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Anitha O, Ghorai S, Thiruppathiraja T, Amir H, Murugan A, Natarajan R, Lakshmipathi S, Viswanathan C, Jothi M, Murugesapandian B. Pyridine appended pyrimidine bis hydrazone: Zn 2+/ATP detection, bioimaging and functional properties of its dinuclear Zn(II) complex. Talanta 2024; 273:125900. [PMID: 38490021 DOI: 10.1016/j.talanta.2024.125900] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2023] [Revised: 03/06/2024] [Accepted: 03/08/2024] [Indexed: 03/17/2024]
Abstract
A pyridine functionalized pyrimidine-based system, H2P was successfully synthesized, characterized, and evaluated for its remarkable selective characteristics towards Zn2+ and ATP ions. The chemical sensing capabilities of H2P were demonstrated through absorption, fluorescence, and NMR spectroscopic techniques. The probe exhibited outstanding sensitivity when interacting with the ions, demonstrating relatively strong association constants and impressively low detection limits. The comprehensive binding mechanism of H2P with respect to Zn2+ and ATP ions was investigated using a combination of analytical methods, including Job's plot, NMR spectroscopy, mass spectrometry, and density functional theory (DFT) experiments. The interesting sensing ability of H2P for Zn2+/ATP ions was harnessed for live cell bioimaging and other diverse on-site detection purposes, including paper strips, cotton swabs, and applications involving mung bean sprouts. Further, the fluorescent probe demonstrated its effectiveness in detecting Zn2+ and ATP within live cells, indicating its significant potential in the realm of biological imaging applications. Moreover, the molecular configuration of the zinc complex (H2P-Zn2Cl4), derived from H2P, was elucidated using X-ray crystallography. This complex exhibited intriguing multifunctional attributes, encompassing its capability for detecting picric acid and for reversible acid/base sensing responses. The enhanced conducting behavior of the complex as well as its resistance properties were investigated by performing I-V characteristics and electrochemical impedance spectroscopic (EIS) experiments respectively.
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Affiliation(s)
- Ottoor Anitha
- Department of Chemistry, Bharathiar University, Coimbatore, 641046, Tamil Nadu, India
| | - Sandipan Ghorai
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical Biology, 4 Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | | | - Humayun Amir
- Department of Nanoscience and Technology, Bharathiar University, Coimbatore, 641046, Tamil Nadu, India
| | - Abinayaselvi Murugan
- Department of Human Genetics, National Institute of Mental Health and Neurosciences, Bengaluru, India
| | - Ramalingam Natarajan
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical Biology, 4 Raja S. C. Mullick Road, Jadavpur, Kolkata, 700032, India
| | | | - Chinnuswamy Viswanathan
- Department of Nanoscience and Technology, Bharathiar University, Coimbatore, 641046, Tamil Nadu, India
| | - Mathivanan Jothi
- Department of Human Genetics, National Institute of Mental Health and Neurosciences, Bengaluru, India
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2
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Wang Z, Chen Z, Zhang Z, Wang H, Zhang H. Highly-ordered assembled organic fluorescent materials for high-resolution bio-sensing: a review. Biomater Sci 2024; 12:2019-2032. [PMID: 38469672 DOI: 10.1039/d3bm02070c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/13/2024]
Abstract
Organic fluorescent materials (OFMs) play a crucial role in the development of biosensors, enabling the extraction of biochemical information within cells and organisms, extending to the human body. Concurrently, OFM biosensors contribute significantly to the progress of modern medical and biological research. However, the practical applications of OFM biosensors face challenges, including issues related to low resolution, dispersivity, and stability. To overcome these challenges, scientists have introduced interactive elements to enhance the order of OFMs. Highly-ordered assembled OFMs represent a novel material type applied to biosensors. In comparison to conventional fluorescent materials, highly-ordered assembled OFMs typically exhibit robust anti-diffusion properties, high imaging contrast, and excellent stability. This approach has emerged as a promising method for effectively tracking bio-signals, particularly in the non-invasive monitoring of chronic diseases. This review introduces several highly-ordered assembled OFMs used in biosensors and also discusses various interactions that are responsible for their assembly, such as hydrogen bonding, π-π interaction, dipole-dipole interaction, and ion electrostatic interaction. Furthermore, it delves into the various applications of these biosensors while addressing the drawbacks that currently limit their commercial application. This review aims to provide a theoretical foundation for designing high-performance, highly-ordered assembled OFM biosensors suitable for practical applications. Additionally, it sheds light on the evolving trends in OFM biosensors and their application fields, offering valuable insights into the future of this dynamic research area.
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Affiliation(s)
- Zheng Wang
- Key Laboratory of Rubber-Plastics of Ministry of Education/Shandong Province (QUST), School of Polymer Science & Engineering, Qingdao University of Science & Technology, 53-Zhengzhou Road, Qingdao, 266042, PR China.
| | - Zilong Chen
- Key Laboratory of Rubber-Plastics of Ministry of Education/Shandong Province (QUST), School of Polymer Science & Engineering, Qingdao University of Science & Technology, 53-Zhengzhou Road, Qingdao, 266042, PR China.
| | - Zhenhao Zhang
- Key Laboratory of Rubber-Plastics of Ministry of Education/Shandong Province (QUST), School of Polymer Science & Engineering, Qingdao University of Science & Technology, 53-Zhengzhou Road, Qingdao, 266042, PR China.
| | - Hongzhen Wang
- Key Laboratory of Rubber-Plastics of Ministry of Education/Shandong Province (QUST), School of Polymer Science & Engineering, Qingdao University of Science & Technology, 53-Zhengzhou Road, Qingdao, 266042, PR China.
| | - Haichang Zhang
- Key Laboratory of Rubber-Plastics of Ministry of Education/Shandong Province (QUST), School of Polymer Science & Engineering, Qingdao University of Science & Technology, 53-Zhengzhou Road, Qingdao, 266042, PR China.
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Mondal S, Dey N. Biogenic Polymer-Based Fluorescent Assemblies: Versatile Platforms for Ultrasensitive ATP Detection and Enzyme Assay. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2024; 40:6163-6171. [PMID: 38478712 DOI: 10.1021/acs.langmuir.3c03325] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
Here, we investigated the optical properties of biocompatible supramolecular assemblies formed through electrostatic interactions between anionic fluorescent dyes and biogenic polymers. The dynamic equilibrium between the monomeric form (fluorescent) and aggregates (nonfluorescent) of dye molecules is responsible for the stimuli-responsive behavior of these polymer composites, which can respond to changes in pH, temperature, and ionic strength. Furthermore, we employed supramolecular assemblies for the purpose of turn-on fluorescence sensing of adenosine triphosphate (ATP) at physiological pH. Notably, no interference was observed even in the presence of well-known competing analytes such as pyrophosphate. In addition to its outstanding selectivity, the present system can detect ATP at concentrations as low as 4.8 nM. The superior detection capabilities are achieved through multiple interactions with biogenic polymers, involving the adenine ring, ribose unit (through hydrogen bonding), and phosphate groups (via charge pairing) of ATP. Given the remarkable sensitivity to ATP, we have applied the present system for the detection of a dephosphorylating enzyme, alkaline phosphatase.
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Affiliation(s)
- Sourav Mondal
- Department of Chemistry, Birla Institute of Technology and Science Pilani, Hyderabad Secunderabad, Telangana 500078, India
| | - Nilanjan Dey
- Department of Chemistry, Birla Institute of Technology and Science Pilani, Hyderabad Secunderabad, Telangana 500078, India
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Morozov BS, Gargiulo F, Ghule S, Lee DJ, Hampel F, Kim HM, Kataev EA. Macrocyclic Conformational Switch Coupled with Pyridinium-Induced PET for Fluorescence Detection of Adenosine Triphosphate. J Am Chem Soc 2024; 146:7105-7115. [PMID: 38417151 DOI: 10.1021/jacs.4c01621] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2024]
Abstract
The binding of nucleotides is crucial for signal transduction as it induces conformational protein changes, leading to downstream cellular responses. Synthetic receptors that bind nucleotides and transduce the binding event into global conformational rearrangements are highly challenging to design, especially those that operate in an aqueous solution. Much work is focused on evaluating functionalized dyes to detect nucleotides, whereas coupling of a nucleotide-induced conformational switching to a sensing event has not been reported to date. We disclose synthetic receptors that undergo a global conformational rearrangement upon nucleotide binding. Integrating naphthalimide and the pyridinium ion into the structure enables stabilization of the folded conformation and efficient fluorescence quenching. The binding of a nucleotide rearranges the receptor conformation and alters the strong fluorescence enhancement. The methylpyridinium-containing receptor demonstrated high sensing selectivity for adenosine 5'-triphosphate (ATP) and a record 160-fold fluorescence enhancement. It can detect fluctuations of ATP in HeLa cells and possesses low cytotoxicity. The developed systems present an attractive approach for designing ATP-responsive artificial molecular switches that operate in water and integrate a strong fluorescence response.
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Affiliation(s)
- Boris S Morozov
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Fabiano Gargiulo
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Swapnil Ghule
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Dong Joon Lee
- Department of Chemistry and Department of Energy Systems Research, Ajou University, 16499 Suwon, Republic of Korea
| | - Frank Hampel
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
| | - Hwan Myung Kim
- Department of Chemistry and Department of Energy Systems Research, Ajou University, 16499 Suwon, Republic of Korea
| | - Evgeny A Kataev
- Department of Chemistry and Pharmacy, Friedrich-Alexander Universität Erlangen-Nürnberg, Nikolaus-Fiebiger-Str. 10, 91058 Erlangen, Germany
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Maji S, Samanta J, Natarajan R. Water-Soluble Triazolium Covalent Cages for ATP Sensing. Chemistry 2024; 30:e202303596. [PMID: 38133633 DOI: 10.1002/chem.202303596] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 12/22/2023] [Accepted: 12/22/2023] [Indexed: 12/23/2023]
Abstract
Water-soluble organic cages are attractive targets for their molecular recognition and sensing features of biologically relevant molecules. Here, we have successfully designed and synthesized a pair of water-soluble cationic cages employing click reaction as the fundamental step followed by the N-methylation of the triazole rings. The rigid and shape-persistent 3D hydrophobic cavity, positively charged surface, H-bonding triazolium rings, and excellent water solubility empower both cages to exhibit a superior affinity and selectivity for binding with adenosine-5'-triphosphate (ATP) compared to cyclophanes and other macrocyclic receptors. Both cage molecules (PCC⋅Cl and BCC⋅Cl) can bind a highly emissive dye HPTS (8-hydroxypyrene-1,3,6-trisulfonic acid trisodium salt) to form non-fluorescent complexes. The addition of ATP resulted in the stronger cage⊂ATP complexes with the retention of HPTS emission upon its displacement. The resultant indicator-displacement assay system can efficiently sense and quantify ATP in nanomolar detection limits in buffer solutions and human serum matrix. Spectroscopic and theoretical studies revealed the synergistic effect of π⋅⋅⋅π stacking interaction between the aromatic moiety of the cationic cages and the adenine moiety of ATP, as well as the electrostatic and hydrogen bonding interaction between the phosphate anion of ATP and triazole protons of cages, played the pivotal roles in the sensing process.
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Affiliation(s)
- Suman Maji
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Jayanta Samanta
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
| | - Ramalingam Natarajan
- Organic and Medicinal Chemistry Division, CSIR-Indian Institute of Chemical Biology, 4 Raja S C Mullick Road, Kolkata, 700032, India
- Academy of Scientific and Innovative Research (AcSIR), Ghaziabad, 201002, India
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6
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Kislenko E, İncel A, Gawlitza K, Sellergren B, Rurack K. Towards molecularly imprinted polymers that respond to and capture phosphorylated tyrosine epitopes using fluorescent bis-urea and bis-imidazolium receptors. J Mater Chem B 2023; 11:10873-10882. [PMID: 37877301 DOI: 10.1039/d3tb01474f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2023]
Abstract
Early detection of cancer is essential for successful treatment and improvement in patient prognosis. Deregulation of post-translational modifications (PTMs) of proteins, especially phosphorylation, is present in many types of cancer. Therefore, the development of materials for the rapid sensing of low abundant phosphorylated peptides in biological samples can be of great therapeutic value. In this work, we have synthesised fluorescent molecularly imprinted polymers (fMIPs) for the detection of the phosphorylated tyrosine epitope of ZAP70, a cancer biomarker. The polymers were grafted as nanometer-thin shells from functionalised submicron-sized silica particles using a reversible addition-fragmentation chain-transfer (RAFT) polymerisation. Employing the combination of fluorescent urea and intrinsically cationic bis-imidazolium receptor cross-linkers, we have developed fluorescent sensory particles, showing an imprinting factor (IF) of 5.0. The imprinted polymer can successfully distinguish between phosphorylated and non-phosphorylated tripeptides, reaching lower micromolar sensitivity in organic solvents and specifically capture unprotected peptide complements in a neutral buffer. Additionally, we have shown the importance of assessing the influence of counterions present in the MIP system on the imprinting process and final material performance. The potential drawbacks of using epitopes with protective groups, which can co-imprint with targeted functionality, are also discussed.
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Affiliation(s)
- Evgeniia Kislenko
- Chemical and Optical Sensing Division, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstätter-Str. 11, D-12489 Berlin, Germany.
| | - Anıl İncel
- Department of Biomedical Sciences, Faculty of Health and Society, Malmö University, SE-20506 Malmö, Sweden
| | - Kornelia Gawlitza
- Chemical and Optical Sensing Division, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstätter-Str. 11, D-12489 Berlin, Germany.
| | - Börje Sellergren
- Department of Biomedical Sciences, Faculty of Health and Society, Malmö University, SE-20506 Malmö, Sweden
| | - Knut Rurack
- Chemical and Optical Sensing Division, Bundesanstalt für Materialforschung und -prüfung (BAM), Richard-Willstätter-Str. 11, D-12489 Berlin, Germany.
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7
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Delgado-Pinar E, Medeiros M, Costa T, Seixas de Melo JS. Highly Selective Fluorescent Sensors: Polyethylenimine Derivatives of Triphenylamine and Coumarin for GTP and ATP Interaction via Fluorescence Lifetime Imaging Microscopy. ACS APPLIED POLYMER MATERIALS 2023; 5:6176-6185. [PMID: 37588082 PMCID: PMC10426326 DOI: 10.1021/acsapm.3c00834] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 06/28/2023] [Indexed: 08/18/2023]
Abstract
Chemical derivatives of polyethylenimine (PEI) receptors with either triphenylamine (TPA) or 7-hydroxy-4-methyl-coumarin (Cou) form stable complexes with adenine and guanine nucleotides in water. The host-guest complex modulation is found to be based on noncovalent molecular interactions such as π-π stacking and hydrogen bonding, which are dependent on the aromatic moieties attached to the polyaminic (PEI) backbone. PEI-TPA acts as a chemosensor with a recognition driving force based on aggregation-induced emission (AIE), involving π-π interaction between the nucleic base and TPA. It detects GTP by a chelation enhancement quenching effect of fluorescence (CHEQ) with a measured logarithm stability constant, log β = 7.7. By varying the chemical characteristics of the fluorophore, as in the PEI-Cou system, the driving force for recognition changes from a π-π interaction to an electrostatic interaction. The coumarin derivative detects ATP with a log β value one order of magnitude higher than that for GTP, allowing for the selective recognition of the two nucleotides in a 100% aqueous solution. Furthermore, fluorescence lifetime imaging microscopy (FLIM) allows for a correlation between the selectivity of PEI-TPA toward nucleotides and the morphology of the structures formed upon ATP and GTP recognition. This study offers valuable insights into the design of receptors for the selective recognition of nucleotides in water.
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Affiliation(s)
- Estefanía Delgado-Pinar
- CQC-IMS,
Department of Chemistry, University of Coimbra, Rua Larga, Coimbra 3004-535, Portugal
- Instituto
de Ciencia, Molecular, Departamento de Química Inorgánica, Universidad de Valencia, C/Catedrático José Beltrán
2, Paterna 46980, Spain
| | - Matilde Medeiros
- CQC-IMS,
Department of Chemistry, University of Coimbra, Rua Larga, Coimbra 3004-535, Portugal
| | - Telma Costa
- CQC-IMS,
Department of Chemistry, University of Coimbra, Rua Larga, Coimbra 3004-535, Portugal
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8
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Sivagnanam S, Mahato P, Das P. An overview on the development of different optical sensing platforms for adenosine triphosphate (ATP) recognition. Org Biomol Chem 2023; 21:3942-3983. [PMID: 37128980 DOI: 10.1039/d3ob00209h] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
Adenosine triphosphate (ATP), one of the biological anions, plays a crucial role in several biological processes including energy transduction, cellular respiration, enzyme catalysis and signaling. ATP is a bioactive phosphate molecule, recognized as an important extracellular signaling agent. Apart from serving as a universal energy currency for various cellular events, ATP is also considered a factor responsible for numerous physiological activities. It regulates cellular metabolism by breaking phosphoanhydride bonds. Several diseases have been reported widely based on the levels and behavior of ATP. The variation of ATP concentration usually causes a foreseeable impact on mitochondrial physiological function. Mitochondrial dysfunction is responsible for the occurrence of many severe diseases such as angiocardiopathy, malignant tumors and Parkinson's disease. Therefore, there is high demand for developing a sensitive, fast-responsive, nontoxic and versatile detection platform for the detection of ATP. To this end, considerable efforts have been employed by several research groups throughout the world to develop specific and sensitive detection platforms to recognize ATP. Although a repertoire of optical chemosensors (both colorimetric and fluorescent) for ATP has been developed, many of them are not arrayed appropriately. Therefore, in this present review, we focused on the design and sensing strategy of some chemosensors including metal-free, metal-based, sequential sensors, aptamer-based sensors, nanoparticle-based sensors etc. for ATP recognition via diverse binding mechanisms.
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Affiliation(s)
- Subramaniyam Sivagnanam
- Department of Chemistry, SRM Institute of Science and Technology, SRM Nagar, Potheri, Kattankulathur, Tamil Nadu-603203, India.
| | - Prasenjit Mahato
- Department of Chemistry, Raghunathpur College, Sidho-Kanho-Birsha University, Purulia, West Bengal-723133, India
| | - Priyadip Das
- Department of Chemistry, SRM Institute of Science and Technology, SRM Nagar, Potheri, Kattankulathur, Tamil Nadu-603203, India.
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9
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Ray S, Laha S, Das M, Das UK, Bag A, Choudhuri I, Bhattacharya N, Samanta BC, Maity T. Solvent-regulated fluorescence off-on signaling of Ni(II) and Zn(II) with the formation of two mononuclear complexes with an ATP detection ability by Zn(II) assembly. Analyst 2023; 148:594-608. [PMID: 36594590 DOI: 10.1039/d2an01938h] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The current study shows that Schiff base HL, (Z)-2,4-dibromo-6-(((piperidin-2-ylmethyl)imino)methyl)phenol, can be used successfully as a selective chemosensor for Zn(II) and Ni(II) among several competing cations in purely aqueous and semi-aqueous media. Under UV light in methanol-water (9 : 1) HEPES buffer, the receptor gives its response by changing its color to cyan color in the presence of Zn(II) and to bluish cyan color in the presence of Ni(II). Surprisingly, the chemosensor can only reliably identify Zn(II) in a hundred percent aqueous medium by changing its color to light yellow. UV and fluorescence studies in both aqueous and semi-aqueous media are used to further investigate this Zn(II) and Ni(II) recognition phenomenon. The high values of the host-guest binding constants, obtained by electronic and fluorescence titration, ensure that a strong bond exists between HL and Ni(II)/Zn(II). As anticipated, two highly luminescent mononuclear, crystalline compounds, complexes 1 and 2, have been developed by a separate reaction of HL and Zn(II)/Ni(II), and the high luminous properties are due to the occurrence of Chelation Enhanced Fluorescence (CHEF). According to the single crystal structure, the asymmetric units of both complexes consist of two deprotonated chemosensor units and one Zn(II)/Ni(II), leading to the formation of an octahedral complex. For Ni(II) and Zn(II) sensing, the predicted LOD is in the nanomolar range. Both complexes 1 and 2 are fluorescence active and studies to check their ATP detection ability, but intriguingly, only complex 2 is capable of detecting ATP in a fully aqueous solution. Finally, the live cell imaging study validates the two sensors' biosensing functionality.
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Affiliation(s)
- Subham Ray
- Department of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur, West Bengal, 721404, India.
| | - Soumik Laha
- Indian Institute of Chemical Biology, Jadavpur, Kolkata, West Bengal, India
| | - Manik Das
- Department of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur, West Bengal, 721404, India.
| | - Uttam Kumar Das
- Department of Chemistry, School of Physical Sciences, Mahatma Gandhi Central University, Bihar, India
| | - Arijit Bag
- School of Natural and Applied Sciences, Maulana Abul Kalam Azad University of Technology, West Bengal, India
| | - Indranil Choudhuri
- Department of Biotechnology, Panskura Banamali College, Panskura, West Bengal, India
| | - Nandan Bhattacharya
- Department of Biotechnology, Panskura Banamali College, Panskura, West Bengal, India
| | | | - Tithi Maity
- Department of Chemistry, Prabhat Kumar College, Contai, Purba Medinipur, West Bengal, 721404, India.
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Sharma P, Kumar S, Walia A, Marok SS, Vanita V, Singh P. A naphthalimide-tyrosine-based dicationic amphiphile for intracellular ' turn-on' simultaneous detection of ATP and CTP. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:203-211. [PMID: 36520082 DOI: 10.1039/d2ay01550a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/17/2023]
Abstract
We have developed a new naphthalimide-based amphiphile (YN-1) for the simultaneous detection of ATP and CTP. In YN-1, the cationic tyrosine-linked polyamine (+2 charge, hydrophilic unit) is appended at the -peri position of naphthalimide (hydrophobic unit). YN-1 and its Boc-protected compound 4 were characterized using state-of-the-art spectroscopic and optical techniques such as NMR, IR, UV-vis and fluorescence. The fluorescence data revealed that YN-1 showed a 'turn-on' (λem = 440 nm) fluorescence response for nanomolar detection of nucleoside triphosphates such as ATP and CTP in 20% HEPES buffer-DMSO solution. YN-1 also showed a concentration-based discrimination between ATP and CTP. YN-1 has been successfully applied for bioimaging of nucleoside triphosphates in MCF-7 live cancer cells with good compatibility. Therefore, the important findings from the present work will provide insight for future development of fluorescent probes to detect various kinds of essential nucleoside triphosphates.
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Affiliation(s)
- Poonam Sharma
- Department of Chemistry, UGC Centre for Advanced Studies, Guru Nanak Dev University, Amritsar, Pb, India.
| | - Sugandha Kumar
- Department of Chemistry, UGC Centre for Advanced Studies, Guru Nanak Dev University, Amritsar, Pb, India.
- School of Physical Sciences, Starex University, Gurugram, India
| | - Amandeep Walia
- Department of Human Genetics, Guru Nanak Dev University, Amritsar, Pb, India.
| | | | - Vanita Vanita
- Department of Human Genetics, Guru Nanak Dev University, Amritsar, Pb, India.
| | - Prabhpreet Singh
- Department of Chemistry, UGC Centre for Advanced Studies, Guru Nanak Dev University, Amritsar, Pb, India.
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11
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Viviano-Posadas AO, Romero-Mendoza U, Bazany-Rodríguez IJ, Velázquez-Castillo RV, Martínez-Otero D, Bautista-Renedo JM, González-Rivas N, Galindo-Murillo R, Salomón-Flores MK, Dorazco-González A. Efficient fluorescent recognition of ATP/GTP by a water-soluble bisquinolinium pyridine-2,6-dicarboxamide compound. Crystal structures, spectroscopic studies and interaction mode with DNA. RSC Adv 2022; 12:27826-27838. [PMID: 36320280 PMCID: PMC9520314 DOI: 10.1039/d2ra05040d] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2022] [Accepted: 09/21/2022] [Indexed: 11/04/2023] Open
Abstract
The new dicationic pyridine-2,6-dicarboxamide-based compound 1 bearing two N-alkylquinolinium units was synthesized, structurally determined by single-crystal X-ray diffraction, and studied in-depth as a fluorescent receptor for nucleotides and inorganic phosphorylated anions in pure water. The addition of nucleotides to 1 at pH = 7.0 quenches its blue emission with a selective affinity towards adenosine 5'-triphosphate (ATP) and guanosine 5'-tripohosphate (GTP) over other nucleotides such CTP, UTP, ADP, AMP, dicarboxylates and inorganic anions. On the basis of the spectroscopic tools (1H, 31P NMR, UV-vis, fluorescence), MS measurements and DFT calculations, receptor 1 binds ATP with high affinity (log K = 5.04) through the simultaneous formation of strong hydrogen bonds and π-π interactions between the adenosine fragment and quinolinium ring with binding energy calculated in 8.7 kcal mol-1. High affinity for ATP/GTP is attributed to the high acidity of amides and preorganized rigid structure of 1. Receptor 1 is an order of magnitude more selective for ATP than GTP. An efficient photoinduced electron transfer quenching mechanism with simultaneous receptor-ATP complexation in both the excited and ground states is proposed. Additionally, multiple spectroscopic studies and molecular dynamics simulations showed that 1 can intercalate into DNA base pairs.
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Affiliation(s)
- Alejandro O Viviano-Posadas
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Ulises Romero-Mendoza
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Iván J Bazany-Rodríguez
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Rocío V Velázquez-Castillo
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Diego Martínez-Otero
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Joanatan M Bautista-Renedo
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Nelly González-Rivas
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM km 14.5 Carrera Toluca-Atlacomulco, Campus UAEMex "El Rosedal" San Cayetano-Toluca Toluca de Lerdo 50200 Estado de México Mexico
| | - Rodrigo Galindo-Murillo
- Department of Medicinal Chemistry, College of Pharmacy, University of Utah 2000 East 30 South Skaggs 306 Salt Lake City 84112 Utah USA
| | - María K Salomón-Flores
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
| | - Alejandro Dorazco-González
- Institute of Chemistry, National Autonomous University of Mexico Circuito Exterior, Ciudad Universitaria México, D.F., 04510 Mexico +52-55-56224514
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12
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Giri D, Raut SK, Behera CK, Patra SK. Diketopyrrollopyrrole anchored carbazole-alt-thiophene based Fe3+-coordinated metallopolymer for the selective recognition of ATP. POLYMER 2022. [DOI: 10.1016/j.polymer.2022.124951] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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13
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Lou J, Schuster JA, Barrera FN, Best MD. ATP-Responsive Liposomes via Screening of Lipid Switches Designed to Undergo Conformational Changes upon Binding Phosphorylated Metabolites. J Am Chem Soc 2022; 144:3746-3756. [PMID: 35171601 DOI: 10.1021/jacs.2c00191] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
Liposomal delivery vehicles can dramatically enhance drug transport. However, their clinical application requires enhanced control over content release at diseased sites. For this reason, triggered release strategies have been explored, although a limited toolbox of stimuli has thus far been developed. Here, we report a novel strategy for stimuli-responsive liposomes that release encapsulated contents in the presence of phosphorylated small molecules. Our formulation efforts culminated in selective cargo release driven by ATP, a universal energy source that is upregulated in diseases such as cancer. Specifically, we developed lipid switches 1a-b bearing two ZnDPA units designed to undergo substantial conformational changes upon ATP binding, thereby disrupting membrane packing and triggering the release of encapsulated contents. Dye leakage assays using the hydrophobic dye Nile red validated that ATP-driven release was selective over 11 similar phosphorylated metabolites, and release of the hydrophilic dye calcein was also achieved. Multiple alternative lipid switch structures were synthesized and studied (1c-d and 2), which provided insights into the structural features that render 1a-b selective toward ATP-driven release. Importantly, analysis of cellular delivery using fluorescence microscopy in conjunction with pharmacological ATP manipulation showed that liposome delivery was specific, as it increased upon intracellular ATP accumulation, and was inhibited by ATP downregulation. Our new approach shows strong prospects for enhancing the selectivity of release and payload delivery to diseased cells driven by metabolites such as ATP, providing an exciting new paradigm for controlled release.
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Affiliation(s)
- Jinchao Lou
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Jennifer A Schuster
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Francisco N Barrera
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Michael D Best
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
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14
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Chen W, Liang H, Wen X, Li Z, Xiong H, Tian Q, Yan M, Tan Y, Royal G. Synchronous colorimetric determination of CN−, F−, and H2PO4− based on structural manipulation of hydrazone sensors. Inorganica Chim Acta 2022. [DOI: 10.1016/j.ica.2021.120760] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
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15
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A Selective Luminescent Probe to Monitor Cellular ATP: Potential Application for in vivo Imaging in Zebrafish Embryo. J Photochem Photobiol A Chem 2022. [DOI: 10.1016/j.jphotochem.2022.113895] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Krämer J, Kang R, Grimm LM, De Cola L, Picchetti P, Biedermann F. Molecular Probes, Chemosensors, and Nanosensors for Optical Detection of Biorelevant Molecules and Ions in Aqueous Media and Biofluids. Chem Rev 2022; 122:3459-3636. [PMID: 34995461 PMCID: PMC8832467 DOI: 10.1021/acs.chemrev.1c00746] [Citation(s) in RCA: 109] [Impact Index Per Article: 54.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Synthetic molecular probes, chemosensors, and nanosensors used in combination with innovative assay protocols hold great potential for the development of robust, low-cost, and fast-responding sensors that are applicable in biofluids (urine, blood, and saliva). Particularly, the development of sensors for metabolites, neurotransmitters, drugs, and inorganic ions is highly desirable due to a lack of suitable biosensors. In addition, the monitoring and analysis of metabolic and signaling networks in cells and organisms by optical probes and chemosensors is becoming increasingly important in molecular biology and medicine. Thus, new perspectives for personalized diagnostics, theranostics, and biochemical/medical research will be unlocked when standing limitations of artificial binders and receptors are overcome. In this review, we survey synthetic sensing systems that have promising (future) application potential for the detection of small molecules, cations, and anions in aqueous media and biofluids. Special attention was given to sensing systems that provide a readily measurable optical signal through dynamic covalent chemistry, supramolecular host-guest interactions, or nanoparticles featuring plasmonic effects. This review shall also enable the reader to evaluate the current performance of molecular probes, chemosensors, and nanosensors in terms of sensitivity and selectivity with respect to practical requirement, and thereby inspiring new ideas for the development of further advanced systems.
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Affiliation(s)
- Joana Krämer
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Rui Kang
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Laura M. Grimm
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Luisa De Cola
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- Dipartimento
DISFARM, University of Milano, via Camillo Golgi 19, 20133 Milano, Italy
- Department
of Molecular Biochemistry and Pharmacology, Instituto di Ricerche Farmacologiche Mario Negri, IRCCS, 20156 Milano, Italy
| | - Pierre Picchetti
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- P.P.: email,
| | - Frank Biedermann
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
- F.B.: email,
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17
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Mondal TK, Naskar R, Gharami S, Mandal S. A new chromone based fluorescence probe for ratiometric detection of Pd2+. NEW J CHEM 2022. [DOI: 10.1039/d2nj02310e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new chromone based fluorescent probe (HMPM) is introduced for selective detection of Pd2+. The designed probe exhibits a ratiometric fluorescence enhancement which can be attributed to the ESIPT and/or...
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18
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Singh P, Sharma P, Sharma N, Kaur S. A perylene diimide-based nanoring architecture for exogenous and endogenous ATP detection: biochemical assay for monitoring phosphorylation of glucose. J Mater Chem B 2021; 10:107-119. [PMID: 34889936 DOI: 10.1039/d1tb02235k] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Positively charged amphiphiles hold great significance in supramolecular chemistry due to their good solubility, and physiochemical and molecular recognition properties. Herein, we report the synthesis, characterization and molecular recognition properties of the dicationic amphiphile based on perylene diimide-tyrosine alkyl amide amine (PDI 3). PDI 3 showed the formation of a nanoring architecture in the self-assembled aggregated state (90% H2O-DMSO mixture) as observed by SEM and TEM studies. The diameter of the nanoring is around 30-50 nm with a height varying from 1 to 2 nm. The self-assembled aggregates of PDI 3 are very sensitive towards nucleoside triphosphates. Upon addition of ATP, PDI 3 showed a decrease in the absorbance and emission intensity at 535 and 580 nm (due to the monomer state), respectively. The lowest detection limit for ATP is 10.8 nM (UV) and 3.06 nM (FI). Upon interaction of ATP with PDI 3, the nanoring morphology transformed into a spherical structure. These changes could be attributed to the formation of ionic self-assembled aggregates between dicationic PDI 3 and negatively charged ATP via electrostatic and H-bonding interactions. The complexation mechanism of PDI 3 and ATP was confirmed by optical, NMR, Job's plot, DLS, SEM and AFM studies. PDI 3 displays low cytotoxicity toward MG-63 cells and can be successfully used for the detection of exogenous and endogenous ATP. The resulting PDI 3 + ATP complex is successfully used as a 'turn-on' biochemical assay for monitoring phosphorylation of glucose.
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Affiliation(s)
- Prabhpreet Singh
- Department of Chemistry, UGC Centre for Advanced Studies II, Guru Nanak Dev University, Amritsar 143 005, India.
| | - Poonam Sharma
- Department of Chemistry, UGC Centre for Advanced Studies II, Guru Nanak Dev University, Amritsar 143 005, India.
| | - Neha Sharma
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143 005, India
| | - Satwinderjeet Kaur
- Department of Botanical and Environmental Sciences, Guru Nanak Dev University, Amritsar 143 005, India
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19
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Novel aminocalixarene-modified polydiacetylene vesicles: Synthesis and naked-eye detection of ATP. Colloids Surf A Physicochem Eng Asp 2021. [DOI: 10.1016/j.colsurfa.2021.127642] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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20
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Pushina M, Farshbaf S, Mochida W, Kanakubo M, Nishiyabu R, Kubo Y, Anzenbacher P. A Fluorescence Sensor Array Based on Zinc(II)-Carboxyamidoquinolines: Toward Quantitative Detection of ATP*. Chemistry 2021; 27:11344-11351. [PMID: 34129701 DOI: 10.1002/chem.202100896] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Indexed: 02/06/2023]
Abstract
The newly prepared fluorescent carboxyamidoquinolines (1-3) and their Zn(II) complexes (Zn@1-Zn@3) were used to bind and sense various phosphate anions utilizing a relay mechanism, in which the Zn(II) ion migrates from the Zn@1-Zn@3 complexes to the phosphate, namely adenosine 5'-triphosphate (ATP) and pyrophosphate (PPi), a process accompanied by a dramatic change in fluorescence. Zn@1-Zn@3 assemblies interact with adenine nucleotide phosphates while displaying an analyte-specific response. This process was investigated using UV-vis, fluorescence, and NMR spectroscopy. It is shown that the different binding selectivity and the corresponding fluorescence response enable differentiation of adenosine 5'-triphosphate (ATP), adenosine 5'-diphosphate (ADP), pyrophosphate (PPi), and phosphate (Pi). The cross-reactive nature of the carboxyamidoquinolines-Zn(II) sensors in conjunction with linear discriminant analysis (LDA) was utilized in a simple fluorescence chemosensor array that allows for the identification of ATP, ADP, PPi, and Pi from 8 other anions including adenosine 5'-monophosphate (AMP) with 100 % correct classification. Furthermore, the support vector machine algorithm, a machine learning method, allowed for highly accurate quantitation of ATP in the range of 5-100 μM concentration in unknown samples with error <2.5 %.
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Affiliation(s)
- Mariia Pushina
- Department of Chemistry, Bowling Green State University, Bowling Green, OH, 43403, USA
| | - Sepideh Farshbaf
- Department of Chemistry, Bowling Green State University, Bowling Green, OH, 43403, USA
| | - Wakana Mochida
- Department of Applied Chemistry, Graduate School of Urban Environmental Sciences, Tokyo Metropolitan University, Tokyo, 192-0397, Japan
| | - Masashi Kanakubo
- Department of Applied Chemistry, Graduate School of Urban Environmental Sciences, Tokyo Metropolitan University, Tokyo, 192-0397, Japan
| | - Ryuhei Nishiyabu
- Department of Applied Chemistry, Graduate School of Urban Environmental Sciences, Tokyo Metropolitan University, Tokyo, 192-0397, Japan
| | - Yuji Kubo
- Department of Applied Chemistry, Graduate School of Urban Environmental Sciences, Tokyo Metropolitan University, Tokyo, 192-0397, Japan
| | - Pavel Anzenbacher
- Department of Chemistry, Bowling Green State University, Bowling Green, OH, 43403, USA
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21
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Zhou X, Li J, Tan LL, Li Q, Shang L. Novel perylene probe-encapsulated metal-organic framework nanocomposites for ratiometric fluorescence detection of ATP. J Mater Chem B 2021; 8:3661-3666. [PMID: 31999287 DOI: 10.1039/c9tb02319d] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Adenosine triphosphate (ATP) plays an important role in various biological processes and the ATP level is closely associated with many diseases. Herein, a novel ratiometric fluorescence assay for ATP was developed based on the excimer-monomer transfer of a perylene probe. By encapsulating a perylene probe, N,N'-bis(6-caproic acid)-3,4:9,10-perylenediimide (PDI), into zeolitic imidazolate framework-8 (ZIF-8) nanocrystals, fluorescent nanocomposites (PDI@ZIF-8) with significant excimer emission of the perylene probe were prepared for the first time. The presence of ATP will trigger the decomposition of PDI@ZIF-8 due to much stronger coordination between ATP and Zn2+ than that of 2-methylimidazole and Zn2+. As a result, the encapsulated PDI probes were released, leading to significantly increased monomer emission accompanying the decrease in the excimer emission. The excimer-monomer transition signal was utilized for ratiometric ATP sensing and its potential application for detecting ATP in cell lysates was also successfully demonstrated.
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Affiliation(s)
- Xiaomeng Zhou
- State Key Laboratory of Solidification Processing, Center for Nano Energy Materials, School of Materials Science and Engineering, Northwestern Polytechnical University and Shaanxi Joint Laboratory of Graphene (NPU), Xi'an, 710072, China
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22
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Kim NH, Kim BW, Moon H, Yoo H, Kang RH, Hur JK, Oh Y, Kim BM, Kim D. AIEgen-based nanoprobe for the ATP sensing and imaging in cancer cells and embryonic stem cells. Anal Chim Acta 2021; 1152:338269. [PMID: 33648642 DOI: 10.1016/j.aca.2021.338269] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 01/14/2021] [Accepted: 01/28/2021] [Indexed: 11/29/2022]
Abstract
A turn-on fluorescent nanoprobe (named AAP-1), based on an aggregation-induced emission luminogen (AIEgen), is disclosed for the detection of adenosine triphosphate (ATP), which is an essential element in the biological system. Organic fluorophore (named TPE-TA) consists of tetraphenylethylene (TPE, sensing and signaling moiety) and mono-triamine (TA, sensing moiety), and it forms an aggregated form in aqueous media as a nanoprobe AAP-1. The nanoprobe AAP-1 has multiple electrostatic interactions as well as hydrophobic interactions with ATP, and it displays superior selectivity toward ATP, reliable sensitivity, with a detection limit around 0.275 ppb, and fast responsive (signal within 10 s). Such a fluorescent probe to monitor ATP has been actively pursued throughout fundamental and translational research areas. In vitro assay and a successful cellular ATP imaging application was demonstrated in cancer cells and embryonic stem cells. We expect that our work warrants further ATP-related studies throughout a variety of fields.
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Affiliation(s)
- Na Hee Kim
- Department of Biomedical Science, Graduate School, Kyung Hee University, Seoul, 02447, Republic of Korea
| | - Byeong Wook Kim
- Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul, 08826, Republic of Korea
| | - Heechang Moon
- Department of Biomedical Science, Graduate School of Biomedical Science and Engineering, Hanyang University, Seoul, 04763, Republic of Korea
| | - Hajung Yoo
- Department of Biomedical Science, Graduate School of Biomedical Science and Engineering, Hanyang University, Seoul, 04763, Republic of Korea
| | - Rae Hyung Kang
- Department of Biomedical Science, Graduate School, Kyung Hee University, Seoul, 02447, Republic of Korea
| | - Junho K Hur
- Department of Biomedical Science, Graduate School of Biomedical Science and Engineering, Hanyang University, Seoul, 04763, Republic of Korea; Department of Genetics, College of Medicine, Hanyang University, Seoul, 04763, Republic of Korea.
| | - Yohan Oh
- Department of Biomedical Science, Graduate School of Biomedical Science and Engineering, Hanyang University, Seoul, 04763, Republic of Korea; Department of Biochemistry and Molecular Biology, College of Medicine, Hanyang University, Seoul, 04763, Republic of Korea.
| | - B Moon Kim
- Department of Chemistry, College of Natural Sciences, Seoul National University, Seoul, 08826, Republic of Korea.
| | - Dokyoung Kim
- Department of Biomedical Science, Graduate School, Kyung Hee University, Seoul, 02447, Republic of Korea; Department of Anatomy and Neurobiology, College of Medicine, Kyung Hee University, Seoul, 02447, Republic of Korea; Center for Converging Humanities, Kyung Hee University, Seoul, 02447, Republic of Korea; Medical Research Center for Bioreaction to Reactive Oxygen Species and Biomedical Science Institute, Kyung Hee University, Seoul, 02447, Republic of Korea.
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23
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Sun W, Liu G, Tong M, Wang H, Liu S. A mitochondria-targeting fluorescent sensor for on-off-on response to Cu 2+ and ATP in cells and zebrafish. Analyst 2021; 146:1892-1896. [PMID: 33480364 DOI: 10.1039/d0an02256j] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Cupric ion (Cu2+) and adenosine triphosphate (ATP) are functionally important in mitochondria and play essential roles in many important biological processes. In this work, a mitochondria-targeting fluorescent molecule Mito-A was used as a probe to detect Cu2+ and ATP. The results showed remarkable fluorescence quenching of Mito-A in the presence of Cu2+, and then the quenched fluorescence solution gradually recovered due to the ATP binding to Cu2+ from the structure of the molecule. Mito-A has high sensitivity to Cu2+ and ATP, with limits of detection (LOD) close to 40 nM and 0.43 μM, respectively. Cell imaging experiments showed that Mito-A has good mitochondria-targeting capabilities, and can be successfully employed for imaging Cu2+ and ATP in living cells and zebrafish.
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Affiliation(s)
- Wan Sun
- College of Medicine and Nursing, Dezhou University, Dezhou 253023, China.
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24
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Guo C, Sedgwick AC, Hirao T, Sessler JL. Supramolecular Fluorescent Sensors: An Historical Overview and Update. Coord Chem Rev 2021; 427:213560. [PMID: 34108734 PMCID: PMC8184024 DOI: 10.1016/j.ccr.2020.213560] [Citation(s) in RCA: 98] [Impact Index Per Article: 32.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Since as early as 1867, molecular sensors have been recognized as being intelligent "devices" capable of addressing a variety of issues related to our environment and health (e.g., the detection of toxic pollutants or disease-related biomarkers). In this review, we focus on fluorescence-based sensors that incorporate supramolecular chemistry to achieve a desired sensing outcome. The goal is to provide an illustrative overview, rather than a comprehensive listing of all that has been done in the field. We will thus summarize early work devoted to the development of supramolecular fluorescent sensors and provide an update on recent advances in the area (mostly from 2018 onward). A particular emphasis will be placed on design strategies that may be exploited for analyte sensing and corresponding molecular platforms. Supramolecular approaches considered include, inter alia, binding-based sensing (BBS) and indicator displacement assays (IDAs). Because it has traditionally received less treatment, many of the illustrative examples chosen will involve anion sensing. Finally, this review will also include our perspectives on the future directions of the field.
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Affiliation(s)
- Chenxing Guo
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, Stop A5300, Austin, Texas 78712, United States
| | - Adam C. Sedgwick
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, Stop A5300, Austin, Texas 78712, United States
| | - Takehiro Hirao
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima 739-8526, Japan
| | - Jonathan L. Sessler
- Department of Chemistry, The University of Texas at Austin, 105 E. 24th Street, Stop A5300, Austin, Texas 78712, United States
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25
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Anbu Durai W, Ramu A, Dhakshinamoorthy A. A Visual and Ratiometric Chemosensor Using Thiophene Functionalized Hydrazone for the Selective Sensing of Pb 2+ and F - Ions. J Fluoresc 2021; 31:465-474. [PMID: 33417109 DOI: 10.1007/s10895-020-02673-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 12/28/2020] [Indexed: 02/06/2023]
Abstract
Herein, a simple, efficient ratiometric chemosensor was reported for the selective sensing of Pb2+ and F- ions using thiophene functionalized hydrazone as a chemical probe. Hydrazone moiety was developed by utilizing thiophene/naphthalene as a platform for the particular recognition of cation and anion. The structures of the precursor (Z)-(1-(5-bromothiophen-2-yl)ethylidene)hydrazine (ABTH) and the final probe 1-((Z)-(((Z)-1-(5-bromothiophen-2-yl)ethylidene)hydrazono)methyl)naphthalen-2-ol (NAPABTH) were confirmed by 1H, 13C-NMR and LC-MS spectroscopic methods. The interaction of NAPABTH with Pb2+ and F- ions was visually observed by the formation of pink and dark yellow solutions, respectively. The detection limits were found to be very low for Pb2+ as 1.06 ppm and for F- ions as 3.72 nM. This visual detection of Pb2+/F- ions with satisfactory outcomes obtained from UV-Vis titrations. The sensing mechanistic pathways and stoichiometric ratios were obtained from DFT and Job's plot, respectively. The observed results are highly promising as highly selective chemosensor with lower detection limits for Pb2+ and F- ions. This strategy could exhibit tremendous applications for the selective sensing of heavy metal cations with rapid sensitivity for the design of new devices.
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Affiliation(s)
- Willsingh Anbu Durai
- Department of Inorganic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai, Tamil Nadu, 625 021, India
| | - Andy Ramu
- Department of Inorganic Chemistry, School of Chemistry, Madurai Kamaraj University, Madurai, Tamil Nadu, 625 021, India.
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26
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Belyaev A, Chou P, Koshevoy IO. Cationic Organophosphorus Chromophores: A Diamond in the Rough among Ionic Dyes. Chemistry 2021; 27:537-552. [PMID: 32492231 PMCID: PMC7821147 DOI: 10.1002/chem.202001853] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2020] [Indexed: 12/21/2022]
Abstract
Tunable electron-accepting properties of the cationic phosphorus center, its geometry and unique preparative chemistry that allows combining this unit with diversity of π-conjugated motifs, define the appealing photophysical and electrochemical characteristics of organophosphorus ionic chromophores. This Minireview summarizes the achievements in the synthesis of the π-extended molecules functionalized with P-cationic fragments, modulation of their properties by means of structural modification, and emphasizes the important effect of cation-anion interactions, which can drastically change physical behavior of these two-component systems.
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Affiliation(s)
- Andrey Belyaev
- Department of ChemistryUniversity of Eastern FinlandYliopistokatu 780101JoensuuFinland
| | - Pi‐Tai Chou
- Department of ChemistryNational (Taiwan) UniversityTaipei106Taiwan
| | - Igor O. Koshevoy
- Department of ChemistryUniversity of Eastern FinlandYliopistokatu 780101JoensuuFinland
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27
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Kundu S, Islam MM, Mandal S, Sahoo P. Fluorescence ‘off–on–off’ signaling with zinc ensemble: a new array of investigating prevalence of ATP in liver cancer cells. NEW J CHEM 2021. [DOI: 10.1039/d1nj00051a] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
2-Hydroxy naphthaldehyde–picolylamine conjugate (NPAC) ensemble with Zn2+ (NPAC–Zn2+) has been synthesized for the selective recognition and estimation of ATP in human liver cancer cells.
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Affiliation(s)
- Shampa Kundu
- Department of Chemistry
- Visva-Bharati University
- Santiniketan-731235
- India
| | | | - Sukhendu Mandal
- Department of Microbiology
- University of Calcutta
- Kolkata-700073
- India
| | - Prithidipa Sahoo
- Department of Chemistry
- Visva-Bharati University
- Santiniketan-731235
- India
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28
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Kumar P, Pachisia S, Gupta R. Turn-on detection of assorted phosphates by luminescent chemosensors. Inorg Chem Front 2021. [DOI: 10.1039/d1qi00032b] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
This review illustrates a variety of luminescent chemosensors for the selective detection of assorted phosphates via the “Turn-On” emission mechanism with focus on their design aspects, chemical structures and sensing mechanism.
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Affiliation(s)
- Pramod Kumar
- Department of Chemistry
- University of Delhi
- Delhi-110007
- India
| | - Sanya Pachisia
- Department of Chemistry
- University of Delhi
- Delhi-110007
- India
| | - Rajeev Gupta
- Department of Chemistry
- University of Delhi
- Delhi-110007
- India
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29
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Choi SJ, Yoon B, Lin S, Swager TM. Functional Single-Walled Carbon Nanotubes for Anion Sensing. ACS APPLIED MATERIALS & INTERFACES 2020; 12:28375-28382. [PMID: 32519847 DOI: 10.1021/acsami.0c03813] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
Abstract
We report an anion-sensing platform wherein conductance changes are triggered by chemical interactions between selectors and anions. The selector design incorporates both a cationic moiety (i.e., pyridinium) and a thiourea-based dual-hydrogen-bond donor. Anion binding by a model selector (2) was studied using 1H NMR and UV-vis titrations, which reveal a binding strength toward acetate ions (AcO-) followed by Cl- > Br- > NO3-. These studies reveal that selector 2 is deprotonated upon addition of AcO-, whereas it undergoes hydrogen bonding associated with Cl-, Br-, and NO3-. The cationic pyridinium moiety improves anion binding affinity by lowering the pKa value of selector 2 and enhancing the hydrogen-bond donor capability as confirmed by spectroscopic titrations and DFT calculations. The selector is covalently attached to poly(4-vinylpyridine) (P4VP), which wraps single-walled carbon nanotubes (SWCNTs) (i.e., P4VP-2-SWCNT) to transduce an electrical signal. As a result, continuous anion sensing was achieved with high sensitivity represented by a normalized resistance change of 101.9 ± 10.3% toward 16.7 mM AcO-, whereas negligible sensitivity was observed toward Cl-, Br-, and NO3-. The sensitivity transition was attributed to the internal charge transfer of 2 by deprotonation of the thiourea proton upon addition of AcO-.
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Affiliation(s)
- Seon-Jin Choi
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Division of Materials of Science and Engineering, Hanyang University, 222 Wangsimni-ro, Seongdong-gu, Seoul 04763, Republic of Korea
| | - Bora Yoon
- Institute for Soldier Nanotechnologies, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Optical and Electromagnetic Materials Team, U.S. Army Combat Capabilities Development Command-Soldier Center (CCDC-SC), Natick, Massachusetts 01760, United States
| | - Sibo Lin
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Institute for Soldier Nanotechnologies, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
| | - Timothy M Swager
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
- Institute for Soldier Nanotechnologies, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, United States
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Mahata S, Bhattacharya A, Kumar JP, Mandal BB, Manivannan V. Naked-eye detection of Pd2+ ion using a highly selective fluorescent heterocyclic probe by “turn-off” response and in-vitro live cell imaging. J Photochem Photobiol A Chem 2020. [DOI: 10.1016/j.jphotochem.2020.112441] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Zhang K, Xiong T, Wu F, Yue Q, Ji W, Yu P, Mao L. Real-time and in-situ intracellular ATP assay with polyimidazolium brush-modified nanopipette. Sci China Chem 2020. [DOI: 10.1007/s11426-020-9715-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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Ren TB, Wen SY, Wang L, Lu P, Xiong B, Yuan L, Zhang XB. Engineering a Reversible Fluorescent Probe for Real-Time Live-Cell Imaging and Quantification of Mitochondrial ATP. Anal Chem 2020; 92:4681-4688. [PMID: 32098468 DOI: 10.1021/acs.analchem.0c00506] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Real-time imaging and quantification of adenosine triphosphate (ATP) fluctuation in cells are significant for understanding the relationship between energy metabolism and cell functions. However, few synthetic fluorescent probes have been reported to tackle this challenge due to lack of accurate fluorescence readout and suitable response concentration. Herein we designed and synthesized a ratiometric fluorescent probe (Rh6G-ACFPN) for quantitatively detecting the fluctuation of mitochondrial ATP in living cells. Rh6G-ACFPN selectively and reversibly responds to ATP with an ideal dissociation constant (Kd) of 4.65 mM (3-10 mM: the range of mitochondrial ATP concentrations). Live-cell imaging allows us to directly monitor the dynamic changes of mitochondrial ATP in high temporal resolution. Moreover, for the first time, mitochondrial ATP in normal and cancer cells lines was successfully quantified and discriminated. These results demonstrate the versatility of Rh6G-ACFPN as a useful imaging tool to elucidate the function of mitochondrial ATP in living cells.
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Affiliation(s)
- Tian-Bing Ren
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Si-Yu Wen
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Lu Wang
- Department of Chemical Biology, Max Planck Institute for Medical Research, Jahnstrasse 29, Heidelberg 69120, Germany
| | - Peng Lu
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Bin Xiong
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Lin Yuan
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
| | - Xiao-Bing Zhang
- State Key Laboratory of Chemo/Biosensing and Chemometrics, College of Chemistry and Chemical Engineering, Hunan University, Changsha 410082, China
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Jiang S, Qiu J, Chen S, Guo H, Yang F. Double-detecting fluorescent sensor for ATP based on Cu 2+ and Zn 2+ response of hydrazono-bis-tetraphenylethylene. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2020; 227:117568. [PMID: 31654844 DOI: 10.1016/j.saa.2019.117568] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 09/12/2019] [Accepted: 09/24/2019] [Indexed: 06/10/2023]
Abstract
Although all kinds of sensors with unique detecting ability for one guest were reported, the fluorescence sensor with multiple detecting abilities was seldom presented. This work designed and synthesized a novel AIE fluorescence probe bearing double detecting for ATP based on Cu2+ and Zn2+ response of hydrazono-bis-tetraphenylethylene (Bis-TPE). Bis-TPE was prepared in 82% yield with simple procedure. It exhibited strong red AIE fluorescence based on the large conjugated electron effect in aqueous media. It showed outstanding selective sensing abilities for Cu2+ by strong fluorescence quenching and for Zn2+ by red-orange fluorescence change. The sensing mechanism of 1:1 stoichiometric ratios was confirmed by 1H NMR and MS study. The strong red fluorescence of Bis-TPE + Cu2+ system could be recovered by adding ATP. The orange fluorescence of Bis-TPE + Zn2+ system could be quenched by adding Cu2+ and then was recovered by adding ATP. These double detecting abilities for ATP with the "off-on" red fluorescence in Bis-TPE + Cu2+ system and "allochroic-off-on" orange fluorescence in Bis-TPE + Zn2++Cu2+ system were successfully applied to test Cu2+, Zn2+ and ATP in test paper and living cell imaging, displaying the good application prospects for sensing Cu2+, Zn2+ and double detecting ATP in the complicated environment.
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Affiliation(s)
- Shengjie Jiang
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350007, PR China
| | - Jiabin Qiu
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350007, PR China
| | - Shibing Chen
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350007, PR China
| | - Hongyu Guo
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350007, PR China
| | - Fafu Yang
- College of Chemistry and Materials, Fujian Normal University, Fuzhou, 350007, PR China; Fujian Key Laboratory of Polymer Materials, Fuzhou, 350007, PR China; Fujian Provincial Key Laboratory of Advanced Materials Oriented Chemical Engineering, Fuzhou, PR China.
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Pal S, Ghosh TK, Ghosh R, Mondal S, Ghosh P. Recent advances in recognition, sensing and extraction of phosphates: 2015 onwards. Coord Chem Rev 2020. [DOI: 10.1016/j.ccr.2019.213128] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
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Ramachandran M, Anandan S. Triazole appending ruthenium(ii) polypyridine complex for selective sensing of phosphate anions through C–H–anion interaction and copper(ii) ions via cancer cells. NEW J CHEM 2020. [DOI: 10.1039/d0nj00273a] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Selective fluorescence enhancement by H2PO4−/H2P2O72− anions and maximum fluorescence quenching by Cu2+ ions were attained upon treatment with different types of anions and cations, respectively.
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Affiliation(s)
| | - Sambandam Anandan
- Department of Chemistry
- National Institute of Technology
- Tiruchirappalli-620 015
- India
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Zhang J, Zhang J, Yan Z, Xie J. Recent Progress in Fluorescent Probes for Adenosine Triphosphate Based on Small Organic Molecules. CHINESE J ORG CHEM 2019. [DOI: 10.6023/cjoc201905024] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
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