemistry, Washington State University, Pullman, Washington 99164, United States
| | - Tobias Reinecke
- Department of Chemistry, Washington State University, Pullman, Washington 99164, United States
| | - Brian H. Clowers
- Department of Chemistry, Washington State University, Pullman, Washington 99164, United States
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18
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Marshall AP, Johnson AR, Vega MM, Thomson RJ, Carlson EE. Ion Mobility Mass Spectrometry as an Efficient Tool for Identification of Streptorubin B in Streptomyces coelicolor M145. JOURNAL OF NATURAL PRODUCTS 2020; 83:159-163. [PMID: 31904955 PMCID: PMC7045693 DOI: 10.1021/acs.jnatprod.9b00828] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Ion mobility spectrometry was utilized to corroborate the identity of streptorubin B (2) as the natural product produced by Streptomyces coelicolor. Natural product 2 was initially assigned as butylcycloheptylprodigiosin (3), and only relatively recently was this assignment clarified. We present additional evidence of this assignment by comparing collisional cross sections (Ω) of synthetic standards of 2, 3, and metacycloprodigiosin (4) to the cyclic prodiginine produced by S. coelicolor. Calculated theoretical Ω values demonstrate that cyclic prodiginines could be identified without standards. This work highlights ion mobility as an efficient tool for the dereplication of natural products.
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Affiliation(s)
- Andrew P. Marshall
- Department of Chemistry, Molecular Biology and Biophysics, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
| | - Andrew R. Johnson
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
| | - Marvin M. Vega
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Regan J. Thomson
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Erin E. Carlson
- Department of Chemistry, Molecular Biology and Biophysics, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
- Department of Medicinal Chemistry, Molecular Biology and Biophysics, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
- Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota-Twin Cities, Minneapolis, Minnesota 55455, United States
- Department of Chemistry, Indiana University, Bloomington, Indiana 47405, United States
- Corresponding Author:
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19
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Boufroura H, Plais R, Poyer S, Gaucher A, Marrot J, Clavier G, Legrand FX, Huin C, Guégan P, Prim D, Salpin JY. Helically shaped cation receptor: design, synthesis, characterisation and first application to ion transport. RSC Adv 2020; 10:31670-31679. [PMID: 35520653 PMCID: PMC9056421 DOI: 10.1039/d0ra05519k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2020] [Accepted: 07/30/2020] [Indexed: 12/22/2022] Open
Abstract
An helicene-like receptor is able to transport K+ across lipid membrane.
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Affiliation(s)
- Hamza Boufroura
- Université Paris-Saclay
- UVSQ
- CNRS
- UMR 8180
- Institut Lavoisier de Versailles
| | - Romain Plais
- Université Paris-Saclay
- UVSQ
- CNRS
- UMR 8180
- Institut Lavoisier de Versailles
| | | | - Anne Gaucher
- Université Paris-Saclay
- UVSQ
- CNRS
- UMR 8180
- Institut Lavoisier de Versailles
| | - Jérome Marrot
- Université Paris-Saclay
- UVSQ
- CNRS
- UMR 8180
- Institut Lavoisier de Versailles
| | | | | | - Cécile Huin
- Sorbonne Université
- CNRS
- Institut Parisien de Chimie Moléculaire
- Equipe Chimie des Polymères
- 75005 Paris
| | - Philippe Guégan
- Sorbonne Université
- CNRS
- Institut Parisien de Chimie Moléculaire
- Equipe Chimie des Polymères
- 75005 Paris
| | - Damien Prim
- Université Paris-Saclay
- UVSQ
- CNRS
- UMR 8180
- Institut Lavoisier de Versailles
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20
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Vera P, Canellas E, Barknowitz G, Goshawk J, Nerín C. Ion-Mobility Quadrupole Time-of-Flight Mass Spectrometry: A Novel Technique Applied to Migration of Nonintentionally Added Substances from Polyethylene Films Intended for Use as Food Packaging. Anal Chem 2019; 91:12741-12751. [DOI: 10.1021/acs.analchem.9b02238] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Paula Vera
- Analytical Chemistry Department, GUIA Group, I3A, University of Zaragoza, Ma de Luna 3, 50018 Zaragoza, Spain
| | - Elena Canellas
- Samtack Adhesivos Industriales, C/Cerámica,
no. 3, Pol. Magarola, 08292 Esparreguera, Barcelona, Spain
| | | | - Jeff Goshawk
- Waters Corporation, Wilmslow SK9 4AX, United Kingdom
| | - Cristina Nerín
- Analytical Chemistry Department, GUIA Group, I3A, University of Zaragoza, Ma de Luna 3, 50018 Zaragoza, Spain
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21
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Colby SM, Thomas DG, Nuñez JR, Baxter DJ, Glaesemann KR, Brown JM, Pirrung MA, Govind N, Teeguarden JG, Metz TO, Renslow RS. ISiCLE: A Quantum Chemistry Pipeline for Establishing in Silico Collision Cross Section Libraries. Anal Chem 2019; 91:4346-4356. [PMID: 30741529 PMCID: PMC6526953 DOI: 10.1021/acs.analchem.8b04567] [Citation(s) in RCA: 68] [Impact Index Per Article: 13.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
High-throughput, comprehensive, and confident identifications of metabolites and other chemicals in biological and environmental samples will revolutionize our understanding of the role these chemically diverse molecules play in biological systems. Despite recent technological advances, metabolomics studies still result in the detection of a disproportionate number of features that cannot be confidently assigned to a chemical structure. This inadequacy is driven by the single most significant limitation in metabolomics, the reliance on reference libraries constructed by analysis of authentic reference materials with limited commercial availability. To this end, we have developed the in silico chemical library engine (ISiCLE), a high-performance computing-friendly cheminformatics workflow for generating libraries of chemical properties. In the instantiation described here, we predict probable three-dimensional molecular conformers (i.e., conformational isomers) using chemical identifiers as input, from which collision cross sections (CCS) are derived. The approach employs first-principles simulation, distinguished by the use of molecular dynamics, quantum chemistry, and ion mobility calculations, to generate structures and chemical property libraries, all without training data. Importantly, optimization of ISiCLE included a refactoring of the popular MOBCAL code for trajectory-based mobility calculations, improving its computational efficiency by over 2 orders of magnitude. Calculated CCS values were validated against 1983 experimentally measured CCS values and compared to previously reported CCS calculation approaches. Average calculated CCS error for the validation set is 3.2% using standard parameters, outperforming other density functional theory (DFT)-based methods and machine learning methods (e.g., MetCCS). An online database is introduced for sharing both calculated and experimental CCS values ( metabolomics.pnnl.gov ), initially including a CCS library with over 1 million entries. Finally, three successful applications of molecule characterization using calculated CCS are described, including providing evidence for the presence of an environmental degradation product, the separation of molecular isomers, and an initial characterization of complex blinded mixtures of exposure chemicals. This work represents a method to address the limitations of small molecule identification and offers an alternative to generating chemical identification libraries experimentally by analyzing authentic reference materials. All code is available at github.com/pnnl .
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Affiliation(s)
- Sean M. Colby
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Dennis G. Thomas
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Jamie R. Nuñez
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Douglas J. Baxter
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Kurt R. Glaesemann
- Communications and Information Technology Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Joseph M. Brown
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Meg A. Pirrung
- National Security Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Niranjan Govind
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Justin G. Teeguarden
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
- Department of Environmental and Molecular Toxicology, Oregon State University, Corvallis, Oregon 97331, United States
| | - Thomas O. Metz
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
| | - Ryan S. Renslow
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
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22
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Paul M, Detmar E, Schlangen M, Breugst M, Neudörfl JM, Schwarz H, Berkessel A, Schäfer M. Intermediates of N-Heterocyclic Carbene (NHC) Dimerization Probed in the Gas Phase by Ion Mobility Mass Spectrometry: C-H⋅⋅⋅:C Hydrogen Bonding Versus Covalent Dimer Formation. Chemistry 2019; 25:2511-2518. [PMID: 30488654 DOI: 10.1002/chem.201803641] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Revised: 11/27/2018] [Indexed: 11/06/2022]
Abstract
N-Heterocyclic carbenes (NHCs, :C) can interact with azolium salts (C-H+ ) by either forming a hydrogen-bonded aggregate (CHC+ ) or a covalent C-C bond (CCH+ ). In this study, the intramolecular NHC-azolium salt interactions of aromatic imidazolin-2-ylidenes and saturated imidazolidin-2-ylidenes have been investigated in the gas phase by traveling wave ion mobility mass spectrometry (TW IMS) and DFT calculations. The TW IMS experiments provided evidence for the formation of these important intermediates in the gas phase, and they identified the predominant aggregation mode (hydrogen bond vs. covalent C-C) as a function of the nature of the interacting carbene-azolium pairs.
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Affiliation(s)
- Mathias Paul
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Eric Detmar
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Maria Schlangen
- Institute of Chemistry, Technical University Berlin, Straße des 17. Juni 115, 10623, Berlin, Germany
| | - Martin Breugst
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Jörg-Martin Neudörfl
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Helmut Schwarz
- Institute of Chemistry, Technical University Berlin, Straße des 17. Juni 115, 10623, Berlin, Germany
| | - Albrecht Berkessel
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
| | - Mathias Schäfer
- Department of Chemistry, Organic Chemistry, University of Cologne, Greinstrasse 4, 50939, Cologne, Germany
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23
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Ieritano C, Crouse J, Campbell JL, Hopkins WS. A parallelized molecular collision cross section package with optimized accuracy and efficiency. Analyst 2019; 144:1660-1670. [PMID: 30649115 DOI: 10.1039/c8an02150c] [Citation(s) in RCA: 43] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A new parallelized calculation package predicts collision cross sections with high accuracy and efficiency.
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Affiliation(s)
- Christian Ieritano
- Department of Chemistry
- University of Waterloo
- 200 University Avenue West
- Waterloo
- Canada
| | - Jeff Crouse
- Department of Chemistry
- University of Waterloo
- 200 University Avenue West
- Waterloo
- Canada
| | - J. Larry Campbell
- Department of Chemistry
- University of Waterloo
- 200 University Avenue West
- Waterloo
- Canada
| | - W. Scott Hopkins
- Department of Chemistry
- University of Waterloo
- 200 University Avenue West
- Waterloo
- Canada
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24
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Lim D, Davidson KL, Son S, Ahmed A, Bush MF, Kim S. Determining Collision Cross‐Sections of Aromatic Compounds in Crude Oil by Using Aromatic Compound Mixture as Calibration Standard. B KOREAN CHEM SOC 2018. [DOI: 10.1002/bkcs.11653] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Dongwan Lim
- Department of ChemistryKyungpook National University Daegu 41566 Republic of Korea
| | | | - Seungwoo Son
- Department of ChemistryKyungpook National University Daegu 41566 Republic of Korea
| | - Arif Ahmed
- Department of ChemistryKyungpook National University Daegu 41566 Republic of Korea
| | - Matthew F. Bush
- Department of ChemistryUniversity of Washington Seattle WA, 98195‐1700 USA
| | - Sunghwan Kim
- Department of ChemistryKyungpook National University Daegu 41566 Republic of Korea
- Green‐Nano Materials Research Center Daegu 41566 Republic of Korea
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25
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Blaženović I, Kind T, Ji J, Fiehn O. Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics. Metabolites 2018; 8:E31. [PMID: 29748461 PMCID: PMC6027441 DOI: 10.3390/metabo8020031] [Citation(s) in RCA: 392] [Impact Index Per Article: 65.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2018] [Revised: 04/26/2018] [Accepted: 05/06/2018] [Indexed: 01/17/2023] Open
Abstract
The annotation of small molecules remains a major challenge in untargeted mass spectrometry-based metabolomics. We here critically discuss structured elucidation approaches and software that are designed to help during the annotation of unknown compounds. Only by elucidating unknown metabolites first is it possible to biologically interpret complex systems, to map compounds to pathways and to create reliable predictive metabolic models for translational and clinical research. These strategies include the construction and quality of tandem mass spectral databases such as the coalition of MassBank repositories and investigations of MS/MS matching confidence. We present in silico fragmentation tools such as MS-FINDER, CFM-ID, MetFrag, ChemDistiller and CSI:FingerID that can annotate compounds from existing structure databases and that have been used in the CASMI (critical assessment of small molecule identification) contests. Furthermore, the use of retention time models from liquid chromatography and the utility of collision cross-section modelling from ion mobility experiments are covered. Workflows and published examples of successfully annotated unknown compounds are included.
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Affiliation(s)
- Ivana Blaženović
- NIH West Coast Metabolomics Center, UC Davis Genome Center, University of California, Davis, CA 95616, USA.
| | - Tobias Kind
- NIH West Coast Metabolomics Center, UC Davis Genome Center, University of California, Davis, CA 95616, USA.
| | - Jian Ji
- State Key Laboratory of Food Science and Technology, School of Food Science of Jiangnan University, School of Food Science Synergetic Innovation Center of Food Safety and Nutrition, Wuxi 214122, China.
| | - Oliver Fiehn
- NIH West Coast Metabolomics Center, UC Davis Genome Center, University of California, Davis, CA 95616, USA.
- Department of Biochemistry, Faculty of Sciences, King Abdulaziz University, Jeddah 21589, Saudi Arabia.
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26
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Mehmood A, Janesko BG. Predicting ion mobility collision cross sections directly from standard quantum chemistry software. JOURNAL OF MASS SPECTROMETRY : JMS 2018; 53:432-434. [PMID: 29505693 DOI: 10.1002/jms.4078] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2017] [Revised: 02/23/2018] [Accepted: 02/26/2018] [Indexed: 06/08/2023]
Abstract
A method is proposed to predict ions' collision cross-sectional area from properties that are already evaluated in standard quantum chemistry software. Computed molecular isodensity surface areas recover the predictions of existing projection approximations. Computed solvent cavity areas give comparable accuracy. This provides a simplified workflow for assigning ion-mobility mass spectra.
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Affiliation(s)
- Arshad Mehmood
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX, 76129, USA
| | - Benjamin G Janesko
- Department of Chemistry and Biochemistry, Texas Christian University, Fort Worth, TX, 76129, USA
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27
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Mollerup CB, Mardal M, Dalsgaard PW, Linnet K, Barron LP. Prediction of collision cross section and retention time for broad scope screening in gradient reversed-phase liquid chromatography-ion mobility-high resolution accurate mass spectrometry. J Chromatogr A 2018; 1542:82-88. [DOI: 10.1016/j.chroma.2018.02.025] [Citation(s) in RCA: 51] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2017] [Revised: 02/06/2018] [Accepted: 02/14/2018] [Indexed: 12/15/2022]
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28
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Wu T, Derrick J, Nahin M, Chen X, Larriba-Andaluz C. Optimization of long range potential interaction parameters in ion mobility spectrometry. J Chem Phys 2018; 148:074102. [DOI: 10.1063/1.5016170] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- Tianyang Wu
- Mechanical Engineering, Indiana University-Purdue University Indianapolis, 723 W Michigan St., Indianapolis, Indiana 46202, USA
| | - Joseph Derrick
- Mechanical Engineering, Indiana University-Purdue University Indianapolis, 723 W Michigan St., Indianapolis, Indiana 46202, USA
| | - Minal Nahin
- Mechanical Engineering, Indiana University-Purdue University Indianapolis, 723 W Michigan St., Indianapolis, Indiana 46202, USA
| | - Xi Chen
- Mechanical Engineering, Indiana University-Purdue University Indianapolis, 723 W Michigan St., Indianapolis, Indiana 46202, USA
- Mechanical Engineering, Purdue University, 585 Purdue Mall, West Lafayette, Indiana 47907, USA
| | - Carlos Larriba-Andaluz
- Mechanical Engineering, Indiana University-Purdue University Indianapolis, 723 W Michigan St., Indianapolis, Indiana 46202, USA
- Integrated Nanosystems Development Institute (INDI), 420 University Blvd., Indianapolis, Indiana 46202, USA
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29
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Lee JW, Lee HHL, Davidson KL, Bush MF, Kim HI. Structural characterization of small molecular ions by ion mobility mass spectrometry in nitrogen drift gas: improving the accuracy of trajectory method calculations. Analyst 2018; 143:1786-1796. [DOI: 10.1039/c8an00270c] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
An accurate theoretical collision cross section calculation method in nitrogen was developed for reliable structural ion mobility mass spectrometry.
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Affiliation(s)
- Jong Wha Lee
- Center for Analytical Chemistry
- Division of Chemical and Medical Metrology
- Korea Research Institute of Standards and Science (KRISS)
- Daejeon 34113
- Republic of Korea
| | - Hyun Hee L. Lee
- Department of Chemistry
- Korea University
- Seoul 02841
- Republic of Korea
| | | | | | - Hugh I. Kim
- Department of Chemistry
- Korea University
- Seoul 02841
- Republic of Korea
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30
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Improving the discovery of secondary metabolite natural products using ion mobility-mass spectrometry. Curr Opin Chem Biol 2017; 42:160-166. [PMID: 29287234 DOI: 10.1016/j.cbpa.2017.12.004] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2017] [Revised: 11/30/2017] [Accepted: 12/11/2017] [Indexed: 02/07/2023]
Abstract
Secondary metabolite discovery requires an unbiased, comprehensive workflow to detect unknown unknowns for which little to no molecular knowledge exists. Untargeted mass spectrometry-based metabolomics is a powerful platform, particularly when coupled with ion mobility for high-throughput gas-phase separations to increase peak capacity and obtain gas-phase structural information. Ion mobility data are described by the amount of time an ion spends in the drift cell, which is directly related to an ion's collision cross section (CCS). The CCS parameter describes the size, shape, and charge of a molecule and can be used to characterize unknown metabolomic species. Here, we describe current and emerging applications of ion mobility-mass spectrometry for prioritization, discovery and structure elucidation, and spatial/temporal characterization.
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31
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Righetti L, Fenclova M, Dellafiora L, Hajslova J, Stranska-Zachariasova M, Dall'Asta C. High resolution-ion mobility mass spectrometry as an additional powerful tool for structural characterization of mycotoxin metabolites. Food Chem 2017; 245:768-774. [PMID: 29287439 DOI: 10.1016/j.foodchem.2017.11.113] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2017] [Revised: 11/24/2017] [Accepted: 11/29/2017] [Indexed: 11/27/2022]
Abstract
This work was designed as a proof of concept, to demonstrate the successful use of the comparison between theoretical and experimental collision cross section (CCS) values to support the identification of isomeric forms. To this purpose, thirteen mycotoxins were considered and analyzed using drift time ion mobility mass spectrometry. A good linear correlation (r2 = 0.962) between theoretical and experimental CCS was found. The average ΔCCS was 3.2%, fully consistent with the acceptability threshold value commonly set at 5%. The agreement between theoretical and experimental CCS obtained for mycotoxin glucuronides suggested the potential of the CCS matching in supporting the annotation procedure.
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Affiliation(s)
- Laura Righetti
- Department of Food Analysis and Nutrition, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Technicka 3, 166 28 Prague 6, Czech Republic; Department of Food and Drug, University of Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy
| | - Marie Fenclova
- Department of Food Analysis and Nutrition, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Technicka 3, 166 28 Prague 6, Czech Republic
| | - Luca Dellafiora
- Department of Food and Drug, University of Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy
| | - Jana Hajslova
- Department of Food Analysis and Nutrition, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Technicka 3, 166 28 Prague 6, Czech Republic
| | - Milena Stranska-Zachariasova
- Department of Food Analysis and Nutrition, Faculty of Food and Biochemical Technology, University of Chemistry and Technology, Prague, Technicka 3, 166 28 Prague 6, Czech Republic.
| | - Chiara Dall'Asta
- Department of Food and Drug, University of Parma, Parco Area delle Scienze 17/A, 43124 Parma, Italy
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32
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Chalet C, Hollebrands B, Janssen HG, Augustijns P, Duchateau G. Identification of phase-II metabolites of flavonoids by liquid chromatography–ion-mobility spectrometry–mass spectrometry. Anal Bioanal Chem 2017; 410:471-482. [DOI: 10.1007/s00216-017-0737-4] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Revised: 10/18/2017] [Accepted: 10/30/2017] [Indexed: 10/18/2022]
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33
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The potential of ion mobility-mass spectrometry for non-targeted metabolomics. Curr Opin Chem Biol 2017; 42:9-15. [PMID: 29107931 DOI: 10.1016/j.cbpa.2017.10.015] [Citation(s) in RCA: 81] [Impact Index Per Article: 11.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Revised: 10/10/2017] [Accepted: 10/12/2017] [Indexed: 12/31/2022]
Abstract
Non-targeted analysis of metabolites in hypothesis-generating workflows has proven its potential to answer essential questions that arise when dealing with complex biological systems. Nevertheless, tracking changes in perturbed systems via accurate quantification and the identification process itself represent the most critical challenges in these workflows. Recent advances in ion mobility-mass spectrometry have enabled this technique to increase the confidence of metabolite annotation by introducing a complementary conditional molecular descriptor, that is collision cross section.
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34
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Bijlsma L, Bade R, Celma A, Mullin L, Cleland G, Stead S, Hernandez F, Sancho JV. Prediction of Collision Cross-Section Values for Small Molecules: Application to Pesticide Residue Analysis. Anal Chem 2017; 89:6583-6589. [DOI: 10.1021/acs.analchem.7b00741] [Citation(s) in RCA: 72] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Lubertus Bijlsma
- Research
Institute for Pesticides and Water, University Jaume I, Avda. Sos Baynat
s/n, E-12071 Castellón, Spain
| | - Richard Bade
- Research
Institute for Pesticides and Water, University Jaume I, Avda. Sos Baynat
s/n, E-12071 Castellón, Spain
- School
of Pharmacy and Medical Sciences, University of South Australia, Adelaide, South Australia 5000, Australia
| | - Alberto Celma
- Research
Institute for Pesticides and Water, University Jaume I, Avda. Sos Baynat
s/n, E-12071 Castellón, Spain
| | - Lauren Mullin
- Waters Corporation, 34 Maple Street, Milford, Massachusetts 01757, United States
| | - Gareth Cleland
- Waters Corporation, 34 Maple Street, Milford, Massachusetts 01757, United States
| | - Sara Stead
- Waters Corporation, 34 Maple Street, Milford, Massachusetts 01757, United States
| | - Felix Hernandez
- Research
Institute for Pesticides and Water, University Jaume I, Avda. Sos Baynat
s/n, E-12071 Castellón, Spain
| | - Juan V. Sancho
- Research
Institute for Pesticides and Water, University Jaume I, Avda. Sos Baynat
s/n, E-12071 Castellón, Spain
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35
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Zhang X, Kew K, Reisdorph R, Sartain M, Powell R, Armstrong M, Quinn K, Cruickshank-Quinn C, Walmsley S, Bokatzian S, Darland E, Rain M, Imatani K, Reisdorph N. Performance of a High-Pressure Liquid Chromatography-Ion Mobility-Mass Spectrometry System for Metabolic Profiling. Anal Chem 2017; 89:6384-6391. [PMID: 28528542 DOI: 10.1021/acs.analchem.6b04628] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
A commercial liquid chromatography/drift tube ion mobility-mass spectrometer (LC/IM-MS) was evaluated for its utility in global metabolomics analysis. Performance was assessed using 12 targeted metabolite standards where the limit of detection (LOD), linear dynamic range, resolving power, and collision cross section (Ω) are reported for each standard. Data were collected in three different instrument operation modes: flow injection analysis with IM-MS (FIA/IM-MS), LC/MS, and LC/IM-MS. Metabolomics analyses of human plasma and HaCaT cells were used to compare the above three operation modes. LC/MS provides linearity in response, data processing automation, improved limits of detection, and ease of use. Advantages of LC/IM-MS and FIA/IM-MS include the ability to develop mobility-mass trend lines for structurally similar biomolecules, increased peak capacity, reduction of chemical/matrix noise, improvement in signal-to-noise, and separations of isobar/isomer compounds that are not resolved by LC. We further tested the feasibility of incorporating IM-MS into conventional LC/MS metabolomics workflows. In general, the addition of ion mobility dimension has increased the separation of compounds in complex biological matrixes and has the potential to largely improve the throughput of metabolomics analysis.
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Affiliation(s)
- Xing Zhang
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Kimberly Kew
- Department of Chemistry, East Carolina University , Greenville, North Carolina 27858, United States
| | - Richard Reisdorph
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Mark Sartain
- Life Sciences Group, Agilent Technologies , Santa Clara, California 95051, United States
| | - Roger Powell
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Michael Armstrong
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Kevin Quinn
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Charmion Cruickshank-Quinn
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Scott Walmsley
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Samantha Bokatzian
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
| | - Ed Darland
- Life Sciences Group, Agilent Technologies , Santa Clara, California 95051, United States
| | - Matthew Rain
- Life Sciences Group, Agilent Technologies , Santa Clara, California 95051, United States
| | - Ken Imatani
- Life Sciences Group, Agilent Technologies , Santa Clara, California 95051, United States
| | - Nichole Reisdorph
- Skaggs School of Pharmacy and Pharmaceutical Sciences, University of Colorado Denver, Anschutz Medical Campus , Aurora, Colorado 80045, United States
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36
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Young MN, Bleiholder C. Molecular Structures and Momentum Transfer Cross Sections: The Influence of the Analyte Charge Distribution. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2017; 28:619-627. [PMID: 28251573 DOI: 10.1007/s13361-017-1605-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/04/2016] [Revised: 12/19/2016] [Accepted: 12/20/2016] [Indexed: 06/06/2023]
Abstract
Structure elucidation by ion mobility spectrometry-mass spectrometry methods is based on the comparison of an experimentally measured momentum transfer cross-section to cross-sections calculated for model structures. Thus, it is imperative that the calculated cross-section must be accurate. However, it is not fully understood how important it is to accurately model the charge distribution of an analyte ion when calculating momentum transfer cross-sections. Here, we calculate and compare momentum transfer cross-sections for carbon clusters that differ in mass, charge state, and mode of charge distribution, and vary temperature and polarizability of the buffer gas. Our data indicate that the detailed distribution of the ion charge density is intimately linked to the contribution of glancing collisions to the momentum transfer cross-section. The data suggest that analyte ions with molecular mass ~3 kDa or momentum transfer cross-section 400-500 Å2 would be significantly influenced by the charge distribution in nitrogen buffer gas. Our data further suggest that accurate structure elucidation on the basis of IMS-MS data measured in nitrogen buffer gas must account for the molecular charge distribution even for systems as large as C960 (~12 kDa) when localized charges are present and/or measurements are conducted under cryogenic temperatures. Finally, our data underscore that accurate structure elucidation is unlikely if ion mobility data recorded in one buffer gas is converted into other buffer gases when electronic properties of the buffer gases differ. Graphical Abstract ᅟ.
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Affiliation(s)
- Meggie N Young
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA
| | - Christian Bleiholder
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, FL, 32306, USA.
- Institute of Molecular Biophysics, Florida State University, Tallahassee, FL, 32306, USA.
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37
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Abstract
In this review, we focus on an important aspect of ion mobility (IM) research, namely the reporting of quantitative ion mobility measurements in the form of the gas-phase collision cross section (CCS), which has provided a common basis for comparison across different instrument platforms and offers a unique form of structural information, namely size and shape preferences of analytes in the absence of bulk solvent. This review surveys the over 24,000 CCS values reported from IM methods spanning the era between 1975 to 2015, which provides both a historical and analytical context for the contributions made thus far, as well as insight into the future directions that quantitative ion mobility measurements will have in the analytical sciences. The analysis was conducted in 2016, so CCS values reported in that year are purposely omitted. In another few years, a review of this scope will be intractable, as the number of CCS values which will be reported in the next three to five years is expected to exceed the total amount currently published in the literature.
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Affiliation(s)
- Jody C May
- Department of Chemistry, Center for Innovative Technology, Vanderbilt Institute for Chemical Biology, Vanderbilt Institute for Integrative Biosystems Research and Education, Vanderbilt University , Nashville, Tennessee 37235, United States
| | - Caleb B Morris
- Department of Chemistry, Center for Innovative Technology, Vanderbilt Institute for Chemical Biology, Vanderbilt Institute for Integrative Biosystems Research and Education, Vanderbilt University , Nashville, Tennessee 37235, United States
| | - John A McLean
- Department of Chemistry, Center for Innovative Technology, Vanderbilt Institute for Chemical Biology, Vanderbilt Institute for Integrative Biosystems Research and Education, Vanderbilt University , Nashville, Tennessee 37235, United States
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38
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Kune C, Far J, De Pauw E. Accurate Drift Time Determination by Traveling Wave Ion Mobility Spectrometry: The Concept of the Diffusion Calibration. Anal Chem 2016; 88:11639-11646. [PMID: 27934120 DOI: 10.1021/acs.analchem.6b03215] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Ion mobility spectrometry (IMS) is a gas phase separation technique, which relies on differences in collision cross section (CCS) of ions. Ionic clouds of unresolved conformers overlap if the CCS difference is below the instrumental resolution expressed as CCS/ΔCCS. The experimental arrival time distribution (ATD) peak is then a superimposition of the various contributions weighted by their relative intensities. This paper introduces a strategy for accurate drift time determination using traveling wave ion mobility spectrometry (TWIMS) of poorly resolved or unresolved conformers. This method implements through a calibration procedure the link between the peak full width at half-maximum (fwhm) and the drift time of model compounds for wide range of settings for wave heights and velocities. We modified a Gaussian equation, which achieves the deconvolution of ATD peaks where the fwhm is fixed according to our calibration procedure. The new fitting Gaussian equation only depends on two parameters: The apex of the peak (A) and the mean drift time value (μ). The standard deviation parameter (correlated to fwhm) becomes a function of the drift time. This correlation function between μ and fwhm is obtained using the TWIMS calibration procedure which determines the maximum instrumental ion beam diffusion under limited and controlled space charge effect using ionic compounds which are detected as single conformers in the gas phase. This deconvolution process has been used to highlight the presence of poorly resolved conformers of crown ether complexes and peptides leading to more accurate CCS determinations in better agreement with quantum chemistry predictions.
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Affiliation(s)
- Christopher Kune
- Laboratory of Mass Spectrometry, University of Liege , Quartier Agora, Allée du Six Aout 11, B-4000, Liege, Belgium
| | - Johann Far
- Laboratory of Mass Spectrometry, University of Liege , Quartier Agora, Allée du Six Aout 11, B-4000, Liege, Belgium
| | - Edwin De Pauw
- Laboratory of Mass Spectrometry, University of Liege , Quartier Agora, Allée du Six Aout 11, B-4000, Liege, Belgium
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39
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Zhou Z, Shen X, Tu J, Zhu ZJ. Large-Scale Prediction of Collision Cross-Section Values for Metabolites in Ion Mobility-Mass Spectrometry. Anal Chem 2016; 88:11084-11091. [DOI: 10.1021/acs.analchem.6b03091] [Citation(s) in RCA: 133] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Zhiwei Zhou
- Interdisciplinary
Research
Center on Biology and Chemistry and Shanghai
Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032 P. R. China
| | - Xiaotao Shen
- Interdisciplinary
Research
Center on Biology and Chemistry and Shanghai
Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032 P. R. China
| | - Jia Tu
- Interdisciplinary
Research
Center on Biology and Chemistry and Shanghai
Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032 P. R. China
| | - Zheng-Jiang Zhu
- Interdisciplinary
Research
Center on Biology and Chemistry and Shanghai
Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai, 200032 P. R. China
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40
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Ortmayr K, Causon TJ, Hann S, Koellensperger G. Increasing selectivity and coverage in LC-MS based metabolome analysis. Trends Analyt Chem 2016. [DOI: 10.1016/j.trac.2016.06.011] [Citation(s) in RCA: 55] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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41
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Gonzales GB, Smagghe G, Coelus S, Adriaenssens D, De Winter K, Desmet T, Raes K, Van Camp J. Collision cross section prediction of deprotonated phenolics in a travelling-wave ion mobility spectrometer using molecular descriptors and chemometrics. Anal Chim Acta 2016; 924:68-76. [DOI: 10.1016/j.aca.2016.04.020] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Revised: 03/29/2016] [Accepted: 04/15/2016] [Indexed: 02/02/2023]
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42
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Reading E, Munoz-Muriedas J, Roberts AD, Dear GJ, Robinson CV, Beaumont C. Elucidation of Drug Metabolite Structural Isomers Using Molecular Modeling Coupled with Ion Mobility Mass Spectrometry. Anal Chem 2016; 88:2273-80. [DOI: 10.1021/acs.analchem.5b04068] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Eamonn Reading
- Department
of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, U.K
| | - Jordi Munoz-Muriedas
- Chemical
Sciences, Computational Chemistry, GlaxoSmithKline, Stevenage, Hertfordshire SG1 2NY, U.K
| | - Andrew D. Roberts
- Drug
Metabolism and Pharmacokinetics, GlaxoSmithKline, Ware, Hertfordshire SG12 0DP, U.K
| | - Gordon J. Dear
- Drug
Metabolism and Pharmacokinetics, GlaxoSmithKline, Ware, Hertfordshire SG12 0DP, U.K
| | - Carol V. Robinson
- Department
of Chemistry, Physical and Theoretical Chemistry Laboratory, University of Oxford, Oxford OX1 3QZ, U.K
| | - Claire Beaumont
- Drug
Metabolism and Pharmacokinetics, GlaxoSmithKline, Ware, Hertfordshire SG12 0DP, U.K
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43
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Boschmans J, Jacobs S, Williams JP, Palmer M, Richardson K, Giles K, Lapthorn C, Herrebout WA, Lemière F, Sobott F. Combining density functional theory (DFT) and collision cross-section (CCS) calculations to analyze the gas-phase behaviour of small molecules and their protonation site isomers. Analyst 2016; 141:4044-54. [DOI: 10.1039/c5an02456k] [Citation(s) in RCA: 64] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Computational methods are employed to study the protomers in ESI-IM-MS.
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Affiliation(s)
- Jasper Boschmans
- Biomolecular & Analytical Mass Spectrometry group
- Department of Chemistry
- University of Antwerp
- Antwerp
- Belgium
| | - Sam Jacobs
- Molecular Spectroscopy group
- Department of Chemistry
- University of Antwerp
- Antwerp
- Belgium
| | | | | | | | | | - Cris Lapthorn
- Faculty of Engineering & Science
- University of Greenwich
- Chatham
- UK
| | - Wouter A. Herrebout
- Molecular Spectroscopy group
- Department of Chemistry
- University of Antwerp
- Antwerp
- Belgium
| | - Filip Lemière
- Biomolecular & Analytical Mass Spectrometry group
- Department of Chemistry
- University of Antwerp
- Antwerp
- Belgium
| | - Frank Sobott
- Biomolecular & Analytical Mass Spectrometry group
- Department of Chemistry
- University of Antwerp
- Antwerp
- Belgium
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44
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Gunzer F. Comparison of Experimental and Calculated Ion Mobilities of Small Molecules in Air. JOURNAL OF ANALYTICAL METHODS IN CHEMISTRY 2016; 2016:6246415. [PMID: 27298751 PMCID: PMC4889856 DOI: 10.1155/2016/6246415] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2016] [Accepted: 05/05/2016] [Indexed: 05/06/2023]
Abstract
Ion mobility spectrometry is a well-known technique for analyzing gases. Examples are military applications, but also safety related applications, for example, for protection of employees in industries working with hazardous gases. In the last 15 years, this technique has been further developed as a tool for structural analysis, for example, in pharmaceutical applications. In particular, the collision cross section, which is related to the mobility, is of interest here. With help of theoretic principles, it is possible to develop molecular models that can be verified by the comparison of their calculated cross sections with experimental data. In this paper, it is analyzed how well the ion trajectory method is suitable to reproduce the measured ion mobility of small organic molecules such as the water clusters forming the positively charged reactant ions, simple aromatic substances, and n-alkanes.
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Affiliation(s)
- Frank Gunzer
- Information Engineering and Technology Faculty, German University in Cairo, El Tagamoa El Khames, Cairo, Egypt
- *Frank Gunzer:
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45
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Thevis M, Dib J, Thomas A, Höppner S, Lagojda A, Kuehne D, Sander M, Opfermann G, Schänzer W. Complementing the characterization ofin vivogeneratedN-glucuronic acid conjugates of stanozolol by collision cross section computation and analysis. Drug Test Anal 2015; 7:1050-6. [DOI: 10.1002/dta.1907] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2015] [Revised: 09/25/2015] [Accepted: 09/25/2015] [Indexed: 02/06/2023]
Affiliation(s)
- Mario Thevis
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
- European Monitoring Center for Emerging Doping Agents (EuMoCEDA); Cologne/Bonn Germany
| | - Josef Dib
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
| | - Andreas Thomas
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
| | - Sebastian Höppner
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
| | - Andreas Lagojda
- Bayer CropScience AG; Alfred-Nobel-Str. 50 40789 Monheim Germany
| | - Dirk Kuehne
- Bayer CropScience AG; Alfred-Nobel-Str. 50 40789 Monheim Germany
| | - Mark Sander
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
| | - Georg Opfermann
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
| | - Wilhelm Schänzer
- Center for Preventive Doping Research - Institute of Biochemistry; German Sport University Cologne; Am Sportpark Müngersdorf 6 50933 Cologne Germany
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