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Kang Y, Yang K, Fu J, Wang Z, Li X, Lu Z, Zhang J, Li H, Zhang J, Ma W. Selective Interfacial Excited-State Carrier Dynamics and Efficient Charge Separation in Borophene-Based Heterostructures. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2307591. [PMID: 37757801 DOI: 10.1002/adma.202307591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Revised: 09/12/2023] [Indexed: 09/29/2023]
Abstract
Borophene-based van der Waals heterostructures have demonstrated enormous potential in the realm of optoelectronic and photovoltaic devices, which has sparked a wide range of interest. However, a thorough understanding of the microscopic excited-state electronic dynamics at interfaces is lacking, which is essential for determining the macroscopic optoelectronic and photovoltaic performance of borophene-based devices. In this study, photoexcited carrier dynamics of β12 , χ3 , and α΄ borophene/MoS2 heterostructures are systematically studied based on time-domain nonadiabatic molecular dynamics simulations. Different Schottky contacts are found in borophene/semiconductor heterostructures. The interplay between Schottky barriers, electronic coupling, and the involvement of different phonon modes collectively contribute to the unique carrier dynamics in borophene-based heterostructures. The diverse borophene allotropes within the heterostructures exhibit distinct and selective carrier transfer behaviors on an ultrafast timescale: electrons tunnel into α΄ borophene with an ultrafast transfer rate (≈29 fs) in α΄/MoS2 heterostructures, whereas β12 borophene only allows holes to migrate with a lifetime of 176 fs. The feature enables efficient charge separation and offers promising avenues for applications in optoelectronic and photovoltaic devices. This study provides insight into the interfacial carrier dynamics in borophene-based heterostructures, which is helpful in further design of advanced 2D boron-based optoelectronic and photovoltaic devices.
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Affiliation(s)
- Yuchong Kang
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
| | - Kun Yang
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
| | - Jing Fu
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
| | - Zongguo Wang
- Computer Network Information Center, Chinese Academy of Science, Beijing, 100190, P. R. China
| | - Xuao Li
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
| | - Zhiqiang Lu
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
| | - Jia Zhang
- Max Born Institut für Nichtlineare Optik und Kurzzeitspektroskopie, 12489, Berlin, Germany
| | - Haibo Li
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
| | - Jin Zhang
- Max Planck Institute for the Structure and Dynamics of Matter and Center for Free-Electron Laser Science, Luruper Chaussee 149, 22761, Hamburg, Germany
| | - Wei Ma
- Ningxia Key Laboratory of Photovoltaic Materials, School of Materials and New Energy, Ningxia University, Yinchuan, 750021, P. R. China
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Han NT, Dien VK, Chang TR, Lin MF. Optical excitations of graphene-like materials: group III-nitrides. NANOSCALE ADVANCES 2023; 5:5077-5093. [PMID: 37705768 PMCID: PMC10496912 DOI: 10.1039/d3na00306j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2023] [Accepted: 08/04/2023] [Indexed: 09/15/2023]
Abstract
By using first-principles calculations, we have studied the electronic and optical characteristics of group III-nitrides, such as BN, AlN, GaN, and InN monolayers. The optimized geometry, quasi-particle energy spectra, charge density distributions, band-decomposed charge densities, and Van Hove singularities in density of states are described in the work using physical and chemical pictures and orbital hybridizations found in B-N, Al-N, Ga-N, and In-N chemical bonds. Moreover, the dielectric functions, energy loss functions, absorption coefficients, and reflectance spectra with electron-hole interactions of optical properties are successfully achieved. More importantly, the close relations between electronic and optical properties are successfully demonstrated. The theoretical framework will be useful to research other graphene-like materials.
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Affiliation(s)
- Nguyen Thi Han
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
| | - Vo Khuong Dien
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
| | - Tay-Rong Chang
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
- Center for Quantum Frontiers of Research and Technology (QFort) Tainan 70101 Taiwan
- Physics Division, National Center for Theoretical Sciences Taipei 10617 Taiwan
| | - Ming-Fa Lin
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
- Hierarchical Green-Energy Material (Hi-GEM) Research Center, National Cheng Kung University Taiwan
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3
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Han NT, Dien VK, Chang TR, Lin MF. Theoretical investigations of the electronic and optical properties of a GaGeTe monolayer. RSC Adv 2023; 13:19464-19476. [PMID: 37383693 PMCID: PMC10294289 DOI: 10.1039/d3ra03160h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Accepted: 06/08/2023] [Indexed: 06/30/2023] Open
Abstract
Our study focused on exploring the electronic and optical characteristics of the GaGeTe monolayer using first-principles calculations. Our findings showed that this material has remarkable physical and chemical properties attributed to its unique band structure, van Hove singularities in the density of states (DOS), charge density distributions, and charge density differences. We also observed excitonic effects, multiple optical excitation peaks, and strong plasmon modes in the energy loss functions, absorption coefficients, and reflectance spectra, which contribute to its enriched optical response. Moreover, we were able to establish a close relationship between the orbital hybridizations of the initial and final states with each optical excitation peak. Our results suggest that GaGeTe monolayers hold great potential for various semiconductor applications, especially those involving optics. Furthermore, the theoretical framework we used can be applied to study the electronic and optical properties of other graphene-like semiconductor materials.
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Affiliation(s)
- Nguyen Thi Han
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
| | - Vo Khuong Dien
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
| | - Tay-Rong Chang
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
- Center for Quantum Frontiers of Research and Technology (QFort) Tainan 70101 Taiwan
- Physics Division, National Center for Theoretical Sciences Taipei 10617 Taiwan
| | - Ming-Fa Lin
- Department of Physics, National Cheng Kung University 1 University Road Tainan 70101 Taiwan
- Hierarchical Green-Energy Material (Hi-GEM) Research Center, National Cheng Kung University Taiwan
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4
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Jeyakumar TC, Thomas JM, Sivan AK, Sivasankar C. Molecular and electronic structure analysis of [Fe(CO)4(SiX)] (X = O, S, Se and Te): a DFT study. J CHEM SCI 2023. [DOI: 10.1007/s12039-022-02126-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2023]
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5
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Adsorption Properties of NF3 and N2O on Al- and Ga-Doped Graphene Surface: A Density Functional Theory Study. ADSORPT SCI TECHNOL 2022. [DOI: 10.1155/2022/1019746] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
SF6/N2 gas mixture decomposition components can reflect the operation status inside GIS, and be used for fault diagnosis and monitoring inside GIS. NF3 and N2O are the characteristic decomposition components of SF6/N2 mixed gas. In order to find a potential gas sensitivity material for the detection of NF3 and N2O. This paper investigated the adsorption properties of NF3 and N2O on Al- and Ga- doped graphene monolayers based on density functional theory. Through the analysis of adsorption distance, charge transfer, adsorption energy, energy band structure, etc., the results indicated that the adsorption effect of Al- and Ga-doped graphene to NF3 and N2O are probably good, and these nanomaterials are potential to apply for the monitoring of GIS internal faults.
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Li Y, Jiang X, Wu P, Zhang L, Liu B, Li Y, Zhao X, Sun X, Xu M. Insight into the Stability and Properties of Zn‐Doped KH
2
PO
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Crystal by Hybrid Density Functional Theory. CRYSTAL RESEARCH AND TECHNOLOGY 2022. [DOI: 10.1002/crat.202200107] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yang Li
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
- Science and Technology on Plasma Physics Laboratory Research Center of Laser Fusion CAEP Mianyang 621900 P. R. China
| | - Xuanyu Jiang
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
| | - Pengcheng Wu
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
| | - Lisong Zhang
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
| | - Baoan Liu
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
| | - Yanlu Li
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
| | - Xian Zhao
- Center for Optics Research and Engineering of Shandong University Shandong University Qingdao 266237 P. R. China
| | - Xun Sun
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
| | - Mingxia Xu
- State Key Laboratory of Crystal Materials Shandong University Jinan 250100 P. R. China
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First-principles studies of defect behaviour in bismuth germanate. Sci Rep 2022; 12:15728. [PMID: 36130973 PMCID: PMC9492720 DOI: 10.1038/s41598-022-18586-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2022] [Accepted: 08/16/2022] [Indexed: 11/08/2022] Open
Abstract
Intrinsic defects are known to greatly affect the structural and electronic properties of scintillators thereby impacting performance when these materials are in operation. In order to overcome this effect, an understanding of the defect process is required for the design of more stable materials. Here we employed density functional theory calculations and the PBE0 hybrid functional to study the structural, electronic,defect process and optical properties of [Formula: see text] (BGO), a well know material used as scintillator. We examined possible intrinsic defects and calculated their formation energy and their impact on the properties that affect the scintillation process. Furthermore, we investigated the effect and role of rare earth element (REE = Nd, Pr, Ce and Tm) doping on the properties of the BGO system. While the PBE functional underestimated the band gap, the PBE0 was found to adequately describe the electronic properties of the system. Out of all the defects types considered, it was found that [Formula: see text] antisite is the most favourable defect. Analysis of the effect of this defect on the electronic properties of BGO revealed an opening of ingap states within the valence band. This observation suggests that the [Formula: see text] could be a charge trapping defect in BGO. We found that the calculated dopant substitution formation energy increases with increase in the size of the dopant and it turns out that the formation of O vacancy is easier in doped systems irrespective of the size of the dopant. We analyzed the optical spectra and noted variations in different regions of the photon energy spectra.
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Computational Development of Inhibitors of Plasmid-Borne Bacterial Dihydrofolate Reductase. Antibiotics (Basel) 2022; 11:antibiotics11060779. [PMID: 35740185 PMCID: PMC9220120 DOI: 10.3390/antibiotics11060779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/18/2022] [Revised: 06/01/2022] [Accepted: 06/06/2022] [Indexed: 12/03/2022] Open
Abstract
Resistance to trimethoprim and other antibiotics targeting dihydrofolate reductase may arise in bacteria harboring an atypical, plasmid-encoded, homotetrameric dihydrofolate reductase, called R67 DHFR. Although developing inhibitors to this enzyme may be expected to be promising drugs to fight trimethoprim-resistant strains, there is a paucity of reports describing the development of such molecules. In this manuscript, we describe the design of promising lead compounds to target R67 DHFR. Density-functional calculations were first used to identify the modifications of the pterin core that yielded derivatives likely to bind the enzyme and not susceptible to being acted upon by it. These unreactive molecules were then docked to the active site, and the stability of the docking poses of the best candidates was analyzed through triplicate molecular dynamics simulations, and compared to the binding stability of the enzyme–substrate complex. Molecule 32 ([6-(methoxymethyl)-4-oxo-3,7-dihydro-4H-pyrano[2,3-d]pyrimidin-2-yl]methyl-guanidinium) was shown by this methodology to afford extremely stable binding towards R67 DHFR and to prevent simultaneous binding to the substrate. Additional docking and molecular dynamics simulations further showed that this candidate also binds strongly to the canonical prokaryotic dihydrofolate reductase and to human DHFR, and is therefore likely to be useful to the development of chemotherapeutic agents and of dual-acting antibiotics that target the two types of bacterial dihydrofolate reductase.
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Tang TY, Zhao XH, Hu DY, Liang QQ, Wei XN, Tang YL. Theoretical exploration of mechanical, electronic structure and optical properties of aluminium based double halide perovskite. RSC Adv 2022; 12:10209-10218. [PMID: 35424974 PMCID: PMC8969480 DOI: 10.1039/d2ra01216b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2022] [Accepted: 03/22/2022] [Indexed: 11/30/2022] Open
Abstract
The mechanical, electronic structure and optical properties of aluminium based double halide perovskite were calculated by density functional theory. The formation energy and elastic constant confirm the stability of the cubic perovskite materials. The materials are all ductile and suitable for flexible photovoltaic and optoelectronic devices. The band gap values vary from 0.773 eV to 3.430 eV, exactly corresponding to the range of ideal band gap values for good photoresponse. The band structure analysis shows that all the materials possess small effective mass, which indicates a good transport of carriers. And these materials have a broad energy range of optical absorption for utilization and a detector of photons. Moreover, less expensive K2AgAlBr6 were investigated for comparison with materials containing a cesium element, and according to the results, is also a candidate for photoelectronic devices due to the similar properties. M2AgAlX6 (M = Cs, Rb and K, X = Cl, Br and I) is a stable vacancy ordered double halide perovskite direct band gap semiconductor material with good absorption of near-ultraviolet and short-wavelength visible light.![]()
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Affiliation(s)
- Tian-Yu Tang
- School of Physics, Guizhou University Guiyang 550025 China
| | - Xian-Hao Zhao
- School of Physics, Guizhou University Guiyang 550025 China
| | - De-Yuan Hu
- School of Physics, Guizhou University Guiyang 550025 China
| | - Qi-Qi Liang
- School of Physics, Guizhou University Guiyang 550025 China
| | - Xiao-Nan Wei
- School of Physics, Guizhou University Guiyang 550025 China
| | - Yan-Lin Tang
- School of Physics, Guizhou University Guiyang 550025 China
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10
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Dimakis N, Gupta S, Wadud R, Bhatti MI. Computational data of molybdenum disulfide/graphene bilayer heterojunction under strain. Data Brief 2022; 42:108054. [PMID: 35345841 PMCID: PMC8956926 DOI: 10.1016/j.dib.2022.108054] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 03/08/2022] [Accepted: 03/09/2022] [Indexed: 11/25/2022] Open
Abstract
The data presented in this paper refer to the research article "Dry and Hydrated Defective Molybdenum Disulfide/Graphene Bilayer Heterojunction Under Strain for Hydrogen Evolution from Water Splitting: A First-principle Study". Here, we present the Density Functional Theory (DFT) data used to generate optimal geometries and electronic structure for the MoS2/graphene heterostructure under strain, for dry and hydrated pristine and defect configurations. We also report DFT data used to obtain hydrogen Gibbs free energies for adsorption on the MoS2 monolayer and on graphene of the heterostructure. The DFT data were calculated using the periodic DFT code CRYSTAL17, which employs Gaussian basis functions, under the hybrid functionals PBE0 and HSE06. Moreover, we also report the data used for Quantum Theory of Atoms in Molecules (QTAIM) and Non-covalent Interaction (NCI) analysis calculations. These data were obtained using the optimized unit cell configurations from the periodic DFT and inputted to Gamess program, thus generating files that could be read by the Multiwfn program used for QTAIM and NCI calculations.
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Affiliation(s)
- Nicholas Dimakis
- Department of Physics and Astronomy, University of Texas Rio Grande Valley, Edinburg 78539, USA
| | - Sanju Gupta
- Department of Materials Science and Engineering, Pennsylvania State University, University Park 16802, USA
| | - Razeen Wadud
- Department of Physics and Astronomy, University of Texas Rio Grande Valley, Edinburg 78539, USA
| | - Muhammad I Bhatti
- Department of Physics and Astronomy, University of Texas Rio Grande Valley, Edinburg 78539, USA
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Heteroctanuclear Au 4Ag 4 Cluster Complexes of 4,5-Diethynylacridin-9-One with Luminescent Mechanochromism. MOLECULES (BASEL, SWITZERLAND) 2022; 27:molecules27072127. [PMID: 35408524 PMCID: PMC9000280 DOI: 10.3390/molecules27072127] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 03/18/2022] [Accepted: 03/23/2022] [Indexed: 11/16/2022]
Abstract
Two heteroctanuclear Au4Ag4 cluster complexes of 4,5-diethynylacridin-9-one (H2L) were prepared through the self-assembly reactions of [Au(tht)2](CF3SO3), Ag(tht)(CF3SO3), H2L and PPh3 or PPh2Py (2-(diphenylphosphino)pyridine). The Au4Ag4 cluster consists of a [Au4L4]4- and four [Ag(PPh3)]+ or [Ag(PPh2Py)]+ units with Au4L4 framework exhibiting a twisted paper clip structure. In CH2Cl2 solutions at ambient temperature, both compounds show ligand fluorescence at ca. 463 nm as well as phosphorescence at 650 nm for 1 and 630 nm for 2 resulting from admixture of 3IL (intraligand) of L ligand, 3LMCT (from L ligand to Au4Ag4) and 3MC (metal-cluster) triplet states. Crystals or crystalline powders manifest bright yellow-green phosphorescence with vibronic-structured emission bands at 530 (568sh) nm for complex 1 and 536 (576sh) nm for complex 2. Upon mechanical grinding, yellow-green emission in the crystalline state is dramatically converted to red luminescence centered at ca. 610 nm with a drastic redshift of the emission after crystal packing is destroyed.
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12
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Paularokiadoss F, Christopher Jeyakumar T, Thomas R, Sekar A, Bhakiaraj D. Group 13 monohalides [AX (A = B, Al, Ga and In; X = Halogens)] as alternative ligands for carbonyl in organometallics: Electronic structure and bonding analysis. COMPUT THEOR CHEM 2022. [DOI: 10.1016/j.comptc.2021.113587] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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13
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Corrosion Protection Oxide Scale Formed on Surface of Fe-Ni-M (M = Al, Cr, Cu) Inert Anode for Molten Salt Electrolysis. MATERIALS 2022; 15:ma15030719. [PMID: 35160662 PMCID: PMC8836764 DOI: 10.3390/ma15030719] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/03/2021] [Revised: 01/11/2022] [Accepted: 01/17/2022] [Indexed: 12/04/2022]
Abstract
An oxide scale formed on the surface of metal anodes is crucial for determining the overall quality of molten salt electrolysis (MSE), particularly for the durability of the anode materials. However, the material properties of oxide scales are yet to be revealed, particularly in ternary spinel oxide phases. Therefore, we investigate the mechanical and thermal properties of spinel oxides via first-principles calculations. The oxides are calculated using the models of normal (cubic) and inverse (orthorhombic) spinel compounds. The d-orbital exchange correlation potential of transition metal oxides is addressed using the generalized gradient approximation plus Hubbard U. The lattice constant, formation energy, cohesive energy, elastic modulus, Poisson's ratio, universal anisotropy index, hardness, minimal thermal conductivity, and thermal expansion coefficient are calculated. Based on the calculated mechanical and thermal properties of the spinel compound, the Fe-Ni-Al inert anode is expected to be the most suitable oxide scale for MSE applications among the materials investigated in our study.
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14
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Theoretical study of SF6 decomposition products adsorption on metal oxide cluster-modified single-layer graphene. J IND ENG CHEM 2022. [DOI: 10.1016/j.jiec.2021.09.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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15
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Shi Z, Xia SY. First-Principle Study of Rh-Doped Nitrogen Vacancy Boron Nitride Monolayer for Scavenging and Detecting SF 6 Decomposition Products. Polymers (Basel) 2021; 13:3507. [PMID: 34685266 PMCID: PMC8541247 DOI: 10.3390/polym13203507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Revised: 09/04/2021] [Accepted: 09/06/2021] [Indexed: 11/16/2022] Open
Abstract
The scavenging and detection of sulfur hexafluoride (SF6) decomposition products (SO2, H2S, SO2F2, SOF2) critically matters to the stable and safe operation of gas-insulated switchgear (GIS) equipment. In this paper, the Rh-doped nitrogen vacancy boron nitride monolayer (Rh-VNBN) is proposed as a gas scavenger and sensor for the above products. The computational processes are applied to investigate the configurations, adsorption and sensing processes, and electronic properties in the gas/Rh-VNBN systems based on the first-principle calculations. The binding energy (Eb) of the Rh-VNBN reaches -8.437 eV, while the adsorption energy (Ead) and band gap (BG) indicate that Rh-VNBN exhibits outstanding adsorption and sensing capabilities. The density of state (DOS) analysis further explains the mechanisms of adsorption and sensing, demonstrating the potential use of Rh-VNBN in sensors and scavengers of SF6 decomposition products. This study is meaningful as it explores new gas scavengers and sensors of SF6 decomposition products to allow the operational status assessment of GIS equipment.
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Affiliation(s)
- Zhen Shi
- School of Electrical Engineering, Guangxi University, Nanning 530004, China
| | - Sheng-Yuan Xia
- State Key Laboratory of Power Transmission Equipment & System Security and New Technology, Chongqing University, Chongqing 400044, China;
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16
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Li JY, Wang P, Akram S. Adsorption and sensing for SF 6 decomposed gases by Pt-BN monolayer: a DFT study. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1950856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- Jia-Yu Li
- College of Electrical Engineering and Information Technology, Sichuan University, Chengdu, People’s Republic of China
| | - Peng Wang
- College of Electrical Engineering and Information Technology, Sichuan University, Chengdu, People’s Republic of China
| | - Shakeel Akram
- College of Electrical Engineering and Information Technology, Sichuan University, Chengdu, People’s Republic of China
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17
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Sekar A, Paularokiadoss F, Immanuel S, Christopher Jeyakumar T. Chemistry of group-10 metals monohaloalumylene complexes [TM(CO)3AlX]: a DFT study. Theor Chem Acc 2021. [DOI: 10.1007/s00214-021-02801-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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18
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Habiba M, Abdelilah B, Abdallah EK, Abdelhafed T, Ennaoui A, Khadija EM, Omar M. Enhanced photocatalytic activity of phosphorene under different pH values using density functional theory (DFT). RSC Adv 2021; 11:16004-16014. [PMID: 35481157 PMCID: PMC9030538 DOI: 10.1039/d0ra10246f] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2020] [Accepted: 04/08/2021] [Indexed: 11/23/2022] Open
Abstract
Phosphorene, a new two-dimensional material, was investigated theoretically as a promising photocatalyst material. The structural and electronic properties of phosphorene were studied using hybrid functional based HSE approximation. The effect of the adsorbed molecules on the phosphorene surface was studied for various chemical elements, such as water molecule (H2O), hydronium ion (H3O+), hydrogen atom and ion (H/H+), hydroxide molecule (OH), and hydroxide ion (OH−). The potential application of phosphorene as a photocatalyst in vacuum was proved under different pH values. A pH of 8 was found to be the suitable value for clean phosphorene in which the flat band position was corrected for the oxidizing and reducing potentials of phosphorene, but the presence of OH− ions in a basic solution damaged the surface structure and limited the use of phosphorene in photocatalysis caused by the high content (0.25 ML and 0.5 ML) of the adsorbed OH− on the phosphorene surface. The obtained results matched the required parameters of a photocatalyst for water splitting using clean phosphorene surface in neutral solution (pH = 7). Phosphorene, a new two-dimensional material, was investigated theoretically as a promising photocatalyst material.![]()
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Affiliation(s)
- Mamori Habiba
- Laboratory of Condensed Matter and Sciences Interdisciplinary (LaMCScI), Faculty of Science, Mohammed V University in Rabat BP 1014 RP Rabat Morocco .,Materials and Nanomaterials Center, Moroccan Foundation for Advanced Science, Innovation and Research, MAScIR Rabat Morocco.,PSL Research University, Chimie ParisTech - CNRS, Institut de Recherche de Chimie Paris 75005 Paris France
| | - Benyoussef Abdelilah
- Laboratory of Condensed Matter and Sciences Interdisciplinary (LaMCScI), Faculty of Science, Mohammed V University in Rabat BP 1014 RP Rabat Morocco .,Hassan II Academy of Sciences and Techniques Rabat Morocco
| | - El Kenz Abdallah
- Laboratory of Condensed Matter and Sciences Interdisciplinary (LaMCScI), Faculty of Science, Mohammed V University in Rabat BP 1014 RP Rabat Morocco
| | - Taleb Abdelhafed
- PSL Research University, Chimie ParisTech - CNRS, Institut de Recherche de Chimie Paris 75005 Paris France.,Sorbonne University 4 Place Jussieu 75231 Paris France
| | - Ahmed Ennaoui
- Scientific Council of IRESEN, the Moroccan Solar Energy Research Institute Ben Guerir Morocco
| | - El Maalam Khadija
- Materials and Nanomaterials Center, Moroccan Foundation for Advanced Science, Innovation and Research, MAScIR Rabat Morocco
| | - Mounkachi Omar
- Laboratory of Condensed Matter and Sciences Interdisciplinary (LaMCScI), Faculty of Science, Mohammed V University in Rabat BP 1014 RP Rabat Morocco .,MSDA, Mohammed VI Polytechnic University Lot 660, Hay Moulay Rachid Ben Guerir 43150 Morocco
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Paularokiadoss F, Antony Sandosh T, Sekar A, Christopher Jeyakumar T. Theoretical studies of group 10 metal gallylene complexes [TM(CO)3(GaX)]. COMPUT THEOR CHEM 2021. [DOI: 10.1016/j.comptc.2020.113139] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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20
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Huang Q, Li H, Ma W. Enabling Enhanced Lithium Ion Storage Performance of Graphdiyne by Doping with Group-15 Elements: A First-Principles Study. ACS OMEGA 2021; 6:1456-1464. [PMID: 33490805 PMCID: PMC7818639 DOI: 10.1021/acsomega.0c05135] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 12/25/2020] [Indexed: 06/12/2023]
Abstract
As a typical two-dimensional material possessing sp and sp2 hybrid orbitals, graphdiyne (GDY) and its derivatives have been proposed as an attractive candidate for high-performance lithium ion batteries (LIBs). In this work, an advanced GDY LIB electrode is designed by doping with group-15 elements. With the aid of first-principles simulations, the geometric properties, electronic structures, theoretical storage capacities, open-circuit voltages, and diffusion path of Li atoms on doped GDY are comprehensively investigated. Specifically, 14 different adsorption sites are proposed, most of which are situated out of plane of the carbon network, resulting from the out of plane Pz orbitals of conduction band minimum and valence band maximum. Among the five doped GDY, phosphorus-doped graphdiyne (P-GDY) exhibits prominent lithium ion storage behavior, i.e., the maximum theoretical capacity is 1949 mA·h·g-1, which is ∼2.6 times higher than that of GDY. Moreover, calculation results in terms of the in-plane migration of lithium ion on P-GDY indicate that Li atoms prefer to diffuse across the carbon network (with a moderate barrier of 0.46 eV) rather than directly through the middle of the hexagonal aperture (with a higher barrier of 1.78 eV). Thus, this approach provides novel insights into the Li ion storage properties of group-15 element-doped GDY from the prospect of theoretical calculations, which would be useful to guide the future design of high-capacity GDY anodes for LIBs.
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Affiliation(s)
- Qiuzhi Huang
- Ningxia Key Laboratory of Photovoltaic Materials, Ningxia University, Yinchuan, Ningxia 750021, P. R. China
| | - Haibo Li
- Ningxia Key Laboratory of Photovoltaic Materials, Ningxia University, Yinchuan, Ningxia 750021, P. R. China
| | - Wei Ma
- Ningxia Key Laboratory of Photovoltaic Materials, Ningxia University, Yinchuan, Ningxia 750021, P. R. China
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21
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Coordination of indium monohalide with group-10 metal carbonyls [TM(CO)3(InX)]: a DFT study. CHEMICAL PAPERS 2021. [DOI: 10.1007/s11696-020-01297-w] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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22
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Paularokiadoss F, Sekar A, Christopher Jeyakumar T. A DFT study on structural and bonding analysis of transition-metal carbonyls with terminal haloborylene ligands [M(CO)3(BX)] (M = Ni, Pd, and Pt; X = F, Cl, Br, and I). COMPUT THEOR CHEM 2020. [DOI: 10.1016/j.comptc.2020.112750] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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23
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Jin P, Shi X, Cui X, Jiang Y, Jing Q, Lee MH, Long M, Cao H, Ding H. Tellurium-oxygen group enhanced birefringence in tellurium phosphates: a first-principles investigation. RSC Adv 2020; 10:4087-4094. [PMID: 35492682 PMCID: PMC9049004 DOI: 10.1039/c9ra10653g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2019] [Accepted: 01/08/2020] [Indexed: 11/21/2022] Open
Abstract
Phosphates possess a relatively large UV/DUV cutoff edge, but these compounds usually have very small birefringence. Recently the Te2P2O9 crystal was synthesized and its birefringence was reported to be as large as 0.106 at 1013.98 nm. Herein, we investigated the electronic structure and optical properties of Te2P2O9 using the first-principles method. The obtained results are in good agreement with the experimental values. The Born effective charges and SHG density of Te2P2O9 show that the contribution to the birefringence and SHG response mainly originates from the TeO5 group. The electronic structures and optical response of Ba2TeO(PO4)2 and Te3O3(PO4)2 were also investigated for comparison. The results show that these two tellurium phosphates also possess a large birefringence similar to Te2P2O9. Also, the birefringence originates from the TeO x polyhedrons, which was confirmed by the real-space atom-cutting results and distortion indices.
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Affiliation(s)
- Pengyun Jin
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China
| | - Xuerui Shi
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China
| | - Xiuhua Cui
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China
| | - Yi Jiang
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China
| | - Qun Jing
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China
| | - Ming-Hsien Lee
- Department of Physics, Tamkang University New Taipei City 25137 Taiwan
| | - Mengqiu Long
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China .,Hunan Key Laboratory of Super Micro-structure and Ultrafast Process, Central South University Changsha 410083 China
| | - Haibin Cao
- Department of Physics, College of Sciences, Shihezi University Shihezi 832000 China
| | - Hanqin Ding
- Institute of Low-dimensional Quantum Materials and Devices, School of Physical Science and Technology, Xinjiang University 666 Shengli Road Urumqi 830046 China
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24
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Gui Y, Chen W, Lu Y, Tang C, Xu L. Au Catalyst-Modified MoS 2 Monolayer as a Highly Effective Adsorbent for SO 2F 2 Gas: A DFT Study. ACS OMEGA 2019; 4:12204-12211. [PMID: 31460335 PMCID: PMC6682117 DOI: 10.1021/acsomega.9b01429] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 07/02/2019] [Indexed: 06/10/2023]
Abstract
To ensure the stable operation of gas-insulated equipment, removal of SF6 decomposition products of sulfur hexafluoride (SF6) is one of the best methods. SO2F2 is one of the typical decomposition products of SF6, while the Au-modified MoS2 (Au-MoS2) monolayer is a novel gas adsorbent. Therefore, based on the first-principles calculation, the adsorption properties of the SO2F2 molecule on the Au-MoS2 monolayer are calculated. Furthermore, the adsorption energy, charge transfer, and structure parameters were analyzed to obtain the most stable adsorption structure. These results indicate that all of the adsorption processes are exothermic. To better study the adsorption mechanism between the SO2F2 molecule and the Au-MoS2 monolayer, the density of states, the highest occupied molecular orbital, the lowest unoccupied molecular orbital, and electron density difference were obtained. At last, we conclude that the interaction between the SO2F2 molecule and the Au-MoS2 monolayer was chemisorption. This study provides a theoretical basis to prepare the Au-MoS2 monolayer for the removal of SF6 decomposition products.
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Affiliation(s)
- Yingang Gui
- College
of Engineering and Technology, Southwest
University, Chongqing 400715, China
| | - Wenlong Chen
- College
of Engineering and Technology, Southwest
University, Chongqing 400715, China
| | - Yuncai Lu
- Electric
Power Research Institute, State Grid Jiangsu
Electric Power Grid Co. Ltd., Nanjing 211102, China
| | - Chao Tang
- College
of Engineering and Technology, Southwest
University, Chongqing 400715, China
| | - Lingna Xu
- College
of Engineering and Technology, Southwest
University, Chongqing 400715, China
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25
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Qing W, Peng J, Wang X. Theoretical study on the stability, electronic, mechanical, vibrational and thermodynamic properties of rare-earth intermetallic compound Rh3Ce. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1526379] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Wei Qing
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, People’s Republic of China
| | - Jiayuan Peng
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, People’s Republic of China
| | - Xueye Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, People’s Republic of China
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26
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Qing W, Peng J, Wang X. First principles investigation of pressure dependent stability, phonon, Debye temperature, physical, mechanical and thermodynamic properties of Rh3Al intermetallic compound. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1521969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Wei Qing
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, People’s Republic of China
| | - Jiayun Peng
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, People’s Republic of China
| | - Xueye Wang
- Key Laboratory for Green Organic Synthesis and Application of Hunan Province, Key Laboratory of Environmentally Friendly Chemistry and Applications of Ministry of Education, College of Chemistry, Xiangtan University, Xiangtan, Hunan, People’s Republic of China
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27
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Strain Control of the Tunable Physical Nature of a Newly Designed Quaternary Spintronic Heusler Compound ScFeRhP. APPLIED SCIENCES-BASEL 2018. [DOI: 10.3390/app8091581] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Recently, an increasing number of rare-earth-based equiatomic quaternary compounds have been reported as promising novel spintronic materials. The rare-earth-based equiatomic quaternary compounds can be magnetic semiconductors (MSs), spin-gapless semiconductors (SGSs), and half-metals (HMs). Using first-principle calculations, we investigated the crystal structure, density of states, band structure, and magnetic properties of a new rare-earth-based equiatomic quaternary Heusler (EQH) compound, ScFeRhP. The results demonstrated that ScFeRhP is a HM at its equilibrium lattice constant, with a total magnetic moment per unit cell of 1 μB. Furthermore, upon introduction of a uniform strain, the physical state of this compound changes with the following transitions: non-magnetic-semiconductor-(NMS) → MS → SGS → HM → metal. We believe that these results will inspire further studies on other rare-earth-based EQH compounds for spintronic applications.
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28
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A DFT Study on the Adsorption of H₂S and SO₂ on Ni Doped MoS₂ Monolayer. NANOMATERIALS 2018; 8:nano8090646. [PMID: 30135410 PMCID: PMC6164490 DOI: 10.3390/nano8090646] [Citation(s) in RCA: 45] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2018] [Revised: 08/08/2018] [Accepted: 08/14/2018] [Indexed: 11/17/2022]
Abstract
In this paper, a Ni-doped MoS₂ monolayer (Ni-MoS₂) has been proposed as a novel gas adsorbent to be used in SF₆-insulated equipment. Based on the first-principles calculation, the adsorption properties of Ni-MoS₂ to SO₂ and H₂S molecules, the main decomposition components of SF₆ under a partial discharge (PD) condition have been studied. The adsorption energy, charge transfer, and structural parameters have been analyzed to find the most stable gas-adsorbed Ni-MoS₂. Furthermore, the density of states (DOS), projected density of states (PDOS), and electron density difference were employed to explore the interaction mechanism between SO₂, H₂S, and the Ni-MoS₂ surface. It is found that the H₂S molecule and SO₂ molecule interact with the Ni-MoS₂ surface by strong adsorption energy. Therefore, we conclude that the interaction between these two kinds of gases and the Ni-MoS₂ monolayer belongs to chemisorption, and the Ni-MoS₂ monolayer might be a promising gas adsorbent for the fault recovery of SF₆-insulated equipment. Additionally, we have to point out that all of the conclusions only considered the final adsorption energy, the barrier in the transition state has not been analyzed in this paper.
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29
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Ma J, Feng L, Guo R, Liao Y, Khenata R, Liu G, Wang L. New Half-Metallic Materials: FeRuCrP and FeRhCrP Quaternary Heusler Compounds. MATERIALS (BASEL, SWITZERLAND) 2017; 10:E1367. [PMID: 29182582 PMCID: PMC5744302 DOI: 10.3390/ma10121367] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/21/2017] [Revised: 11/21/2017] [Accepted: 11/24/2017] [Indexed: 11/16/2022]
Abstract
The electronic structures and magnetic properties of FeRuCrP and FeRhCrP quaternary Heusler compounds with LiMgPbSb-type structures have been investigated via first-principles calculations. The calculational results show that both FeRuCrP and FeRhCrP compounds present perfect half-metallic properties: Showing large half-metallic band gaps of 0.39 eV and 0.38 eV, respectively. The total magnetic moments of FeRuCrP and FeRhCrP are 3 μB and 4 μB per formula unit, respectively. The magnetism of them mainly comes from the 3d electrons of Cr atoms and follows the Slater-Paulig behavior of Heusler compounds: Mt = Zt - 24. Furthermore, the half-metallic properties of FeRuCrP and FeRhCrP compounds can be kept in a quite large range of lattice constants (about 5.44-5.82 Å and 5.26-5.86 Å, respectively) and are quite robust against tetragonal deformation (c/a ratio in the range of 0.94-1.1 and 0.97-1.1, respectively). Moreover, the large negative cohesion energy and formation energy of FeRuCrP and FeRhCrP compounds indicate that they can be synthesized experimentally.
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Affiliation(s)
- Jiannan Ma
- Tianjin Key Laboratory of Low Dimensional Materials Physics and Preparing Technology, Faculty of Science, Tianjin University, Tianjin 300350, China.
| | - Liefeng Feng
- Tianjin Key Laboratory of Low Dimensional Materials Physics and Preparing Technology, Faculty of Science, Tianjin University, Tianjin 300350, China.
| | - Ruikang Guo
- School of Materials Sciences and Engineering, Hebei University of Technology, Tianjin 300130, China.
| | - Yi Liao
- Tianjin Key Laboratory of Low Dimensional Materials Physics and Preparing Technology, Faculty of Science, Tianjin University, Tianjin 300350, China.
| | - Rabah Khenata
- Laboratory of Quantum Physics and Mathematical Modeling (LPQ3M), Department of Technology, University of Mascara, 29000 Mascara, Algeria.
| | - Guodong Liu
- School of Materials Sciences and Engineering, Hebei University of Technology, Tianjin 300130, China.
| | - Liying Wang
- Tianjin Key Laboratory of Low Dimensional Materials Physics and Preparing Technology, Faculty of Science, Tianjin University, Tianjin 300350, China.
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30
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Moon J, Baek H, Kim J. Mechanistic Investigation of Thermal and Photoreactions between Boron and Silane. J Phys Chem A 2017; 121:6531-6537. [DOI: 10.1021/acs.jpca.7b03202] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jiwon Moon
- Department of Chemistry, The Catholic University of Korea, Bucheon 14662, Republic of Korea
| | - Heehyun Baek
- Department of Chemistry, The Catholic University of Korea, Bucheon 14662, Republic of Korea
| | - Joonghan Kim
- Department of Chemistry, The Catholic University of Korea, Bucheon 14662, Republic of Korea
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31
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Zhu W, Zhang L, Trickey SB. Random phase approximation with second-order screened exchange for current-carrying atomic states. J Chem Phys 2016; 145:224106. [DOI: 10.1063/1.4971377] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- Wuming Zhu
- Department of Physics, Hangzhou Normal University, 16 Xuelin Street, Hangzhou, Zhejiang 310036, China
| | - Liang Zhang
- Institute of Service Engineering, Hangzhou Normal University, 2318 Yuhangtang Road, Cangqian, Hangzhou, Zhejiang 311121, China
| | - S. B. Trickey
- Quantum Theory Project, Department of Physics and Department of Chemistry, University of Florida, P.O. Box 118435, Gainesville, Florida 32611-8435, USA
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32
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Phatak P, Sumner I, Iyengar SS. Gauging the flexibility of the active site in soybean lipoxygenase-1 (SLO-1) through an atom-centered density matrix propagation (ADMP) treatment that facilitates the sampling of rare events. J Phys Chem B 2012; 116:10145-64. [PMID: 22838384 PMCID: PMC3558621 DOI: 10.1021/jp3015047] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a computational methodology to sample rare events in large biological enzymes that may involve electronically polarizing, reactive processes. The approach includes simultaneous dynamical treatment of electronic and nuclear degrees of freedom, where contributions from the electronic portion are computed using hybrid density functional theory and the computational costs are reduced through a hybrid quantum mechanics/molecular mechanics (QM/MM) treatment. Thus, the paper involves a QM/MM dynamical treatment of rare events. The method is applied to probe the effect of the active site elements on the critical hydrogen transfer step in the soybean lipoxygenase-1 (SLO-1) catalyzed oxidation of linoleic acid. It is found that the dynamical fluctuations and associated flexibility of the active site are critical toward maintaining the electrostatics in the regime where the reactive process can occur smoothly. Physical constraints enforced to limit the active site flexibility are akin to mutations and, in the cases studied, have a detrimental effect on the electrostatic fluctuations, thus adversely affecting the hydrogen transfer process.
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Affiliation(s)
- Prasad Phatak
- Department of Chemistry and Department of Physics, Indiana University, 800 E. Kirkwood Ave, Bloomington, IN-47405
| | - Isaiah Sumner
- Department of Chemistry and Department of Physics, Indiana University, 800 E. Kirkwood Ave, Bloomington, IN-47405
| | - Srinivasan S. Iyengar
- Department of Chemistry and Department of Physics, Indiana University, 800 E. Kirkwood Ave, Bloomington, IN-47405
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33
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Pittalis S, Kurth S, Sharma S, Gross EKU. Orbital currents in the Colle-Salvetti correlation energy functional and the degeneracy problem. J Chem Phys 2007; 127:124103. [PMID: 17902889 DOI: 10.1063/1.2777140] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Popular density functionals for the exchange-correlation energy typically fail to reproduce the degeneracy of different ground states of open-shell atoms. As a remedy, functionals which explicitly depend on the current density have been suggested. We present an analysis of this problem by investigating functionals that explicitly depend on the Kohn-Sham orbitals. Going beyond the exact-exchange approximation by adding correlation in the form of the Colle-Salvetti functional, we show how current-dependent terms enter the Colle-Salvetti expression and their relevance is evaluated. A very good description of the degeneracy of ground states for atoms of the first and second rows of the Periodic Table is obtained.
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Affiliation(s)
- S Pittalis
- Institut für Theoretische Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany
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34
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Pittalis S, Kurth S, Gross EKU. On the degeneracy of atomic states within exact-exchange (spin-) density functional theory. J Chem Phys 2006; 125:084105. [PMID: 16964999 DOI: 10.1063/1.2338038] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The problem of degenerate ground states of open-shell atoms is investigated in spin-restricted and spin-unrestricted density functional theories using the exact-exchange energy functional. For the spin-unrestricted case, spurious energy splittings of the order of 2-3 kcal/mol are found for atoms of the second and third periods which are larger than the splittings obtained from recently proposed approximate exchange functionals depending explicitly on the current density. In remarkable contrast, for spin-restricted calculations the degeneracy of different atomic ground states is recovered to within less than 0.6 kcal/mol.
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Affiliation(s)
- S Pittalis
- Institut für Theoretische Physik, Freie Universität Berlin, Arnimallee 14, D-14195 Berlin, Germany
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35
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Tao J, Perdew JP. Nonempirical construction of current-density functionals from conventional density-functional approximations. PHYSICAL REVIEW LETTERS 2005; 95:196403. [PMID: 16384002 DOI: 10.1103/physrevlett.95.196403] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2005] [Indexed: 05/05/2023]
Abstract
Density-functional approximations for the exchange-correlation energy Exc[n] of a many-electron ground state are highly developed and widely useful. When a paramagnetic current jp(r) is present, Vignale and Rasolt have extended the Kohn-Sham theorems and presented an additive correction valid to second order in the gauge-invariant vorticity nu=Delta x (jp/n):Exc[n, jp]=Exc[n, jp=0] + DeltaE(VR)(xc)[n, nu]. Apart from spin-polarization effects, their correction is unambiguous for a generalized gradient approximation (GGA). But for a meta-GGA (MGGA), one needs to know how to go back from the orbital kinetic energy density tau([n, jp];r) to tau([n,0];r); we show how to do this here. Numerical tests on the degeneracies for open-shell atoms show that current-density corrections reduce the error of GGA from 2 to 1 kcal/mol, and of MGGA from 5 to 2 kcal/mol.
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Affiliation(s)
- Jianmin Tao
- Department of Physics and Quantum Theory Group, Tulane University, New Orleans, Louisiana 70118, USA.
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36
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Nagy A, Liu S, Bartolloti L. Generalized density functional theory for degenerate states. J Chem Phys 2005; 122:134107. [PMID: 15847455 DOI: 10.1063/1.1871933] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
An extension of density functional theory is proposed for degenerate states. There are suitably selected basic variables beyond the subspace density. Generalized Kohn-Sham equations are derived. A direct method is proposed to ensure the fixed value of ensemble quantities. Then the Kohn-Sham equations are similar to the conventional Kohn-Sham equations. But the Kohn-Sham potential is different for different ensembles. A simple local expression is proposed for the correlation energy.
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Affiliation(s)
- A Nagy
- Department of Theoretical Physics, University of Debrecen, H-4010 Debrecen, Hungary
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37
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Peralta JE, Scuseria GE. Relativistic all-electron two-component self-consistent density functional calculations including one-electron scalar and spin–orbit effects. J Chem Phys 2004; 120:5875-81. [PMID: 15267469 DOI: 10.1063/1.1650309] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We have implemented a Gaussian basis-set two-component self-consistent field method based on the fourth-order nuclear-only Douglas-Kroll-Hess approximation. Two-electron spin-orbit effects are included using Boettger's screened-nuclear spin-orbit approximation. In our two-component approach, the spin-orbit interaction is taken into account in a variational fashion employing a generalized Kohm-Sham scheme which allows one to work with hybrid density functionals. For open-shell systems we adopt the noncollinear spin-density approximation. Results are presented for equilibrium bond lengths, harmonic vibrational frequencies, and bond dissociation energies with local spin-density, generalized gradient approximation, and hybrid functionals in a set of benchmark molecules.
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Affiliation(s)
- Juan E Peralta
- Department of Chemistry, Rice University, Houston, Texas 77005-1892, USA.
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