1
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Razi SS, Marin-Luna M, Alajarin M, Martinez-Cuezva A, Berna J. Conjugated bis(enaminones) as effective templates for rotaxane assembly and their post-synthetic modifications. Commun Chem 2024; 7:170. [PMID: 39098851 DOI: 10.1038/s42004-024-01258-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2024] [Accepted: 07/26/2024] [Indexed: 08/06/2024] Open
Abstract
The development of efficient methods for the synthesis of mechanically interlocked compounds is currently considered a major challenge in supramolecular chemistry. Twofold vinylogous fumaramides, a class of conjugated bis(enaminones), successfully achieve the assembly of hydrogen-bonded amide-based rotaxanes, with a templating ability comparable to that of their parent fumaramide-based systems, showcasing full conversions and impressive yields up to 92%. Computational calculations offer a compelling explanation for the remarkable efficiency of these bis(enaminones) in driving the synthesis of unprecedented rotaxanes. The reactivity of these interlocked species was thoroughly investigated, revealing that a one-step double stopper-exchange process can be successfully performed while preserving the mechanical bond. This approach facilitates the formation of controllable rotaxanes, including a three-station molecular shuttle, whose assembly via a clipping methodology is highly unselective. The internal translational motion of this latter species has been successfully controlled in a reversible way by means of a cycloaddition/retrocycloaddition sequence.
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Affiliation(s)
- Syed S Razi
- Departamento de Química Orgánica, Facultad de Química, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100, Murcia, Spain
| | - Marta Marin-Luna
- Departamento de Química Orgánica, Facultad de Química, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100, Murcia, Spain
| | - Mateo Alajarin
- Departamento de Química Orgánica, Facultad de Química, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100, Murcia, Spain
| | - Alberto Martinez-Cuezva
- Departamento de Química Orgánica, Facultad de Química, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100, Murcia, Spain.
| | - Jose Berna
- Departamento de Química Orgánica, Facultad de Química, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100, Murcia, Spain.
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2
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Puigcerver J, Zamora-Gallego JM, Marin-Luna M, Martinez-Cuezva A, Berna J. Urea-Based [2]Rotaxanes as Effective Phase-Transfer Organocatalysts: Hydrogen-Bonding Cooperative Activation Enabled by the Mechanical Bond. J Am Chem Soc 2024. [PMID: 38975636 DOI: 10.1021/jacs.4c06630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/09/2024]
Abstract
We finely designed a set of [2]rotaxanes with urea threads and tested them as hydrogen-bonding phase-transfer catalysts in two different nucleophilic substitutions requiring the activation of the reactant fluoride anion. The [2]rotaxane bearing a fluorinated macrocycle and a fluorine-containing urea thread displayed significantly enhanced catalytic activity in comparison with the combination of both noninterlocked components. This fact highlights the notably beneficial role of the mechanical bond, cooperatively activating the processes through hydrogen-bonding interactions.
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Affiliation(s)
- Julio Puigcerver
- Departamento de Quimica Organica, Facultad de Quimica, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose M Zamora-Gallego
- Departamento de Quimica Organica, Facultad de Quimica, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100 Murcia, Spain
| | - Marta Marin-Luna
- Departamento de Quimica Organica, Facultad de Quimica, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100 Murcia, Spain
| | - Alberto Martinez-Cuezva
- Departamento de Quimica Organica, Facultad de Quimica, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose Berna
- Departamento de Quimica Organica, Facultad de Quimica, Regional Campus of International Excellence "Campus Mare Nostrum", Universidad de Murcia, E-30100 Murcia, Spain
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3
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McCarthy DR, Xu K, Schenkelberg ME, Balegamire NAN, Liang H, Bellino SA, Li J, Schneebeli ST. Kinetically controlled synthesis of rotaxane geometric isomers. Chem Sci 2024; 15:4860-4870. [PMID: 38550687 PMCID: PMC10967009 DOI: 10.1039/d3sc04412b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 01/24/2024] [Indexed: 04/30/2024] Open
Abstract
Geometric isomerism in mechanically interlocked systems-which arises when the axle of a mechanically interlocked molecule is oriented, and the macrocyclic component is facially dissymmetric-can provide enhanced functionality for directional transport and polymerization catalysis. We now introduce a kinetically controlled strategy to control geometric isomerism in [2]rotaxanes. Our synthesis provides the major geometric isomer with high selectivity, broadening synthetic access to such interlocked structures. Starting from a readily accessible [2]rotaxane with a symmetrical axle, one of the two stoppers is activated selectively for stopper exchange by the substituents on the ring component. High selectivities are achieved in these reactions, based on coupling the selective formation reactions leading to the major products with inversely selective depletion reactions for the minor products. Specifically, in our reaction system, the desired (major) product forms faster in the first step, while the undesired (minor) product subsequently reacts away faster in the second step. Quantitative 1H NMR data, fit to a detailed kinetic model, demonstrates that this effect (which is conceptually closely related to minor enantiomer recycling and related processes) can significantly improve the intrinsic selectivity of the reactions. Our results serve as proof of principle for how multiple selective reaction steps can work together to enhance the stereoselectivity of synthetic processes forming complex mechanically interlocked molecules.
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Affiliation(s)
- Dillon R McCarthy
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
| | - Ke Xu
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Mica E Schenkelberg
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Nils A N Balegamire
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Huiming Liang
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
| | - Shea A Bellino
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
| | - Jianing Li
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Severin T Schneebeli
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
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4
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Kauerhof D, Riebe J, Vonnemann CJ, Thiele M, Jansen D, Niemeyer J. Heterobifunctional rotaxanes featuring two chiral subunits - synthesis and application in asymmetric organocatalysis. Chem Commun (Camb) 2024; 60:2393-2396. [PMID: 38323328 DOI: 10.1039/d3cc05482a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
Rotaxanes can serve as scaffolds for the generation of bifunctional catalysts. We have now generated acid-base functionalized rotaxanes featuring two chiral subunits. The mechanical bond leads to increased reaction rates and also to strongly altered enantioselectivites in comparison to the non-interlocked control catalysts.
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Affiliation(s)
- Dana Kauerhof
- Faculty of Chemistry (Organic Chemistry) and Centre of Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitätsstr. 7, 45141 Essen, Germany.
| | - Jan Riebe
- Faculty of Chemistry (Organic Chemistry) and Centre of Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitätsstr. 7, 45141 Essen, Germany.
| | - Christoph J Vonnemann
- Faculty of Chemistry (Organic Chemistry) and Centre of Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitätsstr. 7, 45141 Essen, Germany.
| | - Maike Thiele
- Faculty of Chemistry (Organic Chemistry) and Centre of Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitätsstr. 7, 45141 Essen, Germany.
| | - Dennis Jansen
- Faculty of Chemistry (Organic Chemistry) and Centre of Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitätsstr. 7, 45141 Essen, Germany.
| | - Jochen Niemeyer
- Faculty of Chemistry (Organic Chemistry) and Centre of Nanointegration Duisburg-Essen (CENIDE), University of Duisburg-Essen, Universitätsstr. 7, 45141 Essen, Germany.
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5
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Puigcerver J, Marin-Luna M, Iglesias-Sigüenza J, Alajarin M, Martinez-Cuezva A, Berna J. Mechanically Planar-to-Point Chirality Transmission in [2]Rotaxanes. J Am Chem Soc 2024; 146:2882-2887. [PMID: 38266249 PMCID: PMC10859924 DOI: 10.1021/jacs.3c11611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 01/18/2024] [Accepted: 01/19/2024] [Indexed: 01/26/2024]
Abstract
Herein we describe an effective transmission of chirality, from mechanically planar chirality to point chirality, in hydrogen-bonded [2]rotaxanes. A highly selective mono-N-methylation of one (out of four) amide N atom at the macrocyclic counterpart of starting achiral rotaxanes generates mechanically planar chirality. Followed by chiral resolution, both enantiomers were subjected to a base-promoted intramolecular cyclization, where their interlocked threads were transformed into new lactam moieties. As a matter of fact, the mechanically planar chiral information was effectively transferred to the resulting stereocenters (covalent chirality) of the newly formed heterocycles. Upon removing the entwined macrocycle, the final lactams were obtained with high enantiopurity.
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Affiliation(s)
- Julio Puigcerver
- Departamento
de Quimica Organica, Facultad de Quimica, Regional Campus of International
Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Marta Marin-Luna
- Departamento
de Quimica Organica, Facultad de Quimica, Regional Campus of International
Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Javier Iglesias-Sigüenza
- Departamento
de Quimica Organica and Centro de Innovacion en Quimica Avanzada (ORFEO-CINQA), Universidad de Sevilla, E-41012 Sevilla, Spain
| | - Mateo Alajarin
- Departamento
de Quimica Organica, Facultad de Quimica, Regional Campus of International
Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Alberto Martinez-Cuezva
- Departamento
de Quimica Organica, Facultad de Quimica, Regional Campus of International
Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose Berna
- Departamento
de Quimica Organica, Facultad de Quimica, Regional Campus of International
Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
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6
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Jelínková K, Závodná A, Kaleta J, Janovský P, Zatloukal F, Nečas M, Prucková Z, Dastychová L, Rouchal M, Vícha R. Two Squares in a Barrel: An Axially Disubstituted Conformationally Rigid Aliphatic Binding Motif for Cucurbit[6]uril. J Org Chem 2023; 88:15615-15625. [PMID: 37882436 PMCID: PMC10661032 DOI: 10.1021/acs.joc.3c01556] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2023] [Revised: 09/15/2023] [Accepted: 10/13/2023] [Indexed: 10/27/2023]
Abstract
Novel binding motifs suitable for the construction of multitopic guest-based molecular devices (e.g., switches, sensors, data storage, and catalysts) are needed in supramolecular chemistry. No rigid, aliphatic binding motif that allows for axial disubstitution has been described for cucurbit[6]uril (CB6) so far. We prepared three model guests combining spiro[3.3]heptane and bicyclo[1.1.1]pentane centerpieces with imidazolium and ammonium termini. We described their binding properties toward CB6/7 and α-/β-CD using NMR, titration calorimetry, mass spectrometry, and single-crystal X-ray diffraction. We found that a bisimidazolio spiro[3.3]heptane guest forms inclusion complexes with CB6, CB7, and β-CD with respective association constants of 4.0 × 104, 1.2 × 1012, and 1.4 × 102. Due to less hindering terminal groups, the diammonio analogue forms more stable complexes with CB6 (K = 1.4 × 106) and CB7 (K = 3.8 × 1012). The bisimidazolio bicyclo[1.1.1]pentane guest forms a highly stable complex only with CB7 with a K value of 1.1 × 1011. The high selectivity of the new binding motifs implies promising potential in the construction of multitopic supramolecular components.
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Affiliation(s)
- Kristýna Jelínková
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí
2, Praha 16000, Czech Republic
| | - Aneta Závodná
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
| | - Jiří Kaleta
- Institute
of Organic Chemistry and Biochemistry of the Czech Academy of Sciences, Flemingovo náměstí
2, Praha 16000, Czech Republic
| | - Petr Janovský
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
| | - Filip Zatloukal
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
| | - Marek Nečas
- Department
of Chemistry, Faculty of Science, Masaryk
University, Kotlářská 2, Brno 602 00, Czech Republic
| | - Zdeňka Prucková
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
| | - Lenka Dastychová
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
| | - Michal Rouchal
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
| | - Robert Vícha
- Department
of Chemistry, Faculty of Technology, Tomas
Bata University in Zlín, Vavrečkova 5669, Zlín 760 01, Czech Republic
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7
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Koehler V, Gauthier M, Yao C, Fournel-Marotte K, Waelès P, Kauffmann B, Huc I, Coutrot F, Ferrand Y. [3]Foldarotaxane-mediated synthesis of an improbable [2]rotaxane. Chem Commun (Camb) 2022; 58:8618-8621. [PMID: 35786713 DOI: 10.1039/d2cc03066g] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The wrapping of an aromatic oligoamide helix around an active ester-containing [2]rotaxane enforced the sliding and the sequestration of the surrounding macrocycle around a part of the axle for which it has no formal affinity. The foldamer-mediated compartmentalization of the [2]rotaxane shuttle was subsequently used to prepare an improbable rotaxane.
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Affiliation(s)
- Victor Koehler
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248), Université de Bordeaux, CNRS, IPB, 2 rue Robert Escarpit, 33600, Pessac, France.
| | - Maxime Gauthier
- Supramolecular Machines and Archtectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France.
| | - Chenhao Yao
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248), Université de Bordeaux, CNRS, IPB, 2 rue Robert Escarpit, 33600, Pessac, France.
| | - Karine Fournel-Marotte
- Supramolecular Machines and Archtectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France.
| | - Philip Waelès
- Supramolecular Machines and Archtectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France.
| | - Brice Kauffmann
- Université de Bordeaux, CNRS, INSERM, UMS3033, IECB, 2 rue Robert Escarpit, 33600, Pessac, France
| | - Ivan Huc
- Department of Pharmacy, Ludwig-Maximilians-Universität, Butenandtstr. 5-13, 81377, München, Germany
| | - Frédéric Coutrot
- Supramolecular Machines and Archtectures Team, IBMM, Univ Montpellier, CNRS, ENSCM, Montpellier, France.
| | - Yann Ferrand
- Institut de Chimie et Biologie des Membranes et Nano-objets CBMN (UMR5248), Université de Bordeaux, CNRS, IPB, 2 rue Robert Escarpit, 33600, Pessac, France.
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8
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Kolodzeiski E, Amirjalayer S. Dynamic network of intermolecular interactions in metal-organic frameworks functionalized by molecular machines. SCIENCE ADVANCES 2022; 8:eabn4426. [PMID: 35776789 PMCID: PMC10883363 DOI: 10.1126/sciadv.abn4426] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Molecular machines enable external control of structural and dynamic phenomena at the atomic level. To efficiently transfer their tunable properties into designated functionalities, a detailed understanding of the impact of molecular embedding is needed. In particular, a comprehensive insight is fundamental to design hierarchical multifunctional systems that are inspired by biological cells. Here, we applied an on-the-fly trained force field to perform atomistic simulations of a systematically modified rotaxane functionalized metal-organic framework. Our atomistic studies reveal a symmetric and asymmetric interplay of the mechanically bonded rings (MBRs) within the framework depending on the local environment. As a result, their translational motion is modulated ranging from fast oscillatory behavior to cooperative and potentially directed shuttling. The derived picture of competitive interactions, which influence the operation mechanism of the MBRs embedded in these soft porous materials, promotes the development of responsive functional materials, which is a key step toward intelligent matter.
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Affiliation(s)
- Elena Kolodzeiski
- Physikalisches Institut, Westfälische Wilhelms-Universität, Wilhelm-Klemm-Straße 10, 48149 Münster, Germany
- Center for Nanotechnology, Heisenbergstraße 11, 48149 Münster, Germany
- Center for Multiscale Theory and Computation, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Straße 10, 48149 Münster, Germany
| | - Saeed Amirjalayer
- Physikalisches Institut, Westfälische Wilhelms-Universität, Wilhelm-Klemm-Straße 10, 48149 Münster, Germany
- Center for Nanotechnology, Heisenbergstraße 11, 48149 Münster, Germany
- Center for Multiscale Theory and Computation, Westfälische Wilhelms-Universität Münster, Wilhelm-Klemm-Straße 10, 48149 Münster, Germany
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9
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Tang Y, Luo Y, Xiang J, He Y, Fan Q. Rhodium‐Catalyzed ON‐OFF Switchable Hydrogenation Using a Molecular Shuttle Based on a [2]Rotaxane with a Phosphine Ligand. Angew Chem Int Ed Engl 2022; 61:e202200638. [DOI: 10.1002/anie.202200638] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Indexed: 12/18/2022]
Affiliation(s)
- Yu‐Ping Tang
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Yi‐Er Luo
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Jun‐Feng Xiang
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Yan‐Mei He
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
| | - Qing‐Hua Fan
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
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10
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New scaffold organocatalysts of chiral 3,2′-pyrrolidinyl spiro-oxindoles promoted enantioselective aldol condensation between isatins and acetone. Tetrahedron Lett 2022. [DOI: 10.1016/j.tetlet.2022.153780] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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11
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Tang Y, Luo Y, Xiang J, He Y, Fan Q. Rhodium‐Catalyzed ON‐OFF Switchable Hydrogenation Using a Molecular Shuttle Based on a [2]Rotaxane with a Phosphine Ligand. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202200638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yu‐Ping Tang
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Yi‐Er Luo
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Jun‐Feng Xiang
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
| | - Yan‐Mei He
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
| | - Qing‐Hua Fan
- Beijing National Laboratory for Molecular Sciences CAS Key Laboratory of Molecular Recognition and Function Institute of Chemistry Chinese Academy of Sciences (CAS) Beijing 100190 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 P. R. China
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12
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Heard AW, Suárez JM, Goldup SM. Controlling catalyst activity, chemoselectivity and stereoselectivity with the mechanical bond. Nat Rev Chem 2022; 6:182-196. [PMID: 37117433 DOI: 10.1038/s41570-021-00348-4] [Citation(s) in RCA: 37] [Impact Index Per Article: 18.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/25/2021] [Indexed: 12/16/2022]
Abstract
Mechanically interlocked molecules, such as rotaxanes and catenanes, are receiving increased attention as scaffolds for the development of new catalysts, driven by both their increasing accessibility and high-profile examples of the mechanical bond delivering desirable behaviours and properties. In this Review, we survey recent advances in the catalytic applications of mechanically interlocked molecules organized by the effect of the mechanical bond on key catalytic properties, namely, activity, chemoselectivity and stereoselectivity, and focus on how the mechanically bonded structure leads to the observed behaviour. Our aim is to inspire future investigations of mechanically interlocked catalysts, including those outside of the supramolecular community.
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13
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Rad N, Sashuk V. A light-gated regulation of the reaction site by a cucurbit[7]uril macrocycle. Chem Sci 2022; 13:12440-12444. [DOI: 10.1039/d2sc02077g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 10/10/2022] [Indexed: 11/21/2022] Open
Abstract
On–off competitive inhibition is presented. Photoswitchable pseudorotaxane controls the rate of self-reaction and product selectivity of external reactions.
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Affiliation(s)
- Nazar Rad
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Volodymyr Sashuk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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14
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David AHG, García–Cerezo P, Campaña AG, Santoyo–González F, Blanco V. Vinyl sulfonyl chemistry-driven unidirectional transport of a macrocycle through a [2]rotaxane. Org Chem Front 2022. [DOI: 10.1039/d1qo01491a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The pH- and chemically-driven unidirectional transport of a macrocycle through a [2]rotaxane based on the vinyl sulfonyl groups is reported.
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Affiliation(s)
- Arthur H. G. David
- Departamento de Química Orgánica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada (UGR), Avda. Fuente Nueva S/N, 18071 Granada, Spain
| | - Pablo García–Cerezo
- Departamento de Química Orgánica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada (UGR), Avda. Fuente Nueva S/N, 18071 Granada, Spain
| | - Araceli G. Campaña
- Departamento de Química Orgánica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada (UGR), Avda. Fuente Nueva S/N, 18071 Granada, Spain
| | - Francisco Santoyo–González
- Departamento de Química Orgánica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada (UGR), Avda. Fuente Nueva S/N, 18071 Granada, Spain
| | - Victor Blanco
- Departamento de Química Orgánica, Facultad de Ciencias, Unidad de Excelencia de Química Aplicada a Biomedicina y Medioambiente (UEQ), Universidad de Granada (UGR), Avda. Fuente Nueva S/N, 18071 Granada, Spain
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15
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Perez JDM, Alajarin M, Martinez-Cuezva A, Berna J. Modulating the Catalytic Activity by the Mechanical Bond: Organocatalysis with Polyamide [2]Rotaxanes bearing a Secondary Amino Function at the Thread. Org Chem Front 2022. [DOI: 10.1039/d2qo00481j] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The modulation of the catalytic activity of degenerate succinamide-based [2]rotaxanes by changes at their macrocyclic component is disclosed herein. These systems, bearing an acyclic secondary amine function at the thread...
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16
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Borodin O, Shchukin Y, Robertson CC, Richter S, von Delius M. Self-Assembly of Stimuli-Responsive [2]Rotaxanes by Amidinium Exchange. J Am Chem Soc 2021; 143:16448-16457. [PMID: 34559523 PMCID: PMC8517971 DOI: 10.1021/jacs.1c05230] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2021] [Indexed: 01/29/2023]
Abstract
Advances in supramolecular chemistry are often underpinned by the development of fundamental building blocks and methods enabling their interconversion. In this work, we report the use of an underexplored dynamic covalent reaction for the synthesis of stimuli-responsive [2]rotaxanes. The formamidinium moiety lies at the heart of these mechanically interlocked architectures, because it enables both dynamic covalent exchange and the binding of simple crown ethers. We demonstrated that the rotaxane self-assembly follows a unique reaction pathway and that the complex interplay between crown ether and thread can be controlled in a transient fashion by addition of base and fuel acid. Dynamic combinatorial libraries, when exposed to diverse nucleophiles, revealed a profound stabilizing effect of the mechanical bond as well as intriguing reactivity differences between seemingly similar [2]rotaxanes.
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Affiliation(s)
- Oleg Borodin
- Institute
of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Yevhenii Shchukin
- Institute
of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Craig C. Robertson
- Department
of Chemistry, University of Sheffield, Brook Hill, Sheffield S3 7HF, U.K.
| | - Stefan Richter
- Institute
of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
| | - Max von Delius
- Institute
of Organic Chemistry, Ulm University, Albert-Einstein-Allee 11, 89081 Ulm, Germany
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17
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Affiliation(s)
- Arthur H. G. David
- Department of Chemistry Northwestern University Evanston Illinois 60208 United States
| | - J. Fraser Stoddart
- Department of Chemistry Northwestern University Evanston Illinois 60208 United States
- School of Chemistry University of New South Wales Sydney NSW 2052 Australia
- Stoddart Institute of Molecular Science Department of Chemistry Zhejiang University Hangzhou 310021 China
- ZJU-Hangzhou Global Scientific and Technological Innovation Center Hangzhou 311215 China
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18
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Olivo G, Capocasa G, Del Giudice D, Lanzalunga O, Di Stefano S. New horizons for catalysis disclosed by supramolecular chemistry. Chem Soc Rev 2021; 50:7681-7724. [PMID: 34008654 DOI: 10.1039/d1cs00175b] [Citation(s) in RCA: 74] [Impact Index Per Article: 24.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The adoption of a supramolecular approach in catalysis promises to address a number of unmet challenges, ranging from activity (unlocking of novel reaction pathways) to selectivity (alteration of the innate selectivity of a reaction, e.g. selective functionalization of C-H bonds) and regulation (switch ON/OFF, sequential catalysis, etc.). Supramolecular tools such as reversible association and recognition, pre-organization of reactants and stabilization of transition states upon binding offer a unique chance to achieve the above goals disclosing new horizons whose potential is being increasingly recognized and used, sometimes reaching the degree of ripeness for practical use. This review summarizes the main developments that have opened such new frontiers, with the aim of providing a guide to researchers approaching the field. We focus on artificial supramolecular catalysts of defined stoichiometry which, under homogeneous conditions, unlock outcomes that are highly difficult if not impossible to attain otherwise, namely unnatural reactivity or selectivity and catalysis regulation. The different strategies recently explored in supramolecular catalysis are concisely presented, and, for each one, a single or very few examples is/are described (mainly last 10 years, with only milestone older works discussed). The subject is divided into four sections in light of the key design principle: (i) nanoconfinement of reactants, (ii) recognition-driven catalysis, (iii) catalysis regulation by molecular machines and (iv) processive catalysis.
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Affiliation(s)
- Giorgio Olivo
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Giorgio Capocasa
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Daniele Del Giudice
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Osvaldo Lanzalunga
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
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19
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Gualandi L, Franchi P, Mezzina E, Goldup SM, Lucarini M. Spin-labelled mechanically interlocked molecules as models for the interpretation of biradical EPR spectra. Chem Sci 2021; 12:8385-8393. [PMID: 34221319 PMCID: PMC8221063 DOI: 10.1039/d1sc01462e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 05/14/2021] [Indexed: 12/20/2022] Open
Abstract
Biradical spin probes can provide detailed information about the distances between molecules/regions of molecules because the through-space coupling of radical centres, characterised by J, is strongly distance dependent. However, if the system can adopt multiple configurations, as is common in supramolecular complexes, the shape of the EPR spectrum is influenced not only by J but also the rate of exchange between different states. In practice, it is often hard to separate these variables and as a result, the effect of the latter is sometimes overlooked. To demonstrate this challenge unequivocally we synthesised rotaxane biradicals containing nitronyl nitroxide units at the termini of their axles. The rotaxanes exchange between the available biradical conformations more slowly than the corresponding non-interlocked axles but, despite this, in some cases, the EPR spectra of the axle and rotaxane remain remarkably similar. Detailed analysis allowed us to demonstrate that the similar EPR spectral shapes result from different combinations of J and rates of conformational interconversion, a phenomenon suggested theoretically more than 50 years ago. This work reinforces the idea that thorough analysis must be performed when interpreting the spectra of biradicals employed as spin probes in solution.
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Affiliation(s)
- Lorenzo Gualandi
- Department of Chemistry "Giacomo Ciamician", University of Bologna Via San Giacomo 11 Bologna Italy
| | - Paola Franchi
- Department of Chemistry "Giacomo Ciamician", University of Bologna Via San Giacomo 11 Bologna Italy
| | - Elisabetta Mezzina
- Department of Chemistry "Giacomo Ciamician", University of Bologna Via San Giacomo 11 Bologna Italy
| | - Stephen M Goldup
- Department of Chemistry, University of Southampton University Road, Highfield Southampton UK
| | - Marco Lucarini
- Department of Chemistry "Giacomo Ciamician", University of Bologna Via San Giacomo 11 Bologna Italy
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20
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Abstract
Mechanically interlocked molecules (MIMs) have gained attention in the field of catalysis due to their unique molecular properties. Central to MIMs, rotaxanes are highly promising and attractive supramolecular catalysts due to their unique three-dimensional structures and the flexibility of their subcomponents. This Minireview discusses the use of rotaxanes in organocatalysis and transition-metal catalysis.
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Affiliation(s)
- Carel Kwamen
- Faculty of ChemistryOrganic Chemistry and Center for NanointegrationDuisburg- Essen (CENIDE)University of Duisburg-EssenUniversitätsstrasse 745141EssenGermany
| | - Jochen Niemeyer
- Faculty of ChemistryOrganic Chemistry and Center for NanointegrationDuisburg- Essen (CENIDE)University of Duisburg-EssenUniversitätsstrasse 745141EssenGermany
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21
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Perez JDM, Puigcerver J, Orlando T, Pastor A, Martins MAP, Alajarin M, Martinez-Cuezva A, Berna J. Mechanical bonding activation in rotaxane-based organocatalysts. Org Chem Front 2021. [DOI: 10.1039/d1qo00789k] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Interlocked organocatalysts show enhanced catalytic performance when compared with their non-interlocked threads.The ring cooperatively activates the substrates, facilitating the formation and stabilization of catalytically active intermediates.
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Affiliation(s)
- Jesus de Maria Perez
- Departamento de Química Orgánica
- Facultad de Química
- Regional Campus of International Excellence “Campus Mare Nostrum”
- Universidad de Murcia
- Murcia
| | - Julio Puigcerver
- Departamento de Química Orgánica
- Facultad de Química
- Regional Campus of International Excellence “Campus Mare Nostrum”
- Universidad de Murcia
- Murcia
| | - Tainara Orlando
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Departamento de Química
- Universidade Federal de Santa Maria
- 97105-900 Santa Maria-RS
- Brazil
| | - Aurelia Pastor
- Departamento de Química Orgánica
- Facultad de Química
- Regional Campus of International Excellence “Campus Mare Nostrum”
- Universidad de Murcia
- Murcia
| | - Marcos A. P. Martins
- Núcleo de Química de Heterociclos (NUQUIMHE)
- Departamento de Química
- Universidade Federal de Santa Maria
- 97105-900 Santa Maria-RS
- Brazil
| | - Mateo Alajarin
- Departamento de Química Orgánica
- Facultad de Química
- Regional Campus of International Excellence “Campus Mare Nostrum”
- Universidad de Murcia
- Murcia
| | - Alberto Martinez-Cuezva
- Departamento de Química Orgánica
- Facultad de Química
- Regional Campus of International Excellence “Campus Mare Nostrum”
- Universidad de Murcia
- Murcia
| | - Jose Berna
- Departamento de Química Orgánica
- Facultad de Química
- Regional Campus of International Excellence “Campus Mare Nostrum”
- Universidad de Murcia
- Murcia
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22
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Schmittel M, Howlader P. Toward Molecular Cybernetics - the Art of Communicating Chemical Systems. CHEM REC 2020; 21:523-543. [PMID: 33350570 DOI: 10.1002/tcr.202000126] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2020] [Revised: 11/27/2020] [Accepted: 11/30/2020] [Indexed: 11/10/2022]
Abstract
The emerging field of molecular cybernetics has the potential to widely broaden our perception of chemistry. Chemistry will develop beyond its current focus that is mainly concerned with single transformations, pure compounds, and/or defined mixtures. On this way, chemistry will become autonomous, networked and smart through communicating molecules each of which serves a control engineering purpose, like the set of wheels in the machinery of life. The present personal account describes our latest developments in this field.
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Affiliation(s)
- Michael Schmittel
- Center of Micro and Nanochemistry and Engineering, Organische Chemie I, University of Siegen, Adolf-Reichwein Str. 2, 57068, Siegen, Germany
| | - Prodip Howlader
- Center of Micro and Nanochemistry and Engineering, Organische Chemie I, University of Siegen, Adolf-Reichwein Str. 2, 57068, Siegen, Germany
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23
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Martinez-Cuezva A, Pastor A, Marin-Luna M, Diaz-Marin C, Bautista D, Alajarin M, Berna J. Cyclization of interlocked fumaramides into β-lactams: experimental and computational mechanistic assessment of the key intercomponent proton transfer and the stereocontrolling active pocket. Chem Sci 2020; 12:747-756. [PMID: 34163808 PMCID: PMC8178992 DOI: 10.1039/d0sc05757f] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
A detailed mechanistic study of the diastereoselective CsOH-promoted cyclization of interlocked fumaramides to give β-lactams is described. The mechanistic analysis comprises the experimental evaluation of the structure-reactivity relationship for a wide range of fumaramides [2]rotaxanes (Hammet-plots), KIE studies with deuterium-labelled interlocked fumaramides and computational analysis of two alternative mechanistic pathways for the cyclization process. The obtained results confirm that: (a) the rate-determining step is the deprotonation of the N-benzyl group of the thread by the amidate group of the macrocycle generated by the external base, (b) the polyamide macrocycle plays an important role not only as activating element but also as the stereodifferenciating factor responsible for the observed diastereoselection and (c) the higher flexibility of the adamantyl core speeds up the cyclization process in diadamantyl-derived rotaxanes. A mechanistic study of the diastereoselective cyclization of interlocked fumaramides to give β-lactams unveils the key factors for successfully taming the process.![]()
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Affiliation(s)
- Alberto Martinez-Cuezva
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Regional Campus of International Excellence "Campus Mare Nostrum" 30100 Murcia Spain
| | - Aurelia Pastor
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Regional Campus of International Excellence "Campus Mare Nostrum" 30100 Murcia Spain
| | - Marta Marin-Luna
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Regional Campus of International Excellence "Campus Mare Nostrum" 30100 Murcia Spain
| | - Carmen Diaz-Marin
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Regional Campus of International Excellence "Campus Mare Nostrum" 30100 Murcia Spain
| | | | - Mateo Alajarin
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Regional Campus of International Excellence "Campus Mare Nostrum" 30100 Murcia Spain
| | - Jose Berna
- Department of Organic Chemistry, Faculty of Chemistry, University of Murcia, Regional Campus of International Excellence "Campus Mare Nostrum" 30100 Murcia Spain
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24
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25
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Martinez-Cuezva A, Saura-Sanmartin A, Alajarin M, Berna J. Mechanically Interlocked Catalysts for Asymmetric Synthesis. ACS Catal 2020. [DOI: 10.1021/acscatal.0c02032] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Alberto Martinez-Cuezva
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Adrian Saura-Sanmartin
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Mateo Alajarin
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
| | - Jose Berna
- Departamento de Quı́mica Orgánica, Facultad de Quı́mica, Regional Campus of International Excellence “Campus Mare Nostrum”, Universidad de Murcia, E-30100 Murcia, Spain
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