1
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van Venrooy A, Wyderka AM, García-López V, Alemany LB, Martí AA, Tour JM. Probing the Rotary Cycle of Amine-Substituted Molecular Motors. J Org Chem 2023; 88:762-770. [PMID: 36622748 DOI: 10.1021/acs.joc.2c01457] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
An understanding of the rotary cycle of molecular motors (MMs), a key component of an approach to opening cells using mechanical motion, is important in furthering the research. Nuclear magnetic resonance (NMR) spectroscopy was used for in situ analysis of illuminated light-active MMs. We found that the presence of a N,N-dimethylethylenediamine in a position conjugated to the central olefin results in changes to the rotation of a second-generation Feringa-type MM. Importantly, the addition decreases the photostability of the compound. The parent compound 1 can withstand >2 h of illumination with no signs of decomposition, while the amino 7 decomposes after 10 min. We found that the degradation can be mitigated by implementing the simple techniques of modulating the light dose, dilution, and stirring the sample while illuminating. Additionally, the presence of moisture affects the rate of the motor's rotation. The addition of the amino group to 1, without moisture present, makes the rotation of motor 7 three times slower than the unfunctionalized parent compound. We also report the use of a method that can be used to determine the molar extinction coefficient of a light-generated metastable species. This method can be used when in situ NMR illumination is not available.
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Affiliation(s)
- Alexis van Venrooy
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Aaron M Wyderka
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Víctor García-López
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
| | - Lawrence B Alemany
- Department of Chemistry, Rice University, Houston, Texas 77005, United States.,Shared Equipment Authority, Rice University, Houston, Texas 77005, United States
| | - Angel A Martí
- Department of Chemistry, Rice University, Houston, Texas 77005, United States.,Smalley-Curl Institute, Rice University, Houston, Texas 77005, United States.,Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States
| | - James M Tour
- Department of Chemistry, Rice University, Houston, Texas 77005, United States.,Smalley-Curl Institute, Rice University, Houston, Texas 77005, United States.,Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States.,NanoCarbon Center and the Welch Institute for Advanced Materials, Rice University, Houston, Texas 77005, United States
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2
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Bach NN, Josef V, Maid H, Dube H. Active Mechanical Threading by a Molecular Motor. Angew Chem Int Ed Engl 2022; 61:e202201882. [PMID: 35146857 PMCID: PMC9314141 DOI: 10.1002/anie.202201882] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2022] [Indexed: 12/15/2022]
Abstract
Molecular motors transform external energy input into directional motions and offer exquisite precision for nano‐scale manipulations. To make full use of molecular motor capacities, their directional motions need to be transmitted and used for powering downstream molecular events. Here we present a macrocyclic molecular motor structure able to perform repetitive molecular threading of a flexible tetraethylene glycol chain through the macrocycle. This mechanical threading event is actively powered by the motor and leads to a direct translation of the unidirectional motor rotation into unidirectional translation motion (chain versus ring). The mechanism of the active mechanical threading is elucidated and the actual threading step is identified as a combined helix inversion and threading event. The established molecular machine function resembles the crucial step of macroscopic weaving or sewing processes and therefore offers a first entry point to a “molecular knitting” counterpart.
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Affiliation(s)
- Nicolai N Bach
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Department of Chemistry and Pharmacy, Nikolaus-Fiebiger-Str. 10, 91058, Erlangen, Germany
| | - Verena Josef
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Department of Chemistry and Pharmacy, Nikolaus-Fiebiger-Str. 10, 91058, Erlangen, Germany
| | - Harald Maid
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Department of Chemistry and Pharmacy, Nikolaus-Fiebiger-Str. 10, 91058, Erlangen, Germany
| | - Henry Dube
- Friedrich-Alexander-Universität Erlangen-Nürnberg, Department of Chemistry and Pharmacy, Nikolaus-Fiebiger-Str. 10, 91058, Erlangen, Germany
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3
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Bach NN, Josef V, Maid H, Dube H. Active Mechanical Threading by a Molecular Motor. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202201882] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Nicolai N. Bach
- FAU: Friedrich-Alexander-Universitat Erlangen-Nurnberg Chemistry and Pharmacy GERMANY
| | - Verena Josef
- FAU: Friedrich-Alexander-Universitat Erlangen-Nurnberg Chemistry and Pharmacy GERMANY
| | - Harald Maid
- FAU: Friedrich-Alexander-Universitat Erlangen-Nurnberg Chemistry and Pharmacy GERMANY
| | - Henry Dube
- Friedrich-Alexander-Universitat Erlangen-Nurnberg Chemistry and Pharmacy Nikolaus-Fiebiger-Str. 10 91058 Erlangen GERMANY
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4
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Wilcken R, Gerwien A, Huber LA, Dube H, Riedle E. Quantitative
In‐Situ
NMR Illumination for Excitation and Kinetic Analysis of Molecular Motor Intermediates. CHEMPHOTOCHEM 2022. [DOI: 10.1002/cptc.202100232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Roland Wilcken
- Lehrstuhl für BioMolekulare Optik Ludwig-Maximilians-Universität München Oettingenstr. 67 80538 München Germany
- Chair of Organic Chemistry I Friedrich-Alexander-Universität Erlangen-Nürnberg Department of Chemistry and Pharmacy Nikolaus-Fiebiger-Str. 10 91058 Erlangen Germany
| | - Aaron Gerwien
- Department Chemie Ludwig-Maximilians-Universität München Butenandtstr. 5–13 (Haus F) 81377 München Germany
| | - Ludwig Alexander Huber
- Department Chemie Ludwig-Maximilians-Universität München Butenandtstr. 5–13 (Haus F) 81377 München Germany
| | - Henry Dube
- Department Chemie Ludwig-Maximilians-Universität München Butenandtstr. 5–13 (Haus F) 81377 München Germany
- Chair of Organic Chemistry I Friedrich-Alexander-Universität Erlangen-Nürnberg Department of Chemistry and Pharmacy Nikolaus-Fiebiger-Str. 10 91058 Erlangen Germany
| | - Eberhard Riedle
- Lehrstuhl für BioMolekulare Optik Ludwig-Maximilians-Universität München Oettingenstr. 67 80538 München Germany
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5
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Bruekers JP, Bakker R, White PB, Tinnemans P, Elemans JA, Nolte RJ. Stabilization of thermally unstable photoisomers of pyridinium-functionalized hemithioindigo switches by host-guest complexation. Tetrahedron 2021. [DOI: 10.1016/j.tet.2021.132499] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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6
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Pooler DRS, Lubbe AS, Crespi S, Feringa BL. Designing light-driven rotary molecular motors. Chem Sci 2021; 12:14964-14986. [PMID: 34909140 PMCID: PMC8612399 DOI: 10.1039/d1sc04781g] [Citation(s) in RCA: 73] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Accepted: 10/14/2021] [Indexed: 01/04/2023] Open
Abstract
The ability to induce and amplify motion at the molecular scale has seen tremendous progress ranging from simple molecular rotors to responsive materials. In the two decades since the discovery of light-driven rotary molecular motors, the development of these molecules has been extensive; moving from the realm of molecular chemistry to integration into dynamic molecular systems. They have been identified as actuators holding great potential to precisely control the dynamics of nanoscale devices, but integrating molecular motors effectively into evermore complex artificial molecular machinery is not trivial. Maximising efficiency without compromising function requires conscious and judicious selection of the structures used. In this perspective, we focus on the key aspects of motor design and discuss how to manipulate these properties without impeding motor integrity. Herein, we describe these principles in the context of molecular rotary motors featuring a central double bond axle and emphasise the strengths and weaknesses of each design, providing a comprehensive evaluation of all artificial light-driven rotary motor scaffolds currently present in the literature. Based on this discussion, we will explore the trajectory of research into the field of molecular motors in the coming years, including challenges to be addressed, potential applications, and future prospects.
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Affiliation(s)
- Daisy R S Pooler
- Stratingh Institute for Chemistry, Zernike Institute for Advanced Materials, University of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Anouk S Lubbe
- Stratingh Institute for Chemistry, Zernike Institute for Advanced Materials, University of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Stefano Crespi
- Stratingh Institute for Chemistry, Zernike Institute for Advanced Materials, University of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Ben L Feringa
- Stratingh Institute for Chemistry, Zernike Institute for Advanced Materials, University of Groningen Nijenborgh 4 9747 AG Groningen The Netherlands
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7
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Volarić J, Szymanski W, Simeth NA, Feringa BL. Molecular photoswitches in aqueous environments. Chem Soc Rev 2021; 50:12377-12449. [PMID: 34590636 PMCID: PMC8591629 DOI: 10.1039/d0cs00547a] [Citation(s) in RCA: 132] [Impact Index Per Article: 44.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Indexed: 12/17/2022]
Abstract
Molecular photoswitches enable dynamic control of processes with high spatiotemporal precision, using light as external stimulus, and hence are ideal tools for different research areas spanning from chemical biology to smart materials. Photoswitches are typically organic molecules that feature extended aromatic systems to make them responsive to (visible) light. However, this renders them inherently lipophilic, while water-solubility is of crucial importance to apply photoswitchable organic molecules in biological systems, like in the rapidly emerging field of photopharmacology. Several strategies for solubilizing organic molecules in water are known, but there are not yet clear rules for applying them to photoswitchable molecules. Importantly, rendering photoswitches water-soluble has a serious impact on both their photophysical and biological properties, which must be taken into consideration when designing new systems. Altogether, these aspects pose considerable challenges for successfully applying molecular photoswitches in aqueous systems, and in particular in biologically relevant media. In this review, we focus on fully water-soluble photoswitches, such as those used in biological environments, in both in vitro and in vivo studies. We discuss the design principles and prospects for water-soluble photoswitches to inspire and enable their future applications.
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Affiliation(s)
- Jana Volarić
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
| | - Wiktor Szymanski
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
- Department of Radiology, Medical Imaging Center, University of Groningen, University Medical Centre Groningen, Hanzeplein 1, 9713 GZ Groningen, The Netherlands
| | - Nadja A Simeth
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
- Institute for Organic and Biomolecular Chemistry, University of Göttingen, Tammannstr. 2, 37077 Göttingen, Germany
| | - Ben L Feringa
- Centre for Systems Chemistry, Stratingh Institute for Chemistry, Faculty for Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.
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8
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Grill K, Dube H. Supramolecular Relay-Control of Organocatalysis with a Hemithioindigo-Based Molecular Motor. J Am Chem Soc 2020; 142:19300-19307. [DOI: 10.1021/jacs.0c09519] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Kerstin Grill
- Department of Chemistry and Center for Integrated Protein Science CIPSM, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
| | - Henry Dube
- Department of Chemistry and Center for Integrated Protein Science CIPSM, Ludwig-Maximilians-Universität München, Butenandtstr. 5-13, 81377 München, Germany
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9
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Köttner L, Schildhauer M, Wiedbrauk S, Mayer P, Dube H. Oxidized Hemithioindigo Photoswitches-Influence of Oxidation State on (Photo)physical and Photochemical Properties. Chemistry 2020; 26:10712-10718. [PMID: 32485011 PMCID: PMC7496871 DOI: 10.1002/chem.202002176] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2020] [Revised: 05/28/2020] [Indexed: 11/05/2022]
Abstract
The photophysical and photochemical properties of sulfoxide and sulfone derivatives of hemithioindigo photoswitches are scrutinized and compared to the unoxidized parent chromophores. Oxidation results in significantly blue-shifted absorptions and mostly reduction of photochromism while thermal stabilities of individual isomers remain largely unaltered. Effective photoswitching takes place at shorter wavelengths compared to parent hemithioindigos and high isomeric yields can be obtained reversibly in the respective photostationary states. Reversible solid-state photoswitching is observed for a twisted sulfone derivative accompanied by visible color changes. These results establish oxidized hemithioindigo photoswitches as promising and versatile tools for robust light-control of molecular behavior for a wide range of applications.
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Affiliation(s)
- Laura Köttner
- Department of Chemistry and Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität MünchenButenandtstr. 5–1381377München
| | - Monika Schildhauer
- Department of Chemistry and Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität MünchenButenandtstr. 5–1381377München
| | - Sandra Wiedbrauk
- Department of Chemistry and Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität MünchenButenandtstr. 5–1381377München
| | - Peter Mayer
- Department of Chemistry and Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität MünchenButenandtstr. 5–1381377München
| | - Henry Dube
- Department of Chemistry and Center for Integrated Protein Science CIPSMLudwig-Maximilians-Universität MünchenButenandtstr. 5–1381377München
- Department of Chemistry and PharmacyFriedrich-Alexander-Universität Erlangen-NürnbergNikolaus-Fiebiger-Str. 1091058Erlangen
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10
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García-López V, Liu D, Tour JM. Light-Activated Organic Molecular Motors and Their Applications. Chem Rev 2019; 120:79-124. [PMID: 31849216 DOI: 10.1021/acs.chemrev.9b00221] [Citation(s) in RCA: 114] [Impact Index Per Article: 22.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Molecular motors are at the heart of cellular machinery, and they are involved in converting chemical and light energy inputs into efficient mechanical work. From a synthetic perspective, the most advanced molecular motors are rotators that are activated by light wherein a molecular subcomponent rotates unidirectionally around an axis. The mechanical work produced by arrays of molecular motors can be used to induce a macroscopic effect. Light activation offers advantages over biological chemically activated molecular motors because one can direct precise spatiotemporal inputs while conducting reactions in the gas phase, in solution and in vacuum, while generating no chemical byproducts or waste. In this review, we describe the origins of the first light-activated rotary motors and their modes of function, the structural modifications that led to newer motor designs with optimized rotary properties at variable activation wavelengths. Presented are molecular motor attachments to surfaces, their insertion into supramolecular structures and photomodulating materials, their use in catalysis, and their action in biological environments to produce exciting new prospects for biomedicine.
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11
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Gerwien A, Mayer P, Dube H. Green light powered molecular state motor enabling eight-shaped unidirectional rotation. Nat Commun 2019; 10:4449. [PMID: 31575868 PMCID: PMC6773862 DOI: 10.1038/s41467-019-12463-4] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2019] [Accepted: 09/10/2019] [Indexed: 11/09/2022] Open
Abstract
Molecular motors convert external energy into directional motions at the nano-scales. To date unidirectional circular rotations and linear motions have been realized but more complex directional trajectories remain unexplored on the molecular level. In this work we present a molecular motor powered by green light allowing to produce an eight-shaped geometry change during its unidirectional rotation around the central molecular axis. Motor motion proceeds in four different steps, which alternate between light powered double bond isomerizations and thermal hula-twist isomerizations. The result is a fixed sequence of populating four different isomers in a fully unidirectional trajectory possessing one crossing point. This motor system opens up unexplored avenues for the construction and mechanisms of molecular machines and will therefore not only significantly expand the toolbox of responsive molecular devices but also enable very different applications in the field of miniaturized technology than currently possible. Molecular motors have predominantly been limited to circular or linear directional motions. Here, the authors design a molecular motor that moves unidirectionally along a more complex figure-eight trajectory by a distinct four-step mechanism that alternates between photochemical and thermal reaction steps.
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Affiliation(s)
- Aaron Gerwien
- Department of Chemistry and Center for Integrated Protein Science CIPSM, Ludwig Maximilians-Universität München, Butenandtstrasse 5-13, 81377, München, Germany
| | - Peter Mayer
- Department of Chemistry and Center for Integrated Protein Science CIPSM, Ludwig Maximilians-Universität München, Butenandtstrasse 5-13, 81377, München, Germany
| | - Henry Dube
- Department of Chemistry and Center for Integrated Protein Science CIPSM, Ludwig Maximilians-Universität München, Butenandtstrasse 5-13, 81377, München, Germany.
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12
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Abstract
Directed motion at the nanoscale is a central attribute of life, and chemically driven motor proteins are nature's choice to accomplish it. Motivated and inspired by such bionanodevices, in the past few decades chemists have developed artificial prototypes of molecular motors, namely, multicomponent synthetic species that exhibit directionally controlled, stimuli-induced movements of their parts. In this context, photonic and redox stimuli represent highly appealing modes of activation, particularly from a technological viewpoint. Here we describe the evolution of the field of photo- and redox-driven artificial molecular motors, and we provide a comprehensive review of the work published in the past 5 years. After an analysis of the general principles that govern controlled and directed movement at the molecular scale, we describe the fundamental photochemical and redox processes that can enable its realization. The main classes of light- and redox-driven molecular motors are illustrated, with a particular focus on recent designs, and a thorough description of the functions performed by these kinds of devices according to literature reports is presented. Limitations, challenges, and future perspectives of the field are critically discussed.
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Affiliation(s)
- Massimo Baroncini
- CLAN-Center for Light Activated Nanostructures , Istituto ISOF-CNR , via Gobetti 101 , 40129 Bologna , Italy.,Dipartimento di Scienze e Tecnologie Agro-alimentari , Università di Bologna , viale Fanin 44 , 40127 Bologna , Italy
| | - Serena Silvi
- CLAN-Center for Light Activated Nanostructures , Istituto ISOF-CNR , via Gobetti 101 , 40129 Bologna , Italy.,Dipartimento di Chimica "G. Ciamician" , Università di Bologna , via Selmi 2 , 40126 Bologna , Italy
| | - Alberto Credi
- CLAN-Center for Light Activated Nanostructures , Istituto ISOF-CNR , via Gobetti 101 , 40129 Bologna , Italy.,Dipartimento di Scienze e Tecnologie Agro-alimentari , Università di Bologna , viale Fanin 44 , 40127 Bologna , Italy
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