Spectroscopy of the transition state: Elementary reactions of the hydroxyl radical studied by photoelectron spectroscopy of O−(H2O) and H3O−2

The primary gas phase hydration shell of hydroxide

The number of water molecules in hydroxide's primary hydration shell has been long debated to be three from the interpretation of experimental data and four from theoretical studies. Here, we provide direct evidence for the presence of a fourth water molecule in hydroxide's primary hydration shell from a combined study based on high-resolution cryogenic experimental photoelectron spectroscopy and high-level quantum chemical computations. Well-defined spectra of OH^-(H₂O)_n clusters (n = 2 to 5) yield accurate electron binding energies, which are, in turn, used as key signatures of the underlying molecular conformations. Although the smaller OH^-(H₂O)₃ and OH^-(H₂O)₄ clusters adopt close-lying conformations with similar electron binding energies that are hard to distinguish, the OH^-(H₂O)₅ cluster clearly has a predominant conformation with a four-coordinated hydroxide binding motif, a finding that unambiguously determines the gas phase coordination number of hydroxide to be four.

Dissociative photodetachment of H3O2-: a full-dimensional quantum dynamics study

The transition state is a central concept of chemistry. Photoelectron-photofragment coincidence (PPC) spectroscopy has been proven as an attractive method to study the transition state dynamics. Within a state-of-the-art full-dimensional quantum mechanical model, the dissociative photodetachment dynamics of H₃O₂^- is investigated on accurate anion and neutral potential energy surfaces. The calculated PPC spectrum of H₃O₂^- agrees well with the experimental measurement. The dissociative product OH is exclusively populated on the ground vibrational state, implying the character of the spectator bond. In contrast, the product H₂O is predominantly populated in the ground and fundamental states of the symmetric and antisymmetric stretching modes, which is caused by the strong coupling between the antisymmetric motion of the transferred H atom in the transient intermediate [H₃O₂]* and both stretching modes of the product H₂O.

Formation of Hydrogen Peroxide from O-(H2O)n Clusters

Hydrogen peroxide (H₂O₂) has recently received much attention as a safe and clean energy carrier for hydrogen molecules. In this study, based on direct ab initio molecular dynamics (AIMD) calculations, we demonstrated that H₂O₂ is directly formed via the photoelectron detachment of O^-(H₂O)_n (n = 1-6) (water clusters of an oxygen radical anion). Three electronic states of oxygen atoms were examined in the calculations: O(X)(H₂O)_n (X = ³P, ¹D, and ¹S states). After the photoelectron detachment of O^-(H₂O)_n (n = 1) to the ¹S state, a complex comprising O(¹S) and H₂O, O(¹S)-OH₂, was formed. A hydrogen atom of H₂O immediately transferred to O(¹S) during an intracluster reaction to form H₂O₂ as the final product. Simulations were run to obtain a total of 33 trajectories for n = 1 that all led to the formation of H₂O₂. The average reaction time of H₂O₂ formation was calculated to be 57.7 fs in the case of n = 1, indicating that the reaction was completed within 100 fs of electron detachment. All the reaction systems O(¹S)(H₂O)_n (n = 1-6) indicated the formation of H₂O₂ by the same mechanism. The reaction times for n = 2-6 were calculated to range between 80 and 180 fs, indicating that the reaction for n = 1 is faster than that of the larger clusters, that is, the larger the cluster size, the slower the reaction is. The reaction dynamics of the triplet O(³P) and singlet O(¹D) potential energy surfaces were calculated for comparison. All calculations yielded the dissociation product O(X)(H₂O)_n → O(X) + (H₂O)_n (X = ³P and ¹D), indicating that the O(¹S) state contributes to the formation of H₂O₂. The reaction mechanism was discussed based on the theoretical results.

Quantum calculations of the photoelectron spectra of the OH-·NH3 anion: implications for OH + NH3→ H2O + NH2 reaction dynamics

We present the results of quantum dynamics calculations for analyzing the experimentally measured photoelectron spectra of the OH^-·NH₃ anion complex. Detachment of an excess electron of OH^-·NH₃ initially produces a molecular arrangement, which is close to the transition-state structure of the neutral OH + NH₃→ H₂O + NH₂ hydrogen abstraction reaction due to the Franck-Condon principle, and thus finally leads to the OH + NH₃ or H₂O + NH₂ asymptotic channel. We used both the path integral method and the reduced-dimensionality quantum wave packet method to simulate the photoelectron spectra of the OH^-·NH₃ anion. The calculated spectra were found to be in qualitative agreement with the experimental spectra. It was found that the photodetached complex mainly dissociates into the OH + NH₃ channel; however, we found that the hydrogen exchange process also contributes to the photodetachment spectra.

Cryogenic Vibrationally Resolved Photoelectron Spectroscopy of OH-(H2O): Confirmation of Multidimensional Franck-Condon Simulation Results for the Transition State of the OH + H2O Reaction

We present a transition state spectroscopic study of the OH + H₂O reaction using the experimental technique of cryogenic negative ion photoelectron spectroscopy (NIPES). The recorded NIPE spectrum at 193 nm exhibits multiple vibrational progressions that include excitations to the shared H atom antisymmetric stretching mode with an interval of 0.32 eV as well as other progressions, mainly involving the H bending and O···O symmetric stretching modes. The vertical detachment energy (VDE) was measured at 3.53 eV, whereas an upper limit for the adiabatic detachment energy (ADE) was estimated at 2.90 eV. These values are in excellent agreement with the theoretically computed values of 3.51 and 2.87 eV, respectively, obtained at the CCSD(T)/aug-cc-pV5Z level of theory. The recorded NIPE spectrum is in very good agreement when compared to the one recently reported from four-dimensional Franck-Condon simulations, in which a similar spectral profile was predicted. Besides observing the ground state, we identified a charge-transfer excited state in the form of [OH^-(H₂O)⁺] with a relative energy of 1.39 eV, well matching the previous prediction of 1.36 eV.

A Full-Dimensional Potential Energy Surface and Dynamics of the Multichannel Reaction between H and HO2

In addition to its vital significance in combustion and atmospheric chemistry, the reaction between H' and HO₂ on the ground triplet state represents a prototype with multiple product channels, including H₂ + O₂, OH + OH, O + H₂O, and H + H'O₂. In this work, a full-dimensional accurate potential energy surface (PES) for the title reaction was developed to provide reliable descriptions for all dynamically relevant regions. Using this PES, we adopted the quasi-classical trajectory approach to study the corresponding reaction dynamics, including the reactivity of each product channel and the associated product branching ratio, the product energy distributions, product angular distributions, and associated microscopic mechanisms. For representing distributions of the product energies, such as product translational energy as well as product rotational and vibrational energies, both the traditional histogram and the kernel density estimation (KDE) methods were used and compared. It seems that the features of the resulting distributions in this work are very similar to each other among different methods. The KDE method is suggested for statistics, particularly for those populations with small oscillations in the histogram plot.

Franck–Condon simulations of transition-state spectra for the OH + H2O and OD + D2O reactions

Quantum wave packet calculations in reduced dimensions were performed to analyze the experimentally measured transition-state spectra of the OH + H₂O and OD + D₂O hydrogen exchange reactions.

Quantum dynamics analysis of transition-state spectrum for the SH + H2S → H2S + SH reaction

Quantum dynamics calculations were performed to understand transition-state spectroscopy of the SH + H₂S hydrogen atom transfer reaction.

Mode-specific quantum dynamics and kinetics of the hydrogen abstraction reaction OH + H2O → H2O + OH

The synergistic effect between the reactant stretching and bending modes on promoting the reaction.

Tracking the energy flow in the hydrogen exchange reaction OH + H2O → H2O + OH

The prototypical hydrogen exchange reaction OH + H2O → H2O + OH has attracted considerable interest due to its importance in a wide range of chemically active environments. In this work, an accurate global potential energy surface (PES) for the ground electronic state was developed based on ∼44 000 ab initio points at the level of UCCSD(T)-F12a/aug-cc-pVTZ. The PES was fitted using the fundamental invariant-neural network method with a root mean squared error of 4.37 meV. The mode specific dynamics was then studied by the quasi-classical trajectory method on the PES. Furthermore, the normal mode analysis approach was employed to calculate the final vibrational state distribution of the product H2O, in which a new scheme to acquire the Cartesian coordinates and momenta of each atom in the product molecule from the trajectories was proposed. It was found that, on one hand, excitation of either the symmetric stretching mode or the asymmetric stretching mode of the reactant H2O promotes the reaction more than the translational energy, which can be rationalized by the sudden vector projection model. On the other hand, the relatively higher efficacy of exciting the symmetric stretching mode than that of the asymmetric stretching mode is caused by the prevalence of the indirect mechanism at low collision energies and the stripping mechanism at high collision energies. In addition, the initial collision energy turns ineffectively into the vibrational energy of the products H2O and OH while a fraction of the energy transforms into the rotational energy of the product H2O. Fundamental excitation of the stretching modes of H2O results in the product H2O having the highest population in the fundamental state of the asymmetric stretching mode, followed by the ground state and the fundamental state of the symmetric stretching mode.

Time-of-flight mass spectrometry: Introduction to the basics

The intention of this tutorial is to introduce into the basic concepts of time-of-flight mass spectrometry, beginning with the most simple single-stage ion source with linear field-free drift region and continuing with two-stage ion sources combined with field-free drift regions and ion reflectors-the so-called reflectrons. Basic formulas are presented and discussed with the focus on understanding the physical relations of geometric and electric parameters, initial distribution of ionic parameters, ion flight times, and ion flight time incertitude. This tutorial is aimed to help the applicant to identify sources of flight time broadening which limit good mass resolution and sources of ion losses which limit sensitivity; it is aimed to stimulate creativity for new experimental approaches by discussing a choice of instrumental options and to encourage those who toy with the idea to build an own time-of-flight mass spectrometer. Large parts of mathematics are shifted into a separate chapter in order not to overburden the text with too many mathematical deviations. Rather, thumb-rule formulas are supplied for first estimations of geometry and potentials when designing a home-built instrument, planning experiments, or searching for sources of flight time broadening. © 2016 Wiley Periodicals, Inc. Mass Spec Rev 36:86-109, 2017.

Quasi-classical trajectory studies on the full-dimensional accurate potential energy surface for the OH + H2O = H2O + OH reaction

The first accurate PES for the OH + H₂O reaction is developed by using the permutation invariant polynomial-neural network method to fit ∼48 000 CCSD(T)-F12a/AVTZ calculated points.

Theoretical calculation of the vibrational state dependent photodetachment spectra of X-H2O, X = F, Cl, Br

Vibrational spectra of X^-H₂O (X = F, Cl, Br) were simulated using full dimensional vibrational calculations using quantum chemistry potential energy surfaces. Furthermore, utilizing the reflection approximation, we simulated the photodetachment spectra obtained from different vibrational excited states. From these spectra, we can observe changes in the hydrogen bond interaction between the anion and the neutral XH₂O system. Notably, for F^-H₂O, the excitation of the ionic hydrogen bonded (IHB) OH stretching vibration generates a large tail on the low energy side of the photodetachment spectra compared to the detachment from the zero-point vibration state. This shows that the IHB OH stretching vibration of F^-H₂O causes charge delocalization from F^- to the oxygen atom in H₂O, and that the photodetachment from FHOH^- occurs at lower energies.

An accurate multi-channel multi-reference full-dimensional global potential energy surface for the lowest triplet state of H2O2

A full dimensional potential energy surface for the lowest triplet state of H₂O₂ was developed at the MRCI-F12 level.

Photodetachment-photoelectron spectroscopy of HS- x H2S and DS- x D2S: the transition states of the SH + H2S and SD + D2S reactions

The transition state region for neutral hydrogen transfer reactions can be accessed by photodetachment of a stable negative ion with a geometry similar to that of the neutral transition state. In this work the SH + H(2)S and SD + D(2)S reactions are investigated by photodetachment-photoelectron spectroscopy of HS(-) x H(2)S and DS(-) x D(2)S. The spectra exhibit vibrational structure which is attributed to the antisymmetric stretching mode (H-atom motion) of the neutral transitions state for H-atom transfer. The spectra are compared to one-dimensional simulations performed using a wave packet propagation scheme. Electronic structure calculations of the anionic, neutral and transition-state geometries and calculations of the vertical detachment energy at different levels of theory are used to support the analysis of the spectra. A vertical detachment energy VDE of 3.06 eV has been determined.

The relaxation of OH (v=1) and OD (v=1) by H2O and D2O at temperatures from 251 to 390 K

We report rate coefficients for the relaxation of OH(v=1) and OD(v=1) by H2O and D2O as a function of temperature between 251 and 390 K. All four rate coefficients exhibit a negative dependence on temperature. In Arrhenius form, the rate coefficients for relaxation (in units of 10(-12) cm3 molecule-1 s-1) can be expressed as: for OH(v=1)+H2O between 263 and 390 K: k=(2.4+/-0.9) exp((460+/-115)/T); for OH(v=1)+D2O between 256 and 371 K: k=(0.49+/-0.16) exp((610+/-90)/T); for OD(v=1)+H2O between 251 and 371 K: k=(0.92+/-0.16) exp((485+/-48)/T); for OD(v=1)+D2O between 253 and 366 K: k=(2.57+/-0.09) exp((342+/-10)/T). Rate coefficients at (297+/-1 K) are also reported for the relaxation of OH(v=2) by D2O and the relaxation of OD(v=2) by H2O and D2O. The results are discussed in terms of a mechanism involving the formation of hydrogen-bonded complexes in which intramolecular vibrational energy redistribution can occur at rates competitive with re-dissociation to the initial collision partners in their original vibrational states. New ab initio calculations on the H2O-HO system have been performed which, inter alia, yield vibrational frequencies for all four complexes: H2O-HO, D2O-HO, H2O-DO and D2O-DO. These data are then employed, adapting a formalism due to Troe (J. Troe, J. Chem. Phys., 1977, 66, 4758), in order to estimate the rates of intramolecular energy transfer from the OH (OD) vibration to other modes in the complexes in order to explain the measured relaxation rates-assuming that relaxation proceeds via the hydrogen-bonded complexes.

Structures and Energetics of Hydrated Oxygen Anion Clusters

Hydration of the atomic oxygen radical anion is studied with computational electronic structure methods, considering (O(-))(H(2)O)(n) clusters and related proton-transferred (OH(-))(OH)(H(2)O)(n)(-)(1) clusters having n = 1-5. A total of 67 distinct local-minimum structures having various interesting hydrogen bonding motifs are obtained and analyzed. On the basis of the most stable form of each type, (O(-))(H(2)O)(n)) clusters are energetically favored, although for n > or = 3, there is considerable overlap in energy between other members of the (O(-))(H(2)O)(n) family and various members of the (OH(-))(OH)(H(2)O)(n)(-)(1) family. In the lower-energy (O(-))(H(2)O)(n) clusters, the hydrogen bonding arrangement about the oxygen anion center tends to be planar, leaving the oxygen anion p-like orbital containing the unpaired electron uninvolved in hydrogen bonding with any water molecule. In (OH(-))(OH)(H(2)O)(n)(-)(1) clusters, on the other hand, nonplanar arrangements are the rule about the anionic oxygen center that accepts hydrogen bonds. No instances are found of OH(-) acting as a hydrogen bond donor. Those OH bonds that form hydrogen bonds to an anionic O(-) or OH(-) center are significantly stretched from their equilibrium value in isolated water or hydroxyl. A quantitative inverse correlation is established for all hydrogen bonds between the amount of the OH bond stretch and the distance to the other oxygen involved in the hydrogen bond.

Potential surfaces and dynamics of the O(P3)+H2O(XA111)→OH(XΠ2)+OH(XΠ2) reaction

We present global potential energy surfaces for the three lowest triplet states in O(3P)+H2O(X1A1) collisions and present results of classical dynamics calculations on the O(3P)+H2O(X1A1)-->OH(X2pi)+OH(X2pi) reaction using these surfaces. The surfaces are spline-based fits of approximately 20,000 fixed geometry ab initio calculations at the complete-active-space self-consistent field+second-order perturbation theory (CASSCF+MP2) level with a O(4s3p2d1f)/H(3s2p) one electron basis set. Computed rate constants compare well to measurements in the 1000-2500 K range using these surfaces. We also compute the total, rovibrationally resolved, and differential angular cross sections at fixed collision velocities from near threshold at approximately 4 km s(-1) (16.9 kcal mol(-1) collision energy) to 11 km s(-1) (122.5 kcal mol(-1) collision energy), and we compare these computed cross sections to available space-based and laboratory data. A major finding of the present work is that above approximately 40 kcal mol(-1) collision energy rovibrationally excited OH(X2pi) products are a significant and perhaps dominant contributor to the observed 1-5 micro spectral emission from O(3P)+H2O(X1A1) collisions. Another important result is that OH(X2pi) products are formed in two distinct rovibrational distributions. The "active" OH products are formed with the reagent O atom, and their rovibrational distributions are extremely hot. The remaining "spectator" OH is relatively rovibrationally cold. For the active OH, rotational energy is dominant at all collision velocities, but the opposite holds for the spectator OH. Summed over both OH products, below approximately 50 kcal mol(-1) collision energy, vibration dominates the OH internal energy, and above approximately 50 kcal mol(-1) rotation is greater than vibrational energy. As the collision energy increases, energy is diverted from vibration to mostly translational energy. We note that the present fitted surfaces can also be used to investigate direct collisional excitation of H2O(X1A1) by O(3P) and also OH(X2pi)+OH(X2pi) collisions.

Ab initio investigation on the reaction path and rate for the gas-phase reaction of HO + H2O <--> H2O + OH

This article describes an ab initio investigation on the potential surfaces for one of the simplest hydrogen atom abstraction reactions, that is, HO + H2O <--> H2O + OH. In accord with the findings in the previously reported theoretical investigations, two types of the hydrogen-bonding complexes [HOH--OH] and [H2O--HO] were located on the potential energy surface. The water molecule acts as a hydrogen donor in the [HOH--OH] complex, while the OH radical acts as a hydrogen donor in the [H2O--HO] complex. The energy evaluations at the MP2(FC) basis set limit, as well as those through the CBS-APNO procedure, have provided estimates for enthalpies of association for these complexes at 298 K as -2.1 approximately -2.3 and -4.1 approximately -4.3 kcal/mol, respectively. The IRC calculations have suggested that the [H2O--HO] complex should be located along the reaction coordinate for the hydrogen abstraction. Our best estimate for the classical barrier height for the hydrogen abstraction is 7.8 kcal/mol, which was obtained from the CBS-APNO energy evaluations. After fitting the CBS-APNO potential energy curve to a symmetrical Eckart function, the rate constants were calculated by using the transition state theory including the tunneling correction. Our estimates for the Arrhenius parameters in the temperature region from 300 to 420 K show quite reasonable agreement with the experimentally derived values.

Hydrogels based on poly(ethylene oxide) and poly(tetramethylene oxide) or poly(dimethyl siloxane). III. In vivo biocompatibility and biostability

To investigate the effects of polymer chemistry and topology (linear or graft copolymer) on in vivo biocompatibility and biostability based on cage implant system, various hydrogels, composed of short hydrophilic [polyethylene oxide (PEO)] and hydrophobic block, were prepared by polycondensation reaction. Poly(tetramethylene oxide) (PTMO) or poly(dimethyl siloxane) (PDMS) was chosen as a hydrophobic block because of their wide utilization as a biomaterial. By using the specimens retrieved from rats killed after 1, 2, 3, 5, and 7 weeks' implantation, cellular and material responses were assessed. Most hydrogels showed a comparable value of macrophage density to Pellethane(R), control polymer, whereas they did significantly lower foreign body giant cell (FBGC) density and coverage because of the presence of PEO. However, PEO block length and polymer topology did not affect macrophage adhesion and FBGC formation in our polymer composition. The hydrogel based on PDMS alone showed significantly lower macrophage density and FBGC density than Pellethane(R), indicating that PDMS plays a role in inhibiting cellular adhesion. The results obtained from gel permeation chromatography curve and Fourier transform infrared spectra exhibited that all the polymers were susceptible to oxidative degradation in vivo. Although Pellethane(R) revealed surface degradation by 5 weeks in vivo, hydrogels showed rapid degradation in the bulk within 2 weeks because of the penetration of oxidative chemicals released from phagocytic cells into PEO domain of phase-separated hydrogels. The more significant degradation was observed in the hydrogels with longer PEO block and PTMO as a hydrophobic block instead of PDMS. It was evident that the minor degradation could be achieved by grafting PEO and adopting PDMS as a hydrophobic block in the hydrogel.

Coincidence spectroscopy

The application of coincidence techniques to the study of the reaction dynamics of isolated molecules is reviewed. Coincidence spectroscopy is a powerful approach for carrying out a number of measurements. At its most basic level, coincidence techniques can identify the source of a specific signal, as in the well-known photoelectron-photoion coincidence approach used for several years. By carrying out coincidence experiments in an increasingly differential manner, correlated energy and angular distributions of reaction products may be recorded. Completely energy- and angle-resolved measurements of photoelectrons and ionic or neutral products can reveal molecular-frame photoelectron and photofragment angular distributions and aid in the characterization of dissociative states of molecules and ions. Recent work in this area is reviewed, including examples from studies of dissociative photodetachment, dissociative photoionization, time-resolved studies of dissociative photoionization, and three-body dissociation processes.

Quantum theory of chemical reaction dynamics

It is now possible to use rigorous quantum scattering theory to perform accurate calculations on the detailed state-to-state dynamics of chemical reactions in the gas phase. Calculations on simple reactions, such as H + D2 --> HD + D and F + H2 --> HF + H, compete with experiment in their accuracy. Recent advances in theory promise to extend such accurate predictions to more complicated reactions, such as OH + H2 --> H2O + H, and even to reactions of molecules on solid surfaces. New experimental techniques for probing reaction transition states, such as negative-ion photodetachment spectroscopy and pump-probe femtosecond spectroscopy, are stimulating the development of new theories.

Role of oxygen in biodegradation of poly(etherurethane urea) elastomers

It is generally accepted that biodegradation of poly(etheruethane urea) (PEUU) involves oxidation of the polyether segments on the surface where leukocytes are adhered. The influence of dissolved oxygen, which is known to control oxidation of polymers in more traditional environments, was explored in this study. Specimens treated in vitro with hydrogen peroxide-cobalt chloride for 12 days exhibited a brittle, degraded surface layer about 10 microm thick. Attenuated total reflectance-Fourier transform infrared spectroscopy of the surface revealed that the ether absorbance at 1110 cm(-1) gradually decreased with in vitro treatment time to 30% of its initial value after 12 days. In contrast, 6 days in vitro followed by 6 days in air produced a decrease to 12% of the initial volume. Therefore, removing a specimen from the in vitro solution after 6 days and exposing it to air for the remainder of the 12 days actually resulted in more oxidation than leaving it in the in vitro solution for the entire 12 days. These results suggest that PEUU degrades by an autooxidation mechanism sustained by oxygen. By successfully modeling the depth of the surface degraded layer with a diffusion-reaction model, it was demonstrated that PEUU biodegradation is controlled by diffusion of oxygen into the polymer.