1
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Lingas R, Charistos ND, Muñoz-Castro A. Borospherene in the Nanohoop: Complexation and Aromaticity of Neutral and Dioxidized Cycloparaphenylene Supramolecules with B40 and C60 Fullerenes. Chemistry 2024; 30:e202402027. [PMID: 38923129 DOI: 10.1002/chem.202402027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Revised: 06/24/2024] [Accepted: 06/24/2024] [Indexed: 06/28/2024]
Abstract
Supramolecular complexes of carbon nanohoops with fullerenes play a key role for the design of novel nanomaterials with technological applications. Herein we investigate with density functional theory (DFT) methods the capability of neutral and dioxidized cycloparaphenylenes (CPPs) to encapsulate all-boron fullerene B40. Our results show that [9]CPP and [10]CPP are feasible host candidates to encapsulate B40 displaying comparable complexation energies with the all-carbon analog [10]CPP⊃C60. Upon dioxidation the host-guest interactions are not affected, whereas the positive charge is delocalized on the CPPs leading to global aromatic character of the hosts. Consequently, the dicationic complexes [n]CPP2+⊃B40 and [10]CPP2+⊃C60 display augmented global shielding cones that strongly shield the guests, as manifested by large upfield shifts in 11B-NMR and 13C-NMR signals. Hence, CPP complexes with carbon fullerenes can be extended borospherene B40 host-guest complexes, as well as to doubly oxidized species stabilized by global host aromaticity, expanding our understanding of carbon nanohoop complexes to boron-based fullerenes.
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Affiliation(s)
- Rafael Lingas
- Department of Chemistry, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece
| | - Nickolas D Charistos
- Department of Chemistry, Aristotle University of Thessaloniki, Thessaloniki, 54124, Greece
| | - Alvaro Muñoz-Castro
- Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Bellavista 7, Santiago, 8420524, Chile
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2
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Roy R, Brouillac C, Jacques E, Quinton C, Poriel C. π-Conjugated Nanohoops: A New Generation of Curved Materials for Organic Electronics. Angew Chem Int Ed Engl 2024; 63:e202402608. [PMID: 38744668 DOI: 10.1002/anie.202402608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2024] [Revised: 05/13/2024] [Accepted: 05/14/2024] [Indexed: 05/16/2024]
Abstract
Nanohoops, cyclic association of π-conjugated systems to form a hoop-shaped molecule, have been widely developed in the last 15 years. Beyond the synthetic challenge, the strong interest towards these molecules arises from their radially oriented π-orbitals, which provide singular properties to these fascinating structures. Thanks to their particular cylindrical arrangement, this new generation of curved molecules have been already used in many applications such as host-guest complexation, biosensing, bioimaging, solid-state emission and catalysis. However, their potential in organic electronics has only started to be explored. From the first incorporation as an emitter in a fluorescent organic light emitting diode (OLED), to the recent first incorporation as a host in phosphorescent OLEDs or as charge transporter in organic field-effect transistors and in organic photovoltaics, this field has shown important breakthroughs in recent years. These findings have revealed that curved materials can play a key role in the future and can even be more efficient than their linear counterparts. This can have important repercussions for the future of electronics. Time has now come to overview the different nanohoops used to date in electronic devices in order to stimulate the future molecular designs of functional materials based on these macrocycles.
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Affiliation(s)
- Rupam Roy
- Univ Rennes, CNRS, ISCR-UMR CNRS 6226, F-35000, Rennes, France
- Department of Chemistry, University of Florida, Gainesville, Florida, United States, 32603
| | | | | | | | - Cyril Poriel
- Univ Rennes, CNRS, ISCR-UMR CNRS 6226, F-35000, Rennes, France
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3
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Krasley A, Li E, Galeana JM, Bulumulla C, Beyene AG, Demirer GS. Carbon Nanomaterial Fluorescent Probes and Their Biological Applications. Chem Rev 2024; 124:3085-3185. [PMID: 38478064 PMCID: PMC10979413 DOI: 10.1021/acs.chemrev.3c00581] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2023] [Revised: 02/01/2024] [Accepted: 02/09/2024] [Indexed: 03/28/2024]
Abstract
Fluorescent carbon nanomaterials have broadly useful chemical and photophysical attributes that are conducive to applications in biology. In this review, we focus on materials whose photophysics allow for the use of these materials in biomedical and environmental applications, with emphasis on imaging, biosensing, and cargo delivery. The review focuses primarily on graphitic carbon nanomaterials including graphene and its derivatives, carbon nanotubes, as well as carbon dots and carbon nanohoops. Recent advances in and future prospects of these fields are discussed at depth, and where appropriate, references to reviews pertaining to older literature are provided.
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Affiliation(s)
- Andrew
T. Krasley
- Janelia
Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, Virginia 20147, United States
| | - Eugene Li
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E. California Boulevard, Pasadena, California 91125, United States
| | - Jesus M. Galeana
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E. California Boulevard, Pasadena, California 91125, United States
| | - Chandima Bulumulla
- Janelia
Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, Virginia 20147, United States
| | - Abraham G. Beyene
- Janelia
Research Campus, Howard Hughes Medical Institute, 19700 Helix Drive, Ashburn, Virginia 20147, United States
| | - Gozde S. Demirer
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, 1200 E. California Boulevard, Pasadena, California 91125, United States
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4
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Huang X, Gan PY, Gao FW, Su ZM. Tuning optical properties of π-conjugated double nanohoops under external electric field stimuli-responsiveness. Phys Chem Chem Phys 2024; 26:8716-8723. [PMID: 38416055 DOI: 10.1039/d3cp05504c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
Abstract
Carbon nanorings have attracted substantial interest from synthetic chemists due to their unique topological structures and distinct physical properties. An intriguing π-conjugated double-nanoring structure, denoted as [8]CPP-[10]cyclacene, was constructed via the integration of [8]cycloparaphenylene ([8]CPP) into [10]cyclacene. Using the external electric field stimuli-responsiveness of [8]CPP-[10]cyclacene, directional charge transfer can be induced, resulting in the emergence of intriguing properties. The effects of the external electric field in three specific directions were explored, vertically in the [8]CPP unit (Fy), vertically in the [10]cyclacene unit (Fz), and horizontally along the double nanorings diameter (Fx). Interestingly, the external electric field vertically to the [10]cyclacene unit significantly enhanced the first hyperpolarizability (βtot) compared to that vertically to the [8]CPP unit. Notably, [8]CPP-[10]cyclacene under Fx exhibited significantly larger the βtot values (1.48 × 105 a.u.) than those of vertical Fy and Fz. This work opens up a wide range of nonlinear optics, making it a compelling area to explore in the field of carbon nanomaterials.
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Affiliation(s)
- Xiao Huang
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
| | - Ping-Yao Gan
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
| | - Feng-Wei Gao
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
- Chongqing Research Institute, Changchun University of Science and Technology, No. 618 Liangjiang Avenue, Longxing Town, Yubei District, Chongqing City 401135, China.
| | - Zhong-Min Su
- School of Chemistry and Environmental Engineering, Changchun University of Science and Technology, 7989 Weixing Road, Changchun 130012, China
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, College of Chemistry, Jilin University, Changchun 130021, China.
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5
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Thaggard GC, Park KC, Lim J, Maldeni Kankanamalage BKP, Haimerl J, Wilson GR, McBride MK, Forrester KL, Adelson ER, Arnold VS, Wetthasinghe ST, Rassolov VA, Smith MD, Sosnin D, Aprahamian I, Karmakar M, Bag SK, Thakur A, Zhang M, Tang BZ, Castaño JA, Chaur MN, Lerch MM, Fischer RA, Aizenberg J, Herges R, Lehn JM, Shustova NB. Breaking the photoswitch speed limit. Nat Commun 2023; 14:7556. [PMID: 37985777 PMCID: PMC10660956 DOI: 10.1038/s41467-023-43405-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 11/07/2023] [Indexed: 11/22/2023] Open
Abstract
The forthcoming generation of materials, including artificial muscles, recyclable and healable systems, photochromic heterogeneous catalysts, or tailorable supercapacitors, relies on the fundamental concept of rapid switching between two or more discrete forms in the solid state. Herein, we report a breakthrough in the "speed limit" of photochromic molecules on the example of sterically-demanding spiropyran derivatives through their integration within solvent-free confined space, allowing for engineering of the photoresponsive moiety environment and tailoring their photoisomerization rates. The presented conceptual approach realized through construction of the spiropyran environment results in ~1000 times switching enhancement even in the solid state compared to its behavior in solution, setting a record in the field of photochromic compounds. Moreover, integration of two distinct photochromic moieties in the same framework provided access to a dynamic range of rates as well as complementary switching in the material's optical profile, uncovering a previously inaccessible pathway for interstate rapid photoisomerization.
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Affiliation(s)
- Grace C Thaggard
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Kyoung Chul Park
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Jaewoong Lim
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | | | - Johanna Haimerl
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
- Chair of Inorganic and Metal-Organic Chemistry, Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, 85748, Garching, Germany
| | - Gina R Wilson
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Margaret K McBride
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Kelly L Forrester
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Esther R Adelson
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Virginia S Arnold
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Shehani T Wetthasinghe
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Vitaly A Rassolov
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Mark D Smith
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA
| | - Daniil Sosnin
- Department of Chemistry, Dartmouth College, Hanover, NH, 03755, USA
| | - Ivan Aprahamian
- Department of Chemistry, Dartmouth College, Hanover, NH, 03755, USA
| | - Manisha Karmakar
- Department of Chemistry, Jadavpur University, 700032, Kolkata, India
| | - Sayan Kumar Bag
- Department of Chemistry, Jadavpur University, 700032, Kolkata, India
| | - Arunabha Thakur
- Department of Chemistry, Jadavpur University, 700032, Kolkata, India
| | - Minjie Zhang
- Department of Chemistry, Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, and Guangdong-Hong Kong-Macau Joint Laboratory of Optoelectronic and Magnetic Functional Materials, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
| | - Ben Zhong Tang
- Department of Chemistry, Hong Kong Branch of Chinese National Engineering Research Center for Tissue Restoration and Reconstruction, and Guangdong-Hong Kong-Macau Joint Laboratory of Optoelectronic and Magnetic Functional Materials, The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon, Hong Kong, 999077, China
- School of Science and Engineering, Shenzhen Institute of Aggregate Science and Technology, The Chinese University of Hong Kong Shenzhen, Guangdong, 518172, China
- Center for Aggregation-Induced Emission, South China University of Technology, Guangzhou, 510640, China
- AIE Institute, Guangzhou Development District, Huangpu, Guangzhou, 510530, China
| | - Jorge A Castaño
- Departamento de Química, Universidad del Valle, AA 25360, Cali, Colombia
| | - Manuel N Chaur
- Departamento de Química, Universidad del Valle, AA 25360, Cali, Colombia
- Centro de Excelencia en Neuvos Materiales (CENM), Universidad del Valle, AA 25360, Cali, Colombia
| | - Michael M Lerch
- Stratingh Institute for Chemistry, University of Groningen, 9747 AG, Groningen, The Netherlands
| | - Roland A Fischer
- Chair of Inorganic and Metal-Organic Chemistry, Department of Chemistry, Technical University of Munich, Lichtenbergstrasse 4, 85748, Garching, Germany
| | - Joanna Aizenberg
- Department of Chemistry and Chemical Biology, Harvard University, Cambridge, MA, 02138, USA
- John A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, MA, 02138, USA
| | - Rainer Herges
- Otto Diels Institute of Organic Chemistry, University of Kiel, 24118, Kiel, Germany
| | - Jean-Marie Lehn
- Laboratoire de Chimie Supramoléculaire, Institut de Science et d'Ingénierie Supramoléculaires (ISIS), Université de Strasbourg, 67000, Strasbourg, France
| | - Natalia B Shustova
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina, 29208, USA.
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6
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Sangolkar AA, Kadiyam RK, Faizan M, Chedupaka O, Mucherla R, Pawar R. Electronic and photophysical properties of an atomically thin bowl-shaped beryllene encapsulated inside the cavity of [6]cycloparaphenylene (Be n@[6]CPP). Phys Chem Chem Phys 2023; 25:23262-23276. [PMID: 37608746 DOI: 10.1039/d3cp01952g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Exotic metallic nanostructures are being intensely pursued for a myriad of applications, with ultrathin membranes currently at the heart of several investigations. The objective of the present study was to systematically assess the atom-by-atom encapsulation of Be in the molecular nanoring of [6]cycloparaphenylene ([6]CPP). Further, the study aimed to scrutinize the structure, stability, and properties of the encapsulated Ben@[6]CPP systems. The outcomes clearly revealed that [6]CPP enabled the cooperative confinement of atomically thin bowl-shaped beryllene inside its circular cavity. The confinement of Be in [6]CPP generated topologically anisotropic surfaces with distinct interior and exterior charge distributions. The Ben@[6]CPP complexes could render a cationic or anionic nature to Be depending on its neighbouring environment. Thus, the systems may offer a promising opportunity for the synergistic co-adsorption of multiple reactants that are involved in multicomponent reactions. Energy decomposition analysis (EDA) elucidated that the bonding between Be and [6]CPP was partially ionic and covalent in character. The progressive encapsulation of Be atoms inside the cavity of [6]CPP led to a red-shift of the excitation wavelength to the visible region. The calculated optical absorption coefficient was higher than 104 L mol-1 cm-1, which shows promise for diverse optoelectronic applications.
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Affiliation(s)
- Akanksha Ashok Sangolkar
- Laboratory of Advanced Computation and Theory for Materials and Chemistry, Department of Chemistry, National Institute of Technology Warangal (NITW), Warangal, Telangana-506004, India.
| | - Rama Krishna Kadiyam
- Laboratory of Advanced Computation and Theory for Materials and Chemistry, Department of Chemistry, National Institute of Technology Warangal (NITW), Warangal, Telangana-506004, India.
| | - Mohmmad Faizan
- Laboratory of Advanced Computation and Theory for Materials and Chemistry, Department of Chemistry, National Institute of Technology Warangal (NITW), Warangal, Telangana-506004, India.
| | - Omshireesh Chedupaka
- Laboratory of Advanced Computation and Theory for Materials and Chemistry, Department of Chemistry, National Institute of Technology Warangal (NITW), Warangal, Telangana-506004, India.
| | - Raghasudha Mucherla
- Laboratory of Advanced Computation and Theory for Materials and Chemistry, Department of Chemistry, National Institute of Technology Warangal (NITW), Warangal, Telangana-506004, India.
| | - Ravinder Pawar
- Laboratory of Advanced Computation and Theory for Materials and Chemistry, Department of Chemistry, National Institute of Technology Warangal (NITW), Warangal, Telangana-506004, India.
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7
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Lingas R, Charistos ND, Muñoz-Castro A. Charge delocalization and aromaticity of doubly reduced double-walled carbon nanohoops. Phys Chem Chem Phys 2023. [PMID: 37448229 DOI: 10.1039/d3cp01994b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/15/2023]
Abstract
Cycloparaphenylenes (CPPs) exhibit selective host capabilities, featuring the ability to incorporate smaller CPPs to form double-walled host-guest complexes. Moreover, CPPs can also be stabilized by global aromaticity under twofold oxidation or reduction, involving electronic conjugation along with the overall structural backbone. Herein we explore the structural modifications, bonding, electron delocalization and magnetic properties of doubly reduced double-walled CPP complexes with DFT methods, in the isolated and aggregate [n + 5]CPP⊃[n]CPP2- (n = 5-8) species. Our results show that the hosts undergo structural, bonding and delocalization deformations towards quinoidal configurations and exhibit global long-ranged shielding cones similar to global aromatic free dianionic CPPs, accounting for charge delocalization on the outer nanohoops, whereas the guests preserve local aromatic benzenoid configurations, resulting in global and local aromatic circuits within the host-guest aggregate. This observation suggests that in multi-layered related species electronic delocalization will be retained at the outer structural surface. The aromaticity of the hosts is manifested in the strong upfield shifts of the guests 1H-NMR signals. Hence, CPP complexes can be extended to doubly reduced species stabilized by global host aromaticity expanding our understanding of doubled-walled nanotubes at the nanoscale regime.
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Affiliation(s)
- Rafael Lingas
- Department of Chemistry, Laboratory of Quantum and Computational Chemistry, Aristotle University of Thessaloniki, Thessaloniki, 54 124, Greece.
| | - Nickolas D Charistos
- Department of Chemistry, Laboratory of Quantum and Computational Chemistry, Aristotle University of Thessaloniki, Thessaloniki, 54 124, Greece.
| | - Alvaro Muñoz-Castro
- Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Bellavista 7, Santiago, 8420524, Chile.
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8
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Lingas R, Charistos ND, Muñoz-Castro A. Local and global aromaticity under rotation: analysis of two- and three-dimensional representative carbon nanostructures. Phys Chem Chem Phys 2023; 25:14285-14293. [PMID: 37183443 DOI: 10.1039/d3cp00569k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Nanoscaled 2D and 3D carbon structures with closed curved π-surfaces are of relevance in the development of desirable building units for materials science. Such species are able to sustain local and global aromatic circuits involving isolated regions or the overall structural backbone, respectively. Here we account for local and global aromaticity under rotation of representative two- and three-dimensional species involving para-connected and fused edge-sharing phenyl rings ([8]CPP, [10]CPP, CNB), and C60 fullerene at different charge states. Our results denote that nanoscaled 2D global aromatics mimic the behaviour of the most prototypical aromatic 6π-circuit, given by benzene, where the shielding cone properties vary along the rotation motion. In contrast, 3D spherical aromatics remain almost invariant under rotation, given the distinctive characteristics of such species, differing from 2D global aromatics. Dissection of orbital contributions reveals that π-orbitals are determinants for shifting from non-aromatic to spherical aromatic species. Under rotation, the variation of the anisotropic effect inherent to such nanoscaled structures is accounted for, which is relevant to rationalize variation in NMR signal shifts upon the formation of host-guest aggregates.
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Affiliation(s)
- Rafael Lingas
- Aristotle University of Thessaloniki, Department of Chemistry, Laboratory of Quantum and Computational Chemistry, Thessaloniki, 54 124, Greece.
| | - Nickolas D Charistos
- Aristotle University of Thessaloniki, Department of Chemistry, Laboratory of Quantum and Computational Chemistry, Thessaloniki, 54 124, Greece.
| | - Alvaro Muñoz-Castro
- Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Bellavista 7, Santiago, 8420524, Chile.
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9
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Pennachio M, Zhou Z, Wei Z, Tsybizova A, Gershoni-Poranne R, Petrukhina MA. Interplay of Charge and Aromaticity Upon Chemical Reduction of p-Quinquephenyl with Alkali Metals. Organometallics 2023. [DOI: 10.1021/acs.organomet.2c00583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Affiliation(s)
- Matthew Pennachio
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Zheng Zhou
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
- School of Materials Science and Engineering, Tongji University, 4800 Cao’an Road, Shanghai 201804, China
| | - Zheng Wei
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Alexandra Tsybizova
- Laboratory for Organic Chemistry, ETH Zurich, Vladimir-Prelog-Weg 2, Zurich 8092, Switzerland
| | - Renana Gershoni-Poranne
- Schulich Faculty of Chemistry, Technion − Israel Institute of Technology, Technion City, Haifa 32000, Israel
| | - Marina A. Petrukhina
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
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10
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Ahsan A, Buimaga-Iarinca L, Nijs T, Nowakowska S, Sk R, Mousavi SF, Heydari M, Stöhr M, Zaman SS, Morari C, Gade LH, Jung TA. Induced Fit and Mobility of Cycloalkanes within Nanometer-Sized Confinements at 5 K. J Phys Chem Lett 2022; 13:7504-7513. [PMID: 35943183 DOI: 10.1021/acs.jpclett.2c01592] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Host-guest architectures provide ideal systems for investigating site-specific physical and chemical effects. Condensation events in nanometer-sized confinements are particularly interesting for the investigation of intermolecular and molecule-surface interactions. They may be accompanied by conformational adjustments representing induced fit packing patterns. Here, we report that the symmetry of small clusters formed upon condensation, their registry with the substrate, their lateral packing, and their adsorption height are characteristically modified by the packing of cycloalkanes in confinements. While cyclopentane and cycloheptane display cooperativity upon filling of the hosting pores, cyclooctane and to a lesser degree cyclohexane diffusively redistribute to more favored adsorption sites. The dynamic behavior of cyclooctane is surprising at 5 K given the cycloalkane melting point of >0 °C. The site-specific modification of the interaction and behavior of adsorbates in confinements plays a crucial role in many applications of three-dimensional porous materials as gas storage agents or catalysts/biocatalysts.
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Affiliation(s)
- Aisha Ahsan
- Department of Physics, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - Luiza Buimaga-Iarinca
- CETATEA, National Institute for Research and Development of Isotopic and Molecular Technologies, 67-103 Donat, 400293 Cluj-Napoca, Romania
| | - Thomas Nijs
- Department of Physics, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - Sylwia Nowakowska
- Department of Physics, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - Rejaul Sk
- Department of Physics, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - S Fatemeh Mousavi
- Department of Physics, University of Basel, Klingelbergstrasse 82, 4056 Basel, Switzerland
| | - Mehdi Heydari
- Laboratory for X-ray Nanoscience and Technologies, Paul Scherrer Institut (PSI), 5232 Villigen, Switzerland
| | - Meike Stöhr
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Sameena S Zaman
- Integrated Sciences and Mathematics, Habib University, Block 18, Gulistan-e-Jauhar, University Avenue, Off Shahrah-e-Faisal Road, Karachi 75290, Sindh, Pakistan
| | - Cristian Morari
- CETATEA, National Institute for Research and Development of Isotopic and Molecular Technologies, 67-103 Donat, 400293 Cluj-Napoca, Romania
| | - Lutz H Gade
- Anorganisch-Chemisches Institut, Universität Heidelberg, Im Neuenheimer Feld 270, 69120 Heidelberg, Germany
| | - Thomas A Jung
- Laboratory for X-ray Nanoscience and Technologies, Paul Scherrer Institut (PSI), 5232 Villigen, Switzerland
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11
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Huang G, Zhou J, Chen J, Liu G. Identification of pyroptosis related subtypes and tumor microenvironment infiltration characteristics in breast cancer. Sci Rep 2022; 12:10640. [PMID: 35739182 PMCID: PMC9226023 DOI: 10.1038/s41598-022-14897-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2022] [Accepted: 05/13/2022] [Indexed: 12/24/2022] Open
Abstract
Understanding the association of pyroptosis with tumor progression, prognosis and effect on immunotherapeutic response in breast cancer (BC) is limited. This study analysed forty pyroptosis-related genes to construct the pyroptosis score. Association of the pyroptosis score with the overall survival, clinical features, tumor mutation load, immune cell infiltration, and treatment sensitivity of patients with BC was analysed. Out of 983 BC samples, 304 (30.93%) had genetic alterations with the highest TP53 frequency. We identified three separate subtypes associated with pyroptosis action. These subtypes correlate with the clinicopathological characteristics, TME immune cell infiltration, and disease prognosis. Based on the expression levels of the pyroptosis genes, we divided the pyroptosis score into a high group and a low group. The immune-activated pyroptosis subtype had a higher score with a better prognosis. We also observed that the pyroptosis score correlates with the tumor mutation burden. The pyroptosis score and disease prognosis were directly proportional. A higher pyroptosis score indicated a better prognosis. Results suggest that the pyroptosis-related gene prognosis model is closely related to the immune cell infiltration of BC. The three pyroptosis subtypes associated with BC assist in accurately identifying the tumor subtype, the prognosis of immunotherapy drugs and the patient’s therapeutic response.
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Affiliation(s)
- Guo Huang
- Hengyang Medical School, University of South China, Hengyang, 421001, Hunan, China.,Key Laboratory of Tumor Cellular and Molecular Pathology, College of Hunan Province, Cancer Research Institute, University of South China, Hengyang, 421001, Hunan, China
| | - Jun Zhou
- Hengyang Medical School, University of South China, Hengyang, 421001, Hunan, China.,Key Laboratory of Tumor Cellular and Molecular Pathology, College of Hunan Province, Cancer Research Institute, University of South China, Hengyang, 421001, Hunan, China
| | - Juan Chen
- The Second Affiliated Hospital, Department of Radiotherapy, Hengyang Medical School, University of South China, Hengyang, 421001, Hunan, China.
| | - Guowen Liu
- Department of Thyroid and Breast Surgery, The First Affiliated Hospital of Shenzhen University, Shenzhen Second People's Hospital, Shenzhen, 518035, Guangdong, China.
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12
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Zhou Z, Egger DT, Hu C, Pennachio M, Wei Z, Kawade RK, Üngör Ö, Gershoni-Poranne R, Petrukhina MA, Alabugin IV. Localized Antiaromaticity Hotspot Drives Reductive Dehydrogenative Cyclizations in Bis- and Mono-Helicenes. J Am Chem Soc 2022; 144:12321-12338. [PMID: 35652918 DOI: 10.1021/jacs.2c03681] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We describe reductive dehydrogenative cyclizations that form hepta-, nona-, and decacyclic anionic graphene subunits from mono- and bis-helicenes with an embedded five-membered ring. The reaction of bis-helicenes can either proceed to the full double annulation or be interrupted by addition of molecular oxygen at an intermediate stage. The regioselectivity of the interrupted cyclization cascade for bis-helicenes confirms that relief of antiaromaticity is a dominant force for these facile ring closures. Computational analysis reveals the unique role of the preexisting negatively charged cyclopentadienyl moiety in directing the second negative charge at a specific remote location and, thus, creating a localized antiaromatic region. This region is the hotspot that promotes the initial cyclization. Computational studies, including MO analysis, molecular electrostatic potential maps, and NICS(1.7)ZZ calculations, evaluate the interplay of the various effects including charge delocalization, helicene strain release, and antiaromaticity. The role of antiaromaticity relief is further supported by efficient reductive closure of the less strained monohelicenes where the relief of antiaromaticity promotes the cyclization even when the strain is substantially reduced. The latter finding significantly expands the scope of this reductive alternative to the Scholl ring closure.
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Affiliation(s)
- Zheng Zhou
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States.,School of Materials Science and Engineering, Tongji University, Shanghai 201804, China
| | - Dominic T Egger
- Laboratory for Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich 8903, Switzerland
| | - Chaowei Hu
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Matthew Pennachio
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Zheng Wei
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Rahul K Kawade
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Ökten Üngör
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
| | - Renana Gershoni-Poranne
- Laboratory for Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, Zurich 8903, Switzerland.,Schulich Faculty of Chemistry, Technion ─ Israel Institute of Technology, Technion City 32000, Israel
| | - Marina A Petrukhina
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Igor V Alabugin
- Department of Chemistry and Biochemistry, Florida State University, Tallahassee, Florida 32306, United States
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13
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Allen CD, Rempe SLB, Zwier TS, Ren P. Trapping Ca + inside a molecular cavity: computational study of the potential energy surfaces for Ca +-[ n]cycloparaphenylene, n = 5-12. Phys Chem Chem Phys 2022; 24:10085-10094. [PMID: 35416200 DOI: 10.1039/d2cp00717g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ion trap quantum computing utilizes electronic states of atomic ions such as Ca+ to encode information on to a qubit. To explore the fundamental properties of Ca+ inside molecular cavities, we describe here a computational study of Ca+ bound inside neutral [n]-cycloparaphenylenes (n = 5-12), often referred to as "nanohoops". This ab initio study characterizes optimized structures, harmonic vibrational frequencies, potential energy surfaces, and ion molecular orbital distortion as functions of increasing nanohoop size. The results of this work provide a first step in guiding experimental studies of the spectroscopy of these ion-molecular cavity complexes.
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Affiliation(s)
- Cole D Allen
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
| | - Susan L B Rempe
- Center for Integrated Nanotechnologies, Sandia National Laboratories, Albuquerque, New Mexico 87185, USA
| | - Timothy S Zwier
- Sandia National Laboratories, Gas Phase Chemical Physics, Livermore, CA 94550, USA
| | - Pengyu Ren
- Department of Biomedical Engineering, University of Texas at Austin, Austin, TX 78712, USA.
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14
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Macleod-Carey D, Muñoz-Castro A. Enabling dual aromaticity in fused nanobelts: evaluation of the magnetic behavior of fused [10]CPP units. Phys Chem Chem Phys 2022; 24:26701-26707. [DOI: 10.1039/d2cp03667c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Cyclo-para-phenylene (CPP) nanobelt structures with curved π-surfaces are of relevance in the development of desirable building units for materials science.
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Affiliation(s)
- Desmond Macleod-Carey
- Laboratorio de Química Inorgánica y Materiales Moleculares, Facultad de Ingeniería, Universidad Autonoma de Chile, El Llano Subercaseaux, Santiago 2801, Chile
| | - Alvaro Muñoz-Castro
- Facultad de Ingeniería, Arquitectura y Diseño, Universidad San Sebastián, Bellavista 7, Santiago, 8420524, Chile
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15
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Pennachio M, Zhou Z, Wei Z, Liu S, Rogachev AY, Petrukhina MA. Doubly-Reduced Pentacene in Different Coordination Environments: X-ray Crystallographic and Theoretical Insights into Structural and Electronic Changes. Chemistry 2021; 28:e202104194. [PMID: 34890088 DOI: 10.1002/chem.202104194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Indexed: 11/11/2022]
Abstract
Chemical reduction of pentacene (C22H14, 1) with Group 1 metals ranging from Li to Cs revealed that 1 readily undergoes a two-fold reduction to afford a doubly-reduced 12- anion in THF. With the help of 18-crown-6 ether used as a secondary coordinating agent, five π-complexes of 12- with different alkali metal counterions have been isolated and fully characterized. This series of complexes enables the first evaluation of alkali-metal ion binding patterns and structural changes of the 12- dianion based on the crystallographically confirmed examples. The difference in coordination of the smallest Li+ ion vs. heavier Group 1 congeners has been demonstrated. In addition, the use of benzo-15-crown-5 in the reaction of 1 with Na metal allowed the isolation of the unique solvent-separated ion product with a "naked" dianion, 12-. The detailed structural analyses of the series revealed the C-C bond alteration and core deformation of pentacene upon two-fold reduction and complexation. The negative charge localization at the central six-membered ring of 12- identified by theoretical calculations corroborates with the X-ray crystallographic results. Subsequent in-depth theoretical analysis provided a detailed description of changes in the electronic structure and aromaticity of pentacene upon reduction.
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Affiliation(s)
| | - Zheng Zhou
- University at Albany, Chemistry, UNITED STATES
| | - Zheng Wei
- University at Albany, Chemistry, UNITED STATES
| | - Shuyang Liu
- Illinois Institute of Technology, Chemistry, UNITED STATES
| | | | - Marina A Petrukhina
- University of Albany, Department of Chemistry, State University of New York, 1400 Washington Avenue, 12222, Albany, UNITED STATES
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16
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Yang Y, Huangfu S, Sato S, Juríček M. Cycloparaphenylene Double Nanohoop: Structure, Lamellar Packing, and Encapsulation of C 60 in the Solid State. Org Lett 2021; 23:7943-7948. [PMID: 34558903 PMCID: PMC8524662 DOI: 10.1021/acs.orglett.1c02950] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A new member of the cycloparaphenylene double-nanohoop family was synthesized. Its π-framework features two oval cavities that display different shapes depending on the crystallization conditions. Incorporation of the peropyrene bridge within the nanoring cycles via bay-regions alleviates steric effects and thus allows 1:1 complexation with C60 in the solid state. This nanocarbon adopts a lamellar packing motif, and our results suggest that the structural adjustment of this double nanohoop could enable its use in supramolecular and semiconductive materials.
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Affiliation(s)
- Yong Yang
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Shangxiong Huangfu
- Laboratory for High Performance Ceramics, Empa, Überlandstrasse 129, CH-8600 Dübendorf, Switzerland.,Department of Physics, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
| | - Sota Sato
- Department of Applied Chemistry, School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113-8656, Japan
| | - Michal Juríček
- Department of Chemistry, University of Zurich, Winterthurerstrasse 190, CH-8057 Zurich, Switzerland
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17
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Yang Y, Blacque O, Sato S, Juríček M. Cycloparaphenylene-Phenalenyl Radical and Its Dimeric Double Nanohoop*. Angew Chem Int Ed Engl 2021; 60:13529-13535. [PMID: 33635576 PMCID: PMC8252656 DOI: 10.1002/anie.202101792] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Indexed: 12/17/2022]
Abstract
The first example of a neutral spin-delocalized carbon-nanoring radical was achieved by integration of the open-shell phenalenyl unit into cycloparaphenylene (CPP). Spin distribution in this hydrocarbon is localized primarily on the phenalenyl segment and partially on the CPP segment as a consequence of steric and electronic effects. The resulting geometry is reminiscent of a diamond ring, with pseudo-perpendicular arrangement of the radial and the planar π-surface. The phenylene rings attached directly to the phenalenyl unit give rise to a steric effect that governs a highly selective dimerization pathway, yielding a giant double nanohoop. Its π-framework made of 158 sp2 -carbon atoms was elucidated by single-crystal X-ray diffraction, which revealed a three-segment CPP-peropyrene-CPP structure. This nanocarbon shows a fluorescence profile characteristic of peropyrene, regardless of which segment gets excited. These results in conjunction with DFT suggest that adjusting the size of the CPP segments in this double nanohoop could deliver donor-acceptor systems.
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Affiliation(s)
- Yong Yang
- Department of ChemistryUniversity of ZurichWinterthurerstrasse 1908057ZurichSwitzerland
| | - Olivier Blacque
- Department of ChemistryUniversity of ZurichWinterthurerstrasse 1908057ZurichSwitzerland
| | - Sota Sato
- Department of Applied ChemistryThe University of TokyoHongo, Bunkyo-kuTokyo113-8656Japan
| | - Michal Juríček
- Department of ChemistryUniversity of ZurichWinterthurerstrasse 1908057ZurichSwitzerland
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18
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Yang Y, Blacque O, Sato S, Juríček M. Cycloparaphenylene–Phenalenyl Radical and Its Dimeric Double Nanohoop**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202101792] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Yong Yang
- Department of Chemistry University of Zurich Winterthurerstrasse 190 8057 Zurich Switzerland
| | - Olivier Blacque
- Department of Chemistry University of Zurich Winterthurerstrasse 190 8057 Zurich Switzerland
| | - Sota Sato
- Department of Applied Chemistry The University of Tokyo Hongo, Bunkyo-ku Tokyo 113-8656 Japan
| | - Michal Juríček
- Department of Chemistry University of Zurich Winterthurerstrasse 190 8057 Zurich Switzerland
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19
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Ayub R, El Bakouri O, Smith JR, Jorner K, Ottosson H. Triplet State Baird Aromaticity in Macrocycles: Scope, Limitations, and Complications. J Phys Chem A 2021; 125:570-584. [PMID: 33427474 PMCID: PMC7884009 DOI: 10.1021/acs.jpca.0c08926] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Revised: 12/18/2020] [Indexed: 02/06/2023]
Abstract
The aromaticity of cyclic 4nπ-electron molecules in their first ππ* triplet state (T1), labeled Baird aromaticity, has gained growing attention in the past decade. Here we explore computationally the limitations of T1 state Baird aromaticity in macrocyclic compounds, [n]CM's, which are cyclic oligomers of four different monocycles (M = p-phenylene (PP), 2,5-linked furan (FU), 1,4-linked cyclohexa-1,3-diene (CHD), and 1,4-linked cyclopentadiene (CPD)). We strive for conclusions that are general for various DFT functionals, although for macrocycles with up to 20 π-electrons in their main conjugation paths we find that for their T1 states single-point energies at both canonical UCCSD(T) and approximative DLPNO-UCCSD(T) levels are lowest when based on UB3LYP over UM06-2X and UCAM-B3LYP geometries. This finding is in contrast to what has earlier been observed for the electronic ground state of expanded porphyrins. Yet, irrespective of functional, macrocycles with 2,5-linked furans ([n]CFU's) retain Baird aromaticity until larger n than those composed of the other three monocycles. Also, when based on geometric, electronic and energetic aspects of aromaticity, a 3[n]CFU with a specific n is more strongly Baird-aromatic than the analogous 3[n]CPP while the magnetic indices tell the opposite. To construct large T1 state Baird-aromatic [n]CM's, the design should be such that the T1 state Baird aromaticity of the macrocyclic perimeter dominates over a situation with local closed-shell Hückel aromaticity of one or a few monocycles and semilocalized triplet diradical character. Monomers with lower Hückel aromaticity in S0 than benzene (e.g., furan) that do not impose steric congestion are preferred. Structural confinement imposed by, e.g., methylene bridges is also an approach to larger Baird-aromatic macrocycles. Finally, by using the Zilberg-Haas description of T1 state aromaticity, we reveal the analogy to the Hückel aromaticity of the corresponding closed-shell dications yet observe stronger Hückel aromaticity in the macrocyclic dications than Baird aromaticity in the T1 states of the neutral macrocycles.
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Affiliation(s)
- Rabia Ayub
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, SE-751 20, Uppsala, Sweden
| | - Ouissam El Bakouri
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, SE-751 20, Uppsala, Sweden
| | - Joshua R. Smith
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, SE-751 20, Uppsala, Sweden
- Department
of Chemistry, Humboldt State University, One Harpst Street, Arcata, California 95521, United States
| | - Kjell Jorner
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, SE-751 20, Uppsala, Sweden
| | - Henrik Ottosson
- Department
of Chemistry - Ångström Laboratory, Uppsala University, Box 523, SE-751 20, Uppsala, Sweden
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20
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Zhu Y, Zhou Z, Wei Z, Petrukhina MA. Two-Fold Reduction of Dibenzo[a,e]cyclooctatetraene with Group 1 Metals: From Lithium to Cesium. Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00688] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Yikun Zhu
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Zheng Zhou
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Zheng Wei
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
| | - Marina A. Petrukhina
- Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
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