1
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Pankratov D, Hidalgo Martinez S, Karman C, Gerzhik A, Gomila G, Trashin S, Boschker HTS, Geelhoed JS, Mayer D, De Wael K, J R Meysman F. The organo-metal-like nature of long-range conduction in cable bacteria. Bioelectrochemistry 2024; 157:108675. [PMID: 38422765 DOI: 10.1016/j.bioelechem.2024.108675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Revised: 02/22/2024] [Accepted: 02/24/2024] [Indexed: 03/02/2024]
Abstract
Cable bacteria are filamentous, multicellular microorganisms that display an exceptional form of biological electron transport across centimeter-scale distances. Currents are guided through a network of nickel-containing protein fibers within the cell envelope. Still, the mechanism of long-range conduction remains unresolved. Here, we characterize the conductance of the fiber network under dry and wet, physiologically relevant, conditions. Our data reveal that the fiber conductivity is high (median value: 27 S cm-1; range: 2 to 564 S cm-1), does not show any redox signature, has a low thermal activation energy (Ea = 69 ± 23 meV), and is not affected by humidity or the presence of ions. These features set the nickel-based conduction mechanism in cable bacteria apart from other known forms of biological electron transport. As such, conduction resembles that of an organic semi-metal with a high charge carrier density. Our observation that biochemistry can synthesize an organo-metal-like structure opens the way for novel bio-based electronic technologies.
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Affiliation(s)
- Dmitrii Pankratov
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Silvia Hidalgo Martinez
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Cheryl Karman
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Anastasia Gerzhik
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Gabriel Gomila
- Nanoscale Bioelectric Characterization Group, Institute for Bioengineering of Catalunya (IBEC), The Barcelona Institute of Science and Technology, Baldiri i Reixac 15-21, 08028 Barcelona, Spain; Department of Electronics and Biomedical Engineering, Universitat de Barcelona, Martí i Franqués 1, 08028 Barcelona, Spain
| | - Stanislav Trashin
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Henricus T S Boschker
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, the Netherlands
| | - Jeanine S Geelhoed
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium
| | - Dirk Mayer
- Institute of Biological Information Processing, Bioelectronics (IBI-3), Forschungszentrum Jülich, 52428 Jülich, Germany
| | - Karolien De Wael
- A-Sense Lab, Department of Bioscience Engineering, University of Antwerp, Groenenborgerlaan 171, B-2020 Antwerpen, Belgium
| | - Filip J R Meysman
- Geobiology Group, Microbial Systems Technology Excellence Centre, Department of Biology, University of Antwerp, Universiteitsplein 1, B-2610 Wilrijk, Belgium; Department of Biotechnology, Delft University of Technology, Van der Maasweg 9, 2629HZ Delft, the Netherlands.
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2
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Schwarz IA, Alsaqri B, Lekbach Y, Henry K, Gorman S, Woodard T, Dion L, Real L, Holmes DE, Smith JA, Lovley DR. Lack of physiological evidence for cytochrome filaments functioning as conduits for extracellular electron transfer. mBio 2024; 15:e0069024. [PMID: 38717196 PMCID: PMC11077965 DOI: 10.1128/mbio.00690-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 03/08/2024] [Indexed: 05/12/2024] Open
Abstract
Extracellular cytochrome filaments are proposed to serve as conduits for long-range extracellular electron transfer. The primary functional physiological evidence has been the reported inhibition of Geobacter sulfurreducens Fe(III) oxide reduction when the gene for the filament-forming cytochrome OmcS is deleted. Here we report that the OmcS-deficient strain from that original report reduces Fe(III) oxide as well as the wild-type, as does a triple mutant in which the genes for the other known filament-forming cytochromes were also deleted. The triple cytochrome mutant displayed filaments with the same 3 nm diameter morphology and conductance as those produced by Escherichia coli heterologously expressing the G. sulfurreducens PilA pilin gene. Fe(III) oxide reduction was inhibited when the pilin gene in cytochrome-deficient mutants was modified to yield poorly conductive 3 nm diameter filaments. The results are consistent with the concept that 3 nm diameter electrically conductive pili (e-pili) are required for G. sulfurreducens long-range extracellular electron transfer. In contrast, rigorous physiological functional evidence is lacking for cytochrome filaments serving as conduits for long-range electron transport. IMPORTANCE Unraveling microbial extracellular electron transfer mechanisms has profound implications for environmental processes and advancing biological applications. This study on Geobacter sulfurreducens challenges prevailing beliefs on cytochrome filaments as crucial components thought to facilitate long-range electron transport. The discovery of an OmcS-deficient strain's unexpected effectiveness in Fe(III) oxide reduction prompted a reevaluation of the key conduits for extracellular electron transfer. By exploring the impact of genetic modifications on G. sulfurreducens' performance, this research sheds light on the importance of 3-nm diameter electrically conductive pili in Fe(III) oxide reduction. Reassessing these mechanisms is essential for uncovering the true drivers of extracellular electron transfer in microbial systems, offering insights that could revolutionize applications across diverse fields.
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Affiliation(s)
- Ingrid A. Schwarz
- Department of Biomolecular Sciences, Central Connecticut State University, New Britain, Connecticut, USA
| | - Baha Alsaqri
- Department of Biomolecular Sciences, Central Connecticut State University, New Britain, Connecticut, USA
| | - Yassir Lekbach
- Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, USA
| | - Kathryn Henry
- Department of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts, USA
| | - Sydney Gorman
- Department of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts, USA
| | - Trevor Woodard
- Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, USA
| | - Laura Dion
- Department of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts, USA
| | - Lauren Real
- Department of Biomolecular Sciences, Central Connecticut State University, New Britain, Connecticut, USA
| | - Dawn E. Holmes
- Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, USA
- Department of Physical and Biological Sciences, Western New England University, Springfield, Massachusetts, USA
| | - Jessica A. Smith
- Department of Biomolecular Sciences, Central Connecticut State University, New Britain, Connecticut, USA
- Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, USA
| | - Derek R. Lovley
- Department of Microbiology, University of Massachusetts Amherst, Amherst, Massachusetts, USA
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3
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Guberman-Pfeffer MJ. To be or not to be a cytochrome: electrical characterizations are inconsistent with Geobacter cytochrome 'nanowires'. Front Microbiol 2024; 15:1397124. [PMID: 38633696 PMCID: PMC11021709 DOI: 10.3389/fmicb.2024.1397124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2024] [Accepted: 03/21/2024] [Indexed: 04/19/2024] Open
Abstract
Geobacter sulfurreducens profoundly shapes Earth's biogeochemistry by discharging respiratory electrons to minerals and other microbes through filaments of a two-decades-long debated identity. Cryogenic electron microscopy has revealed filaments of redox-active cytochromes, but the same filaments have exhibited hallmarks of organic metal-like conductivity under cytochrome denaturing/inhibiting conditions. Prior structure-based calculations and kinetic analyses on multi-heme proteins are synthesized herein to propose that a minimum of ~7 cytochrome 'nanowires' can carry the respiratory flux of a Geobacter cell, which is known to express somewhat more (≥20) filaments to increase the likelihood of productive contacts. By contrast, prior electrical and spectroscopic structural characterizations are argued to be physiologically irrelevant or physically implausible for the known cytochrome filaments because of experimental artifacts and sample impurities. This perspective clarifies our mechanistic understanding of physiological metal-microbe interactions and advances synthetic biology efforts to optimize those interactions for bioremediation and energy or chemical production.
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Zhong H, Lyu H, Wang Z, Tian J, Wu Z. Application of dissimilatory iron-reducing bacteria for the remediation of soil and water polluted with chlorinated organic compounds: Progress, mechanisms, and directions. CHEMOSPHERE 2024; 352:141505. [PMID: 38387660 DOI: 10.1016/j.chemosphere.2024.141505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 02/16/2024] [Accepted: 02/19/2024] [Indexed: 02/24/2024]
Abstract
Chlorinated organic compounds are widely used as solvents, but they are pollutants that can have adverse effects on the environment and human health. Dissimilatory iron-reducing bacteria (DIRB) such as Shewanella and Geobacter have been applied to treat a wide range of halogenated organic compounds due to their specific biological properties. Until now, there has been no systematic review on the mechanisms of direct or indirect degradation of halogenated organic compounds by DIRB. This work summarizes the discussion of DIRB's ability to enhance the dechlorination of reaction systems through different pathways, both biological and biochemical. For biological dechlorination, some DIRB have self-dechlorination capabilities that directly dechlorinate by hydrolysis. Adjustment of dechlorination genes through genetic engineering can improve the dechlorination capabilities of DIRB. DIRB can also adjust the capacity for the microbial community to dechlorinate and provide nutrients to enhance the expression of dechlorination genes in other bacteria. In biochemical dechlorination, DIRB bioconverts Fe(III) to Fe(II), which is capable of dichlorination. On this basis, the DIRB-driven Fenton reaction can efficiently degrade chlorinated organics by continuously maintaining anoxic conditions to generate Fe(II) and oxic conditions to generate H2O2. DIRB can drive microbial fuel cells due to their electroactivity and have a good dechlorination capacity at low levels of energy consumption. The contribution of DIRB to the removal of pesticides, antibiotics and POPs is summarized. Then the DIRB electron transfer mechanism is discussed, which is core to their ability to dechlorinate. Finally, the prospect of future work on the removal of chlorine-containing organic pollutants by DIRB is presented, and the main challenges and further research directions are suggested.
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Affiliation(s)
- Hua Zhong
- Tianjin Key Laboratory of Clean Energy and Pollution Control, Hebei Engineering Research Center of Pollution Control in Power System, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, China
| | - Honghong Lyu
- Tianjin Key Laboratory of Clean Energy and Pollution Control, Hebei Engineering Research Center of Pollution Control in Power System, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, China.
| | - Zhiqiang Wang
- Tianjin Key Laboratory of Clean Energy and Pollution Control, Hebei Engineering Research Center of Pollution Control in Power System, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, China
| | - Jingya Tian
- Tianjin Key Laboratory of Clean Energy and Pollution Control, Hebei Engineering Research Center of Pollution Control in Power System, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, China
| | - Zhineng Wu
- Tianjin Key Laboratory of Clean Energy and Pollution Control, Hebei Engineering Research Center of Pollution Control in Power System, School of Energy and Environmental Engineering, Hebei University of Technology, Tianjin, 300401, China.
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5
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Guberman-Pfeffer MJ. Assessing Thermal Response of Redox Conduction for Anti-Arrhenius Kinetics in a Microbial Cytochrome Nanowire. J Phys Chem B 2022; 126:10083-10097. [PMID: 36417757 PMCID: PMC9743091 DOI: 10.1021/acs.jpcb.2c06822] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
A micrometers-long helical homopolymer of the outer-membrane cytochrome type S (OmcS) from Geobacter sulfurreducens is proposed to transport electrons to extracellular acceptors in an ancient respiratory strategy of biogeochemical and technological significance. OmcS surprisingly exhibits higher conductivity upon cooling (anti-Arrhenius kinetics), an effect previously attributed to H-bond restructuring and heme redox potential shifts. Herein, the temperature sensitivity of redox conductivity is more thoroughly examined with conventional and constant-redox and -pH molecular dynamics and quantum mechanics/molecular mechanics. A 30 K drop in temperature constituted a weak perturbation to electron transfer energetics, changing electronic couplings (⟨Hmn⟩), reaction free energies (ΔGmn), reorganization energies (λmn), and activation energies (Ea) by at most |0.002|, |0.050|, |0.120|, and |0.045| eV, respectively. Changes in ΔGmn reflected -0.07 ± 0.03 V shifts in redox potentials that were caused in roughly equal measure by altered electrostatic interactions with the solvent and protein. Changes in intraprotein H-bonding reproduced the earlier observations. Single-particle diffusion and multiparticle steady-state flux models, parametrized with Marcus theory rates, showed that biologically relevant incoherent hopping cannot qualitatively or quantitatively describe electrical conductivity measured by atomic force microscopy in filamentous OmcS. The discrepancy is attributed to differences between solution-phase simulations and solid-state measurements and the need to model intra- and intermolecular vibrations explicitly.
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Affiliation(s)
- Matthew J. Guberman-Pfeffer
- Department
of Molecular Biophysics and Biochemistry, Yale University, 333 Cedar St., New Haven, Connecticut06510, United States,Microbial
Sciences Institute, Yale University, 840 West Campus Drive, West Haven, Connecticut06516, United States,
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6
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Wang F, Chan CH, Suciu V, Mustafa K, Ammend M, Si D, Hochbaum AI, Egelman EH, Bond DR. Structure of Geobacter OmcZ filaments suggests extracellular cytochrome polymers evolved independently multiple times. eLife 2022; 11:e81551. [PMID: 36062910 PMCID: PMC9473688 DOI: 10.7554/elife.81551] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2022] [Accepted: 09/03/2022] [Indexed: 11/26/2022] Open
Abstract
While early genetic and low-resolution structural observations suggested that extracellular conductive filaments on metal-reducing organisms such as Geobacter were composed of type IV pili, it has now been established that bacterial c-type cytochromes can polymerize to form extracellular filaments capable of long-range electron transport. Atomic structures exist for two such cytochrome filaments, formed from the hexaheme cytochrome OmcS and the tetraheme cytochrome OmcE. Due to the highly conserved heme packing within the central OmcS and OmcE cores, and shared pattern of heme coordination between subunits, it has been suggested that these polymers have a common origin. We have now used cryo-electron microscopy (cryo-EM) to determine the structure of a third extracellular filament, formed from the Geobacter sulfurreducens octaheme cytochrome, OmcZ. In contrast to the linear heme chains in OmcS and OmcE from the same organism, the packing of hemes, heme:heme angles, and between-subunit heme coordination is quite different in OmcZ. A branched heme arrangement within OmcZ leads to a highly surface exposed heme in every subunit, which may account for the formation of conductive biofilm networks, and explain the higher measured conductivity of OmcZ filaments. This new structural evidence suggests that conductive cytochrome polymers arose independently on more than one occasion from different ancestral multiheme proteins.
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Affiliation(s)
- Fengbin Wang
- Department of Biochemistry and Molecular Genetics, University of Virginia School of MedicineCharlottesvilleUnited States
| | - Chi Ho Chan
- Department of Plant and Microbial Biology, and BioTechnology Institute, University of MinnesotaSt. PaulUnited States
| | - Victor Suciu
- Division of Computing and Software Systems, University of Washington BothellBothellUnited States
| | - Khawla Mustafa
- Department of Chemistry, University of California, IrvineIrvineUnited States
| | - Madeline Ammend
- Department of Plant and Microbial Biology, and BioTechnology Institute, University of MinnesotaSt. PaulUnited States
| | - Dong Si
- Division of Computing and Software Systems, University of Washington BothellBothellUnited States
| | - Allon I Hochbaum
- Department of Chemistry, University of California, IrvineIrvineUnited States
- Department of Materials Science and Engineering, University of CaliforniaIrvineUnited States
- Department of Molecular Biology and Biochemistry, University of CaliforniaIrvineUnited States
- Department of Chemical and Biomolecular Engineering, University of CaliforniaIrvineUnited States
| | - Edward H Egelman
- Department of Biochemistry and Molecular Genetics, University of Virginia School of MedicineCharlottesvilleUnited States
| | - Daniel R Bond
- Department of Plant and Microbial Biology, and BioTechnology Institute, University of MinnesotaSt. PaulUnited States
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7
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Cryo-EM structure of an extracellular Geobacter OmcE cytochrome filament reveals tetrahaem packing. Nat Microbiol 2022; 7:1291-1300. [PMID: 35798889 PMCID: PMC9357133 DOI: 10.1038/s41564-022-01159-z] [Citation(s) in RCA: 31] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2022] [Accepted: 05/23/2022] [Indexed: 12/11/2022]
Abstract
Electrically conductive appendages from the anaerobic bacterium Geobacter sulfurreducens were first observed two decades ago, with genetic and biochemical data suggesting that conductive fibres were type IV pili. Recently, an extracellular conductive filament of G. sulfurreducens was found to contain polymerized c-type cytochrome OmcS subunits, not pilin subunits. Here we report that G. sulfurreducens also produces a second, thinner appendage comprised of cytochrome OmcE subunits and solve its structure using cryo-electron microscopy at ~4.3 Å resolution. Although OmcE and OmcS subunits have no overall sequence or structural similarities, upon polymerization both form filaments that share a conserved haem packing arrangement in which haems are coordinated by histidines in adjacent subunits. Unlike OmcS filaments, OmcE filaments are highly glycosylated. In extracellular fractions from G. sulfurreducens, we detected type IV pili comprising PilA-N and -C chains, along with abundant B-DNA. OmcE is the second cytochrome filament to be characterized using structural and biophysical methods. We propose that there is a broad class of conductive bacterial appendages with conserved haem packing (rather than sequence homology) that enable long-distance electron transport to chemicals or other microbial cells.
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8
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Lewis DK, Oh Y, Mohanam LN, Wierzbicki M, Ing NL, Gu L, Hochbaum A, Wu R, Cui Q, Sharifzadeh S. Electronic Structure of de Novo Peptide ACC-Hex from First Principles. J Phys Chem B 2022; 126:4289-4298. [PMID: 35671500 DOI: 10.1021/acs.jpcb.2c02346] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Proteins are promising components for bioelectronic devices due in part to their biocompatibility, flexibility, and chemical diversity, which enable tuning of material properties. Indeed, an increasingly broad range of conductive protein supramolecular materials have been reported. However, due to their structural and environmental complexity, the electronic structure, and hence conductivity, of protein assemblies is not well-understood. Here we perform an all-atom simulation of the physical and electronic structure of a recently synthesized self-assembled peptide antiparallel coiled-coil hexamer, ACC-Hex. Using classical molecular dynamics and first-principles density functional theory, we examine the interactions of each peptide, containing phenylalanine residues along a hydrophobic core, to form a hexamer structure. We find that while frontier electronic orbitals are composed of phenylalanine, the peptide backbone and remaining residues, including those influenced by solvent, also contribute to the electronic density. Additionally, by studying dimers extracted from the hexamer, we show that structural distortions due to atomic fluctuations significantly impact the electronic structure of the peptide bundle. These results indicate that it is necessary to consider the full atomistic picture when using the electronic structure of supramolecular protein complexes to predict electronic properties.
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Affiliation(s)
- D Kirk Lewis
- Department of Electrical and Computer Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Younghoon Oh
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
| | - Luke Nambi Mohanam
- Department of Electrical and Computer Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Michał Wierzbicki
- Department of Materials Science and Engineering, University of California Irvine, Irvine, California 92697, United States
| | - Nicole L Ing
- Department of Materials Science and Engineering, University of California Irvine, Irvine, California 92697, United States
| | - Lei Gu
- Department of Physics, University of California Irvine, Irvine, California 92697, United States
| | - Allon Hochbaum
- Department of Materials Science and Engineering, University of California Irvine, Irvine, California 92697, United States
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Chemical and Biomolecular Engineering, University of California Irvine, Irvine, California 92697, United States
| | - Ruqian Wu
- Department of Physics, University of California Irvine, Irvine, California 92697, United States
| | - Qiang Cui
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
- Division of Materials Science and Engineering, Boston University, Boston, Massachusetts 02215, United States
| | - Sahar Sharifzadeh
- Department of Electrical and Computer Engineering, Boston University, Boston, Massachusetts 02215, United States
- Department of Chemistry, Boston University, Boston, Massachusetts 02215, United States
- Division of Materials Science and Engineering, Boston University, Boston, Massachusetts 02215, United States
- Department of Physics, Boston University, Boston, Massachusetts 02215, United States
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9
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Lovley DR. On the Existence of Pilin-Based Microbial Nanowires. Front Microbiol 2022; 13:872610. [PMID: 35733974 PMCID: PMC9207759 DOI: 10.3389/fmicb.2022.872610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2022] [Accepted: 05/17/2022] [Indexed: 11/13/2022] Open
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10
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Grebenko AK, Motovilov KA, Bubis AV, Nasibulin AG. Gentle Patterning Approaches toward Compatibility with Bio-Organic Materials and Their Environmental Aspects. SMALL (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2022; 18:e2200476. [PMID: 35315215 DOI: 10.1002/smll.202200476] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/06/2022] [Indexed: 06/14/2023]
Abstract
Advances in material science, bioelectronic, and implantable medicine combined with recent requests for eco-friendly materials and technologies inevitably formulate new challenges for nano- and micropatterning techniques. Overall, the importance of creating micro- and nanostructures is motivated by a large manifold of fundamental and applied properties accessible only at the nanoscale. Lithography is a crucial family of fabrication methods to create prototypes and produce devices on an industrial scale. The pure trend in the miniaturization of critical electronic semiconducting components has been recently enhanced by implementing bio-organic systems in electronics. So far, significant efforts have been made to find novel lithographic approaches and develop old ones to reach compatibility with delicate bio-organic systems and minimize the impact on the environment. Herein, such delicate materials and sophisticated patterning techniques are briefly reviewed.
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Affiliation(s)
- Artem K Grebenko
- Skolkovo Institute of Science and Technology, Nobel str. 3, Moscow, 121205, Russia
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology, Institute Lane 9, Dolgoprudny, 141701, Russia
| | - Konstantin A Motovilov
- Center for Photonics and 2D Materials, Moscow Institute of Physics and Technology, Institute Lane 9, Dolgoprudny, 141701, Russia
| | - Anton V Bubis
- Skolkovo Institute of Science and Technology, Nobel str. 3, Moscow, 121205, Russia
- Institute of Solid State Physics, Russian Academy of Sciences, 2 Academician Ossipyan str., Chernogolovka, 142432, Russia
| | - Albert G Nasibulin
- Skolkovo Institute of Science and Technology, Nobel str. 3, Moscow, 121205, Russia
- Department of Chemistry and Materials Science, Aalto University, P.O. Box 16100, Aalto, FI-00076, Finland
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11
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McCuskey SR, Chatsirisupachai J, Zeglio E, Parlak O, Panoy P, Herland A, Bazan GC, Nguyen TQ. Current Progress of Interfacing Organic Semiconducting Materials with Bacteria. Chem Rev 2021; 122:4791-4825. [PMID: 34714064 DOI: 10.1021/acs.chemrev.1c00487] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Microbial bioelectronics require interfacing microorganisms with electrodes. The resulting abiotic/biotic platforms provide the basis of a range of technologies, including energy conversion and diagnostic assays. Organic semiconductors (OSCs) provide a unique strategy to modulate the interfaces between microbial systems and external electrodes, thereby improving the performance of these incipient technologies. In this review, we explore recent progress in the field on how OSCs, and related materials capable of charge transport, are being used within the context of microbial systems, and more specifically bacteria. We begin by examining the electrochemical communication modes in bacteria and the biological basis for charge transport. Different types of synthetic organic materials that have been designed and synthesized for interfacing and interrogating bacteria are discussed next, followed by the most commonly used characterization techniques for evaluating transport in microbial, synthetic, and hybrid systems. A range of applications is subsequently examined, including biological sensors and energy conversion systems. The review concludes by summarizing what has been accomplished so far and suggests future design approaches for OSC bioelectronics materials and technologies that hybridize characteristic properties of microbial and OSC systems.
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Affiliation(s)
- Samantha R McCuskey
- Department of Chemistry, National University of Singapore, Singapore 119077, Singapore
| | - Jirat Chatsirisupachai
- Center for Polymers and Organic Solids & Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, United States.,Department of Materials Science and Engineering, School of Molecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology, Wangchan, Rayong 21210, Thailand
| | - Erica Zeglio
- Division of Micro and Nanosystems, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm 17177, Sweden
| | - Onur Parlak
- Dermatology and Venereology Division, Department of Medicine(Solna), Karolinska Institute, Stockholm 17177, Sweden.,AIMES Center of Integrated Medical and Engineering Sciences, Department of Neuroscience, Karolinska Institute, Stockholm 17177, Sweden
| | - Patchareepond Panoy
- Center for Polymers and Organic Solids & Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, United States.,Department of Materials Science and Engineering, School of Molecular Science and Engineering, Vidyasirimedhi Institute of Science and Technology, Wangchan, Rayong 21210, Thailand
| | - Anna Herland
- Division of Micro and Nanosystems, School of Electrical Engineering and Computer Science, KTH Royal Institute of Technology, Stockholm 17177, Sweden.,AIMES Center of Integrated Medical and Engineering Sciences, Department of Neuroscience, Karolinska Institute, Stockholm 17177, Sweden
| | - Guillermo C Bazan
- Department of Chemistry, National University of Singapore, Singapore 119077, Singapore
| | - Thuc-Quyen Nguyen
- Center for Polymers and Organic Solids & Department of Chemistry and Biochemistry, University of California, Santa Barbara, California 93106, United States
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12
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Mezzina Freitas LP, Feliciano GT. Atomic and Electronic Structure of Pilus from Geobacter sulfurreducens through QM/MM Calculations: Evidence for Hole Transfer in Aromatic Residues. J Phys Chem B 2021; 125:8305-8312. [PMID: 34292748 DOI: 10.1021/acs.jpcb.1c01185] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Long-range electron transport has been widely and experimentally reported in Geobacter sulfurreducens pilus protein. However, a better understanding of the still undefined molecular arrangement can bring to light the role of key residues in this phenomenon. We propose a theoretical investigation of the electronic structure of aromatic residue groups in the protein through a classical molecular dynamics (MD) simulation, followed by a quantum mechanics/molecular mechanics (QM/MM) electronic study of different frames sampled from MD trajectories, an electrostatic potential and electron density analysis, an analysis of the density of states, and an investigation of hole formation through Dyson orbital calculations. We observe a highest occupied molecular orbital-lowest unoccupied molecular orbital (HOMO-LUMO) energy gap in the ranges of 1.4-2.3 eV and 2.9-3.3 eV and a less intense dipole moment along the aromatic residues in the presence of water in comparison to the system in vacuum. HOMO and LUMO electron densities highlight the occupation of one tyrosine residue in every representation for HOMO and a delocalization along two to three rings for LUMO. The results show how the electronic structure of the aromatic residues is sensitive to the ring arrangement and the surrounding environment. In our study, we observe that slight rearrangements in the fiber geometry can create temporary conditions for hole transfer.
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Affiliation(s)
- Luis Paulo Mezzina Freitas
- Institute of Chemistry, Department of Engineering, Physics and Mathematics, São Paulo State University, Prof. Francisco Degni 55, 14800-060 Araraquara, Brazil
| | - Gustavo Troiano Feliciano
- Institute of Chemistry, Department of Engineering, Physics and Mathematics, São Paulo State University, Prof. Francisco Degni 55, 14800-060 Araraquara, Brazil
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13
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Casella A, Panitch A, Leach JK. Endogenous Electric Signaling as a Blueprint for Conductive Materials in Tissue Engineering. Bioelectricity 2021; 3:27-41. [PMID: 34476376 PMCID: PMC8370482 DOI: 10.1089/bioe.2020.0027] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023] Open
Abstract
Bioelectricity plays an important role in cell behavior and tissue modulation, but is understudied in tissue engineering research. Endogenous electrical signaling arises from the transmembrane potential inherent to all cells and contributes to many cell behaviors, including migration, adhesion, proliferation, and differentiation. Electrical signals are also involved in tissue development and repair. Synthetic and natural conductive materials are under investigation for leveraging endogenous electrical signaling cues in tissue engineering applications due to their ability to direct cell differentiation, aid in maturing electroactive cell types, and promote tissue functionality. In this review, we provide a brief overview of bioelectricity and its impact on cell behavior, report recent literature using conductive materials for tissue engineering, and discuss opportunities within the field to improve experimental design when using conductive substrates.
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Affiliation(s)
- Alena Casella
- Department of Biomedical Engineering, University of California, Davis, Davis, California, USA
| | - Alyssa Panitch
- Department of Biomedical Engineering, University of California, Davis, Davis, California, USA
- Department of Surgery and UC Davis Health, Sacramento, California, USA
| | - J. Kent Leach
- Department of Biomedical Engineering, University of California, Davis, Davis, California, USA
- Department of Orthopaedic Surgery, UC Davis Health, Sacramento, California, USA
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14
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Tseng CP, Silberg JJ, Bennett GN, Verduzco R. 100th Anniversary of Macromolecular Science Viewpoint: Soft Materials for Microbial Bioelectronics. ACS Macro Lett 2020; 9:1590-1603. [PMID: 35617074 DOI: 10.1021/acsmacrolett.0c00573] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Bioelectronics brings together the fields of biology and microelectronics to create multifunctional devices with the potential to address longstanding technological challenges and change our way of life. Microbial electrochemical devices are a growing subset of bioelectronic devices that incorporate naturally occurring or synthetically engineered microbes into electronic devices and have broad applications including energy harvesting, chemical production, water remediation, and environmental and health monitoring. The goal of this Viewpoint is to highlight recent advances and ongoing challenges in the rapidly developing field of microbial bioelectronic devices, with an emphasis on materials challenges. We provide an overview of microbial bioelectronic devices, discuss the biotic-abiotic interface in these devices, and then present recent advances and ongoing challenges in materials related to electron transfer across the abiotic-biotic interface, microbial adhesion, redox signaling, electronic amplification, and device miniaturization. We conclude with a summary and perspective of the field of microbial bioelectronics.
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Affiliation(s)
- Chia-Ping Tseng
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
| | - Jonathan J. Silberg
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
- Department of Biosciences, Rice University, Houston, Texas 77005, United States
- Department of Bioengineering, Rice University, Houston, Texas 77005, United States
| | - George N. Bennett
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
- Department of Biosciences, Rice University, Houston, Texas 77005, United States
| | - Rafael Verduzco
- Department of Chemical and Biomolecular Engineering, Rice University, Houston, Texas 77005, United States
- Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
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15
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Intrinsic electrical properties of cable bacteria reveal an Arrhenius temperature dependence. Sci Rep 2020; 10:19798. [PMID: 33188289 PMCID: PMC7666173 DOI: 10.1038/s41598-020-76671-5] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2020] [Accepted: 10/30/2020] [Indexed: 11/27/2022] Open
Abstract
Filamentous cable bacteria exhibit long-range electron transport over centimetre-scale distances, which takes place in a parallel fibre structure with high electrical conductivity. Still, the underlying electron transport mechanism remains undisclosed. Here we determine the intrinsic electrical properties of the conductive fibres in cable bacteria from a material science perspective. Impedance spectroscopy provides an equivalent electrical circuit model, which demonstrates that dry cable bacteria filaments function as resistive biological wires. Temperature-dependent electrical characterization reveals that the conductivity can be described with an Arrhenius-type relation over a broad temperature range (− 195 °C to + 50 °C), demonstrating that charge transport is thermally activated with a low activation energy of 40–50 meV. Furthermore, when cable bacterium filaments are utilized as the channel in a field-effect transistor, they show n-type transport suggesting that electrons are the charge carriers. Electron mobility values are ~ 0.1 cm2/Vs at room temperature and display a similar Arrhenius temperature dependence as conductivity. Overall, our results demonstrate that the intrinsic electrical properties of the conductive fibres in cable bacteria are comparable to synthetic organic semiconductor materials, and so they offer promising perspectives for both fundamental studies of biological electron transport as well as applications in microbial electrochemical technologies and bioelectronics.
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16
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Roy S, Xie O, Dorval Courchesne N. Challenges in engineering conductive protein fibres: Disentangling the knowledge. CAN J CHEM ENG 2020. [DOI: 10.1002/cjce.23836] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Sophia Roy
- Department of Chemical Engineering McGill University Montréal Québec Canada
| | - Oliver Xie
- Department of Chemical Engineering McGill University Montréal Québec Canada
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17
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Chen YX, Ing NL, Wang F, Xu D, Sloan NB, Lam NT, Winter DL, Egelman EH, Hochbaum AI, Clark DS, Glover DJ. Structural Determination of a Filamentous Chaperone to Fabricate Electronically Conductive Metalloprotein Nanowires. ACS NANO 2020; 14:6559-6569. [PMID: 32347705 PMCID: PMC8034818 DOI: 10.1021/acsnano.9b09405] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
The transfer of electrons through protein complexes is central to cellular respiration. Exploiting proteins for charge transfer in a controllable fashion has the potential to revolutionize the integration of biological systems and electronic devices. Here we characterize the structure of an ultrastable protein filament and engineer the filament subunits to create electronically conductive nanowires under aqueous conditions. Cryoelectron microscopy was used to resolve the helical structure of gamma-prefoldin, a filamentous protein from a hyperthermophilic archaeon. Conjugation of tetra-heme c3-type cytochromes along the longitudinal axis of the filament created nanowires capable of long-range electron transfer. Electrochemical transport measurements indicated networks of the nanowires capable of conducting current between electrodes at the redox potential of the cytochromes. Functionalization of these highly engineerable nanowires with other molecules, such as redox enzymes, may be useful for bioelectronic applications.
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Affiliation(s)
- Yun X. Chen
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
| | - Nicole L. Ing
- Department of Materials Science and Engineering, University of California, Irvine, CA 92697, USA
| | - Fengbin Wang
- Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA
| | - Dawei Xu
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
| | - Nancy B. Sloan
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
| | - Nga T. Lam
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
| | - Daniel L. Winter
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
| | - Edward H. Egelman
- Department of Biochemistry and Molecular Genetics, University of Virginia, Charlottesville, VA 22908, USA
| | - Allon I. Hochbaum
- Department of Materials Science and Engineering, University of California, Irvine, CA 92697, USA
- Department of Chemistry, University of California, Irvine, CA 92697, USA
- Department of Chemical and Biomolecular Engineering, University of California, Irvine, CA 92697, USA
| | - Douglas S. Clark
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, CA 94720, USA
- Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720, USA
| | - Dominic J. Glover
- School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW 2052, Australia
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18
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Wang F, Gu Y, O'Brien JP, Yi SM, Yalcin SE, Srikanth V, Shen C, Vu D, Ing NL, Hochbaum AI, Egelman EH, Malvankar NS. Structure of Microbial Nanowires Reveals Stacked Hemes that Transport Electrons over Micrometers. Cell 2020; 177:361-369.e10. [PMID: 30951668 DOI: 10.1016/j.cell.2019.03.029] [Citation(s) in RCA: 271] [Impact Index Per Article: 67.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2018] [Revised: 01/14/2019] [Accepted: 03/11/2019] [Indexed: 12/21/2022]
Abstract
Long-range (>10 μm) transport of electrons along networks of Geobacter sulfurreducens protein filaments, known as microbial nanowires, has been invoked to explain a wide range of globally important redox phenomena. These nanowires were previously thought to be type IV pili composed of PilA protein. Here, we report a 3.7 Å resolution cryoelectron microscopy structure, which surprisingly reveals that, rather than PilA, G. sulfurreducens nanowires are assembled by micrometer-long polymerization of the hexaheme cytochrome OmcS, with hemes packed within ∼3.5-6 Å of each other. The inter-subunit interfaces show unique structural elements such as inter-subunit parallel-stacked hemes and axial coordination of heme by histidines from neighboring subunits. Wild-type OmcS filaments show 100-fold greater conductivity than other filaments from a ΔomcS strain, highlighting the importance of OmcS to conductivity in these nanowires. This structure explains the remarkable capacity of soil bacteria to transport electrons to remote electron acceptors for respiration and energy sharing.
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Affiliation(s)
- Fengbin Wang
- Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA
| | - Yangqi Gu
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular, Cellular & Developmental Biology, Yale University, New Haven, CT 06511, USA
| | - J Patrick O'Brien
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA
| | - Sophia M Yi
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA
| | - Sibel Ebru Yalcin
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA
| | - Vishok Srikanth
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA
| | - Cong Shen
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Microbial Pathogenesis, Yale University, New Haven, CT 06511, USA
| | - Dennis Vu
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA
| | - Nicole L Ing
- Department of Materials Science & Engineering, University of California, Irvine, Irvine, CA 92697, USA
| | - Allon I Hochbaum
- Department of Materials Science & Engineering, University of California, Irvine, Irvine, CA 92697, USA; Department of Chemistry, University of California, Irvine, Irvine, CA 92697, USA.
| | - Edward H Egelman
- Department of Biochemistry and Molecular Genetics, University of Virginia School of Medicine, Charlottesville, VA 22908, USA.
| | - Nikhil S Malvankar
- Microbial Sciences Institute, Yale University, New Haven, CT 06516, USA; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06511, USA.
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Shu C, Zhu Q, Xiao K, Hou Y, Ma H, Ma J, Sun X. Direct Extracellular Electron Transfer of the Geobacter sulfurreducens Pili Relevant to Interaromatic Distances. BIOMED RESEARCH INTERNATIONAL 2019; 2019:6151587. [PMID: 31886232 PMCID: PMC6925702 DOI: 10.1155/2019/6151587] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2019] [Revised: 08/27/2019] [Accepted: 08/31/2019] [Indexed: 01/05/2023]
Abstract
Microorganisms can transfer electrons directly to extracellular acceptors, during which organic compounds are oxidized to carbon dioxide. One of these microbes, Geobacter sulfurreducens, is well known for the "metallic-like" conductivity of its type IV pili. However, there is no consensus on what the mechanism for electron transfer along these conductive pili is. Based on the aromatic distances and orientations of our predicted models, the mechanism of electron transfer in the Geobacter sulfurreducens (GS) pili was explored by quantum chemical calculations with Marcus theory of electron transfer reactions. Three aromatic residues from the N-terminal α-helix of the GS pilin subunit are packed together, resulting in a continuous pi-pi interaction chain. The theoretical conductance (4.69 μS/3.85 μS) of the predicted models is very similar to that in the experiments reported recently (3.40 μS). These findings offer a new concept that the GS pili belongs to a new class of proteins that can transport electrons through pi-pi interaction between aromatic residues and also provide a valuable tool for guiding further researches of these conductive pili, to investigate their roles in biogeochemical cycling, and potential applications in biomaterials, bioelectronics, and bioenergy.
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Affiliation(s)
- Chuanjun Shu
- State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China
- Department of Bioinformatics, School of Biomedical Engineering and Informatics, Nanjing Medical University, Nanjing 211166, China
| | - Qiang Zhu
- State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering and Key Laboratory of Mesoscopic Chemistry of MOE, Nanjing University, Nanjing 210023, China
| | - Ke Xiao
- State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China
| | - Yue Hou
- State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China
| | - Haibo Ma
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering and Key Laboratory of Mesoscopic Chemistry of MOE, Nanjing University, Nanjing 210023, China
| | - Jing Ma
- Institute of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering and Key Laboratory of Mesoscopic Chemistry of MOE, Nanjing University, Nanjing 210023, China
| | - Xiao Sun
- State Key Laboratory of Bioelectronics, School of Biological Science and Medical Engineering, Southeast University, Nanjing 210096, China
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20
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Abstract
The study of electrically conductive protein nanowires in Geobacter sulfurreducens has led to new concepts for long-range extracellular electron transport, as well as for the development of sustainable conductive materials and electronic devices with novel functions. Until recently, electrically conductive pili (e-pili), assembled from the PilA pilin monomer, were the only known Geobacter protein nanowires. However, filaments comprised of the multi-heme c-type cytochrome, OmcS, are present in some preparations of G. sulfurreducens outer-surface proteins. The purpose of this review is to evaluate the available evidence on the in vivo expression of e-pili and OmcS filaments and their biological function. Abundant literature demonstrates that G. sulfurreducens expresses e-pili, which are required for long-range electron transport to Fe (III) oxides and through conductive biofilms. In contrast, there is no definitive evidence yet that wild-type G. sulfurreducens express long filaments of OmcS extending from the cells, and deleting the gene for OmcS actually increases biofilm conductivity. The literature does not support the concern that many previous studies on e-pili were mistakenly studying OmcS filaments. For example, heterologous expression of the aromatic-rich pilin monomer of Geobacter metallireducens in G. sulfurreducens increases the conductivity of individual nanowires more than 5,000-fold, whereas expression of an aromatic-poor pilin reduced conductivity more than 1,000-fold. This more than million-fold range in nanowire conductivity was achieved while maintaining the 3-nm diameter characteristic of e-pili. Purification methods that eliminate all traces of OmcS yield highly conductive e-pili, as does heterologous expression of the e-pilin monomer in microbes that do not produce OmcS or any other outer-surface cytochromes. Future studies of G. sulfurreducens expression of protein nanowires need to be cognizant of the importance of maintaining environmentally relevant growth conditions because artificial laboratory culture conditions can rapidly select against e-pili expression. Principles derived from the study of e-pili have enabled identification of non-cytochrome protein nanowires in diverse bacteria and archaea. A similar search for cytochrome appendages is warranted. Both e-pili and OmcS filaments offer design options for the synthesis of protein-based "green" electronics, which may be the primary driving force for the study of these structures in the near future.
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Affiliation(s)
- Derek R. Lovley
- Department of Microbiology, Institute for Applied Life Sciences, University of Massachusetts, Amherst, MA, United States
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Ueki T, Walker DJ, Tremblay PL, Nevin KP, Ward JE, Woodard TL, Nonnenmann SS, Lovley DR. Decorating the Outer Surface of Microbially Produced Protein Nanowires with Peptides. ACS Synth Biol 2019; 8:1809-1817. [PMID: 31298834 DOI: 10.1021/acssynbio.9b00131] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The potential applications of electrically conductive protein nanowires (e-PNs) harvested from Geobacter sulfurreducens might be greatly expanded if the outer surface of the wires could be modified to confer novel sensing capabilities or to enhance binding to other materials. We developed a simple strategy for functionalizing e-PNs with surface-exposed peptides. The G. sulfurreducens gene for the monomer that assembles into e-PNs was modified to add peptide tags at the carboxyl terminus of the monomer. Strains of G. sulfurreducens were constructed that fabricated synthetic e-PNs with a six-histidine "His-tag" or both the His-tag and a nine-peptide "HA-tag" exposed on the outer surface. Addition of the peptide tags did not diminish e-PN conductivity. The abundance of HA-tag in e-PNs was controlled by placing expression of the gene for the synthetic monomer with the HA-tag under transcriptional regulation. These studies suggest broad possibilities for tailoring e-PN properties for diverse applications.
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Affiliation(s)
- Toshiyuki Ueki
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
- Institute for Applied Life Sciences, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - David J.F. Walker
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
- Institute for Applied Life Sciences, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - Pier-Luc Tremblay
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - Kelly P. Nevin
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - Joy E. Ward
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - Trevor L. Woodard
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - Stephen S. Nonnenmann
- Institute for Applied Life Sciences, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
- Department of Mechanical and Industrial Engineering, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
| | - Derek R. Lovley
- Department of Microbiology, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
- Institute for Applied Life Sciences, University of Massachusetts—Amherst, Amherst, Massachusetts 01003, United States
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Reaching full potential: bioelectrochemical systems for storing renewable energy in chemical bonds. Curr Opin Biotechnol 2019; 57:66-72. [DOI: 10.1016/j.copbio.2019.01.018] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 11/16/2018] [Accepted: 01/29/2019] [Indexed: 12/11/2022]
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Reguera G. Microbial nanowires and electroactive biofilms. FEMS Microbiol Ecol 2019; 94:5000162. [PMID: 29931163 DOI: 10.1093/femsec/fiy086] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Accepted: 05/11/2018] [Indexed: 12/14/2022] Open
Abstract
Geobacter bacteria are the only microorganisms known to produce conductive appendages or pili to electronically connect cells to extracellular electron acceptors such as iron oxide minerals and uranium. The conductive pili also promote cell-cell aggregation and the formation of electroactive biofilms. The hallmark of these electroactive biofilms is electronic heterogeneity, mediated by coordinated interactions between the conductive pili and matrix-associated cytochromes. Collectively, the matrix-associated electron carriers discharge respiratory electrons from cells in multilayered biofilms to electron-accepting surfaces such as iron oxide coatings and electrodes poised at a metabolically oxidizable potential. The presence of pilus nanowires in the electroactive biofilms also promotes the immobilization and reduction of soluble metals, even when present at toxic concentrations. This review summarizes current knowledge about the composition of the electroactive biofilm matrix and the mechanisms that allow the wired Geobacter biofilms to generate electrical currents and participate in metal redox transformations.
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Affiliation(s)
- Gemma Reguera
- Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI 48824, USA
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24
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Li D, Li J, Liu D, Ma X, Cheng L, Li W, Qian C, Mu Y, Yu H. Potential regulates metabolism and extracellular respiration of electroactiveGeobacterbiofilm. Biotechnol Bioeng 2019; 116:961-971. [DOI: 10.1002/bit.26928] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 11/26/2018] [Accepted: 01/17/2019] [Indexed: 01/02/2023]
Affiliation(s)
- Dao‐Bo Li
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Jie Li
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Dong‐Feng Liu
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Xin Ma
- School of Life Sciences, University of Science and Technology of ChinaHefei China
| | - Lei Cheng
- School of Life Sciences, University of Science and Technology of ChinaHefei China
| | - Wen‐Wei Li
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Chen Qian
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Yang Mu
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
| | - Han‐Qing Yu
- Department of Applied ChemistryUniversity of Science and Technology of ChinaHefei China
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Lai F, Wang BB, Zhang P. Enhanced positive temperature coefficient in amorphous PS/CSPE-MWCNT composites with low percolation threshold. J Appl Polym Sci 2019; 136:47053. [DOI: 10.1002/app.47053] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Affiliation(s)
- Fang Lai
- School of Chemistry and Chemical Engineering; Southwest University; Chongqing 400715 People's Republic of China
| | - Bin-Bin Wang
- School of Chemistry and Chemical Engineering; Southwest University; Chongqing 400715 People's Republic of China
| | - Peng Zhang
- School of Chemistry and Chemical Engineering; Southwest University; Chongqing 400715 People's Republic of China
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26
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Motovilov KA, Grinenko V, Savinov M, Gagkaeva ZV, Kadyrov LS, Pronin AA, Bedran ZV, Zhukova ES, Mostert AB, Gorshunov BP. Redox chemistry in the pigment eumelanin as a function of temperature using broadband dielectric spectroscopy. RSC Adv 2019; 9:3857-3867. [PMID: 35518099 PMCID: PMC9060503 DOI: 10.1039/c8ra09093a] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2018] [Accepted: 01/22/2019] [Indexed: 12/12/2022] Open
Abstract
We demonstrate on synthetic eumelanin that biomolecular conductivity models should account for temperature and hydration effects coherently.
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Affiliation(s)
| | - V. Grinenko
- Institute for Solid State and Materials Physics
- TU Dresden
- Dresden
- Germany
- Institute for Metallic Materials
| | - M. Savinov
- Institute of Physics AS CR
- Praha 8
- Czech Republic
| | | | | | - A. A. Pronin
- Prokhorov General Physics Institute of the Russian Academy of Sciences
- Moscow
- Russia
| | - Z. V. Bedran
- Moscow Institute of Physics and Technology
- Russia
| | - E. S. Zhukova
- Moscow Institute of Physics and Technology
- Russia
- Prokhorov General Physics Institute of the Russian Academy of Sciences
- Moscow
- Russia
| | | | - B. P. Gorshunov
- Moscow Institute of Physics and Technology
- Russia
- Prokhorov General Physics Institute of the Russian Academy of Sciences
- Moscow
- Russia
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27
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Zhang X, Prévoteau A, Louro RO, Paquete CM, Rabaey K. Periodic polarization of electroactive biofilms increases current density and charge carriers concentration while modifying biofilm structure. Biosens Bioelectron 2018; 121:183-191. [DOI: 10.1016/j.bios.2018.08.045] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 08/19/2018] [Accepted: 08/20/2018] [Indexed: 10/28/2022]
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28
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Electron transfer and transport through multi-heme proteins: recent progress and future directions. Curr Opin Chem Biol 2018; 47:24-31. [DOI: 10.1016/j.cbpa.2018.06.021] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2018] [Accepted: 06/24/2018] [Indexed: 12/20/2022]
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Ing NL, El-Naggar MY, Hochbaum AI. Going the Distance: Long-Range Conductivity in Protein and Peptide Bioelectronic Materials. J Phys Chem B 2018; 122:10403-10423. [DOI: 10.1021/acs.jpcb.8b07431] [Citation(s) in RCA: 83] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
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30
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Xu S, Barrozo A, Tender LM, Krylov AI, El-Naggar MY. Multiheme Cytochrome Mediated Redox Conduction through Shewanella oneidensis MR-1 Cells. J Am Chem Soc 2018; 140:10085-10089. [DOI: 10.1021/jacs.8b05104] [Citation(s) in RCA: 61] [Impact Index Per Article: 10.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Shuai Xu
- Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089, United States
| | - Alexandre Barrozo
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Leonard M. Tender
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, D.C. 20375, United States
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
| | - Mohamed Y. El-Naggar
- Department of Physics and Astronomy, University of Southern California, Los Angeles, California 90089, United States
- Department of Chemistry, University of Southern California, Los Angeles, California 90089, United States
- Department of Biological Sciences, University of Southern California, Los Angeles, California 91030, United States
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31
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Chong GW, Karbelkar AA, El-Naggar MY. Nature's conductors: what can microbial multi-heme cytochromes teach us about electron transport and biological energy conversion? Curr Opin Chem Biol 2018; 47:7-17. [PMID: 30015234 DOI: 10.1016/j.cbpa.2018.06.007] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Accepted: 06/04/2018] [Indexed: 10/28/2022]
Abstract
Microorganisms can acquire energy from the environment by extending their electron transport chains to external solid electron donors or acceptors. This process, known as extracellular electron transfer (EET), is now being heavily pursued for wiring microbes to electrodes in bioelectrochemical renewable energy technologies. Recent studies highlight the crucial role of multi-heme cytochromes in facilitating biotic-abiotic EET both for cellular electron export and uptake. Here we explore progress in understanding the range and function of these biological electron conduits in the context of fuel-to-electricity and electricity-to-bioproduct conversion. We also highlight emerging topics, including the role of multi-heme cytochromes in inter-species electron transfer and in inspiring the design and synthesis of a new generation of protein-based bioelectronic components.
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Affiliation(s)
- Grace W Chong
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-2910, USA
| | - Amruta A Karbelkar
- Department of Chemistry, University of Southern California, Los Angeles, CA 90089-1062, USA
| | - Mohamed Y El-Naggar
- Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-2910, USA; Department of Chemistry, University of Southern California, Los Angeles, CA 90089-1062, USA; Department of Physics and Astronomy, University of Southern California, Los Angeles, CA 90089-0484, USA.
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32
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Yates M, Strycharz-Glaven S, Golden J, Roy J, Tsoi S, Erickson J, El-Naggar M, Calabrese Barton S, Tender L. Characterizing Electron Transport through Living Biofilms. J Vis Exp 2018. [PMID: 29912193 DOI: 10.3791/54671] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Here we demonstrate the method of electrochemical gating used to characterize electrical conductivity of electrode-grown microbial biofilms under physiologically relevant conditions.1 These measurements are performed on living biofilms in aqueous medium using source and drain electrodes patterned on a glass surface in a specialized configuration referred to as an interdigitated electrode (IDA) array. A biofilm is grown that extends across the gap connecting the source and drain. Potentials are applied to the electrodes (ES and ED) generating a source-drain current (ISD) through the biofilm between the electrodes. The dependency of electrical conductivity on gate potential (the average of the source and drain potentials, EG = [ED + ES]/2) is determined by systematically changing the gate potential and measuring the resulting source-drain current. The dependency of conductivity on gate potential provides mechanistic information about the extracellular electron transport process underlying the electrical conductivity of the specific biofilm under investigation. The electrochemical gating measurement method described here is based directly on that used by M. S. Wrighton2,3 and colleagues and R. W. Murray4,5,6 and colleagues in the 1980's to investigate thin film conductive polymers.
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Affiliation(s)
- Matthew Yates
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory
| | | | - Joel Golden
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory
| | - Jared Roy
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory; George Mason University
| | | | - Jeffrey Erickson
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory
| | - Mohamed El-Naggar
- Departments of Physics, Biological Sciences, and Chemistry, University of Southern California
| | | | - Leonard Tender
- Center for Bio/Molecular Science and Engineering, Naval Research Laboratory;
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33
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Reguera G. Harnessing the power of microbial nanowires. Microb Biotechnol 2018; 11:979-994. [PMID: 29806247 PMCID: PMC6201914 DOI: 10.1111/1751-7915.13280] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 04/13/2018] [Accepted: 04/22/2018] [Indexed: 12/13/2022] Open
Abstract
The reduction of iron oxide minerals and uranium in model metal reducers in the genus Geobacter is mediated by conductive pili composed primarily of a structurally divergent pilin peptide that is otherwise recognized, processed and assembled in the inner membrane by a conserved Type IVa pilus apparatus. Electronic coupling among the peptides is promoted upon assembly, allowing the discharge of respiratory electrons at rates that greatly exceed the rates of cellular respiration. Harnessing the unique properties of these conductive appendages and their peptide building blocks in metal bioremediation will require understanding of how the pilins assemble to form a protein nanowire with specialized sites for metal immobilization. Also important are insights into how cells assemble the pili to make an electroactive matrix and grow on electrodes as biofilms that harvest electrical currents from the oxidation of waste organic substrates. Genetic engineering shows promise to modulate the properties of the peptide building blocks, protein nanowires and current‐harvesting biofilms for various applications. This minireview discusses what is known about the pilus material properties and reactions they catalyse and how this information can be harnessed in nanotechnology, bioremediation and bioenergy applications.
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Affiliation(s)
- Gemma Reguera
- Department of Microbiology and Molecular Genetics, Michigan State University, 567 Wilson Rd., Rm. 6190, East Lansing, MI, 48824, USA
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34
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Guterman T, Gazit E. Toward peptide-based bioelectronics: reductionist design of conductive pili mimetics. ACTA ACUST UNITED AC 2018; 1:131-137. [PMID: 30627439 DOI: 10.2217/bem-2018-0003] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Proteins and peptides possess inherent properties which can benefit medical devices that interact with electro-responsive tissues. However, proteinaceous materials are typically electrically insulating and hence are not suitable to be utilized as conductive elements in electromedical and other bio-interfacing devices. The discovery of intrinsic electrical conductivity in bacterial protein nanofibers, termed e-pili, could give rise to mimetic reductionist design and thus provide an opportunity to improve the function of existing electromedical devices. In this Special Report we review key aspects concerning the properties of e-pili and present the ongoing effort toward the design of mimetic conductive nanostructures. We highlight the advantages of using self-assembling peptides as building blocks for this purpose and discuss the prospect of the envisioned mimetic nanostructures.
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Affiliation(s)
- Tom Guterman
- Department of Molecular Microbiology & Biotechnology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Ehud Gazit
- Department of Molecular Microbiology & Biotechnology, George S Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 6997801, Israel.,Department of Materials Science & Engineering, Iby & Aladar Fleischman Faculty of Engineering, Tel Aviv University, Tel Aviv 6997801, Israel
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35
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Microbial nanowires - Electron transport and the role of synthetic analogues. Acta Biomater 2018; 69:1-30. [PMID: 29357319 DOI: 10.1016/j.actbio.2018.01.007] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2017] [Revised: 01/07/2018] [Accepted: 01/09/2018] [Indexed: 02/07/2023]
Abstract
Electron transfer is central to cellular life, from photosynthesis to respiration. In the case of anaerobic respiration, some microbes have extracellular appendages that can be utilised to transport electrons over great distances. Two model organisms heavily studied in this arena are Shewanella oneidensis and Geobacter sulfurreducens. There is some debate over how, in particular, the Geobacter sulfurreducens nanowires (formed from pilin nanofilaments) are capable of achieving the impressive feats of natural conductivity that they display. In this article, we outline the mechanisms of electron transfer through delocalised electron transport, quantum tunnelling, and hopping as they pertain to biomaterials. These are described along with existing examples of the different types of conductivity observed in natural systems such as DNA and proteins in order to provide context for understanding the complexities involved in studying the electron transport properties of these unique nanowires. We then introduce some synthetic analogues, made using peptides, which may assist in resolving this debate. Microbial nanowires and the synthetic analogues thereof are of particular interest, not just for biogeochemistry, but also for the exciting potential bioelectronic and clinical applications as covered in the final section of the review. STATEMENT OF SIGNIFICANCE Some microbes have extracellular appendages that transport electrons over vast distances in order to respire, such as the dissimilatory metal-reducing bacteria Geobacter sulfurreducens. There is significant debate over how G. sulfurreducens nanowires are capable of achieving the impressive feats of natural conductivity that they display: This mechanism is a fundamental scientific challenge, with important environmental and technological implications. Through outlining the techniques and outcomes of investigations into the mechanisms of such protein-based nanofibrils, we provide a platform for the general study of the electronic properties of biomaterials. The implications are broad-reaching, with fundamental investigations into electron transfer processes in natural and biomimetic materials underway. From these studies, applications in the medical, energy, and IT industries can be developed utilising bioelectronics.
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Li C, Lesnik KL, Liu H. Conductive properties of methanogenic biofilms. Bioelectrochemistry 2018; 119:220-226. [DOI: 10.1016/j.bioelechem.2017.10.006] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2017] [Revised: 10/17/2017] [Accepted: 10/17/2017] [Indexed: 01/06/2023]
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Grebenko A, Dremov V, Barzilovich P, Bubis A, Sidoruk K, Voeikova T, Gagkaeva Z, Chernov T, Korostylev E, Gorshunov B, Motovilov K. Impedance spectroscopy of single bacterial nanofilament reveals water-mediated charge transfer. PLoS One 2018; 13:e0191289. [PMID: 29351332 PMCID: PMC5774759 DOI: 10.1371/journal.pone.0191289] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Accepted: 01/02/2018] [Indexed: 11/19/2022] Open
Abstract
For decades respiratory chain and photosystems were the main firing field of the studies devoted to mechanisms of electron transfer in proteins. The concept of conjugated lateral electron and transverse proton transport during cellular respiration and photosynthesis, which was formulated in the beginning of 1960-s, has been confirmed by thousands of experiments. However, charge transfer in recently discovered bacterial nanofilaments produced by various electrogenic bacteria is regarded currently outside of electron and proton conjugation concept. Here we report the new study of charge transfer within nanofilaments produced by Shewanella oneidensis MR-1 conducted in atmosphere of different relative humidity (RH). We utilize impedance spectroscopy and DC (direct current) transport measurements to find out the peculiarities of conductivity and Raman spectroscopy to analyze the nanofilaments' composition. Data analysis demonstrates that apparent conductivity of nanofilaments has crucial sensitivity to humidity and contains several components including one with unusual behavior which we assign to electron transport. We demonstrate that in the case of Shewanella oneidensis MR-1 charge transfer within these objects is strongly mediated by water. Basing on current data analysis of conductivity we conclude that the studied filaments of Shewanella oneidensis MR-1 are capable of hybrid (conjugated) electron and ion conductivity.
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Affiliation(s)
- Artem Grebenko
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Solid State Physics (RAS), Academician Osipyana street 2, Chernogolovka, Russia
| | - Vyacheslav Dremov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Solid State Physics (RAS), Academician Osipyana street 2, Chernogolovka, Russia
| | - Petr Barzilovich
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Problems of Chemical Physics (RAS), Academician Semenov avenue 1, Chernogolovka, Russia
| | - Anton Bubis
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Solid State Physics (RAS), Academician Osipyana street 2, Chernogolovka, Russia
| | - Konstantin Sidoruk
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., 1, Moscow, Russia
| | - Tatiyana Voeikova
- Scientific Center of Russian Federation Research Institute for Genetics and Selection of Industrial Microorganisms, 1-st Dorozhniy pr., 1, Moscow, Russia
| | - Zarina Gagkaeva
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
| | - Timur Chernov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
- Institute of Problems of Chemical Physics (RAS), Academician Semenov avenue 1, Chernogolovka, Russia
| | - Evgeny Korostylev
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
| | - Boris Gorshunov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
| | - Konstantin Motovilov
- Moscow Institute of Physics and Technology, Institute lane 9, Dolgoprudny, Russian Federation
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38
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Panda SS, Katz HE, Tovar JD. Solid-state electrical applications of protein and peptide based nanomaterials. Chem Soc Rev 2018; 47:3640-3658. [DOI: 10.1039/c7cs00817a] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
This review summarizes recent advancements in electrical properties and applications of natural proteins and mutated variants, synthetic oligopeptides and peptide–π conjugates.
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Affiliation(s)
- Sayak Subhra Panda
- Department of Chemistry
- Krieger School of Arts and Sciences
- Johns Hopkins University
- Baltimore
- USA
| | - Howard E. Katz
- Department of Chemistry
- Krieger School of Arts and Sciences
- Johns Hopkins University
- Baltimore
- USA
| | - John D. Tovar
- Department of Chemistry
- Krieger School of Arts and Sciences
- Johns Hopkins University
- Baltimore
- USA
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