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Iorio A, Perin L, Gallo P. Structure and slow dynamics of protein hydration water with cryopreserving DMSO and trehalose upon cooling. J Chem Phys 2024; 160:244502. [PMID: 38912631 DOI: 10.1063/5.0205569] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2024] [Accepted: 06/05/2024] [Indexed: 06/25/2024] Open
Abstract
We study, through molecular dynamics simulations, three aqueous solutions with one lysozyme protein and three different concentrations of trehalose and dimethyl sulfoxide (DMSO). We analyze the structural and dynamical properties of the protein hydration water upon cooling. We find that trehalose plays a major role in modifying the structure of the network of HBs between water molecules in the hydration layer of the protein. The dynamics of hydration water presents, in addition to the α-relaxation, typical of glass formers, a slower long-time relaxation process, which greatly slows down the dynamics of water, particularly in the systems with trehalose, where it becomes dominant at low temperatures. In all the solutions, we observe, from the behavior of the α-relaxation times, a shift of the Mode Coupling Theory crossover temperature and the fragile-to-strong crossover temperature toward higher values with respect to bulk water. We also observe a strong-to-strong crossover from the temperature behavior of the long-relaxation times. In the aqueous solution with only DMSO, the transition shifts to a lower temperature than in the case with only lysozyme reported in the literature. We observe that the addition of trehalose to the mixture has the opposite effect of restoring the original location of the strong-to-strong crossover. In all the solutions analyzed in this work, the observed temperature of the protein dynamical transition is slightly shifted at lower temperatures than that of the strong-to-strong crossover, but their relative order is the same, showing a correlation between the motion of the protein and that of the hydration water.
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Affiliation(s)
- Antonio Iorio
- Dipartimento di Fisica, Università Roma Tre, Via della Vasca Navale 84, I-00146 Roma, Italy
| | - Leonardo Perin
- Dipartimento di Fisica, Università Roma Tre, Via della Vasca Navale 84, I-00146 Roma, Italy
| | - Paola Gallo
- Dipartimento di Fisica, Università Roma Tre, Via della Vasca Navale 84, I-00146 Roma, Italy
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2
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Gallo P, Bachler J, Bove LE, Böhmer R, Camisasca G, Coronas LE, Corti HR, de Almeida Ribeiro I, de Koning M, Franzese G, Fuentes-Landete V, Gainaru C, Loerting T, de Oca JMM, Poole PH, Rovere M, Sciortino F, Tonauer CM, Appignanesi GA. Advances in the study of supercooled water. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2021; 44:143. [PMID: 34825973 DOI: 10.1140/epje/s10189-021-00139-1] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Accepted: 10/17/2021] [Indexed: 06/13/2023]
Abstract
In this review, we report recent progress in the field of supercooled water. Due to its uniqueness, water presents numerous anomalies with respect to most simple liquids, showing polyamorphism both in the liquid and in the glassy state. We first describe the thermodynamic scenarios hypothesized for the supercooled region and in particular among them the liquid-liquid critical point scenario that has so far received more experimental evidence. We then review the most recent structural indicators, the two-state model picture of water, and the importance of cooperative effects related to the fact that water is a hydrogen-bonded network liquid. We show throughout the review that water's peculiar properties come into play also when water is in solution, confined, and close to biological molecules. Concerning dynamics, upon mild supercooling water behaves as a fragile glass former following the mode coupling theory, and it turns into a strong glass former upon further cooling. Connections between the slow dynamics and the thermodynamics are discussed. The translational relaxation times of density fluctuations show in fact the fragile-to-strong crossover connected to the thermodynamics arising from the existence of two liquids. When considering also rotations, additional crossovers come to play. Mobility-viscosity decoupling is also discussed in supercooled water and aqueous solutions. Finally, the polyamorphism of glassy water is considered through experimental and simulation results both in bulk and in salty aqueous solutions. Grains and grain boundaries are also discussed.
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Affiliation(s)
- Paola Gallo
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, Via della Vasca Navale 84, 00146, Roma, Italy.
| | - Johannes Bachler
- Institute of Physical Chemistry, University of Innsbruck, Innrain 52c, A-6020, Innsbruck, Austria
| | - Livia E Bove
- Dipartimento di Fisica, Sapienza Università di Roma, Piazzale A. Moro 5, 00185, Roma, Italy
- Sorbonne Université, CNRS UMR 7590, IMPMC, 75005, Paris, France
| | - Roland Böhmer
- Fakultät Physik, Technische Universität Dortmund, 44221, Dortmund, Germany
| | - Gaia Camisasca
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, Via della Vasca Navale 84, 00146, Roma, Italy
| | - Luis E Coronas
- Secció de Física Estadística i Interdisciplinària-Departament de Física de la Matèria Condensada, Universitat de Barcelona, & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, C. Martí i Franquès 1, 08028, Barcelona, Spain
| | - Horacio R Corti
- Departamento de Física de la Materia Condensada, Centro Atómico Constituyentes, Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
| | - Ingrid de Almeida Ribeiro
- Instituto de Física "Gleb Wataghin", Universidade Estadual de Campinas, UNICAMP, 13083-859, Campinas, São Paulo, Brazil
| | - Maurice de Koning
- Instituto de Física "Gleb Wataghin", Universidade Estadual de Campinas, UNICAMP, 13083-859, Campinas, São Paulo, Brazil
- Center for Computing in Engineering & Sciences, Universidade Estadual de Campinas, UNICAMP, 13083-861, Campinas, São Paulo, Brazil
| | - Giancarlo Franzese
- Secció de Física Estadística i Interdisciplinària-Departament de Física de la Matèria Condensada, Universitat de Barcelona, & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, C. Martí i Franquès 1, 08028, Barcelona, Spain
| | - Violeta Fuentes-Landete
- Institute of Physical Chemistry, University of Innsbruck, Innrain 52c, A-6020, Innsbruck, Austria
| | - Catalin Gainaru
- Fakultät Physik, Technische Universität Dortmund, 44221, Dortmund, Germany
| | - Thomas Loerting
- Institute of Physical Chemistry, University of Innsbruck, Innrain 52c, A-6020, Innsbruck, Austria
| | | | - Peter H Poole
- Department of Physics, St. Francis Xavier University, Antigonish, NS, B2G 2W5, Canada
| | - Mauro Rovere
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, Via della Vasca Navale 84, 00146, Roma, Italy
| | - Francesco Sciortino
- Dipartimento di Fisica, Sapienza Università di Roma, Piazzale A. Moro 5, 00185, Roma, Italy
| | - Christina M Tonauer
- Institute of Physical Chemistry, University of Innsbruck, Innrain 52c, A-6020, Innsbruck, Austria
| | - Gustavo A Appignanesi
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, Avenida Alem 1253, 8000, Bahía Blanca, Argentina
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Corti HR, Appignanesi GA, Barbosa MC, Bordin JR, Calero C, Camisasca G, Elola MD, Franzese G, Gallo P, Hassanali A, Huang K, Laria D, Menéndez CA, de Oca JMM, Longinotti MP, Rodriguez J, Rovere M, Scherlis D, Szleifer I. Structure and dynamics of nanoconfined water and aqueous solutions. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2021; 44:136. [PMID: 34779954 DOI: 10.1140/epje/s10189-021-00136-4] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Accepted: 10/06/2021] [Indexed: 06/13/2023]
Abstract
This review is devoted to discussing recent progress on the structure, thermodynamic, reactivity, and dynamics of water and aqueous systems confined within different types of nanopores, synthetic and biological. Currently, this is a branch of water science that has attracted enormous attention of researchers from different fields interested to extend the understanding of the anomalous properties of bulk water to the nanoscopic domain. From a fundamental perspective, the interactions of water and solutes with a confining surface dramatically modify the liquid's structure and, consequently, both its thermodynamical and dynamical behaviors, breaking the validity of the classical thermodynamic and phenomenological description of the transport properties of aqueous systems. Additionally, man-made nanopores and porous materials have emerged as promising solutions to challenging problems such as water purification, biosensing, nanofluidic logic and gating, and energy storage and conversion, while aquaporin, ion channels, and nuclear pore complex nanopores regulate many biological functions such as the conduction of water, the generation of action potentials, and the storage of genetic material. In this work, the more recent experimental and molecular simulations advances in this exciting and rapidly evolving field will be reported and critically discussed.
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Affiliation(s)
- Horacio R Corti
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina.
| | - Gustavo A Appignanesi
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - Marcia C Barbosa
- Institute of Physics, Federal University of Rio Grande do Sul, 91501-970, Porto Alegre, Brazil
| | - J Rafael Bordin
- Department of Physics, Institute of Physics and Mathematics, 96050-500, Pelotas, RS, Brazil
| | - Carles Calero
- Secció de Física Estadística i Interdisciplinària - Departament de Física de la Matèria Condensada, Universitat de Barcelona & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Gaia Camisasca
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - M Dolores Elola
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
| | - Giancarlo Franzese
- Secció de Física Estadística i Interdisciplinària - Departament de Física de la Matèria Condensada, Universitat de Barcelona & Institut de Nanociència i Nanotecnologia (IN2UB), Universitat de Barcelona, 08028, Barcelona, Spain
| | - Paola Gallo
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - Ali Hassanali
- Condensed Matter and Statistical Physics Section (CMSP), The International Center for Theoretical Physics (ICTP), Trieste, Italy
| | - Kai Huang
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong, China
| | - Daniel Laria
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Cintia A Menéndez
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - Joan M Montes de Oca
- INQUISUR, Departamento de Química, Universidad Nacional del Sur (UNS)-CONICET, 8000, Bahía Blanca, Argentina
| | - M Paula Longinotti
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Javier Rodriguez
- Departmento de Física de la Materia Condensada & Instituto de Nanociencia y Nanotecnología (CNEA-CONICET), Comisión Nacional de Energía Atómica, B1650LWP, Buenos Aires, Argentina
- Escuela de Ciencia y Tecnología, Universidad Nacional de General San Martín, San Martín, Buenos Aires, Argentina
| | - Mauro Rovere
- Dipartimento di Matematica e Fisica, Università degli Studi Roma Tre, 00146, Roma, Italy
| | - Damián Scherlis
- Instituto de Química Física de los Materiales, Medio Ambiente y Energía (INQUIMAE-CONICET), Universidad de Buenos Aires, Buenos Aires, Argentina
| | - Igal Szleifer
- Biomedical Engineering Department, Northwestern University, Evanston, USA
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Tinti A, Camisasca G, Giacomello A. Structure and dynamics of water confined in cylindrical nanopores with varying hydrophobicity. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2021; 379:20200403. [PMID: 34455842 PMCID: PMC8403978 DOI: 10.1098/rsta.2020.0403] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 05/18/2021] [Indexed: 06/11/2023]
Abstract
We report a detailed study of the main structural and dynamical features of water confined in model Lennard-Jones nanopores with tunable hydrophobicity and finite length ([Formula: see text] Å). The generic model of cylindrical confinement used is able to reproduce the wetting features of a large class of technologically and biologically relevant systems spanning from crystalline nanoporous materials, to mesoporous silica and ion channels. The aim of this work is to discuss the influence of parameters such as wall hydrophobicity, temperature, and pore size on the structural and dynamical features of confined water. Our simulation campaign confirmed the existence of a core domain in which water displays bulk-like structural features even in extreme ([Formula: see text] Å) confinement, while dynamical properties were shown to depend non-trivially on the size and hydrophobicity of the pores. This article is part of the theme issue 'Progress in mesoscale methods for fluid dynamics simulation'.
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Affiliation(s)
- Antonio Tinti
- Dipartimento di Ingegneria Meccanica e Aerospaziale, Sapienza Università di Roma, Rome, Italy
| | - Gaia Camisasca
- Dipartimento di Matematica e Fisica, Università Roma Tre, Rome, Italy
| | - Alberto Giacomello
- Dipartimento di Ingegneria Meccanica e Aerospaziale, Sapienza Università di Roma, Rome, Italy
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5
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Iorio A, Camisasca G, Rovere M, Gallo P. Characterization of hydration water in supercooled water-trehalose solutions: The role of the hydrogen bonds network. J Chem Phys 2019; 151:044507. [PMID: 31370561 DOI: 10.1063/1.5108579] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The structural and dynamical properties of hydration water in aqueous solutions of trehalose are studied with molecular dynamics simulation. We simulate the systems in the supercooled region to investigate how the interaction with the trehalose molecules modifies the hydrogen bond network, the structural relaxation, and the diffusion properties of hydration water. The analysis is performed by considering the radial distribution functions, the residence time of water molecules in the hydration shell, the two body excess entropy, and the hydrogen bond water-water and water-trehalose correlations of the hydration water. The study of the two body excess entropy shows the presence of a fragile to strong crossover in supercooled hydration water also found in the relaxation time of the water-water hydrogen bond correlation function, and this is in agreement with predictions of the mode coupling theory and of previous studies of the oxygen-oxygen density correlators [A. Iorio et al., J. Mol. Liq. 282, 617 (2019); Sci. China: Phys., Mech. Astron. 62, 107011 (2019)]. The water-trehalose hydrogen bond correlation function instead evidences a strong to strong crossover in the relaxation time, and this crossover is related to a trehalose dynamical transition. This signals the role that the strong interplay between the soluted molecules and the surrounding solvent has in determining the dynamical transition common to both components of the system that happens upon cooling and that is similar to the well known protein dynamical transition. We connect our results with the cryoprotecting role of trehalose molecules.
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Affiliation(s)
- A Iorio
- Dipartimento di Matematica e Fisica, Università Roma Tre, Via della Vasca Navale 84, 00146 Rome, Italy
| | - G Camisasca
- Department of Physics, AlbaNova University Center, Stockholm University, S-106 91 Stockholm, Sweden
| | - M Rovere
- Dipartimento di Matematica e Fisica, Università Roma Tre, Via della Vasca Navale 84, 00146 Rome, Italy
| | - P Gallo
- Dipartimento di Matematica e Fisica, Università Roma Tre, Via della Vasca Navale 84, 00146 Rome, Italy
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6
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7
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Liu L, Zhang R, Liu Y, Tan W, Zhu G. Insight into hydrogen bonds and characterization of interlayer spacing of hydrated graphene oxide. J Mol Model 2018; 24:137. [PMID: 29808444 DOI: 10.1007/s00894-018-3679-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Accepted: 05/15/2018] [Indexed: 02/03/2023]
Abstract
The number of hydrogen bonds and detailed information on the interlayer spacing of graphene oxide (GO) confined water molecules were calculated through experiments and molecular dynamics simulations. Experiments play a crucial role in the modeling strategy and verification of the simulation results. The binding of GO and water molecules is essentially controlled by hydrogen bond networks involving functional groups and water molecules confined in the GO layers. With the increase in the water content, the clusters of water molecules are more evident. The water molecules bounding to GO layers are transformed to a free state, making the removal of water molecules from the system difficult at low water contents. The diffuse behaviors of the water molecules are more evident at high water contents. With an increase in the water content, the functional groups are surrounded by fewer water molecules, and the distance between the functional groups and water molecules increases. As a result, the water molecules adsorbed into the GO interlamination will enlarge the interlayer spacing. The interlayer spacing is also affected by the number of GO layers. These results were confirmed by the calculations of number of hydrogen bonds, water state, mean square displacement, radial distribution function, and interlayer spacing of hydrated GO. Graphical Abstract This work research the interaction between GO functional groups and confined water molecules. The state of water molecules and interlayer spacing of graphene oxide were proved to be related to the number of hydrogen bonds.
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Affiliation(s)
- Liyan Liu
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, China
| | - Ruifeng Zhang
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, China
| | - Ying Liu
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, China
| | - Wei Tan
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, China
| | - Guorui Zhu
- School of Chemical Engineering and Technology, Tianjin University, Tianjin, 300350, China.
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8
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Chen L, Qi Y, Yu B, Qian L. Sliding Speed-Dependent Tribochemical Wear of Oxide-Free Silicon. NANOSCALE RESEARCH LETTERS 2017; 12:404. [PMID: 28610397 PMCID: PMC5468177 DOI: 10.1186/s11671-017-2176-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/01/2017] [Accepted: 05/31/2017] [Indexed: 06/07/2023]
Abstract
Fundamental understanding of tribochemical wear mechanism of oxide-free single crystalline silicon (without native oxide layer) is essential to optimize the process of ultra-precision surface manufacturing. Here, we report sliding speed-dependent nanowear of oxide-free silicon against SiO2 microspheres in air and in deionized water. When contact pressure is too low to induce Si yield, tribochemical wear occurs with the existence of water molecules and wear volume decreases logarithmically to constant as sliding speed increased. TEM and Raman observations indicate that the dynamics of rupture and reformation of interfacial bonding bridges result in the variation of tribochemical wear of the oxide-free Si with the increase of sliding speed.
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Affiliation(s)
- Lei Chen
- Tribology Research Institute, State Key Laboratory of Traction Power, Southwest Jiaotong University, Chengdu, 610031, Sichuan Province, People's Republic of China
| | - Yaqiong Qi
- Tribology Research Institute, State Key Laboratory of Traction Power, Southwest Jiaotong University, Chengdu, 610031, Sichuan Province, People's Republic of China
| | - Bingjun Yu
- Tribology Research Institute, State Key Laboratory of Traction Power, Southwest Jiaotong University, Chengdu, 610031, Sichuan Province, People's Republic of China
| | - Linmao Qian
- Tribology Research Institute, State Key Laboratory of Traction Power, Southwest Jiaotong University, Chengdu, 610031, Sichuan Province, People's Republic of China.
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9
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Gavazzoni C, Giovambattista N, Netz PA, Barbosa MC. Structure and mobility of water confined in AlPO 4-54 nanotubes. J Chem Phys 2017. [PMID: 28641422 DOI: 10.1063/1.4985626] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We performed molecular dynamics simulations of water confined within AlPO4-54 nanotubes. AlPO4-54 is an artificial material made of AlO4 and of PO4 in tetrahedra arranged in a periodic structure forming pores of approximately 1.3 nm in diameter. This makes AlPO4-54 an excellent candidate for practical applications, such as for water filtration and desalination. In this work, the structural and dynamical properties of the confined water are analyzed for various temperatures and water loadings. We find that the water structure is controlled by the heterogeneity of the nanopore surface with the water molecules located preferentially next to the surface of oxygens of AlPO4-54; consequently, at very low densities, water forms helicoidal structures in string-like arrangements.
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Affiliation(s)
- Cristina Gavazzoni
- Instituto de Física, Universidade Federal do Rio Grande do Sul, Caixa Postal 15051, CEP 91501-970 Porto Alegre, Rio Grande do Sul, Brazil
| | - Nicolas Giovambattista
- Brooklyn College, City University of New York, 365 Fifth Avenue, New York, New York 10016, USA
| | - Paulo A Netz
- Instituto de Química, Universidade Federal do Rio Grande do Sul, CEP 91501-970 Porto Alegre, Rio Grande do Sul, Brazil
| | - Marcia C Barbosa
- Instituto de Física, Universidade Federal do Rio Grande do Sul, Caixa Postal 15051, CEP 91501-970 Porto Alegre, Rio Grande do Sul, Brazil
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10
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Furlan AP, Fiore CE, Barbosa MC. Influence of disordered porous media on the anomalous properties of a simple water model. Phys Rev E 2015; 92:032404. [PMID: 26465479 DOI: 10.1103/physreve.92.032404] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2015] [Indexed: 11/06/2022]
Abstract
The thermodynamic, dynamic, and structural behavior of a water-like system confined in a matrix is analyzed for increasing confining geometries. The liquid is modeled by a two-dimensional associating lattice gas model that exhibits density and diffusion anomalies, similar to the anomalies present in liquid water. The matrix is a triangular lattice in which fixed obstacles impose restrictions to the occupation of the particles. We show that obstacles shorten all lines, including the phase coexistence, the critical and the anomalous lines. The inclusion of a very dense matrix not only suppresses the anomalies but also the liquid-liquid critical point.
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Affiliation(s)
- A P Furlan
- Instituto de Física, Univeridade Federal do Rio Grande do Sul, Caixa Postal 15051, 91501-570, Porto Alegre, RS, Brazil
| | - Carlos E Fiore
- Instituto de Física, Universidade de São Paulo, Caixa Postal 19044, 81531 São Paulo, SP, Brazil
| | - M C Barbosa
- Instituto de Física, Univeridade Federal do Rio Grande do Sul, Caixa Postal 15051, 91501-570, Porto Alegre, RS, Brazil
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11
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Suffritti GB, Demontis P, Gulín-González J, Masia M. Distributions of single-molecule properties as tools for the study of dynamical heterogeneities in nanoconfined water. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2014; 26:155103. [PMID: 24675399 DOI: 10.1088/0953-8984/26/15/155103] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
The explicit trend of the distribution functions of single-molecule rotational relaxation constants and atomic mean-square displacement are used to study the dynamical heterogeneities in nanoconfined water. The trend of the single-molecule properties distributions is related to the dynamic heterogeneities, and to the dynamic crossovers found in water clusters of different shapes and sizes and confined in a variety of zeolites. This was true in all the cases that were considered, in spite of the various shapes and sizes of the clusters. It is confirmed that the high temperature dynamical crossover occurring in the temperature range 200-230 K can be interpreted at a molecular level as the formation of almost translationally rigid clusters, characterized by some rotational freedom, hydrogen bond exchange and translational jumps as cage-to-cage processes. We also suggest a mechanism for the low temperature dynamical crossover (LTDC), falling in the temperature range 150-185 K, through which the adsorbed water clusters are made of nearly rigid sub-clusters, slightly mismatched, and thus permitting a relatively free librational motion at their borders. It appears that the condition required for LTDC to occur is the presence of highly heterogeneous environments for the adsorbed molecules, with some dangling hydrogen bonds or weaker than water-water hydrogen bonds. Under these conditions some dynamics are permitted at very low temperature, although most rotational motion is frozen. Therefore, it is unlikely, though not entirely excluded, that LTDC will be found in supercooled bulk water where no heterogeneous interface is present.
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Affiliation(s)
- G B Suffritti
- Dipartimento di Chimica e Farmacia, Università di Sassari and INSTM, Unità di ricerca di Sassari, Via Vienna 2, I-07100 Sassari, Italy
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12
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Jin J, Miller JD, Dang LX. Molecular dynamics simulation and analysis of interfacial water at selected sulfide mineral surfaces under anaerobic conditions. ACTA ACUST UNITED AC 2014. [DOI: 10.1016/j.minpro.2014.03.001] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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13
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Renou R, Szymczyk A, Ghoufi A. Water confinement in nanoporous silica materials. J Chem Phys 2014; 140:044704. [DOI: 10.1063/1.4862648] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
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14
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Renou R, Szymczyk A, Ghoufi A. Ultraconfinement of aqueous electrolytic solutions within hydrophilic nanotubes. RSC Adv 2014. [DOI: 10.1039/c4ra04604h] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023] Open
Abstract
By means of molecular simulations we shed light on the interplay of surface, confinement and salt effects on the structure and dynamics of water and ions highly confined within a hydrophilic silica nanotube.
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Affiliation(s)
- Richard Renou
- Institut des Sciences Chimiques de Rennes
- UMR 6226 CNRS
- Université de Rennes 1
- Université Européenne de Bretagne
- 35042 Rennes, France
| | - Anthony Szymczyk
- Institut des Sciences Chimiques de Rennes
- UMR 6226 CNRS
- Université de Rennes 1
- Université Européenne de Bretagne
- 35042 Rennes, France
| | - Aziz Ghoufi
- Institut de Physique de Rennes
- UMR CNRS 6251
- Université Rennes 1
- 35042 Rennes, France
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Siboulet B, Molina J, Coasne B, Turq P, Dufreche JF. Water self-diffusion at the surface of silica glasses: effect of hydrophilic to hydrophobic transition. Mol Phys 2013. [DOI: 10.1080/00268976.2013.861084] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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16
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Krott LB, Barbosa MC. Anomalies in a waterlike model confined between plates. J Chem Phys 2013; 138:084505. [DOI: 10.1063/1.4792639] [Citation(s) in RCA: 48] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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17
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Guo XY, Watermann T, Keane S, Allolio C, Sebastiani D. First Principles Calculations of NMR Chemical Shifts of Liquid Water at an Amorphous Silica Interface. ACTA ACUST UNITED AC 2012. [DOI: 10.1524/zpch.2012.0290] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
We investigate the anomalous structure and hydrogen bond network of water molecules confined inside a silica nanopore (MCM-41 type). In addition to geometric data, we use proton NMR chemical shifts as a measure for the strength of the H-bonding network. We compute the 1H NMR shifts of confined water based on a first principle approach in the framework of density functional perturbation theory under periodic boundary conditions. The hydrophilic character of the silica is well manifested in the water density profile. Our calculations illustrate both the modifications of the 1H NMR chemical shifts of the water with respect to bulk water and a considerable slowing down of water diffusion. In the vicinity of silanols, weakly hydrogen bonded liquid water is observed, while at the center region of the pore, the hydrogen bonding network is enhanced with respect to bulk water.
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Affiliation(s)
- Xiang Yang Guo
- Freie Universität Berlin, Physics Department, Berlin, Deutschland
| | - Tobias Watermann
- Freie Universität Berlin, Physics Department, Berlin, Deutschland
| | - Shane Keane
- Freie Universität Berlin, Physics Department, Berlin, Deutschland
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18
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The anisotropic characteristics of natural fibrous sepiolite as revealed by contact angle, surface free energy, AFM and molecular dynamics simulation. Colloids Surf A Physicochem Eng Asp 2012. [DOI: 10.1016/j.colsurfa.2012.04.018] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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19
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Sala J, Guàrdia E, Martí J. Specific ion effects in aqueous eletrolyte solutions confined within graphene sheets at the nanometric scale. Phys Chem Chem Phys 2012; 14:10799-808. [PMID: 22743694 DOI: 10.1039/c2cp40537g] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
The underlying mechanisms of specific ion effects on structure and dynamics of aqueous solutions have been long debated. On the other hand, the role of polarization at hydrophobic interfaces when aqueous electrolytes are present is of great importance, as it has been observed at the air-vapor interface. In this work, we have explored influence of ionic species on microscopical properties of aqueous sodium halide solutions constrained inside a double layer graphene channel, as a model for a realistic hydrophobic interface. Our systems have been simulated by molecular dynamics techniques, explicitly including polarization in water molecules and ions. Water and ionic density profiles showed the tendency of ionic species to occupy the whole space available, in good agreement with spectroscopic experimental data. The exception to this general behavior was fluoride, which preferred to stay away from interfaces. Two main regions were defined: interfaces and the central part of the slab, the bulklike region. Ionic hydration numbers at interfaces were lower than those at the bulklike area by about one to two units. We have also analyzed water-ion orientations and polarization distributions and obtained a marked dependence on ionic concentration. Residence time of anions suffered important fluctuations and tended to be largest at interfaces. Large variations of the static permittivity between interfacial and bulklike regions were observed. Ionic diffusion was found to be between 10(-5) and 10(-6) cm(2) s(-1) and showed to be mainly dependent on the concentration, whereas the type of anion considered and the polarizability had significantly less relevance. Conductivities were found to be dependent on ionic concentrations and the polarizabilities of anions, as well as on the spatial direction considered.
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Affiliation(s)
- J Sala
- Department of Physics and Nuclear Engineering, Technical University of Catalonia-Barcelona Tech, B4-B5 Northern Campus, 08034 Barcelona, Catalonia, Spain.
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20
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Giovambattista N, Rossky P, Debenedetti P. Computational Studies of Pressure, Temperature, and Surface Effects on the Structure and Thermodynamics of Confined Water. Annu Rev Phys Chem 2012; 63:179-200. [DOI: 10.1146/annurev-physchem-032811-112007] [Citation(s) in RCA: 106] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- N. Giovambattista
- Department of Physics, Brooklyn College of the City University of New York, Brooklyn, New York 11210;
| | - P.J. Rossky
- Institute for Computational Engineering and Sciences, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712;
| | - P.G. Debenedetti
- Department of Chemical and Biological Engineering, Princeton University, Princeton, New Jersey 08544-5263;
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21
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Pařez S, Předota M. Determination of the distance-dependent viscosity of mixtures in parallel slabs using non-equilibrium molecular dynamics. Phys Chem Chem Phys 2012; 14:3640-50. [DOI: 10.1039/c2cp22136e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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22
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Milischuk AA, Ladanyi BM. Structure and dynamics of water confined in silica nanopores. J Chem Phys 2011; 135:174709. [DOI: 10.1063/1.3657408] [Citation(s) in RCA: 148] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
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23
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Jelassi J, Grosz T, Bako I, Bellissent-Funel MC, Dore JC, Castricum HL, Sridi-Dorbez R. Structural studies of water in hydrophilic and hydrophobic mesoporous silicas: An x-ray and neutron diffraction study at 297 K. J Chem Phys 2011; 134:064509. [DOI: 10.1063/1.3530584] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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24
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Lerbret A, Lelong G, Mason PE, Saboungi ML, Brady JW. Molecular dynamics and neutron scattering study of glucose solutions confined in MCM-41. J Phys Chem B 2011; 115:910-8. [PMID: 21214282 PMCID: PMC3033472 DOI: 10.1021/jp1097519] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Glucose aqueous solutions confined in MCM-41 cylindrical pores of diameter 3.2 nm have been studied by molecular dynamics (MD) simulations and quasielastic neutron scattering (QENS). MD simulations reveal a strong preferential interaction of glucose molecules with the silica walls, which induces significant concentration gradients within the pore. The influence of glucose on the structural and dynamical properties of water strongly depends on the region of the pore considered. The distortion of the hydrogen bond network (HBN) and of the tetrahedral organization of interfacial water molecules induced by silica is much stronger than that induced by glucose molecules. The interfacial glucose molecules diffuse about 1 order of magnitude slower than those in the core region. Differences in affinities for silica of the different species in confined hydrogen-bonded mixtures induce significant structural and dynamical heterogeneities not present in bulk solutions.
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Affiliation(s)
- Adrien Lerbret
- Department of Food Science, Stocking Hall, Cornell University, Ithaca, NY 14853, USA
| | - Gérald Lelong
- Department of Food Science, Stocking Hall, Cornell University, Ithaca, NY 14853, USA
- Centre de Recherche sur la Matière Divisée, CNRS – Université d'Orléans, 1b, rue de la Férollerie, 45071 Orléans Cedex 2, France
- Institut de Minéralogie et Physique des Milieux Condensés, Université Paris 6 / CNRS-UMR 7590/Université Paris 7/IPGP/IRD, 140, Rue de Lourmel 75015 Paris, France
| | - Philip E. Mason
- Department of Food Science, Stocking Hall, Cornell University, Ithaca, NY 14853, USA
| | - Marie-Louise Saboungi
- Centre de Recherche sur la Matière Divisée, CNRS – Université d'Orléans, 1b, rue de la Férollerie, 45071 Orléans Cedex 2, France
| | - John W. Brady
- Department of Food Science, Stocking Hall, Cornell University, Ithaca, NY 14853, USA
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25
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Le Caër S, Pin S, Esnouf S, Raffy Q, Renault JP, Brubach JB, Creff G, Roy P. A trapped water network in nanoporous material: the role of interfaces. Phys Chem Chem Phys 2011; 13:17658-66. [DOI: 10.1039/c1cp21980d] [Citation(s) in RCA: 82] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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26
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Gallo P, Rovere M, Chen SH. Anomalous dynamics of water confined in MCM-41 at different hydrations. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:284102. [PMID: 21399274 DOI: 10.1088/0953-8984/22/28/284102] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
We present the results of molecular dynamics simulations on water confined in a silica pore of 15 Å modelled to mimic the MCM-41 structure. We focus on the dynamical properties of water for different hydration levels of the pore. Density profiles show a well-defined double-layer structure close to the surface. From the analysis of the layers we find that water molecules close to the substrate show an anomalous diffusion which is connected to the behaviour of the residence time distribution. The interaction with the substrate induces temporal disorder. As a consequence strong deviations are found from the Markovian processes that usually determine the long-time diffusion properties. The residence time distribution of the water molecules in the inner part of the pore, far from the hydrophilic surface, is compatible with a Markovian process.
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Affiliation(s)
- P Gallo
- Dipartimento di Fisica, Università Roma Tre, Via della Vasca Navale 84, I-00146 Roma, Italy.
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27
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Zhang Q, Chan KY, Quirke N. Molecular dynamics simulation of water confined in a nanopore of amorphous silica. MOLECULAR SIMULATION 2009. [DOI: 10.1080/08927020903116029] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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28
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Ockwig NW, Greathouse JA, Durkin JS, Cygan RT, Daemen LL, Nenoff TM. Nanoconfined Water in Magnesium-Rich 2:1 Phyllosilicates. J Am Chem Soc 2009; 131:8155-62. [DOI: 10.1021/ja900812m] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nathan W. Ockwig
- Geochemistry Department and Surface and Interface Sciences Department, Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87185 and Manuel Lujan, Jr. Neutron Scattering Center LANSCE-LC, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, New Mexico 87545
| | - Jeffery A. Greathouse
- Geochemistry Department and Surface and Interface Sciences Department, Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87185 and Manuel Lujan, Jr. Neutron Scattering Center LANSCE-LC, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, New Mexico 87545
| | - Justin S. Durkin
- Geochemistry Department and Surface and Interface Sciences Department, Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87185 and Manuel Lujan, Jr. Neutron Scattering Center LANSCE-LC, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, New Mexico 87545
| | - Randall T. Cygan
- Geochemistry Department and Surface and Interface Sciences Department, Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87185 and Manuel Lujan, Jr. Neutron Scattering Center LANSCE-LC, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, New Mexico 87545
| | - Luke L. Daemen
- Geochemistry Department and Surface and Interface Sciences Department, Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87185 and Manuel Lujan, Jr. Neutron Scattering Center LANSCE-LC, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, New Mexico 87545
| | - Tina M. Nenoff
- Geochemistry Department and Surface and Interface Sciences Department, Sandia National Laboratories, P.O. Box 5800, Albuquerque, New Mexico 87185 and Manuel Lujan, Jr. Neutron Scattering Center LANSCE-LC, Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, New Mexico 87545
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29
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Eslami H, Müller-Plathe F. Structure and Mobility of Nanoconfined Polyamide-6,6 Oligomers: Application of a Molecular Dynamics Technique with Constant Temperature, Surface Area, and Parallel Pressure. J Phys Chem B 2009; 113:5568-81. [DOI: 10.1021/jp8112655] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Hossein Eslami
- Eduard-Zintl Institut für Anorganische and Physikalische Chemie, Technische Universität Darmstadt, Petersenstraβe 20, D-64287, Germany, and Department of Chemistry, College of Sciences, Persian Gulf University, Boushehr 75168, Iran
| | - Florian Müller-Plathe
- Eduard-Zintl Institut für Anorganische and Physikalische Chemie, Technische Universität Darmstadt, Petersenstraβe 20, D-64287, Germany, and Department of Chemistry, College of Sciences, Persian Gulf University, Boushehr 75168, Iran
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30
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Cruz-Chu ER, Aksimentiev A, Schulten K. Ionic Current Rectification Through Silica Nanopores. THE JOURNAL OF PHYSICAL CHEMISTRY. C, NANOMATERIALS AND INTERFACES 2009; 113:1850. [PMID: 20126282 PMCID: PMC2658614 DOI: 10.1021/jp804724p] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Nanopores immersed in electrolytic solution and under the influence of an electric field can produce ionic current rectification, where ionic currents are higher for one voltage polarity than for the opposite polarity, resulting in an asymmetric current-voltage (I-V) curve. This behavior has been observed in polymer and silicon-based nanopores as well as in theoretically studied continuum models. By means of atomic level molecular dynamics (MD) simulations, we have performed a systematic investigation of KCl conductance in silica nanopores with a total simulation time of 680 ns. We found that ion-binding spots at the silica surfaces, such as dangling atoms, have effects on the ion concentration and electrostatic potential inside the nanopore, producing asymmetric I-V curves. Conversely, silica surfaces without ion-binding spots produce symmetric I-V curves.
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31
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Weng MH, Lee WJ, Ju SP, Chao CH, Hsieh NK, Chang JG, Chen HL. Adsorption of water molecules inside a Au nanotube: A molecular dynamics study. J Chem Phys 2008; 128:174705. [DOI: 10.1063/1.2907844] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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32
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Ockwig NW, Cygan RT, Criscenti LJ, Nenoff TM. Molecular dynamics studies of nanoconfined water in clinoptilolite and heulandite zeolites. Phys Chem Chem Phys 2008; 10:800-7. [DOI: 10.1039/b711949f] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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Characteristics of dextrin adsorption by elemental sulfur. J Colloid Interface Sci 2008; 317:18-25. [DOI: 10.1016/j.jcis.2007.09.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2007] [Revised: 08/30/2007] [Accepted: 09/04/2007] [Indexed: 11/24/2022]
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34
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Gallo P, Rovere M. Structural properties and liquid spinodal of water confined in a hydrophobic environment. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007; 76:061202. [PMID: 18233837 DOI: 10.1103/physreve.76.061202] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2007] [Indexed: 05/25/2023]
Abstract
We present the results of a computer simulation study of thermodynamical properties of TIP4P water confined in a hydrophobic disordered matrix of soft spheres upon supercooling. The hydrogen-bond network of water appears preserved in this hydrophobic confinement. Nonetheless a reduction in the average number of hydrogen bonds due to the geometrical constraints is observed. The liquid branch of the spinodal line is calculated from 350 K down to 210 K. The same thermodynamic scenario of the bulk is found: the spinodal curve is monotonically decreasing. The line of maximum density bends avoiding a crossing of the spinodal. There is, however, a shift both of the line of maximum density and of the spinodal toward higher pressures and lower temperatures with respect to bulk.
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Affiliation(s)
- P Gallo
- Dipartimento di Fisica, Università Roma Tre and Democritos National Simulation Center, Via della Vasca Navale 84, Rome, Italy.
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35
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Du H, Miller JD. Adsorption states of amphipatic solutes at the surface of naturally hydrophobic minerals: a molecular dynamics simulation study. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2007; 23:11587-11596. [PMID: 17929842 DOI: 10.1021/la701604u] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
An initial molecular dynamics simulation study regarding interfacial phenomena at selected naturally hydrophobic surfaces is reported. Simulation results show that, due to the natural hydrophobicity of graphite and talc basal planes, the cationic surfactant dodecyltrimethylammonium bromide preferentially adsorbs at these surfaces through hydrophobic interactions. When a model dextrin molecule is considered, the simulation results suggest that the hydrophobic interaction between the naturally hydrophobic surfaces of graphite, talc basal plane, and sulfur and the hydrophobic moieties (C-H and methylene groups) in the dextrin molecule plays a significant role in dextrin adsorption at these surfaces. The hydroxyl group in the dextrin molecule also contributes to its adsorption at the talc basal plane surface. In contrast, dextrin was not found to adsorb at talc edge surfaces.
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Affiliation(s)
- Hao Du
- Department of Metallurgical Engineering, University of Utah, Salt Lake City, Utah 84112, USA
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36
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Du H, Miller J. A molecular dynamics simulation study of water structure and adsorption states at talc surfaces. ACTA ACUST UNITED AC 2007. [DOI: 10.1016/j.minpro.2006.09.008] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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37
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Le Caër S, Palmer DJ, Lima M, Renault JP, Vigneron G, Righini R, Pommeret S. Time-Resolved Studies of Water Dynamics and Proton Transfer at the Alumina−Air Interface. J Am Chem Soc 2007; 129:11720-9. [PMID: 17725350 DOI: 10.1021/ja0691730] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The present study aims to understand the dynamical properties of water and OH groups layered on an alumina surface mainly by means of femtosecond IR-pump IR-probe transient absorption spectroscopy. The experimental results obtained demonstrate the existence of several kinds of O-H vibrators on the surface of alumina membranes, distinguishing them by their behavior on the femtosecond time scale and by the anisotropy of their spectral response. In the high-frequency region (>3400 cm-1), the absorption is due to well-packed aluminol groups and to physisorbed water patches on the surface. When pumping at 3200 cm-1, physisorbed water hydrogen-bonded to AlOH2+ groups is observed. The anisotropy measurements demonstrate the existence of an efficient energy-transfer mechanism among the water molecules characterized by a time constant of 400 +/- 100 fs. The persisting anisotropy at long times, especially in the case of AlOH groups and of the structured physisorbed water layer on top of them, proves the anisotropic structuring induced by the surface. The excitation at 3000 cm-1 enables the detection of a photon-induced proton-transfer reaction. The proton back-transfer reaction time constant is 350 +/- 50 fs. From anisotropy measurements, we estimate the proton hopping time to be 900 +/- 100 fs in a locally extended water network lying on the surface.
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Affiliation(s)
- Sophie Le Caër
- Laboratoire Claude Fréjacques, CEA/Saclay, DSM/DRECAM/SCM, URA 331 CNRS, F-91191 Gif-sur-Yvette Cedex, France.
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38
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Cruz-Chu ER, Aksimentiev A, Schulten K. Water-silica force field for simulating nanodevices. J Phys Chem B 2007; 110:21497-508. [PMID: 17064100 PMCID: PMC2517990 DOI: 10.1021/jp063896o] [Citation(s) in RCA: 162] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Amorphous silica is an inorganic material that is central for many nanotechnology applications, such as nanoelectronics, microfluidics, and nanopore sensors. To use molecular dynamics (MD) simulations to study the behavior of biomolecules interacting with silica, we developed a force field for amorphous silica surfaces based on their macroscopic wetting properties that is compatible with the CHARMM force field and TIP3P water model. The contact angle of a water droplet on a silica surface served as a criterion to tune the intermolecular interactions. The resulting force field was used to study the permeation of water through silica nanopores, illustrating the influence of the surface topography and the intermolecular parameters on permeation kinetics. We find that minute modeling of the amorphous surface is critical for MD studies, since the particular arrangement of surface atoms controls sensitively electrostatic interactions between silica and water.
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39
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Szoszkiewicz R, Riedo E. Nucleation time of nanoscale water bridges. PHYSICAL REVIEW LETTERS 2005; 95:135502. [PMID: 16197146 DOI: 10.1103/physrevlett.95.135502] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2005] [Indexed: 05/04/2023]
Abstract
Water capillaries bind together grains of sand. They also can bind an atomic force microscope tip to a substrate. The kinetics of capillary condensation at the nanoscale is studied here using friction force microscopy. At 40% relative humidity we find that the meniscus nucleation times increase from 0.7 to 4.2 ms when the temperature decreases from 332 to 299 K. The nucleation times grow exponentially with the inverse temperature 1/T obeying an Arrhenius law. We obtain a nucleation energy barrier of 7.8 x 10(-20) J and an attempt frequency ranging between 4 and 250 GHz, in excellent agreement with theoretical predictions. These results provide direct experimental evidence that capillary condensation is a thermally activated phenomenon.
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Affiliation(s)
- Robert Szoszkiewicz
- School of Physics, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
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40
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Rotureau P, Renault JP, Lebeau B, Patarin J, Mialocq JC. Radiolysis of Confined Water: Molecular Hydrogen Formation. Chemphyschem 2005; 6:1316-23. [PMID: 15968699 DOI: 10.1002/cphc.200500042] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The formation of molecular hydrogen in the radiolysis of water confined in nanoscale pores of well-characterised porous silica glasses and mesoporous molecular sieves (MCM-41) is examined. The comparison of dihydrogen formation by irradiation of both materials, dry and hydrated, shows that a large part of the H2 comes from the surface of the material. The radiolytic yields, G(H2)=(3+/-0.5)x10(-7) mol J(-1), calculated using the total energy deposited in the material and the water, are only slightly affected by the degree of hydration of the material and by the pore size. These yields are also not modified by the presence of hydroxyl radical scavengers. This observation proves that the back reaction between H2 and HO(.) is inoperative in such confined environments. Furthermore, the large amount of H2 produced in the presence of different concentrated scavengers of the hydrated electron and its precursor suggests that these two species are far from being the only species responsible for the H2 formation. Our results show that the radiolytic phenomena that occur in water confined in nanoporous silica are dramatically different to those in bulk water, suggesting the need to investigate further the chemical reactivity in this type of environment.
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Affiliation(s)
- P Rotureau
- CEA/Saclay, DSM/DRECAM/SCM/URA 331 CNRS, 91191 Gif-sur-Yvette Cedex, France
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41
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Ju SP, Chang JG, Lin JS, Lin YS. The effects of confinement on the behavior of water molecules between parallel Au plates of (001) planes. J Chem Phys 2005; 122:154707. [PMID: 15945656 DOI: 10.1063/1.1878552] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Molecular dynamics simulation is utilized to investigate the behavior of water molecules confined between two Au plates of (001) planes separated by gaps of 24.48, 16.32, 12.24, 11.22, and 10.20 A. The simulation results indicate that the arrangements of the water molecules are dependent on the gap size. For the largest gap size, adsorption of the Au surface creates two permanent water layers in the vicinity of each Au plate. Furthermore, in this case, the gap size is sufficiently large to permit the formation of a central region within which the water molecules are randomly oriented in a similar manner to bulk water molecules. The results indicate that the orientation of the first water layer directly absorbed by the plate surface does not change as the gap size between the two Au plates is reduced. However, the orientations of the O-H bonds in the second water layer parallel to the surface rearrange to form hydrogen bonds between the water layers as the separation between the plates is decreased. Finally, an inspection of the variation of the self-diffusion coefficients with the gap size suggests that the difference between the dynamic properties of the water molecules in the z direction and the x-y plane decreases as the distance between the two Au plates increases.
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Affiliation(s)
- Shin-Pon Ju
- Department of Mechanical and Electro-Mechanical Engineering; Center for Nanoscience & Nanotechnology, National Sun Yat-Sen University, Kaohsiung, Taiwan, Republic of China.
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42
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Crupi V, Majolino D, Migliardo P, Venuti V. Dynamical properties of liquids in restricted geometries. J Mol Liq 2005. [DOI: 10.1016/j.molliq.2004.08.017] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Foley S, Rotureau P, Pin S, Baldacchino G, Renault JP, Mialocq JC. Radiolysis of Confined Water: Production and Reactivity of Hydroxyl Radicals. Angew Chem Int Ed Engl 2005; 44:110-2. [PMID: 15599923 DOI: 10.1002/anie.200460284] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Sarah Foley
- CEA/Saclay, DSM/DRECAM/SCM/URA 331 CNRS, 91191 Gif-sur-Yvette, Cedex, France
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Foley S, Rotureau P, Pin S, Baldacchino G, Renault JP, Mialocq JC. Radiolysis of Confined Water: Production and Reactivity of Hydroxyl Radicals. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200460284] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Brovchenko I, Geiger A, Oleinikova A. Water in nanopores. I. Coexistence curves from Gibbs ensemble Monte Carlo simulations. J Chem Phys 2004; 120:1958-72. [PMID: 15268330 DOI: 10.1063/1.1631919] [Citation(s) in RCA: 106] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Coexistence curves of water in cylindrical and slitlike nanopores of different size and water-substrate interaction strength were simulated in the Gibbs ensemble. The two-phase coexistence regions cover a wide range of pore filling level and temperature, including ambient temperature. Five different kinds of two-phase coexistence are observed. A single liquid-vapor coexistence is observed in hydrophobic and moderately hydrophilic pores. Surface transitions split from the main liquid-vapor coexistence region, when the water-substrate interaction becomes comparable or stronger than the water-water pair interaction. In this case prewetting, one and two layering transitions were observed. The critical temperature of the first layering transition decreases with strengthening water-substrate interaction towards the critical temperature expected for two-dimensional systems and is not sensitive to the variation of pore size and shape. Liquid-vapor phase transition in a pore with a wall which is already covered with two water layers is most typical for hydrophilic pores. The critical temperature of this transition is very sensitive to the pore size, in contrast to the liquid-vapor critical temperature in hydrophobic pores. The observed rich phase behavior of water in pores evidences that the knowledge of coexistence curves is of crucial importance for the analysis of experimental results and a prerequiste of meaningful simulations.
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Affiliation(s)
- I Brovchenko
- Physikalische Chemie, Universitat Dortmund, D-44221 Dortmund, Germany
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Harpham MR, Ladanyi BM, Levinger NE, Herwig KW. Water motion in reverse micelles studied by quasielastic neutron scattering and molecular dynamics simulations. J Chem Phys 2004; 121:7855-68. [PMID: 15485248 DOI: 10.1063/1.1792592] [Citation(s) in RCA: 128] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Motion of water molecules in Aerosol OT [sodium bis(2-ethylhexyl) sulfosuccinate, AOT] reverse micelles with water content w(0) ranging from 1 to 5 has been explored both experimentally through quasielastic neutron scattering (QENS) and with molecular dynamics (MD) simulations. The experiments were performed at the energy resolution of 85 microeV over the momentum transfer (Q) range of 0.36-2.53 A(-1) on samples in which the nonpolar phase (isooctane) and the AOT alkyl chains were deuterated, thereby suppressing their contribution to the QENS signal. QENS results were analyzed via a jump-diffusion/isotropic rotation model, which fits the results reasonably well despite the fact that confinement effects are not explicitly taken into account. This analysis indicates that in reverse micelles with low-water content (w(0)=1 and 2.5) translational diffusion rate is too slow to be detected, while for w(0)=5 the diffusion coefficient is much smaller than for bulk water. Rotational diffusion coefficients obtained from this analysis increase with w(0) and are smaller than for bulk water, but rotational mobility is less drastically reduced than translational mobility. Using the Faeder/Ladanyi model [J. Phys. Chem. B 104, 1033 (2000)] of reverse micelle interior, MD simulations were performed to calculate the self-intermediate scattering function F(S)(Q,t) for water hydrogens. Comparison of the time Fourier transform of this F(S)(Q,t) with the QENS dynamic structure factor S(Q,omega), shows good agreement between the model and experiment. Separate intermediate scattering functions F(S) (R)(Q,t) and F(S) (CM)(Q,t) were determined for rotational and translational motion. Consistent with the decoupling approximation used in the analysis of QENS data, the product of F(S) (R)(Q,t) and F(S) (CM)(Q,t) is a good approximation to the total F(S)(Q,t). We find that the decay of F(S) (CM)(Q,t) is nonexponential and our analysis of the MD data indicates that this behavior is due to lower water mobility close to the interface and to confinement-induced restrictions on the range of translational displacements. Rotational relaxation also exhibits nonexponential decay. However, rotational mobility of O-H bond vectors in the interfacial region remains fairly high due to the lower density of water-water hydrogen bonds in the vicinity of the interface.
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Affiliation(s)
- Michael R Harpham
- Department of Chemistry, Colorado State University, Fort Collins, CO 80523-1872, USA
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Brovchenko I, Geiger A, Oleinikova A, Paschek D. Phase coexistence and dynamic properties of water in nanopores. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2003; 12:69-76. [PMID: 15007682 DOI: 10.1140/epje/i2003-10028-4] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
The dynamical properties of a confined fluid depend strongly on the (spatially varying) density. Its knowledge is therefore an important prerequisite for molecular-dynamics (MD) simulations and the analysis of experimental data. In a mixed Gibbs ensemble Monte Carlo (GEMC)/MD simulation approach we first apply the GEMC method to find possible phase states of water in hydrophilic and hydrophobic nanopores. The obtained phase diagrams evidence that a two-phase state is the most probable state of a fluid in incompletely filled pores in a wide range of temperature and level of pore filling. Pronounced variations of the average and local densities are observed. Subsequently, we apply constant-volume MD simulations to obtain water diffusion coefficients and to study their spatial variation along the pore radius. In general, water diffusivity slightly decreases in a hydrophilic pore and noticeably increases in a hydrophobic pore (up to about 40% with respect to the bulk value). In the range of gradual density variations the local diffusivity essentially follows the inverse density and the water binding energy. The diffusivity in the quasi-two-dimensional water layers near the hydrophilic wall decreases by 10 to 20% with respect to the bulk value. The average diffusivity of water in incompletely filled pore is discussed on the basis of the water diffusivities in the coexisting phases.
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Affiliation(s)
- I Brovchenko
- Physical Chemistry, University of Dortmund, Otto-Hahn-Str. 6, 44221, Dortmund, Germany.
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Rovere M, Gallo P. Effects of confinement on static and dynamical properties of water. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2003; 12:77-81. [PMID: 15007683 DOI: 10.1140/epje/i2003-10027-5] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Molecular-dynamics results on water confined in a silica pore are reviewed and discussed in connection with experiments performed on water in Vycor and with studies of water in contact with proteins. The properties of confined water are studied as a function of both temperature and hydration level. The interaction of water in the film close to the substrate with the silica atoms induces a strong distortion of the hydrogen bond network. At high hydration levels a double dynamical regime is observed. At low hydration an anomalous diffusion is found upon supercooling with a transition from a Brownian to a non-Brownian regime on approaching the substrate in agreement with results found in studies of water in contact with globular proteins.
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Affiliation(s)
- M Rovere
- Dipartimento di Fisica E. Amaldi, Universitá Roma Tre, INFM Unitá Roma Tre, Italy.
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