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Li K, Yang S, Wang H, Wu Z, Liang Y, Gong X, Peng X, Qin P. Molecular spectra and docking simulations investigated the binding mechanisms of tetracycline onto E. coli extracellular polymeric substances. Talanta 2024; 276:126231. [PMID: 38788376 DOI: 10.1016/j.talanta.2024.126231] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 05/04/2024] [Accepted: 05/07/2024] [Indexed: 05/26/2024]
Abstract
Extracellular polymeric substances (EPS), which were an important fraction of natural organic matter (NOM), played an important role in various environmental processes. However, the heterogeneity, complexity, and dynamics of EPS make their interactions with antibiotics elusive. Using advanced multispectral technology, this study examined how EPS interacts with different concentrations of tetracycline (TC) in the soil system. Our results demonstrated that protein-like (C1), fulvic-like (C2), and humic-like (C3) fractions were identified from EPS. Two-dimensional synchronous correlation spectroscopy (2D-SF-COS) indicated that the protein-like fraction gave faster responses than the fulvic-like fraction during the TC binding process. The sequence of structural changes in EPS due to TC binding was revealed by two-dimensional Fourier Transformation Infrared correlation spectroscopy (2D-FTIR-COS) as follows: 1550 > 1660 > 1395 > 1240 > 1087 cm-1. It is noteworthy that the sensitivity of the amide group to TC has been preserved, with its intensity gradually increasing to become the primary binding site for TC. The integration of hetero-2DCOS maps with moving window 2D correlation spectroscopy (MW2DCOS) provided a unique insight into understanding the correlation between EPS fractions and functional groups during the TC binding process. Moreover, molecular docking (MD) discovered that the extracellular proteins would provide plenty of binding sites with TC through salt bridges, hydrogen bonds, and π-π base-stacking forces. With these results, systematic investigations of the dynamic changes in EPS components under different concentrations of antibiotic exposure demonstrated the advanced capabilities of multispectral technology in examining intricate interactions with EPS in the soil environment.
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Affiliation(s)
- Kun Li
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China
| | - Sipei Yang
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China
| | - Haoyang Wang
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China
| | - Zhibin Wu
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China.
| | - Yunshan Liang
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China.
| | - Xiaomin Gong
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China
| | - Xin Peng
- College of Chemistry and Chemical Engineering, Hunan Normal University, Changsha, Hunan, 410081, China
| | - Pufeng Qin
- Hunan Provincial Key Laboratory of Rural Ecosystem Health in Dongting Lake Area, College of Environment and Ecology, Hunan Agricultural University, Changsha, Hunan, 410128, China
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2
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Li X, Liu H, Wang Y, Crabbe MJC, Wang L, Ma W, Ren Z. Preparation of a novel metallothionein-AuNP composite material by genetic modification and AuS covalent combination. Int J Biol Macromol 2024; 262:129960. [PMID: 38325687 DOI: 10.1016/j.ijbiomac.2024.129960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 01/22/2024] [Accepted: 02/01/2024] [Indexed: 02/09/2024]
Abstract
Metallothionein (MTs) can be used in the prevention and treatment of tumors and diabetes due to its antioxidant properties. However, it is necessary to solve its non-transmembrane properties and further improve its antioxidant activity, increase its fluorescence visualization and enhance its stability to meet practical applications in the biomedical field. Here, we report the preparation of a novel metallothionein-AuNP composite material with high transmembrane ability, fluorescence visualization, antioxidant activity, and stability by genetic modification (introducing transduction peptide TAT, fluorescence tag GFP and increasing sulfydryl groups) and immobilization technology (covalently bonding with AuNPs). The transmembrane activity of modified proteins was verified by immunofluorescence. Increasing the sulfhydryl content within a certain range can enhance the antioxidant activity of the protein. In addition, GFP were used to further simplify the imaging of the metallothionein-AuNP composite in cells. XPS results indicated that AuNPs can immobilize metallothionein through AuS covalent bonds. TGA characterization and degradation experiments showed that thermal and degradation stability of the immobilized material was significantly improved. This work provides new ideas to construct metallothionein composites with high transmembrane ability, antioxidant activity, fluorescence visualization and stability to meet novel applications in the biomedical field.
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Affiliation(s)
- Xuefen Li
- School of Life Science, Shanxi University, Taiyuan 030006, PR China
| | - Hui Liu
- School of Life Science, Shanxi University, Taiyuan 030006, PR China
| | - Yuxia Wang
- School of Life Science, Shanxi University, Taiyuan 030006, PR China
| | - M James C Crabbe
- School of Life Science, Shanxi University, Taiyuan 030006, PR China; Wolfson College, University of Oxford, Oxford OX2 6UD, UK; Institute of Biomedical and Environmental Science & Technology, School of Life Sciences, Faculty of Creative Arts, Technologies and Science, University of Bedfordshire, University Square, Luton LU1 3JU, UK
| | - Lan Wang
- School of Life Science, Shanxi University, Taiyuan 030006, PR China
| | - Wenli Ma
- School of Life Science, Shanxi University, Taiyuan 030006, PR China.
| | - Zhumei Ren
- School of Life Science, Shanxi University, Taiyuan 030006, PR China.
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3
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Kamińska K, Wiercigroch E, Małek K, Grzesiak M. Biomolecular composition of porcine ovarian follicles following in vitro treatment of vitamin D 3 and insulin alone or in combination. Reprod Biol 2023; 23:100818. [PMID: 37862827 DOI: 10.1016/j.repbio.2023.100818] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Revised: 10/12/2023] [Accepted: 10/14/2023] [Indexed: 10/22/2023]
Abstract
The study aimed to analyze changes in biomolecular composition of granulosa and theca interna cells of porcine ovarian follicles following in vitro treatment of vitamin D3 and insulin alone or in combination. Medium antral follicles (n = 4/each group) were cultured alone (C; control) or in the presence of 1α,25(OH)2D3 (VD; 100 ng/mL) and insulin (I; 10 ng/mL) separately or in combination, VD and I (VD+I). Then paraplast-embedded ovarian follicles were used for Fourier Transform Infrared (FTIR) spectroscopy and respective histological stainings. FTIR analysis revealed changes in the content of fibrous proteins (mainly collagens) within theca interna following vitamin D3 and insulin co-administration that was verified by Masson's trichrome staining. Treatment-dependent differences were also observed in the secondary structure of proteins, indicating enhanced conversion to α-helices in response to vitamin D3 and insulin action/interaction in both follicular compartments. In the granulosa and theca interna layers, tendency to lower DNA content in the VD+I group was noted and confirmed by Fulgen's staining. Finally, altered monosaccharides production in both follicular layers was found. Based on FTIR results, it is possible to attribute the observed alterations to biological processes that could be regulated by vitamin D3 and insulin in the porcine ovarian follicles.
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Affiliation(s)
- Kinga Kamińska
- Doctoral School of Exact and Natural Sciences, Jagiellonian University, Poland; Department of Endocrinology, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Krakow, Poland
| | - Ewelina Wiercigroch
- Department of Chemical Physics, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Kamilla Małek
- Department of Chemical Physics, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Krakow, Poland
| | - Małgorzata Grzesiak
- Department of Endocrinology, Institute of Zoology and Biomedical Research, Faculty of Biology, Jagiellonian University, Gronostajowa 9, 30-387 Krakow, Poland.
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4
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Cun X, Jansman MMT, Liu X, Boureau V, Thulstrup PW, Hosta-Rigau L. Hemoglobin-stabilized gold nanoclusters displaying oxygen transport ability, self-antioxidation, auto-fluorescence properties and long-term storage potential. RSC Adv 2023; 13:15540-15553. [PMID: 37228685 PMCID: PMC10203863 DOI: 10.1039/d3ra00689a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 05/12/2023] [Indexed: 05/27/2023] Open
Abstract
The development of hemoglobin (Hb)-based oxygen carriers (HBOCs) holds a lot of potential to overcome important drawbacks of donor blood such as a short shelf life or the potential risk of infection. However, a crucial limitation of current HBOCs is the autoxidation of Hb into methemoglobin (metHb), which lacks oxygen-carrying capacity. Herein, we address this challenge by fabricating a Hb and gold nanoclusters (AuNCs) composite (Hb@AuNCs) which preserves the exceptional features of both systems. Specifically, the Hb@AuNCs retain the oxygen-transporting properties of Hb, while the AuNCs provide antioxidant functionality as shown by their ability to catalytically deplete harmful reactive oxygen species (ROS). Importantly, these ROS-scavenging properties translate into antioxidant protection by minimizing the autoxidation of Hb into non-functional metHb. Furthermore, the AuNCs render Hb@AuNCs with auto-fluorescence properties which could potentially allow them to be monitored once administered into the body. Last but not least, these three features (i.e., oxygen transport, antioxidant and fluorescence properties) are well maintained following storage as a freeze-dried product. Thus, overall, the as-prepared Hb@AuNCs hold the potential to be used as a multifunctional blood surrogate in the near future.
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Affiliation(s)
- Xingli Cun
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark Nils Koppels Allé, Building 423 2800 Kgs. Lyngby Denmark
| | - Michelle M T Jansman
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark Nils Koppels Allé, Building 423 2800 Kgs. Lyngby Denmark
| | - Xiaoli Liu
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark Nils Koppels Allé, Building 423 2800 Kgs. Lyngby Denmark
| | - Victor Boureau
- Interdisciplinary Center for Electron Microscopy (CIME), École Polytechnique Fédérale de Lausanne CH-1015 Lausanne Switzerland
| | - Peter W Thulstrup
- Department of Chemistry, University of Copenhagen Universitetsparken 5 2100 Copenhagen Denmark
| | - Leticia Hosta-Rigau
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark Nils Koppels Allé, Building 423 2800 Kgs. Lyngby Denmark
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5
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Liu X, Domingues NP, Oveisi E, Coll-Satue C, Jansman MMT, Smit B, Hosta-Rigau L. Metal-organic framework-based oxygen carriers with antioxidant activity resulting from the incorporation of gold nanozymes. Biomater Sci 2023; 11:2551-2565. [PMID: 36786283 DOI: 10.1039/d2bm01405j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2023]
Abstract
Blood transfusions are a life-saving procedure since they can preserve the body's oxygen levels in patients suffering from acute trauma, undergoing surgery, receiving chemotherapy or affected by severe blood disorders. Due to the central role of hemoglobin (Hb) in oxygen transport, so-called Hb-based oxygen carriers (HBOCs) are currently being developed for situations where donor blood is not available. In this context, an important challenge that needs to be addressed is the oxidation of Hb into methemoglobin (metHb), which is unable to bind and release oxygen. While several research groups have considered the incorporation of antioxidant enzymes to create HBOCs with minimal metHb conversion, the use of biological enzymes has important limitations related to their high cost, potential immunogenicity or low stability in vivo. Thus, nanomaterials with enzyme-like properties (i.e., nanozymes (NZs)) have emerged as a promising alternative. Amongst the different NZs, gold (Au)-based metallic nanoparticles are widely used for biomedical applications due to their biocompatibility and multi-enzyme mimicking abilities. Thus, in this work, we incorporate Au-based NZs into a type of HBOC previously reported by our group (i.e., Hb-loaded metal-organic framework (MOF)-based nanocarriers (NCs)) and investigate their antioxidant properties. Specifically, we prepare MOF-NCs loaded with Au-based NZs and demonstrate their ability to catalytically deplete over multiple rounds of two prominent reactive oxygen species (ROS) that exacerbate Hb's autoxidation (i.e., hydrogen peroxide and the superoxide radical). Importantly, following loading with Hb, we show how these ROS-scavenging properties translate into a decrease in metHb content. All in all, these results highlight the potential of NZs to create novel HBOCs with antioxidant protection which may find applications as a blood substitute in the future.
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Affiliation(s)
- Xiaoli Liu
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark, Nils Koppels Allé, Building 423, 2800 Kgs. Lyngby, Denmark.
| | - Nency Patricio Domingues
- Laboratory of Molecular Simulation (LSMO), Institute of Chemical Sciences and Engineering (ISIC), École Polytechnique Fédérale de Lausanne (EPFL)-Valais, CH-1950 Sion, Switzerland
| | - Emad Oveisi
- Interdisciplinary Centre for Electron Microscopy (CIME), École Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
| | - Clara Coll-Satue
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark, Nils Koppels Allé, Building 423, 2800 Kgs. Lyngby, Denmark.
| | - Michelle Maria Theresia Jansman
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark, Nils Koppels Allé, Building 423, 2800 Kgs. Lyngby, Denmark.
| | - Berend Smit
- Laboratory of Molecular Simulation (LSMO), Institute of Chemical Sciences and Engineering (ISIC), École Polytechnique Fédérale de Lausanne (EPFL)-Valais, CH-1950 Sion, Switzerland
| | - Leticia Hosta-Rigau
- DTU Health Tech, Center for Nanomedicine and Theranostics, Technical University of Denmark, Nils Koppels Allé, Building 423, 2800 Kgs. Lyngby, Denmark.
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6
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Yuan Y, Jia H, Xu D, Wang J. Novel method in emerging environmental contaminants detection: Fiber optic sensors based on microfluidic chips. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 857:159563. [PMID: 36265627 DOI: 10.1016/j.scitotenv.2022.159563] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 10/13/2022] [Accepted: 10/15/2022] [Indexed: 06/16/2023]
Abstract
Recently, human industrial practices and certain activities have caused the widespread spread of emerging contaminants throughout the environmental matrix, even in trace amounts, which constitute a serious threat to human health and environmental ecology, and have therefore attracted the attention of research scholars. Different traditional techniques are used to monitor water pollutants, However, they still have some disadvantages such as high costs, ecological problems and treatment times, and require technicians and researchers to operate them effectively. There is therefore an urgent need to develop simple, inexpensive and highly sensitive methods to sense and detect these toxic environmental contaminants. Optical fiber microfluidic coupled sensors offer different advantages over other detection technologies, allowing manipulation of light through controlled microfluidics, precise detection results and good stability, and have therefore become a logical device for screening and identifying environmental contaminants. This paper reviews the application of fiber optic microfluidic sensors in emerging environmental contaminant detection, focusing on the characteristics of different emerging contaminant types, different types of fiber optic microfluidic sensors, methodological principles of detection, and specific emerging contaminant detection applications. The optical detection methods in fiber optic microfluidic chips and their respective advantages and disadvantages are analyzed in the discussion. The applications of fiber optic biochemical sensors in microfluidic chips, especially for the detection of emerging contaminants in the aqueous environment, such as personal care products, endocrine disruptors, and perfluorinated compounds, are reviewed. Finally, the prospects of fiber optic microfluidic coupled sensors in environmental detection and related fields are foreseen.
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Affiliation(s)
- Yang Yuan
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, China; School of Material Science and Engineering, Tiangong University, Tianjin 300387, China
| | - Hui Jia
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, China; School of Environmental Science and Engineering, Tiangong University, Tianjin 300387, China.
| | - DanYu Xu
- Tianjin Academy of Eco-enviromental Sciences, Tianjin 300191, China
| | - Jie Wang
- State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin 300387, China; School of Environmental Science and Engineering, Tiangong University, Tianjin 300387, China; Cangzhou Institute of Tiangong University, Tiangong University, Tianjin 300387, China.
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7
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Zadka Ł, Chrabaszcz K, Buzalewicz I, Wiercigroch E, Glatzel-Plucińska N, Szleszkowski Ł, Gomułkiewicz A, Piotrowska A, Kurnol K, Dzięgiel P, Jurek T, Malek K. Molecular profiling of the intestinal mucosa and immune cells of the colon by multi-parametric histological techniques. Sci Rep 2021; 11:11309. [PMID: 34050214 PMCID: PMC8163794 DOI: 10.1038/s41598-021-90761-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 05/17/2021] [Indexed: 02/07/2023] Open
Abstract
The impact of the post-mortem interval (PMI) on the optical molecular characteristics of the colonic mucosa and the gut-associated lymphoid tissue (GALT) were examined by multi-parametric measurements techniques. Inflammatory cells were identified by immunohistochemical staining. Molecular parameters were estimated using the Raman spectroscopy (RS) and Fourier Transform Infrared (FTIR) spectroscopic imaging. The 3D refractive index (3D-RI) distributions of samples were determined using the digital holographic tomography. The distribution of immune cells between post-mortem (PM) and normal controls did show significant differences for CD4 (P = 0.0016) or CD8 (P < 0.0001), whose expression level was decreased in PM cases. No association was found between individual PMI values and inflammatory cell distribution. However, there was a tendency for a negative correlation between CD4+ cells and PMI (r = - 0.542, P = 0.032). The alterations ongoing in post-mortem tissue may suggest that PMI has a suppressive effect on the effector properties of the cell-mediated immunity. Moreover, it was confirmed that spectroscopic and digital holotomographic histology are also a useful technique for characterization of the differences in inflammation of varying intensity and in GALT imaging in a solid tissue. Anatomical location of immune cells and methods of tissue fixation determine the molecular and optical parameters of the examined cases.
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Affiliation(s)
- Łukasz Zadka
- grid.4495.c0000 0001 1090 049XHistology and Embryology Division, Department of Human Morphology and Embryology, Wroclaw Medical University, Chałubińskiego 6a, 50-368 Wrocław, Poland
| | - Karolina Chrabaszcz
- grid.5522.00000 0001 2162 9631Faculty of Chemistry, Jagiellonian University in Krakow, Krakow, Poland
| | - Igor Buzalewicz
- grid.7005.20000 0000 9805 3178Bio-Optics Group, Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology, 27 Wybrzeże S. Wyspiańskiego St., 50-370, Wroclaw, Poland
| | - Ewelina Wiercigroch
- grid.5522.00000 0001 2162 9631Faculty of Chemistry, Jagiellonian University in Krakow, Krakow, Poland
| | - Natalia Glatzel-Plucińska
- grid.4495.c0000 0001 1090 049XHistology and Embryology Division, Department of Human Morphology and Embryology, Wroclaw Medical University, Chałubińskiego 6a, 50-368 Wrocław, Poland
| | - Łukasz Szleszkowski
- grid.4495.c0000 0001 1090 049XDepartment of Forensic Medicine, Forensic Medicine Unit, Wroclaw Medical University, Wroclaw, Poland
| | - Agnieszka Gomułkiewicz
- grid.4495.c0000 0001 1090 049XHistology and Embryology Division, Department of Human Morphology and Embryology, Wroclaw Medical University, Chałubińskiego 6a, 50-368 Wrocław, Poland
| | - Aleksandra Piotrowska
- grid.4495.c0000 0001 1090 049XHistology and Embryology Division, Department of Human Morphology and Embryology, Wroclaw Medical University, Chałubińskiego 6a, 50-368 Wrocław, Poland
| | - Krzysztof Kurnol
- grid.4495.c0000 0001 1090 049XHistology and Embryology Division, Department of Human Morphology and Embryology, Wroclaw Medical University, Chałubińskiego 6a, 50-368 Wrocław, Poland ,grid.4495.c0000 0001 1090 049XDepartment of General and Oncological Surgery, Wroclaw Medical University, Wrocław, Poland
| | - Piotr Dzięgiel
- grid.4495.c0000 0001 1090 049XHistology and Embryology Division, Department of Human Morphology and Embryology, Wroclaw Medical University, Chałubińskiego 6a, 50-368 Wrocław, Poland
| | - Tomasz Jurek
- grid.4495.c0000 0001 1090 049XDepartment of Forensic Medicine, Forensic Medicine Unit, Wroclaw Medical University, Wroclaw, Poland
| | - Kamilla Malek
- grid.5522.00000 0001 2162 9631Faculty of Chemistry, Jagiellonian University in Krakow, Krakow, Poland
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Xie H, Lv S, Su W, Xu W. Effect of preheating at 40℃ for 15 minutes to high-titer cold agglutinins on complete blood count. Int J Lab Hematol 2021; 43:e271-e275. [PMID: 33973701 DOI: 10.1111/ijlh.13556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Revised: 04/02/2021] [Accepted: 04/09/2021] [Indexed: 11/30/2022]
Affiliation(s)
- Hongxiang Xie
- Department of Clinical Laboratory, Zhejiang Provincial People's Hospital, Affiliated People's Hospital, Hangzhou Medical College, Hangzhou, China.,Department of Clinical Laboratory, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China
| | - Shiyu Lv
- Department of Clinical Laboratory, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China
| | - Weina Su
- Shandong Normal University Campus Hospital, Shandong Normal University, Jinan, China
| | - Wanju Xu
- Department of Clinical Laboratory, The First Affiliated Hospital of Shandong First Medical University & Shandong Provincial Qianfoshan Hospital, Jinan, China
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9
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Wang H, Wang L, Janzen E, Edgar JH, Xu XG. Total Internal Reflection Peak Force Infrared Microscopy. Anal Chem 2020; 93:731-736. [DOI: 10.1021/acs.analchem.0c01176] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Haomin Wang
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - Le Wang
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - Eli Janzen
- Tim Taylor Department of Chemical Engineering, Kansas State University, Durland Hall, Manhattan, Kansas 66506, United States
| | - James H. Edgar
- Tim Taylor Department of Chemical Engineering, Kansas State University, Durland Hall, Manhattan, Kansas 66506, United States
| | - Xiaoji G. Xu
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
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10
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Liu DF, Li WW. Potential-dependent extracellular electron transfer pathways of exoelectrogens. Curr Opin Chem Biol 2020; 59:140-146. [PMID: 32769012 DOI: 10.1016/j.cbpa.2020.06.005] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2020] [Revised: 06/10/2020] [Accepted: 06/13/2020] [Indexed: 10/23/2022]
Abstract
Exoelectrogens are distinct from other bacteria owing to their unique extracellular electron transfer (EET) abilities that allow for anaerobic respiration with various external redox-active surfaces, including electrode and metal oxides. Although the EET process is known to trigger diverse extracellular redox reactions, the reverse impact has been long overlooked. Recent evidences show that exoelectrogens can sense the potential changes of external surfaces and alter their EET strategies accordingly, which imparts them remarkable abilities in adapting to diverse and redox-variable environment. This mini-review provides a condensed overview and critical analysis about the recent discoveries on redox-dependent EET pathways of exoelectrogens, with focus on Geobacter sulfurreducens and Shewanella oneidensis. We summarize the detailed responses of various EET components, analyze the drives and mechanisms of such responses, highlight the diversity of EET dynamics among different bacterial species and under integrated effects of redox potential and surface chemistry, and discusses the future research needs.
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Affiliation(s)
- Dong-Feng Liu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China
| | - Wen-Wei Li
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China; USTC-City U Joint Advanced Research Center, Suzhou 215123, China.
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11
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Szczesny-Malysiak E, Dybas J, Blat A, Bulat K, Kus K, Kaczmarska M, Wajda A, Malek K, Chlopicki S, Marzec KM. Irreversible alterations in the hemoglobin structure affect oxygen binding in human packed red blood cells. BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH 2020; 1867:118803. [PMID: 32738251 DOI: 10.1016/j.bbamcr.2020.118803] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 07/02/2020] [Accepted: 07/24/2020] [Indexed: 01/06/2023]
Abstract
The ability of hemoglobin (Hb) to transport respiratory gases is directly linked to its quaternary structure properties and reversible changes between T (tense) and R (relax) state. In this study we demonstrated that packed red blood cells (pRBCs) storage resulted in a gradual increase in the irreversible changes in the secondary and quaternary structures of Hb, with subsequent impairment of the T↔R transition. Such alteration was associated with the presence of irreversibly settled in the relaxed form, quaternary structure of Hb, which we termed R'. On the secondary structure level, disordered protein organization involved formation of β-sheets and a decrease in α-helices related to the aggregation process stabilized by strong intermolecular hydrogen bonding. Compensatory changes in RBCs metabolism launched to preserve reductive microenvironment were disclosed as an activation of nicotinamide adenine dinucleotide phosphate (NADPH) production and increased reduced to oxidized glutathione (GSH/GSSG) ratio. For the first time we showed the relationship between secondary structure changes and the occurrence of newly discovered R', which through an artificial increase in oxyhemoglobin level altered Hb ability to bind and release oxygen.
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Affiliation(s)
- Ewa Szczesny-Malysiak
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland.
| | - Jakub Dybas
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland.
| | - Aneta Blat
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland; Faculty of Chemistry, Jagiellonian University, 2 Gronostajowa Str., 30-387 Krakow, Poland.
| | - Katarzyna Bulat
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland.
| | - Kamil Kus
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland.
| | - Magdalena Kaczmarska
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland.
| | - Aleksandra Wajda
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland; Faculty of Materials Science and Ceramics, AGH University of Science and Technology, Mickiewicza 30, 30-059 Krakow, Poland.
| | - Kamilla Malek
- Faculty of Chemistry, Jagiellonian University, 2 Gronostajowa Str., 30-387 Krakow, Poland.
| | - Stefan Chlopicki
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland; Chair of Pharmacology, Jagiellonian University Medical College, Grzegorzecka 16, 31-531 Krakow, Poland.
| | - Katarzyna M Marzec
- Jagiellonian Center for Experimental Therapeutics, Jagiellonian University, 14 Bobrzynskiego St., 30-348 Krakow, Poland.
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Yu HQ. Molecular Insights into Extracellular Polymeric Substances in Activated Sludge. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2020; 54:7742-7750. [PMID: 32479069 DOI: 10.1021/acs.est.0c00850] [Citation(s) in RCA: 162] [Impact Index Per Article: 40.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/06/2023]
Abstract
Extracellular polymeric substances (EPS) are known to crucially affect the properties and performance of activated sludge, but the detailed influential mechanisms and the pertinence to specific compositional, structural properties of EPS are still elusive. Such knowledge gaps have severely limited our ability in optimizing biological wastewater treatment processes, for which long-term robust and efficient sludge performance remains one of the main bottlenecks. Here, we overview the new knowledge on the molecular structure of sludge EPS gained over the past few years and discuss the future challenges and opportunities for further advancing EPS study and engineering. The structural and functional features of several macromolecules in sludge EPS and their important structural roles in granular sludge are analyzed in detail. The EPS-pollutant interactions and environment-dependent regulation machinery on EPS production are deciphered. Lastly, the remaining knowledge gaps are identified, and the future research needs that may lead to molecular-level understanding and precise engineering of sludge EPS are highlighted.
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Affiliation(s)
- Han-Qing Yu
- CAS Key Laboratory of Urban Pollutant Conversion, Department of Environmental Science and Engineering, University of Science and Technology of China, Hefei 230026, China
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13
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Recent advances in fiber-optic evanescent wave sensors for monitoring organic and inorganic pollutants in water. Trends Analyt Chem 2020. [DOI: 10.1016/j.trac.2020.115892] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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14
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Schwenk N, Mizaikoff B, Cárdenas S, López-Lorente ÁI. Gold-nanostar-based SERS substrates for studying protein aggregation processes. Analyst 2018; 143:5103-5111. [PMID: 30178815 DOI: 10.1039/c8an00804c] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Aggregation of proteins has been related to some neurodegenerative diseases such as Alzheimer's and Parkinson's among others. Raman spectroscopy is a useful technique for the investigation of protein conformation and of changes in their secondary structure. In this study, a surface enhanced Raman spectroscopy (SERS) substrate based on the immobilization of plasmonic gold nanostars on a glass slide via silanization of the surface has been prepared and characterized. Gold nanostars were synthesized via a seed-growth method using gold nanoparticles as seeds obtained via stainless steel as the reducing agent. The plasmonic substrate provided an enhancement of 5.7 × 102 fold, as shown for the Raman signal of crystal violet. Using this SERS-active substrate, the investigation of aggregation processes of bovine serum albumin (BSA) and myoglobin proteins upon temperature and solvent modification has been enabled with enhanced sensitivity. Both curve fitting and deconvolution of the amide I band, as well as 2D correlation analysis, were employed for the evaluation of the changes in the SERS spectra of the protein samples. The amide I band within the SERS spectra of the BSA protein revealed a decrease in the α-helix structures within the secondary structure of the protein while the presence of β-sheet structures increased with temperature and solvent concentration.
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Affiliation(s)
- Natalie Schwenk
- Institute of Analytical and Bioanalytical Chemistry, Ulm University, Ulm, Germany
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16
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Tao Y, Wu Y, Zhang L. Advancements of two dimensional correlation spectroscopy in protein researches. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 197:185-193. [PMID: 29409703 DOI: 10.1016/j.saa.2018.01.039] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 01/09/2018] [Accepted: 01/13/2018] [Indexed: 05/26/2023]
Abstract
The developments of two-dimensional correlation spectroscopy (2DCOS) applications in protein studies are discussed, especially for the past two decades. The powerful utilities of 2DCOS combined with various analytical techniques in protein studies are summarized. The emphasis is on the vibration spectroscopic techniques including IR, NIR, Raman and optical activity (ROA), as well as vibration circular dichroism (VCD) and fluorescence spectroscopy. In addition, some new developments, such as hetero-spectral 2DCOS, moving-window correlation, and model based correlation, are also reviewed for their utility in the investigation of the secondary structure, denaturation, folding and unfolding changes of protein. Finally, the new possibility and challenges of 2DCOS in protein research are highlighted as well.
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Affiliation(s)
- Yanchun Tao
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, No. 2699 Qianjin Street, Changchun 130012, China
| | - Yuqing Wu
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, No. 2699 Qianjin Street, Changchun 130012, China.
| | - Liping Zhang
- Department of Foundation, Jilin Business and Technology College, No. 1666 Kalunhu Street, Changchun 130507, China.
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Wu Y, Zhang L, Jung YM, Ozaki Y. Two-dimensional correlation spectroscopy in protein science, a summary for past 20years. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 189:291-299. [PMID: 28823970 DOI: 10.1016/j.saa.2017.08.014] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/30/2017] [Accepted: 08/04/2017] [Indexed: 05/26/2023]
Abstract
Two-dimensional correlation spectroscopy (2DCOS) has been widely used to Infrared, Raman, Near IR, Optical Activity (ROA), Vibrational Circular Dichroism (VCD) and Fluorescence spectroscopy. In addition, several new developments, such as 2D hetero-correlation analysis, moving-window two-dimensional (MW2D) correlation, model based correlation (βν and kν correlation analyses) have also well incorporated into protein research. They have been used to investigate secondary structure, denaturation, folding and unfolding changes of protein, and have contributed greatly to the field of protein science. This review provides an overview of the applications of 2DCOS in the field of protein science for the past 20 year, especially to memory our old friend, Dr. Boguslawa Czarnik-Matusewicz, for her great contribution in this research field. The powerful utility of 2DCOS combined with various analytical techniques in protein studies is summarized. The noteworthy developments and perspective of 2DCOS in this field are highlighted finally.
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Affiliation(s)
- Yuqing Wu
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, No. 2699 Qianjin Street, Changchun 130012, China
| | - Liping Zhang
- Department of Foundation, Jilin Business and Technology College, No. 1666 Kalunhu Street, Changchun 130507, China.
| | - Young Mee Jung
- Department of Chemistry, Institute for Molecular Science and Fusion Technology, Kangwon National University, Chuncheon 24341, Republic of Korea
| | - Yukihiro Ozaki
- School of Science and Technology, Kwansei-Gakuin University, 2-1 Gakuen, Sanda, Hyogo 669-1337, Japan
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