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For: Long AW, Zhang J, Granick S, Ferguson AL. Machine learning assembly landscapes from particle tracking data. Soft Matter 2015;11:8141-8153. [PMID: 26338295 DOI: 10.1039/c5sm01981h] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Number Cited by Other Article(s)
1
Bassani CL, van Anders G, Banin U, Baranov D, Chen Q, Dijkstra M, Dimitriyev MS, Efrati E, Faraudo J, Gang O, Gaston N, Golestanian R, Guerrero-Garcia GI, Gruenwald M, Haji-Akbari A, Ibáñez M, Karg M, Kraus T, Lee B, Van Lehn RC, Macfarlane RJ, Mognetti BM, Nikoubashman A, Osat S, Prezhdo OV, Rotskoff GM, Saiz L, Shi AC, Skrabalak S, Smalyukh II, Tagliazucchi M, Talapin DV, Tkachenko AV, Tretiak S, Vaknin D, Widmer-Cooper A, Wong GCL, Ye X, Zhou S, Rabani E, Engel M, Travesset A. Nanocrystal Assemblies: Current Advances and Open Problems. ACS NANO 2024;18:14791-14840. [PMID: 38814908 DOI: 10.1021/acsnano.3c10201] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
2
Lizano A, Tang X. Convolutional neural network-based colloidal self-assembly state classification. SOFT MATTER 2023;19:3450-3457. [PMID: 37129254 DOI: 10.1039/d3sm00139c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
3
Altman LE, Grier DG. Machine learning enables precise holographic characterization of colloidal materials in real time. SOFT MATTER 2023;19:3002-3014. [PMID: 37017639 DOI: 10.1039/d2sm01283a] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
4
McDonald MN, Zhu Q, Paxton WF, Peterson CK, Tree DR. Active control of equilibrium, near-equilibrium, and far-from-equilibrium colloidal systems. SOFT MATTER 2023;19:1675-1694. [PMID: 36790855 DOI: 10.1039/d2sm01447e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
5
Mao R, O’Leary J, Mesbah A, Mittal J. A Deep Learning Framework Discovers Compositional Order and Self-Assembly Pathways in Binary Colloidal Mixtures. JACS AU 2022;2:1818-1828. [PMID: 36032540 PMCID: PMC9400045 DOI: 10.1021/jacsau.2c00111] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
6
Kadupitiya JCS, Fox GC, Jadhao V. Solving Newton’s equations of motion with large timesteps using recurrent neural networks based operators. MACHINE LEARNING: SCIENCE AND TECHNOLOGY 2022. [DOI: 10.1088/2632-2153/ac5f60] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
7
Machine-Learned Free Energy Surfaces for Capillary Condensation and Evaporation in Mesopores. ENTROPY 2022;24:e24010097. [PMID: 35052123 PMCID: PMC8774451 DOI: 10.3390/e24010097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/15/2021] [Revised: 12/29/2021] [Accepted: 01/05/2022] [Indexed: 12/04/2022]
8
Statt A, Kleeblatt DC, Reinhart WF. Unsupervised learning of sequence-specific aggregation behavior for a model copolymer. SOFT MATTER 2021;17:7697-7707. [PMID: 34350929 DOI: 10.1039/d1sm01012c] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
9
Clegg PS. Characterising soft matter using machine learning. SOFT MATTER 2021;17:3991-4005. [PMID: 33881037 DOI: 10.1039/d0sm01686a] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2023]
10
O'Leary J, Mao R, Pretti EJ, Paulson JA, Mittal J, Mesbah A. Deep learning for characterizing the self-assembly of three-dimensional colloidal systems. SOFT MATTER 2021;17:989-999. [PMID: 33284930 DOI: 10.1039/d0sm01853h] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
11
Das A, Limmer DT. Variational design principles for nonequilibrium colloidal assembly. J Chem Phys 2021;154:014107. [DOI: 10.1063/5.0038652] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
12
Borrelli E, Parravano M, Sacconi R, Costanzo E, Querques L, Vella G, Bandello F, Querques G. Guidelines on Optical Coherence Tomography Angiography Imaging: 2020 Focused Update. Ophthalmol Ther 2020;9:697-707. [PMID: 32740741 PMCID: PMC7708612 DOI: 10.1007/s40123-020-00286-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Indexed: 02/07/2023]  Open
13
Pattern detection in colloidal assembly: A mosaic of analysis techniques. Adv Colloid Interface Sci 2020;284:102252. [PMID: 32971396 DOI: 10.1016/j.cis.2020.102252] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 08/27/2020] [Accepted: 08/28/2020] [Indexed: 01/19/2023]
14
Culha U, Davidson ZS, Mastrangeli M, Sitti M. Statistical reprogramming of macroscopic self-assembly with dynamic boundaries. Proc Natl Acad Sci U S A 2020;117:11306-11313. [PMID: 32385151 PMCID: PMC7260983 DOI: 10.1073/pnas.2001272117] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
15
Whitelam S, Tamblyn I. Learning to grow: Control of material self-assembly using evolutionary reinforcement learning. Phys Rev E 2020;101:052604. [PMID: 32575260 DOI: 10.1103/physreve.101.052604] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2019] [Accepted: 03/29/2020] [Indexed: 06/11/2023]
16
Huang S, Quevillon MJ, Kyhl S, Whitmer JK. Surveying the free energy landscape of clusters of attractive colloidal spheres. J Chem Phys 2020;152:134901. [PMID: 32268752 DOI: 10.1063/1.5144984] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
17
Borrelli E, Viggiano P, Evangelista F, Toto L, Mastropasqua R. Eyelashes Artifact in Ultra-Widefield Optical Coherence Tomography Angiography. Ophthalmic Surg Lasers Imaging Retina 2020;50:740-743. [PMID: 31755975 DOI: 10.3928/23258160-20191031-11] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2019] [Accepted: 03/26/2019] [Indexed: 12/31/2022]
18
Bejagam KK, Singh SK, Ahn R, Deshmukh SA. Unraveling the Conformations of Backbone and Side Chains in Thermosensitive Bottlebrush Polymers. Macromolecules 2019. [DOI: 10.1021/acs.macromol.9b01021] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
19
Borrelli E, Sadda SR, Uji A, Querques G. Pearls and Pitfalls of Optical Coherence Tomography Angiography Imaging: A Review. Ophthalmol Ther 2019;8:215-226. [PMID: 30868418 PMCID: PMC6513942 DOI: 10.1007/s40123-019-0178-6] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2019] [Indexed: 12/28/2022]  Open
20
Coughlan ACH, Torres-Díaz I, Zhang J, Bevan MA. Non-equilibrium steady-state colloidal assembly dynamics. J Chem Phys 2019;150:204902. [PMID: 31153195 DOI: 10.1063/1.5094554] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
21
Lee EY, Zhang C, Di Domizio J, Jin F, Connell W, Hung M, Malkoff N, Veksler V, Gilliet M, Ren P, Wong GCL. Helical antimicrobial peptides assemble into protofibril scaffolds that present ordered dsDNA to TLR9. Nat Commun 2019;10:1012. [PMID: 30833557 PMCID: PMC6399285 DOI: 10.1038/s41467-019-08868-w] [Citation(s) in RCA: 51] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2018] [Accepted: 12/27/2018] [Indexed: 01/14/2023]  Open
22
Borrelli E, Sarraf D, Freund KB, Sadda SR. OCT angiography and evaluation of the choroid and choroidal vascular disorders. Prog Retin Eye Res 2018;67:30-55. [DOI: 10.1016/j.preteyeres.2018.07.002] [Citation(s) in RCA: 169] [Impact Index Per Article: 28.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 07/18/2018] [Accepted: 07/24/2018] [Indexed: 12/31/2022]
23
Mansbach RA, Ferguson AL. Patchy Particle Model of the Hierarchical Self-Assembly of π-Conjugated Optoelectronic Peptides. J Phys Chem B 2018;122:10219-10236. [DOI: 10.1021/acs.jpcb.8b05781] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
24
Bejagam KK, Singh S, An Y, Deshmukh SA. Machine-Learned Coarse-Grained Models. J Phys Chem Lett 2018;9:4667-4672. [PMID: 30024761 DOI: 10.1021/acs.jpclett.8b01416] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
25
Reinhart WF, Panagiotopoulos AZ. Automated crystal characterization with a fast neighborhood graph analysis method. SOFT MATTER 2018;14:6083-6089. [PMID: 29989134 DOI: 10.1039/c8sm00960k] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
26
Wang J, Gayatri M, Ferguson AL. Coarse-Grained Molecular Simulation and Nonlinear Manifold Learning of Archipelago Asphaltene Aggregation and Folding. J Phys Chem B 2018;122:6627-6647. [DOI: 10.1021/acs.jpcb.8b01634] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
27
Zhang J, Luijten E, Grzybowski BA, Granick S. Active colloids with collective mobility status and research opportunities. Chem Soc Rev 2018;46:5551-5569. [PMID: 28762406 DOI: 10.1039/c7cs00461c] [Citation(s) in RCA: 103] [Impact Index Per Article: 17.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
28
Ferguson AL. Machine learning and data science in soft materials engineering. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018;30:043002. [PMID: 29111979 DOI: 10.1088/1361-648x/aa98bd] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
29
Wang J, Ferguson AL. A Study of the Morphology, Dynamics, and Folding Pathways of Ring Polymers with Supramolecular Topological Constraints Using Molecular Simulation and Nonlinear Manifold Learning. Macromolecules 2018. [DOI: 10.1021/acs.macromol.7b01684] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
30
Wang J, Ferguson AL. Nonlinear machine learning in simulations of soft and biological materials. MOLECULAR SIMULATION 2017. [DOI: 10.1080/08927022.2017.1400164] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
31
Reinhart WF, Panagiotopoulos AZ. Multi-atom pattern analysis for binary superlattices. SOFT MATTER 2017;13:6803-6809. [PMID: 28949366 DOI: 10.1039/c7sm01642e] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
32
Zhang J, Grzybowski BA, Granick S. Janus Particle Synthesis, Assembly, and Application. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2017;33:6964-6977. [PMID: 28678499 DOI: 10.1021/acs.langmuir.7b01123] [Citation(s) in RCA: 188] [Impact Index Per Article: 26.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
33
Wang J, Gayatri MA, Ferguson AL. Mesoscale Simulation and Machine Learning of Asphaltene Aggregation Phase Behavior and Molecular Assembly Landscapes. J Phys Chem B 2017;121:4923-4944. [DOI: 10.1021/acs.jpcb.7b02574] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
34
Patra TK, Meenakshisundaram V, Hung JH, Simmons DS. Neural-Network-Biased Genetic Algorithms for Materials Design: Evolutionary Algorithms That Learn. ACS COMBINATORIAL SCIENCE 2017;19:96-107. [PMID: 27997791 DOI: 10.1021/acscombsci.6b00136] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
35
Cui J, Long D, Shapturenka P, Kretzschmar I, Chen X, Wang T. Janus particle-based microprobes: Determination of object orientation. Colloids Surf A Physicochem Eng Asp 2017. [DOI: 10.1016/j.colsurfa.2016.11.017] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
36
Long AW, Phillips CL, Jankowksi E, Ferguson AL. Nonlinear machine learning and design of reconfigurable digital colloids. SOFT MATTER 2016;12:7119-7135. [PMID: 27498992 DOI: 10.1039/c6sm01156j] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
37
Zhang J, Granick S. Natural selection in the colloid world: active chiral spirals. Faraday Discuss 2016;191:35-46. [DOI: 10.1039/c6fd00077k] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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