Monitoring photo-induced population dynamics in metastable linkage isomer crystals: a crystallographic kinetic study of [Pd(Bu4dien)NO2]BPh4

Methods in molecular photocrystallography

Over the last three decades, the technology that makes it possible to follow chemical processes in the solid state in real time has grown enormously. These studies have important implications for the design of new functional materials for applications in optoelectronics and sensors. Light-matter interactions are of particular importance, and photocrystallography has proved to be an important tool for studying these interactions. In this technique, the three-dimensional structures of light-activated molecules, in their excited states, are determined using single-crystal X-ray crystallography. With advances in the design of high-power lasers, pulsed LEDs and time-gated X-ray detectors, the increased availability of synchrotron facilities, and most recently, the development of XFELs, it is now possible to determine the structures of molecules with lifetimes ranging from minutes down to picoseconds, within a single crystal, using the photocrystallographic technique. This review discusses the procedures for conducting successful photocrystallographic studies and outlines the different methodologies that have been developed to study structures with specific lifetime ranges. The complexity of the methods required increases considerably as the lifetime of the excited state shortens. The discussion is supported by examples of successful photocrystallographic studies across a range of timescales and emphasises the importance of the use of complementary analytical techniques in order to understand the solid-state processes fully.

Pressure-induced single-crystal-to-single-crystal nitrite ligand isomerisation accompanied by a piezochromic effect

High-pressure structural study of a piezochromic crystal of a rare di-exo-nitrito nickel(II) complex supported by computational analysis is presented. The examined system is not photoswitchable, however, in the 0-6.2 GPa pressure range the crystal undergoes two phase-transitions accompanied by a colour change and the nitrite ligand isomerisation, which is unique.

Interrelations between Linkage Isomers of an Efficient Square-planar Nickel(II) Nitrite Photoswitch in the Solid State

An efficient nitrite nickel(II) photoswitch, with the 1-phenyl-2-hydroxyimino-3-[(2'-dimethylamino)ethyl]imino-1-propanone moiety used as the ancillary ligand, is reported. In the ground-state ('dark') crystal structure, the studied compound exists predominantly as the nitro-(η1 -N(O)2 ) isomer, however, traces of the exo- and endo-nitrito-(η1 -ONO) forms are detected both at 100 K (4-5 % each) and under ambient conditions (~9 % each). When excited with the 405-530 nm LED light, the nitro-to-nitrito isomerization takes place. The total conversion exceeds 90 %. The exo-nitrito linkage isomer constitutes the dominant photo-generated form, whereas the relative population of both nitrito species depends on temperature. The reaction is fully reversible and reproducible. The photo-products are stable up to 200 K. The system constitutes a good model case for the reaction mechanism studies. Thus, experimental and theoretical investigations on the photo-isomerism were conducted and are presented in detail. Eventually, the nitro→exo-nitrito→endo-nitrito reaction pathway is proposed.

Uncovering the role of non-covalent interactions in solid-state photoswitches by non-spherical structure refinements with NoSpherA2

We present a charge density study of two linkage isomer photoswitches, [Pd(Bu4dien)(NO2)]BPh4·THF (1) and [Ni(Et4dien)(NO2)2] (2) using Hirshfeld Atom Refinement (HAR) methods implemented via the NoSpherA2 interface in Olex2. HAR is used to explore the electron density distribution in the photoswitchable molecules of 1 and 2, to gain an in-depth understanding of key bonding features and their influence on the single-crystal-to-single-crystal reaction. HAR analysis is also combined with ab initio calculations to explore the non-covalent interactions that influence physical properties of the photoswitches, such as the stability of the excited state nitrito-(η1-ONO) isomer. This insight can be fed back into the crystal engineering process to develop new and improved photoswitches that can be optimised towards specific applications.

Photogeneration of Several Linkage Isomers and Investigation of Forward and Backward Nitro-Nitrito Isomerization Processes in a Palladium Complex

Photoinduced linkage isomers (PLIs) of the nitro-ligand were generated and comprehensively characterized in a square planar unit [Pd(NH₃)₃NO₂]⁺ of the complex salts [Pd(NH₃)₄][Pd(NH₃)₃NO₂][MOx₃]·yH₂O (M = Cr (Cr), Rh (Rh), Co (Co), Ox = oxalate). Structural (XRD) and spectroscopic (IR, UV-vis) investigations at 10 and 150 K allowed determining the structures of several photoinduced linkage isomers, endo-ONO (PLI1, 2) and exo-ONO (PLI3, 4) isomers generated by irradiation with 365 nm from the initial NO₂ (GS), along with the assignment of the infrared (IR) bands to each structural isomer. Based on a combination of these methods, the photo- and thermally induced interplay of PLIs was investigated. Irradiation in the temperature range of 10-80 K induces the formation of both endo- and exo-ONO isomers, while increasing the temperature up to 150 K results in the formation of only endo-ONO isomers. The structural arrangement of the endo-ONO and exo-ONO PLI is strongly influenced by intermolecular interactions due to the partial occupation of a neighboring site by water molecules. The investigation of thermal dynamics of PLIs revealed that the thermal decay of the exo-ONO isomer occurs via two steps exo-ONO → endo-ONO → NO₂. The kinetic parameters (E_a, k₀) of both decay processes were determined together with the characteristic decay temperatures (T_d) by IR spectroscopy. According to the photoinduced dynamics measured by IR spectroscopy, the mechanism of PLI formation in [Pd(NH₃)₃NO₂]⁺ could be described as NO₂ → endo-ONO → exo-ONO.

Cooperative Photochemical Reaction Kinetics in Organic Molecular Crystals

Photoreactive molecular crystals have been intensively investigated as next-generation functional materials. Changes in physicochemical properties are usually interpreted in terms of static pre- and post-reaction molecular structures and packings determined by X-ray structure analysis. However, to elucidate the dynamic properties, it is necessary to understand the dynamic nature of photochemical kinetics in crystals. Reaction dynamics in the crystal phase can be dramatically different from those in dilute solution because the local molecular environment evolves as the surrounding reactant molecules are transformed into products. In this Review article, we summarize multiple examples of photochemical reactions in the crystalline phase that do not follow classical kinetic behavior. We also discuss different theoretical methods that can be used to describe this behavior. This Review article should help provide a foundation for future workers to understand and analyze photochemical reaction kinetics in crystals.

An optically reversible room-temperature solid-state cobalt(III) photoswitch based on nitro-to-nitrito linkage isomerism

A simple trinitro cobalt complex [Co(3,3'-diamino-N-methylpropanediamine)(NO₂)₃] was proven to be photoswitchable at room temperature as the Pca2₁ polymorph with the maximum nitro-to-nitrito conversion reaching ca. 55%. Solid-state IR, UV-vis and XRD indicate that the transformation can be triggered optically in both ways via 470 nm and 570-660 nm LED light, respectively.

LED-pump-X-ray-multiprobe crystallography for sub-second timescales

The visualization of chemical processes that occur in the solid-state is key to the design of new functional materials. One of the challenges in these studies is to monitor the processes across a range of timescales in real-time. Here, we present a pump-multiprobe single-crystal X-ray diffraction (SCXRD) technique for studying photoexcited solid-state species with millisecond-to-minute lifetimes. We excite using pulsed LEDs and synchronise to a gated X-ray detector to collect 3D structures with sub-second time resolution while maximising photo-conversion and minimising beam damage. Our implementation provides complete control of the pump-multiprobe sequencing and can access a range of timescales using the same setup. Using LEDs allows variation of the intensity and pulse width and ensures uniform illumination of the crystal, spreading the energy load in time and space. We demonstrate our method by studying the variable-temperature kinetics of photo-activated linkage isomerism in [Pd(Bu4dien)(NO2)][BPh4] single-crystals. We further show that our method extends to following indicative Bragg reflections with a continuous readout Timepix3 detector chip. Our approach is applicable to a range of physical and biological processes that occur on millisecond and slower timescales, which cannot be studied using existing techniques.

Trapping X‐ray Radiation Damage from Homolytic Se−C Bond Cleavage in BnSeSeBn Crystals (Bn=benzyl, CH 2 C 6 H 5 )

Irradiation of dibenzyl diselenide BnSeSeBn with X‐ray or UV‐light cleaves the Se−C and the Se−Se bonds, inducing stable and metastable radical states. They are inevitably important to all natural and life sciences. Structural changes due to X‐ray‐induced Se−C bond‐cleavage could be pin‐pointed in various high‐resolution X‐ray diffraction experiments for the first time. Extended DFT methods were applied to characterize the solid‐state structure and support the refinement of the observed residuals as contributions from the BnSeSe⋅ radical species. The X‐ray or UV‐irradiated crystalline samples of BnSeSeBn were characterized by solid‐state EPR. This paper provides insight that in the course of X‐ray structure analysis of selenium compounds not only organo‐selenide radicals like RSe⋅ may occur, but also organo diselenide BnSeSe⋅ radicals and organic radicals R⋅ are generated, particularly important to know in structural biology.

Structural Capture of η1-OSO to η2-(OS)O Coordination Isomerism in a New Ruthenium-Based SO2-Linkage Photoisomer That Exhibits Single-Crystal Optical Actuation

Recent discoveries of a range of single-crystal optical actuators are feeding a new form of materials chemistry, given their broad range of potential applications, from light-induced molecular motors to light sensors and optical-memory media. A series of ruthenium-based coordination complexes that exhibit sulfur dioxide linkage photoisomerization is of particular interest because they exhibit single-crystal optical actuation via either optical switching or nano-optomechanical transduction processes. We report the discovery of a new complex in this series of chemicals, [Ru(SO₂)(NH₃)₄(3-fluoropyridine)]tosylate₂ (1), which forms an η¹-OSO photoisomer with 70% photoconversion upon the application of 505 nm light. The uncoordinated oxygen atom in this η¹-OSO photoisomer impinges on one of the arene rings in a neighboring tosylate counter ion of 1 just enough that incipient nano-optomechanical transduction is observed. The structure and optical properties of this actuator are characterized via in situ light-induced single-crystal X-ray diffraction (photocrystallography), single-crystal optical absorption spectroscopy and microscopy, as well as single-crystal Raman spectroscopy. These materials-characterization methods were also used to track thermally induced reverse isomerization processes in 1. One of these processes involves an η¹-OSO to η²-(OS)O transition, which was found to proceed sufficiently slowly at 110 K that its structural mechanism could be determined via a time sequence of photocrystallography experiments. The resulting data allowed us to structurally capture the transition, which was shown to occur via a form of coordination isomerism. Our newfound knowledge about this structural mechanism will aid the molecular design of new [RuSO₂] complexes with functional applications.

Inverse Isotope Effects in Single-Crystal to Single-Crystal Reactivity and the Isolation of a Rhodium Cyclooctane σ-Alkane Complex

The sequential solid/gas single-crystal to single-crystal reaction of [Rh(Cy₂P(CH₂)₃PCy₂)(COD)][BAr^F₄] (COD = cyclooctadiene) with H₂ or D₂ was followed in situ by solid-state ³¹P{¹H} NMR spectroscopy (SSNMR) and ex situ by solution quenching and GC-MS. This was quantified using a two-step Johnson–Mehl–Avrami–Kologoromov (JMAK) model that revealed an inverse isotope effect for the second addition of H₂, that forms a σ-alkane complex [Rh(Cy₂P(CH₂)₃PCy₂)(COA)][BAr^F₄]. Using D₂, a temporal window is determined in which a structural solution for this σ-alkane complex is possible, which reveals an η²,η²-binding mode to the Rh(I) center, as supported by periodic density functional theory (DFT) calculations. Extensive H/D exchange occurs during the addition of D₂, as promoted by the solid-state microenvironment.

Exploring the influence of polymorphism and chromophore co-ligands on linkage isomer photoswitching in [Pd(bpy4dca)(NO2)2]

The polymorphic Pd(II)-nitrite complex [Pd(bpy4dca)(NO2)2] (1) (bpy4dca = 2,2’-bipyridine-4,4’-dicarboxylic acid methyl ester) is shown to undergo photoinduced nitro → nitrito linkage isomer switching in two crystal forms, to varying excited...

Quasi-aromatic Möbius chelates of Cadmium(II) nitrite and/or nitrate

We report the design, structural, spectroscopic and computational characterizations of the two new quasi-aromatic Möbius chelate coordination compounds fabricated from Cd(NO3)2·4H2O and a bulky helical organic ligand derived from benzildihydrazone...

A Series of Crystallographically Characterized Linear and Branched σ-Alkane Complexes of Rhodium: From Propane to 3-Methylpentane

Using solid-state molecular organometallic (SMOM) techniques, in particular solid/gas single-crystal to single-crystal reactivity, a series of σ-alkane complexes of the general formula [Rh(Cy2PCH2CH2PCy2)(ηn:ηm-alkane)][BArF4] have been prepared (alkane = propane, 2-methylbutane, hexane, 3-methylpentane; ArF = 3,5-(CF3)2C6H3). These new complexes have been characterized using single crystal X-ray diffraction, solid-state NMR spectroscopy and DFT computational techniques and present a variety of Rh(I)···H-C binding motifs at the metal coordination site: 1,2-η2:η2 (2-methylbutane), 1,3-η2:η2 (propane), 2,4-η2:η2 (hexane), and 1,4-η1:η2 (3-methylpentane). For the linear alkanes propane and hexane, some additional Rh(I)···H-C interactions with the geminal C-H bonds are also evident. The stability of these complexes with respect to alkane loss in the solid state varies with the identity of the alkane: from propane that decomposes rapidly at 295 K to 2-methylbutane that is stable and instead undergoes an acceptorless dehydrogenation to form a bound alkene complex. In each case the alkane sits in a binding pocket defined by the {Rh(Cy2PCH2CH2PCy2)}+ fragment and the surrounding array of [BArF4]- anions. For the propane complex, a small alkane binding energy, driven in part by a lack of stabilizing short contacts with the surrounding anions, correlates with the fleeting stability of this species. 2-Methylbutane forms more short contacts within the binding pocket, and as a result the complex is considerably more stable. However, the complex of the larger 3-methylpentane ligand shows lower stability. Empirically, there therefore appears to be an optimal fit between the size and shape of the alkane and overall stability. Such observations are related to guest/host interactions in solution supramolecular chemistry and the holistic role of 1°, 2°, and 3° environments in metalloenzymes.

Room Temperature Acceptorless Alkane Dehydrogenation from Molecular σ-Alkane Complexes

The non-oxidative catalytic dehydrogenation of light alkanes via C-H activation is a highly endothermic process that generally requires high temperatures and/or a sacrificial hydrogen acceptor to overcome unfavorable thermodynamics. This is complicated by alkanes being such poor ligands, meaning that binding at metal centers prior to C-H activation is disfavored. We demonstrate that by biasing the pre-equilibrium of alkane binding, by using solid-state molecular organometallic chemistry (SMOM-chem), well-defined isobutane and cyclohexane σ-complexes, [Rh(Cy₂PCH₂CH₂PCy₂)(η:η-(H₃C)CH(CH₃)₂][BAr^F₄] and [Rh(Cy₂PCH₂CH₂PCy₂)(η:η-C₆H₁₂)][BAr^F₄] can be prepared by simple hydrogenation in a solid/gas single-crystal to single-crystal transformation of precursor alkene complexes. Solid-gas H/D exchange with D₂ occurs at all C-H bonds in both alkane complexes, pointing to a variety of low energy fluxional processes that occur for the bound alkane ligands in the solid-state. These are probed by variable temperature solid-state nuclear magnetic resonance experiments and periodic density functional theory (DFT) calculations. These alkane σ-complexes undergo spontaneous acceptorless dehydrogenation at 298 K to reform the corresponding isobutene and cyclohexadiene complexes, by simple application of vacuum or Ar-flow to remove H₂. These processes can be followed temporally, and modeled using classical chemical, or Johnson-Mehl-Avrami-Kologoromov, kinetics. When per-deuteration is coupled with dehydrogenation of cyclohexane to cyclohexadiene, this allows for two successive KIEs to be determined [k_H/k_D = 3.6(5) and 10.8(6)], showing that the rate-determining steps involve C-H activation. Periodic DFT calculations predict overall barriers of 20.6 and 24.4 kcal/mol for the two dehydrogenation steps, in good agreement with the values determined experimentally. The calculations also identify significant C-H bond elongation in both rate-limiting transition states and suggest that the large k_H/k_D for the second dehydrogenation results from a pre-equilibrium involving C-H oxidative cleavage and a subsequent rate-limiting β-H transfer step.

Photocrystallographic Studies on Transition Metal Nitrito Metastable Linkage Isomers: Manipulating the Metastable State

The design of solid-state materials whose properties and functions can be manipulated in a controlled manner by the application of light is an important objective in modern materials chemistry. When the material changes property or function, it is helpful if a simple measurable response, such as a change in color, can be detected. Potential applications for such materials are wide ranging, from data storage to smart windows. With the growing emphasis on solid-state materials that have two or more accessible energy states and which exhibit bistability, attention has turned to transition metal complexes that contain ambidentate ligands that can switch between linkage isomeric forms when activated by light. Suitable ligands that show promise in this area include nitrosyls, nitro groups, and coordinated sulfur dioxide molecules, each of which can coordinate to a metal center in more than one bonding mode. A nitrosyl normally coordinates through its N atom (η¹-NO) but when photoactivated can undergo isomerism and coordinate through its O atom (η¹-ON). At a molecular level, converting between these two configurations can act as an “on/off” switch. The analysis of such materials has been aided by the development of photocrystallographic techniques, which allow the full three-dimensional structure of a single crystal of a complex, under photoactivation, to be determined, when it is in either a metastable or short-lived excited state. The technique effectively brings the dimension of “time” to the crystallographic experiment and brings us closer to being able to watch solid-state processes occur in real time.

In this Account, we highlight the advances made in photocrystallography for studying solid-state, photoactivated linkage isomerism and describe the factors that favor the switching process and which allow complete switching between isomers. We demonstrate that control of temperature is key to achieving either a metastable state or an excited state with a specific lifetime. We draw our conclusions from published work on the formation of photoactivated metastable states for nitrosyl and sulfur dioxide complexes and from our own work on photoactivated switching between nitro and nitrito groups. We show that efficient switching between isomers is dependent on the wavelength of light used, on the temperature at which the experiment is carried out, on the flexibility of the crystal lattice, and on both the electronic and steric environment of the ambidentate ligand undergoing isomerism. We have designed and prepared a number of nitro/nitrito isomeric metal complexes that undergo reversible 100% conversion between the two forms at temperatures close to room temperature. Through our fine control over the generation of the metastable states, it should be possible to effectively “dial up” a suitable temperature to give a metastable or an excited state with a desired lifetime.

Understanding solid-state photoswitching in [Re(OMe2-bpy)(CO)3(η1-NO2)] crystals via in situ photocrystallography

Single-crystal-to-single-crystal linkage isomerism is determined in a photoswitchable Re(i)-bpy crystal, shedding new light on the photoactive properties of potential Re(i)-photocatalysts.